LOCUS       DATMDK010000001         2326 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_229856,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000001 DATMDK010000000
VERSION     DATMDK010000001.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2326)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2326)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2326
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_229856"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..190)
                     /locus_tag="VNN98_00005"
     CDS             complement(<1..190)
                     /locus_tag="VNN98_00005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020044787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HWM60494.1"
                     /translation="MTAGLHIIGGGLAGSEAAWQAAESGVAVSLHEMRPVCGTEAHQT
                     DSLAELVCSNSFRSDDAAN"
     gene            504..767
                     /locus_tag="VNN98_00010"
     CDS             504..767
                     /locus_tag="VNN98_00010"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM60495.1"
                     /translation="MFGIKSIVAALTVATMIGSSAFAADGTFAPGKPAGVKSAQEIGH
                     GTLLIGIGAAAVITGVAIAVSDQSGDRSGPTTFAPAVTSATAP"
     gene            1026..1277
                     /locus_tag="VNN98_00015"
     CDS             1026..1277
                     /locus_tag="VNN98_00015"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM60496.1"
                     /translation="MAEENKGTNYARLALGAGLLAAAAVSVAVFVPRRRLAFVTEPLA
                     TIAKLPVAAAIAALAMGLWHDATAPQAPVFDDLRPFDEF"
     gene            1305..2171
                     /locus_tag="VNN98_00020"
     CDS             1305..2171
                     /locus_tag="VNN98_00020"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM60497.1"
                     /translation="MRRISVVATIRDGYVLAATHLGGVIGLIWVSMVMITIARYFTFY
                     RFYNDFIDFLASNNPAQMGPTVLMMLGYLVAALLLYAVMFVAVVQLALGTRTAPAFIH
                     FAFGPLEWRMFRALFAFAGLMLLIGMAIMIAVNAVFALVPAAKANQAALSSILVLAML
                     GIGLVLTARFLLLLPAIAVNETTPALRRAWALSAGNVLPLLGVLLGIFLPVALVFVLI
                     DLGLGERGAAAMGATPQLQMIAAVMQARQTLPLTCGLSFFFSPLVIALFAGASVSAWR
                     TLKDEPVTEIVA"
BASE COUNT          386 a          705 c          730 g          505 t
ORIGIN      
        1 tgttcgccgc atcgtccgag cggaaggaat tggagcaaac cagttccgcc agcgagtccg
       61 tctgatgggc ctcggtgccg cacaccgggc gcatctcgtg cagagacacc gccacgcctg
      121 attcggccgc ctgccaggcc gcttccgacc cggccagccc gccgccgatg atgtgtagcc
      181 ctgctgtcat gggccaggct ttagcaggtt ggggagggcg cgcaaacgga ttgctccgtc
      241 cgtctcggcc aagacgtctt cgcaattgca gcattgaaca agaccggggc aaatccatat
      301 tttcacgggg tggtttgcgg gcctcgatac accagaaaac gattctgcag agacgtttga
      361 tagccgaaaa aaccctcgcg gattcatatg ccgcattgcg ataaagcctt ttggcaacag
      421 tcaaaaagga attggggatg gccggttgac ttggctcaac ccttcggaca agtatgccgc
      481 cataagacaa tgggggaagc ctaatgttcg gtattaagag tattgttgct gcgcttacgg
      541 tggcaacgat gattggttct tcggctttcg ccgctgacgg tacgtttgcg cccggcaagc
      601 ctgccggcgt gaaatcggcg caggaaatcg gccacggcac gctgctgatt ggtatcggcg
      661 ctgccgccgt gatcaccggt gttgccatcg ctgtatcgga ccagagcggt gatcgcagtg
      721 ggccgacgac tttcgcgccc gcggtcacca gcgcgaccgc cccctaaagg cgtagaattt
      781 ccaacggaat agcgaaagcc cgccatccag atggcgggct tttttgccgt tttggcccat
      841 gtctcacatt gggcgtcgct ttaacacttt tgtgttgggc ctgtgcgaga atgacgtgcg
      901 agaatgtcct ttaagagacg cgacgataaa agcttcggga tgaacgcgaa gcgggatgac
      961 ggcggcgagg ccgccgccta tatatgatcc agcaagggac gctggcaaag gaacgaagaa
     1021 ctgcaatggc cgaggaaaac aagggaacca actatgccag gctggcgctg ggcgctggcc
     1081 tgctggccgc cgccgctgtc agcgtcgccg ttttcgtgcc gcgccgccgg cttgcctttg
     1141 tcaccgagcc tctggccacc atcgccaagc tgccggttgc ggcggctatc gcggccttgg
     1201 ccatgggctt gtggcatgac gcgaccgcgc cccaggcgcc ggtattcgac gacctgcgcc
     1261 cctttgatga attctaagag cggcccagaa agcattcgga cgtgatgcga cgcatttctg
     1321 tcgtcgcgac catccgtgat ggctatgtcc tggccgccac ccatctgggc ggagtgatcg
     1381 gcctcatctg ggtgtcgatg gtgatgatca ccattgcccg gtatttcacc ttctatcgtt
     1441 tctacaacga cttcatcgat tttctggcca gcaacaatcc ggcccagatg ggtccgaccg
     1501 tgctgatgat gctgggctat ctggtggcgg cgctgctgct gtatgccgtg atgttcgtgg
     1561 cggtggtgca attggcgctg ggcacgcgca ctgcgccggc cttcatccac ttcgccttcg
     1621 gccctctgga atggcgcatg ttccgcgcgc tcttcgcctt tgccggcctg atgctgctga
     1681 tcggcatggc gatcatgatc gcggtgaacg ccgtctttgc ccttgtgccg gccgcgaaag
     1741 ccaatcaagc cgccctcagc agtattctgg tcctggcgat gcttggcatc gggctggtgc
     1801 tgacggcgcg cttcctgctg ctgctgccgg ccatcgccgt caatgaaacc acgccggcgc
     1861 tgcgccgcgc ctgggcgctg tcggcgggca atgtcctgcc gctgctgggc gtgctgctgg
     1921 ggattttcct gccggtggcg ctggtctttg tcctgatcga cctgggactg ggagaaaggg
     1981 gcgccgctgc gatgggcgcg acaccgcagc ttcagatgat cgccgccgtc atgcaggcgc
     2041 gccagacctt gcccctgacc tgcggcttga gtttcttctt ctcgccgctg gtgatcgccc
     2101 tgttcgcggg cgccagcgtc tcggcctggc gaacattgaa ggatgagccg gtcaccgaga
     2161 ttgtcgcctg acgggcgcgc tttttccgtt tattccgccg ctttcaaccg tttcggcgcg
     2221 gccgcgtttt tcagcagcgg tttgagatag cggccggtat aggagcgggc atttttcgcc
     2281 acctcttccg gcgtgccgct ggcgacgatt tcgccgccgc cgtcgc
//
LOCUS       DATMDK010000002         2538 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1829626,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000002 DATMDK010000000
VERSION     DATMDK010000002.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2538)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2538)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2538
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1829626"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            103..1026
                     /gene="ispH"
                     /locus_tag="VNN98_00025"
                     /gene_synonym="lytB"
     CDS             103..1026
                     /gene="ispH"
                     /locus_tag="VNN98_00025"
                     /gene_synonym="lytB"
                     /EC_number="1.17.7.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017387043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051745 - 4-hydroxy-3-methylbut-2-en-1-yl
                     diphosphate reductase activity [Evidence IEA];
                     GO_process: GO:0019288 - isopentenyl diphosphate
                     biosynthetic process, methylerythritol 4-phosphate pathway
                     [Evidence IEA];
                     GO_process: GO:0050992 - dimethylallyl diphosphate
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-3-methylbut-2-enyl diphosphate
                     reductase"
                     /protein_id="HWM60498.1"
                     /translation="MRVILAQPRGFCAGVVRAIDIVEKALDKYGEPVYVRHEIVHNKH
                     VVDTLKNKGARFVEELDEVPEGAVTVFSAHGVPQSVVKTAQDRGLPVLDATCPLVSKV
                     HNQGKRYVAHGRTLILIGHAGHPEVEGTMGQVGAPVTLVQNEADVAEMSIPTDTPVAY
                     ITQTTLSIDDTKGIIVALKKRFSDIVGPETSDICYATQNRQTSVRELAKIADVILVVG
                     AANSSNSNRLREIGIEEGVPSYLINDGSELKAEWVRGKEVVGLTAGASAPEELVRHVI
                     AALGEIEDVEVEQMDGKKEHIEFRLPAELRA"
     gene            1030..2178
                     /gene="hpnH"
                     /locus_tag="VNN98_00030"
     CDS             1030..2178
                     /gene="hpnH"
                     /locus_tag="VNN98_00030"
                     /inference="COORDINATES: protein motif:HMM:TIGR03470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenosyl-hopene transferase HpnH"
                     /protein_id="HWM60499.1"
                     /translation="MGSLPLRQAAKIGAYVVKKELSGGKYPLVLMLEPLFRCNLACAG
                     CGKIDYPDEILNQRMTYEQCMQAIDDCGAPAVSIAGGEPLLHRDMAKIVEGYIARDKF
                     VILCTNALLLAKKIDQYKPHPNFTWSIHLDGDKGMHDKSVCQDGTYDRAIAAIKLAKA
                     KGFRTQINCTLFDGTDPERTAKFFDEMMAMGVDGMTVSPGYAYERAPDQQHFLNRERT
                     KKMFRDILSRGRGGKAWEFTNSSLFMDFLAGNQTYECTPWSMPLLTVFGWQKPCYLLG
                     EGYAATFQELMEGTEWEKYGVGKYEKCANCMVHCGFEGTAATDVIKHPLKMLPILMRG
                     VKTDGPMAREIDLSKQRPAEFTFSRHVEHKMSQIKAGNSNTTEIEAAE"
     gene            complement(2125..>2538)
                     /locus_tag="VNN98_00035"
     CDS             complement(2125..>2538)
                     /locus_tag="VNN98_00035"
                     /inference="COORDINATES: protein motif:HMM:NF013232.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM60500.1"
                     /translation="LMSRLVSRIPGAHQGRLFGSDVIIEKAETKAGLHVATAALAVDM
                     ESQVAARFAYARKLPLAGLRVISDDATHVLPPAALVAMRPDGGIALGRVLRSLLRRPQ
                     QLPSLIRTARTSNKAFAELLRCLDLCGVGIAGLDL"
BASE COUNT          530 a          799 c          783 g          426 t
ORIGIN      
        1 cagcgccaaa gtaacgcctt tgtccggtca tggccgggcg ggacttctag gcaggtctgg
       61 ccgggggcgg ccaggctctc ttggagccga ttagggatcg atatgcgagt cattcttgcc
      121 cagccacgcg gcttttgcgc cggggtcgtg cgcgccatcg atatcgtaga gaaggcgctc
      181 gataagtatg gcgagcccgt ctatgtccgc catgagatcg tgcacaacaa gcatgtggtg
      241 gacacgctca agaacaaggg cgcgcgcttt gtcgaggaac tggacgaagt gcccgaaggc
      301 gccgtcaccg tgttcagcgc ccatggcgtg ccccagtcgg tggtgaagac ggcgcaggac
      361 cgcggccttc ccgtgctgga cgccacctgc ccgctggtct ccaaggtgca caatcagggc
      421 aagcgctatg tcgcccacgg ccgcaccctg atcctgatcg gccatgccgg ccatcccgaa
      481 gtggaaggca ccatgggcca ggtcggcgcc ccggtgaccc tggtgcagaa cgaggccgat
      541 gtcgcggaga tgagcatccc caccgatacc ccggtcgcct atatcaccca gaccacgctt
      601 tcgatcgacg acaccaaggg tatcattgtc gccctgaaaa agcgcttcag cgacatcgtg
      661 ggccccgaaa ccagcgacat ctgctatgcc acccagaacc gccagacctc ggtgcgcgaa
      721 ttggccaaga tcgccgatgt gatcctggtg gtgggcgcgg ccaacagctc caactccaac
      781 cgcttgcgcg agatcggcat cgaggagggc gtgccctcct atctgatcaa tgacggcagc
      841 gagctgaagg cggaatgggt gcgcggcaag gaggtggtcg gactaaccgc cggcgcctcc
      901 gcccctgaag aactggtgcg ccatgtgatc gcggcgctgg gcgaaatcga agacgttgaa
      961 gtggaacaaa tggacggcaa gaaggaacat atcgagttcc gccttcccgc cgagttgagg
     1021 gcttaaatca tgggatcgct tccgctgcgc caggccgcca agatcggcgc ctatgtcgtc
     1081 aagaaagaac tgtcgggcgg caaatacccg ctggtgctga tgctggaacc gctgttccgc
     1141 tgcaacctag cctgcgccgg ttgcggcaag atcgattatc ccgacgagat cctcaatcag
     1201 cgcatgacct atgaacagtg catgcaggcg atcgacgatt gcggcgcccc cgccgtctcc
     1261 atcgccggcg gcgagcccct gctccaccgc gacatggcga aaatcgtgga aggctatatc
     1321 gcgcgcgaca agttcgtcat cctgtgcacc aacgcgctgc tgctggccaa gaagatcgac
     1381 cagtataagc cgcatcccaa tttcacctgg tcgatccatc tggacggcga caagggcatg
     1441 catgacaagt cggtgtgcca ggacggcacc tatgaccgcg ccatcgccgc catcaagctg
     1501 gccaaggcca agggcttccg cacccagatc aattgcacgc tgtttgacgg caccgatccg
     1561 gagcgtaccg ccaagttctt cgacgagatg atggcgatgg gcgtggacgg catgaccgtg
     1621 tcgccgggct atgcctatga gcgcgcgccc gaccagcagc acttcctcaa ccgcgaacgc
     1681 accaagaaga tgttccgcga tatcctgtcg cgcggccgcg gcggcaaggc ctgggaattc
     1741 accaattcca gcctgttcat ggatttcctg gccggcaacc agacttacga atgcaccccc
     1801 tggtccatgc cgctgctgac cgtgttcggc tggcagaagc cctgctacct cttgggcgaa
     1861 ggctatgccg cgaccttcca ggagctgatg gaaggcaccg agtgggaaaa atacggcgtc
     1921 ggcaagtatg agaaatgcgc caactgcatg gtgcattgcg gcttcgaagg caccgcggcg
     1981 acggacgtca tcaagcatcc gctgaagatg ctgccgatcc tgatgcgcgg ggtgaagacc
     2041 gatggcccga tggcgcggga aatcgacctg tcaaagcagc gtccggccga attcaccttc
     2101 tcgcgtcatg tcgagcacaa gatgtcacag atcaaggccg gcaattccaa caccacagag
     2161 atcgaggcag cggagtagtt ccgcaaaagc cttgttcgag gtccgcgccg tgcggatcag
     2221 ggacggcagt tgctgcgggc gccgcagcag cgatctcagc acgcggccaa gcgcgatgcc
     2281 gccgtcgggg cgcatcgcca ccaaagcggc cggcggcaac acatgcgtgg cgtcatcgga
     2341 aatcacccgc aaacccgcca gtggtagttt gcgcgcatag gcgaagcggg cggcgacctg
     2401 agattccata tccaccgcca aagcggctgt cgccacatgc agcccggcct tggtttcggc
     2461 tttttcgata atcacgtcac tgccgaacag ccggccctga tgggccccag gtatccggga
     2521 gaccaagcgc gacatcag
//
LOCUS       DATMDK010000003         3403 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_458551,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000003 DATMDK010000000
VERSION     DATMDK010000003.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3403)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3403)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3403
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_458551"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..548)
                     /locus_tag="VNN98_00040"
     CDS             complement(<1..548)
                     /locus_tag="VNN98_00040"
                     /inference="COORDINATES: protein motif:HMM:NF013328.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003906 - DNA-(apurinic or apyrimidinic
                     site) endonuclease activity [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0019104 - DNA N-glycosylase activity
                     [Evidence IEA];
                     GO_process: GO:0006284 - base-excision repair [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-formamidopyrimidine glycosylase family
                     protein"
                     /protein_id="HWM60501.1"
                     /translation="MPELPEVETVRLGLGPVLEGRVLTDVQMRRADLRLPFPKDFVAR
                     TKGRKVVKLWRRAKYLLADLDSGESLVIHLGMSGRMSVYTHGKQRRLGGYVYDPPPDG
                     AGSGKHDHVVFETDAPARIVFNDHRRFGLMALVNTATLDQDKLFKGIGVEPLSGAFNA
                     AALAKALDGKKTPIKSALLDQRL"
     gene            617..1369
                     /gene="ubiE"
                     /locus_tag="VNN98_00045"
     CDS             617..1369
                     /gene="ubiE"
                     /locus_tag="VNN98_00045"
                     /EC_number="2.1.1.163"
                     /EC_number="2.1.1.201"
                     /inference="COORDINATES: protein motif:HMM:NF001242.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional demethylmenaquinone
                     methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol
                     methylase UbiE"
                     /protein_id="HWM60502.1"
                     /translation="MTEKTASFGFREVPEDQKEGLVAEVFSSVAARYDLMNDLMSAGV
                     HRIWKDAMVEWLNPQPGWKCLDVAGGTGDIAFRIVDMARSRGGEAAVTVCDINAQMLG
                     EGVRRAEEKKETAIEWVCGNAEALPFPDSSFDAYTIAFGIRNVTHIDQALAEARRVLK
                     PGGRFLCLEFSKVEVPGLDTLYDAYSFKLMPKIGGLVAKDEESYRYLAESIRRFPPQA
                     KFAAMIGDAGLEQVKVRNLSGGIAAMHSAWRL"
     gene            1370..2866
                     /gene="ubiB"
                     /locus_tag="VNN98_00050"
     CDS             1370..2866
                     /gene="ubiB"
                     /locus_tag="VNN98_00050"
                     /inference="COORDINATES: protein motif:HMM:TIGR01982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016709 - oxidoreductase activity, acting
                     on paired donors, with incorporation or reduction of
                     molecular oxygen, NAD(P)H as one donor, and incorporation
                     of one atom of oxygen [Evidence IEA];
                     GO_process: GO:0006744 - ubiquinone biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-polyprenylphenol 6-hydroxylase"
                     /protein_id="HWM60503.1"
                     /translation="MSASLFRLLHAARVLAGPARAFRAKRPDAGARLGSALTRLGPAY
                     IKLGQMLATRPDIVGVEVARALEHLQDRLPPFSEKEARAEITRAFGKPVDALFSSFGA
                     SLAAASIAQVHRAQTSDDPPVRVAVKILRPGVRADFARDLEALAFFARAAERVSAEAR
                     RLRFTAVVATLADSVALELDLRMEAAAASELYERTRGEVEFRVPHIDWTRTAASVLTS
                     EWIDGISIRDTAAIAAVGRDPKQVAVLVMRSFLTQALRDGFFHADMHPGNLFIDAQGR
                     LAAVDFGIMGRLDAGMRRFMAGTLAGFLQRDYRKVAELHYEFAFVPPQHSIETFAQAL
                     RAIGEPIFGRSARDVSIARLLGQLFETTRRFDMQAQPQLVLLQKTMVVVEGVCRGLDP
                     DFDIWNAARPVAERWVSENMGPEAALTRAGETFGALGRLAQDLPQLVKNAEELSQMVT
                     EGGVRLHPDTAIQIAAEQERRARPTRVALIAVLAAIAVVLVFVLKRLF"
     gene            complement(2849..>3403)
                     /locus_tag="VNN98_00055"
     CDS             complement(2849..>3403)
                     /locus_tag="VNN98_00055"
                     /inference="COORDINATES: protein motif:HMM:NF013703.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015297 - antiporter activity [Evidence
                     IEA];
                     GO_function: GO:0042910 - xenobiotic transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MATE family efflux transporter"
                     /protein_id="HWM60504.1"
                     /translation="TFGLASLAAHQIAITIPSLTFMVPLGIGLAATVRVGLAAGAGDA
                     KAARRAGFTAIGMAAAFMCMTALVLLLWPRQIATLWLPDIAENDDVLALAVSFLHVAA
                     AFQLVDGIQVSASMSLRGLKDARGPMWLAGASYWLAGAPMCLFLGFGLGMKGFGIWLG
                     LAFGLLVAAVSLTTRFILLSKKPL"
BASE COUNT          591 a         1095 c         1137 g          580 t
ORIGIN      
        1 agccgctgat ccagcaacgc cgacttgatg ggcgtcttct tgccgtccag ggctttggcc
       61 agagcggcgg cgttgaatgc gccggataaa ggctcgacgc cgatgccttt gaacagcttg
      121 tcctggtcga gcgtcgcggt attcaccagg gccatcagcc caaagcggcg atgatcgtta
      181 aagacgatgc gggccggcgc atctgtctcg aacaccacat gatcatgctt gccggagccc
      241 gcgccgtccg gcggcggatc gtagacataa ccgcccaacc ggcgctgctt gccatgcgta
      301 tagacgctca tgcgcccgct catgcccaga tggatcacca ggctttcgcc gctgtccaga
      361 tcggccagca gatatttggc ccgccgccaa agctttacga ctttgcggcc cttggtgcgg
      421 gcgacgaaat ccttggggaa gggcaggcgc aggtcagctc gccgcatctg gacatcggtc
      481 agcacacgtc cctccagaac gggccccagg cccaggcgca cggtctcgac ttcgggaagt
      541 tcaggcatag acgggtaata aagggtcgcg ggccgcggcg gtagcctgtc cgcgcagggg
      601 cggctatgtt cccggcatga ctgagaaaac cgccagtttc ggtttccgcg aggtgcctga
      661 ggaccagaag gaaggcctgg tagcggaggt cttttcctcg gtggcggcgc gctacgacct
      721 gatgaatgac ctgatgagcg ccggcgtcca tcgcatctgg aaggatgcga tggtggaatg
      781 gctgaacccg caaccgggct ggaaatgcct ggatgtggcg ggcggcaccg gcgacatcgc
      841 ctttcgcatc gtggatatgg cgcgcagccg cggcggggaa gctgccgtca ccgtttgcga
      901 catcaatgcc cagatgctgg gcgaaggcgt gcgccgcgcc gaagaaaaaa aagagaccgc
      961 gatcgagtgg gtctgcggca atgccgaggc gctgccgttt cccgattcaa gtttcgacgc
     1021 ctataccatc gccttcggta tccgcaatgt gacgcatatc gatcaggcgc tggccgaagc
     1081 gcggcgggtg ctgaagcccg gcgggcgttt tctttgcctg gaattttcga aggtggaagt
     1141 gccggggttg gacacgctct acgacgccta ttccttcaag ctgatgccca agatcggcgg
     1201 cctggtggcc aaggacgaag aatcctaccg ctatctggcc gaaagcatcc gccgcttccc
     1261 gccccaggcc aagttcgccg cgatgatcgg cgatgccggg ttggagcagg tcaaggtgcg
     1321 caatctgtcg ggcggcattg ccgccatgca ttcggcctgg cgcctgtaga tgagcgccag
     1381 tcttttccgt cttctccatg ccgcgcgggt gctggcgggt ccggcccggg cgttccgcgc
     1441 caaaaggccc gatgccgggg cgcggctggg cagcgcgctg acacggctgg ggccggccta
     1501 tatcaagctg ggccagatgc tggcgacccg gcccgacatt gtcggggtgg aggtggcgcg
     1561 cgccctggag catctgcagg accgcttgcc gcctttttcg gaaaaagaag cccgcgccga
     1621 aatcacccgc gccttcggca agccggtgga tgccttgttc tccagcttcg gcgcttcgct
     1681 ggcggccgcc tccatcgccc aggtgcaccg ggcccagacc agcgacgacc cgccggtgcg
     1741 ggtggcggtg aagattttgc gccccggcgt gcgggcagac ttcgctcgcg acttggaagc
     1801 cttggccttt tttgcccgtg ccgccgagcg agtctcggcc gaggcgcgcc ggctgcgctt
     1861 caccgcggtg gtggcgaccc tggcggactc ggtggcgctg gaactggatc tgcgcatgga
     1921 agcggcggcg gcgtccgaac tttatgaacg cacccgcggc gaagtggaat tccgcgtgcc
     1981 gcatatcgac tggacccgca cggcggccag cgtgctgacc agcgaatgga tcgacggcat
     2041 ttccatccgc gacaccgccg ccatcgccgc ggtggggcgc gatcccaaac aggtggcggt
     2101 gctggtgatg cgcagcttcc tcacccaggc gctgcgtgac gggtttttcc atgccgacat
     2161 gcatcccggc aacctgttca ttgatgcaca aggccggctg gcggcggtgg atttcggcat
     2221 catggggcga ctggatgcgg gcatgcgccg ctttatggcg gggaccttgg ctgggttcct
     2281 gcagcgcgac tatcgcaaag tggcggagct gcattacgaa ttcgccttcg tgccgccgca
     2341 gcattccatc gagaccttcg cccaggcgct gcgcgccatc ggcgagccga tcttcggccg
     2401 cagcgcccgt gacgtctcca tcgcccggct gctgggtcaa ctgttcgaaa ccacccgccg
     2461 ctttgacatg caggcccagc cgcaactggt gctgctgcaa aagaccatgg tggtggtgga
     2521 aggcgtctgc cgcgggttgg accccgattt cgatatctgg aacgcggcgc gcccggtggc
     2581 ggagcgctgg gtcagcgaaa atatgggccc ggaagcggcg cttacgcgcg ccggcgaaac
     2641 cttcggcgcc ctgggcaggc tggcccagga cctgccgcag ctggtcaaga atgccgaaga
     2701 actctcccag atggtgacgg aaggcggcgt gcggctgcat cccgataccg ccatccagat
     2761 tgccgccgaa caggaacgcc gcgcccgccc gacgcgtgtc gccttgatcg cggtgctggc
     2821 ggcgatcgcg gtggttctgg tcttcgttct aaagcggctt ttttgagagc aggataaagc
     2881 gcgtggtcag gctcaccgcc gccaccaaca atccgaaggc cagccccagc cagatgccga
     2941 aacctttcat gcccaagccg aagcccagga acaggcacat cggcgctccg gccagccaat
     3001 aagacgcgcc cgccagccac atcggtccgc gcgcgtcttt caggccgcgc aggctcatcg
     3061 aggccgaaac ctggatcccg tctaccaact ggaaggcggc ggcgacgtgc aggaaactga
     3121 ccgccagcgc cagcacatca tcattttcgg caatatcggg cagccacaag gtggcgatct
     3181 ggcgcggcca cagcagcagc actagcgcgg tcatgcacat gaaggccgcc gccataccga
     3241 tggcggtgaa accggcgcgc cgggccgctt tcgcgtcgcc cgcgcccgcc gccagtccca
     3301 cccgcacggt ggcggccagc ccgataccca gcgggaccat gaaggtgagc gaaggaatgg
     3361 tgatggcgat ctggtgcgcc gccagcgagg ccagcccgaa ggt
//
LOCUS       DATMDK010000004         3232 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2973073,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000004 DATMDK010000000
VERSION     DATMDK010000004.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3232)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3232)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3232
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2973073"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            52..498
                     /locus_tag="VNN98_00060"
     CDS             52..498
                     /locus_tag="VNN98_00060"
                     /inference="COORDINATES: protein motif:HMM:NF039588.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016829 - lyase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MaoC family dehydratase"
                     /protein_id="HWM60505.1"
                     /translation="MAGRTFGQWKVGDRIAHDLRHTVTQEENRLLTIMTHNPQPLHLD
                     ADYAATTEFGQIVVNGLFTFALMVGISVADTTLGTLIANLGYDKVTMPKPVFIGDTLR
                     VETEVMELRESKSRPDAGIVTFRHRAFNQRDEIVCEALRSALVKKS"
     gene            495..1331
                     /locus_tag="VNN98_00065"
     CDS             495..1331
                     /locus_tag="VNN98_00065"
                     /inference="COORDINATES: protein motif:HMM:NF015297.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016829 - lyase activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA ester lyase"
                     /protein_id="HWM60506.1"
                     /translation="MRLRSLLFVPGDRPDRMEKALTSGADALILDLEDSVLPQSKVAA
                     RQAVARFLARPRSVPLFVRVNALGPETDADLAVVLPHAPDGIVLPKAEGAASLADLDR
                     RLTVRGNSQARILPIATEMPKAVFALGSYGGVTPRLCGLSWGAEDLPAVIGAITAREA
                     DGRFTPPYEMVRSLALFGAHAAQVPAIETVYPAFRDEAGLAAYAARGKRDGFSGMLAI
                     HPAQVAAINAAFAPSPDEIAWAERVVAAFAQNAGVGAIQLEGRMLDMPHLQSAKRILS
                     DR"
     gene            1405..2340
                     /locus_tag="VNN98_00070"
     CDS             1405..2340
                     /locus_tag="VNN98_00070"
                     /inference="COORDINATES: protein motif:HMM:NF012472.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HWM60507.1"
                     /translation="MAKRFSRREAAAVCGGFGASLLAGQAISRAAAETQKPLIRRTIP
                     HGGGESLPVVGVGTSEVFDVGPGDRAGPTGVVQALVAGGGSLIDTAPSYGEAEAVVGD
                     IVAATGLRARVFIATKLEDYRPGGEAAEAQECLTRLKTNKLDLLQLHNVRDPRQSLAG
                     LNALKGRGLCRYTGITTTFGNSYPAAEAIITREKPDFLEIDYAIDNRDAENRVLPAAA
                     QNGTAVLVALPFGRGRLFGIARGKPLPDWAAEFDCASWGQFFLKFILGHPAVTAVIPG
                     TSKAEHMIDNLGAGRGRLPDAGQRARMIKYVESFG"
     gene            2382..>3232
                     /locus_tag="VNN98_00075"
     CDS             2382..>3232
                     /locus_tag="VNN98_00075"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HWM60508.1"
                     /translation="MDQKPPLARLIDLTVAVEPRELKTVVLAFLFNFVLLGSYYILRP
                     VRDTMATVFGVQALQDLFTGTFIITLILAPIFAWCAAKVKLARLLPGVFWILLINILI
                     FYVFFRLVPQNRWLAAAFYWWLSVVNLFLISMFWAFMADVFSPAQATRLFAFIAAGGS
                     IGAIAGPLLTRSLAGIVGVSGLLLVAGAGFLCVILLIHALMREKEKLRARDEQAQQTT
                     LDHNLPGNPLRGFALLLKSPFLLNQAAFILLMTWIATIFYFLQTDIIAKNFPGAESRA
                     VAFADVDL"
BASE COUNT          536 a         1024 c         1057 g          615 t
ORIGIN      
        1 atcggtcacg gaaggcgcca ttctggcccg gatagaaaag gaacaggtgt gatggcgggg
       61 cggacattcg ggcaatggaa ggtcggtgac cgcatcgccc atgacctgcg ccataccgtg
      121 acgcaggagg aaaaccgcct gctcaccatc atgacccaca acccccagcc gctgcacctg
      181 gatgcggact atgccgcgac caccgagttc ggccagatcg tggtcaatgg gctttttaca
      241 tttgccctga tggtgggaat ttccgtcgcc gacaccacct tgggcacgct gatcgccaat
      301 ctgggctatg ataaggtgac catgcccaag ccggtcttca tcggcgatac gctgcgggtt
      361 gaaaccgaag tgatggaatt gcgcgagtcc aaatcgcggc ccgatgccgg cattgtcacc
      421 tttcgccacc gcgccttcaa ccagcgggac gaaatcgtct gcgaggcgct gcgcagcgcg
      481 ctggtgaaaa agtcatgagg ctgcggtcgt tgctcttcgt gccgggcgac cggccggacc
      541 ggatggaaaa ggcgctgacg tccggcgctg atgccctgat cctggacctg gaagattccg
      601 tgttgccgca gagcaaagtg gcggcgcgcc aggccgtggc gcggtttctg gcccgcccgc
      661 gcagcgttcc cttgttcgtg cgggtcaatg cgctgggccc ggagaccgat gcggacctgg
      721 cggttgttct gccgcatgcc cccgacggca tcgtactgcc caaggcggaa ggcgcggcgt
      781 cgctggccga tctggatcgc cgcctgacgg tgcgggggaa cagccaggcc cgcatcctgc
      841 cgatcgccac cgaaatgccc aaggcagtgt tcgcgctggg cagctatggc ggggtcacgc
      901 cgcgcctgtg cggcctcagc tggggggcgg aggacttacc ggcggttatc ggcgctatca
      961 cggcccgcga agcggacgga cgattcacgc cgccttatga aatggtgcgg tccctggcgc
     1021 tgttcggagc ccatgccgcc caggtgcccg ccatcgaaac cgtctatccc gccttccgcg
     1081 acgaagccgg gctggcggct tatgcggcgc gcggcaagcg cgacggtttt tccggcatgc
     1141 tggcgatcca tccggcgcag gtcgcggcga tcaacgccgc ctttgcccct tcgccggacg
     1201 aaatcgcctg ggccgagcgc gtggtcgcgg ccttcgcgca aaatgccggc gtgggggcca
     1261 tccagttgga gggccggatg ctggacatgc cgcatctgca aagcgccaag agaattttat
     1321 ccgatcggta gccgggaacc cgcgccgggg cgcaaccaga agcggttcag tctgtttctt
     1381 ctcttgggat tttggagatt gggcatggcg aagcgatttt cacgccgtga ggcggcggcg
     1441 gtgtgcggcg gttttggcgc aagcctgttg gcgggacagg ccatttcccg cgcggcggcc
     1501 gagacgcaaa aaccccttat ccggcggacc attccacatg gcggcggcga gagcctgccg
     1561 gtggtcgggg tcggcacctc cgaagtgttc gatgtcgggc cgggcgaccg ggcgggcccc
     1621 accggggttg tccaggccct ggtcgcaggc ggcggcagcc tgatcgacac cgcgccttcc
     1681 tatggcgagg cggaggctgt ggtcggcgac atcgtcgcgg ccacaggatt gcgcgcgcgt
     1741 gtcttcatcg ccaccaaatt ggaggactat cgtcccggcg gggaagcggc ggaagcgcaa
     1801 gagtgcctga cgcggctgaa gacgaacaag ctggatttgc tgcaactcca caatgtccgc
     1861 gatccgcgcc aaagcctggc gggcctcaac gcgctgaaag ggcgcgggct ttgccgctat
     1921 accggcatca ccacaacctt cgggaacagc tatcccgccg cggaagcgat catcacccgc
     1981 gaaaaaccgg acttcctgga gatcgattat gcgatcgaca accgcgacgc cgaaaaccgc
     2041 gtcctgccgg cggcggcgca gaacggcacc gccgtgctgg tcgccttgcc cttcggccgc
     2101 ggccggctgt ttggcatcgc gcggggcaaa ccgctgcccg actgggcggc cgagttcgat
     2161 tgcgccagct ggggccagtt cttcctgaaa ttcattctgg gccatccggc cgtgaccgcc
     2221 gtcattcccg gcaccagcaa ggccgagcat atgatcgaca atctgggtgc cgggcgcgga
     2281 cggttgcccg atgcgggcca gcgcgcgcgg atgatcaagt atgtggagtc gttcggctag
     2341 ggtgcgttag cgggcggctg caaatcatgg tatcggggcg catggaccag aagcccccgc
     2401 tggcgcgtct gatcgatctc accgtcgccg tcgaaccgcg ggaattgaaa acggtcgtcc
     2461 tggcgttcct gttcaatttc gtgctgctgg gcagctatta catcctgcgg ccggtgcgcg
     2521 acaccatggc caccgtgttt ggcgtccagg cgctgcaaga ccttttcacc ggcaccttca
     2581 tcatcacgct gatcttggcg ccgatcttcg cctggtgcgc cgccaaggtg aagctggcgc
     2641 ggcttctgcc gggggtgttc tggattttgc taatcaatat tttgatattc tatgtgtttt
     2701 tccgcctggt gcctcagaac cgctggcttg ccgccgcgtt ttactggtgg ctcagtgtcg
     2761 tcaacctgtt tctcatttca atgttctggg ccttcatggc ggatgtgttt tcacccgccc
     2821 aggccacgcg actgttcgcc ttcatcgcgg ccggcggcag catcggcgcc atcgccggtc
     2881 cgcttctcac ccgctcgctg gccgggatcg tgggcgtcag cggactgctg ctggtggcgg
     2941 gcgcggggtt cctgtgcgtc attcttctga tccacgcgct gatgcgggaa aaagaaaaac
     3001 tgcgcgcgcg cgatgagcag gcccagcaga ccacgctgga tcacaacctg ccgggaaatc
     3061 ccctgcgcgg cttcgcgttg ctgctcaagt cacccttcct gctgaaccag gctgcgttca
     3121 ttctgctgat gacctggatc gccacgattt tctatttcct ccaaaccgat atcatcgcca
     3181 aaaactttcc cggagcggaa agccgcgccg tcgccttcgc cgacgtggat ct
//
LOCUS       DATMDK010000005         2564 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_3202481,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000005 DATMDK010000000
VERSION     DATMDK010000005.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2564)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2564)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2564
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3202481"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..814)
                     /locus_tag="VNN98_00080"
     CDS             complement(<1..814)
                     /locus_tag="VNN98_00080"
                     /EC_number="2.4.1.227"
                     /inference="COORDINATES: protein motif:HMM:NF015022.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0050511 -
                     undecaprenyldiphospho-muramoylpentapeptide
                     beta-N-acetylglucosaminyltransferase activity [Evidence
                     IEA];
                     GO_function: GO:0051991 -
                     UDP-N-acetyl-D-glucosamine:N-acetylmuramoyl-L-alanyl-D-
                     glutamyl-meso-2,
                     6-diaminopimelyl-D-alanyl-D-alanine-diphosphoundecaprenol
                     4-beta-N-acetylglucosaminlytransferase activity [Evidence
                     IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA];
                     GO_process: GO:0007049 - cell cycle [Evidence IEA];
                     GO_process: GO:0008360 - regulation of cell shape
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0030259 - lipid glycosylation [Evidence
                     IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA];
                     GO_process: GO:0071555 - cell wall organization [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine--N-acetylmuramyl-
                     (pentapeptide) pyrophosphoryl-undecaprenol
                     N-acetylglucosamine transferase"
                     /protein_id="HWM60509.1"
                     /translation="MSIIVLSAGGTGGHLFPAQALAGELVKRGRDIVVMTDARFSNYA
                     TAFPNARIETVPSSPLNAVTAPFKIAAGIAIAFAKLLKLRPAAVIGFGGYPSVPVMLA
                     ASLARLPTAIIEQNAVVGRANRLVMNRVKVVAAAFPIARFAPTDKSKIVLTGNPLRAE
                     VEALWGAAYNVPEAGGPLRLLVFGGSQGARALSEIVPAALTRLPQAMKMRLSVVQQCR
                     PEDMDQVREIYRNAEIRAELQSFFADLPKRMAETQLVIARSGAGTVAELMAIG"
     gene            complement(811..1953)
                     /locus_tag="VNN98_00085"
     CDS             complement(811..1953)
                     /locus_tag="VNN98_00085"
                     /inference="COORDINATES: protein motif:HMM:NF013279.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FtsW/RodA/SpoVE family cell cycle protein"
                     /protein_id="HWM60510.1"
                     /translation="MMNRSDKSGFANWWFTVDRVALLCMLTLAGIGLMLAFAASPAIT
                     GGPLTAGDFRYSARQAAFATIAIGILCGVSLLNLRQIRILAAVTFASALIASFLVLFV
                     GADVLGARRELNLGPFALQPSEFLKPSFAILAAAVLADRQPLAIPKPLVTFLLLVPAL
                     AILIRQPDVGQTGLLLCLWGAMLFFWGMSFVWVGVGIGVTAVLGFLVYEIFPHVHHRV
                     QQFLSESDTGYQAGLALKAFAHGGFTGVGPGAGTIKYRIPDAHSDFIFAVAGEEFGFL
                     LCALIALMFCILTVRLLLRSAAAREPFSQLAGAGLAVVTAVQAFINMGVAVSLLPAKG
                     MTLPFISYGGSSLFAVALTMGFALAVTRLRPKISTRDDPGFFLVRA"
     gene            complement(1950..>2564)
                     /locus_tag="VNN98_00090"
     CDS             complement(1950..>2564)
                     /locus_tag="VNN98_00090"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM60511.1"
                     /translation="LYDAMGARAVKVMDMAAAAHLPGAHNWQNAALAYGAVKPFISDT
                     KAIAAAIASFPGLAHRMEDVGHIGKTVFINDSKATNADATARALAVYPDIFWIAGGKP
                     KDGGIDSLAPFFPRIRKTYLIGEAAPAFARSLDGKALYEMSGTLDRAVASAAADAAAS
                     IATSPVVLLSPACASYDQFKDFEQRGDAFRSLVSKLPRDDARVA"
BASE COUNT          540 a          815 c          841 g          368 t
ORIGIN      
        1 ggccgatggc catcagttcg gccaccgtgc ccgcgccgga ccgcgcgatc accagctgcg
       61 tctcggccat gcgcttgggc agatcggcaa aaaagctttg cagttcggcg cggatttcag
      121 cattgcggta gatctcgcgc acttggtcca tgtcttcggg acggcattgt tgcacgaccg
      181 acaggcgcat cttcatggcc tgcggcagcc gggtcagggc ggcgggcacg atctcgctca
      241 gggcacgggc gccctggctg ccgccgaaca ccagcaggcg caagggaccg ccggcttccg
      301 gcacattgta ggcggcaccc cacagggctt caacttcggc gcgcagcgga ttgccggtca
      361 gcacgatctt ggatttgtcg gtgggagcga agcgggcgat gggaaaggcc gccgccacta
      421 ccttgacccg gttcatcacc aaccggttgg cacggccgac cacggcattc tgctcgatga
      481 tggcggtggg caggcgcgcc aggctggccg ccagcatcac cggcacgctg ggatagccgc
      541 caaagccgat cacggcggcg ggcctcagct tcagcagctt ggcgaaggcg atggcgatac
      601 cggccgcgat cttgaacggc gcggtgacgg cgttcaaggg cgaggacggt acggtctcga
      661 tccgcgcatt ggggaaagcc gtggcatagt tagaaaagcg cgcgtcggtc atcaccacaa
      721 tgtcgcggcc gcgtttaacc aactcgcccg ccagcgcctg ggcagggaag agatgcccgc
      781 cggtaccgcc tgctgacaac acaatgatgc tcatgcccgc accaggaaaa aaccgggatc
      841 gtcgcgggtg gaaatcttgg ggcgcagccg cgtcaccgcc aaagcaaagc ccatggtcaa
      901 cgccaccgcg aacagcgacg agccgccata ggaaataaac ggcaaggtca tgcccttggc
      961 cggcagcagt gacaccgcca cgcccatatt gataaaggcc tgcacggcgg tcaccactgc
     1021 caatcccgct cccgccagtt gggaaaaagg ctcgcgcgcc gccgccgagc gcagcaacag
     1081 ccgcaccgtc aggatgcaga acatcaaagc gatcaaagcg caaagcagaa agccgaactc
     1141 ctcgcccgcc accgcgaaga tgaaatcgga atgcgcgtca gggatgcggt atttgatggt
     1201 gccggcgccg gggccgacgc ctgtgaagcc gccatgggca aaggctttca gcgccagacc
     1261 ggcctgatag ccggtgtcgg attcgctgag aaactgctgc acccggtgat gcacatgggg
     1321 aaagatttca tagaccagga agcccaacac ggcggtgaca ccgatcccca cgcccaccca
     1381 gacgaaggac atgccccaga aaaacaacat cgcgccccac aggcagagca acagtccggt
     1441 ctggcccaca tcgggctggc ggatcaggat cgccaaggcc gggaccagca acaggaaggt
     1501 caccagcggc ttggggatgg ccaacggctg gcggtcggcc agcaccgcag cggccaggat
     1561 cgcaaaactg ggcttgagaa attccgaagg ctgcagcgcg aagggtccca gattcaattc
     1621 ccggcgcgcg cccagcacat cggcgcccac gaacaggacc aggaaggacg cgatcaaggc
     1681 gctggcaaag gtcaccgccg ccagaatccg gatctggcgc aggttgagga gcgacacgcc
     1741 gcacaaaata ccgatggcga tggtggcgaa ggcggcctgg cgcgccgaat agcgaaaatc
     1801 acccgctgtc agcggcccgc cggtgatggc ggggctggcg gcgaaggcca gcatcagccc
     1861 gatgcctgcc aaggtcagca tgcacagcaa agccacacgg tccacggtga accaccaatt
     1921 ggcgaagccg cttttgtcgg agcggttcat catgccaccc tcgcgtcatc gcggggcagc
     1981 ttgctgacca ggctgcgaaa agcatcgccg cgctgctcga aatccttgaa ctgatcgtaa
     2041 gaggcgcagg ccggcgacag cagcaccacc ggcgaagttg cgatggaggc ggcggcgtca
     2101 gctgcggcgc tggcgactgc cctgtccaag gtgccggaca tctcatagag cgccttgccg
     2161 tccaagctgc gggcgaaggc cggcgcggct tcgccgatca gataggtctt gcggatacgc
     2221 ggaaaaaacg gcgccaggct gtcgatgccg ccgtccttgg gcttgccgcc ggcgatccag
     2281 aaaatatcgg gataaaccgc caacgcccgc gctgtcgcat cggcattggt ggccttggaa
     2341 tcattgatga agacggtctt gccgatatgg ccgacgtctt ccatgcggtg cgccaggccg
     2401 ggaaagctgg cgatggcggc ggcgatggct tttgtgtcgg agatgaaagg cttgaccgcg
     2461 ccataggcca gcgccgcatt ctgccaattg tgcgcgccgg gaagatgcgc ggcggcggcc
     2521 atgtccatca ccttgacagc gcgcgcgccc atggcgtcat acag
//
LOCUS       DATMDK010000006         2201 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2288692,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000006 DATMDK010000000
VERSION     DATMDK010000006.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2201)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2201)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2201
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2288692"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(138..641)
                     /locus_tag="VNN98_00095"
     CDS             complement(138..641)
                     /locus_tag="VNN98_00095"
                     /inference="COORDINATES: protein motif:HMM:NF042760.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbonic anhydrase"
                     /protein_id="HWM60512.1"
                     /translation="MCECKIDRRALAKLLAGAIGAGLLPGAAQAATVTALAITCIDYR
                     LVDDAVKFFDSRHMTNDYDQVSLAGASLAAVSDKFPSSNAAFWDQLGIAKELHHIKKV
                     IVVDHRDCGAYKVAFGKDYQGESAAETAQHKGVMEQVKAKLAKTHPDLAAEFYLMALD
                     GKAERVI"
     gene            812..>2201
                     /locus_tag="VNN98_00100"
     CDS             812..>2201
                     /locus_tag="VNN98_00100"
                     /inference="COORDINATES: protein motif:HMM:NF009379.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor G"
                     /protein_id="HWM60513.1"
                     /translation="MSQDIHKDHHDRIKAAPRAIALMGPHGGGKTSLLESIAAITGAV
                     PRKGSVPGGSSLGDSAPESRARQMSVEMNVLTTQYLDEEFTFLDCPGSIEFLSDTLNL
                     LPGIDAAIVVCEPDAAKVMMLQPFLKRLADAGVPHLLFINKFDKARVPLRALLTLLQE
                     ASEKPLLLRQIPIWEHGVATGFVDLALERAFAYRPHGVSEVTDIADYAREKEARFQML
                     EKLADYDEHLMEELLGDVEPPRDEVFGGLKRELAEGLVVPVMIGSAEGDNGVRRLLKS
                     LRHDVPEVAAVASRAKLAPGGDAVVQVIKTLHGGHGGKFSLARVLRGQIKDGAVLHGA
                     GGREARIGGIFALVGDKPVKRASAQAGDTVALARLEPFATGETLSTAKSGGGRLAVEQ
                     LTPVYRLAVAAPDRKDEVKLSSAIAKLCEEDPSLLFEHNAETHDLILAGQGEIHLKVA
                     VEKLQSRYGLKLT"
BASE COUNT          399 a          665 c          739 g          398 t
ORIGIN      
        1 tcgtcgcaag cggtgccttt cggttttacc gcgcgaccgg gaacgatggc gagcaaaccg
       61 ccgtgatttt gggcggtgtg attgccatca ccattctatt cgtggtgatt acgacggtgc
      121 agaaaaggaa gtgatcctca gatcacccgt tccgccttgc cgtccagcgc catcagatag
      181 aactcggcgg caagatcagg atgggtcttg gccagcttgg ccttgacctg ttccatcacg
      241 cccttgtgct gggcggtctc ggcggcgctt tcgccttgat agtccttgcc gaaggcgacc
      301 ttgtaggcgc cgcagtcgcg gtgatccacc acgatgactt tcttgatgtg atgaagttct
      361 ttggcgatgc ccagctggtc ccagaaggcg gcgttggacg aggggaactt gtccgacacc
      421 gccgccagcg aagcgcccgc cagcgacacc tggtcgtaat cgttggtcat atggcgagaa
      481 tcgaagaact tcaccgcatc gtccaccagc cggtagtcga tgcaggtgat ggccagggcg
      541 gtgacggtgg cggcctgggc cgcgccgggc aacaatcccg cgccgatggc gcctgccagc
      601 aatttcgcca gcgcgcgcct gtcaatttta cactcgcaca tgattttccc catcaaggct
      661 tcctggaaga ttctagtaca aatattgtga caaggcgcgt ccggggcctt gcattggcgg
      721 cagcgcggcg cgagcattcc ccatctggaa gggcgctcgc ccgttcgcgg acccgcccga
      781 aagccactgg tttttcaaag cggaggcgca catgtcccaa gacattcaca aggatcatca
      841 cgaccggata aaagcggcgc cgcgcgccat cgccctgatg ggcccgcatg gcggcggcaa
      901 gacctctctg ctggaaagca tcgccgccat caccggcgcc gtgccgcgca agggttcggt
      961 gccgggcggc tccagcctgg gcgatagcgc gccggaatcc cgcgcccgcc agatgagtgt
     1021 ggagatgaat gtgctgacca cgcaatatct ggacgaggaa ttcaccttcc tggattgtcc
     1081 cggttctatc gaattcctca gcgacacctt gaacctgctg ccgggcatcg atgcggcgat
     1141 cgtggtgtgc gaaccggacg ccgccaaggt gatgatgctg cagcccttcc tcaagcggct
     1201 ggctgatgcg ggggtgcccc atctgctgtt catcaacaaa ttcgacaagg cgcgggtgcc
     1261 gctgcgcgcc ctgctgaccc tgttgcagga ggccagcgaa aagccgctgc tgctgcgcca
     1321 aatcccgatc tgggagcatg gcgtcgccac cggctttgtg gatctggcgc tggagcgcgc
     1381 cttcgcctat cgcccgcatg gcgtcagcga ggtgacggac atcgccgatt atgcccgcga
     1441 aaaggaggcc cgcttccaga tgctggaaaa gctggccgat tatgacgaac atctgatgga
     1501 agaactgctg ggcgatgtcg agccgccgcg tgacgaagtg ttcggcgggc tgaagcgcga
     1561 actggccgag ggcctggtgg tgccggtgat gatcggttcg gccgaaggcg acaatggtgt
     1621 gcgccggctg ctcaaatcgc tgcgccatga cgtgcccgaa gtggcggcgg tggcaagccg
     1681 cgccaagctg gcgccgggcg gcgacgcggt ggtgcaagtg atcaagaccc tgcatggcgg
     1741 ccatggcggc aagttcagcc tggcgcgggt gctgcgcggc cagatcaagg acggcgcggt
     1801 gctgcatggc gcgggcgggc gcgaggcgcg catcggcggc atcttcgccc tggtgggcga
     1861 caagccggtc aagcgtgcga gtgcacaagc gggcgacacg gtggcgctgg cgcggctgga
     1921 gccttttgcc accggcgaga cgctctccac cgccaaatcc ggcggcgggc gcttggccgt
     1981 cgagcagttg acaccggtgt accgcctggc ggtggcggcg ccggaccgca aggatgaggt
     2041 caagctgagt tcggccatcg ccaagctgtg tgaggaagat cccagcctgc tgttcgagca
     2101 caatgccgag actcatgacc tgatcctggc ggggcagggc gagatccatc tcaaggtggc
     2161 cgtggaaaag ctgcaaagcc gttatggtct gaagctgacc a
//
LOCUS       DATMDK010000007         4333 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_461320,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000007 DATMDK010000000
VERSION     DATMDK010000007.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 4333)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4333)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4333
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_461320"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..630
                     /locus_tag="VNN98_00105"
     CDS             <1..630
                     /locus_tag="VNN98_00105"
                     /EC_number="1.1.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019514839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0004450 - isocitrate dehydrogenase (NADP+)
                     activity [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_process: GO:0006102 - isocitrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent isocitrate dehydrogenase"
                     /protein_id="HWM60514.1"
                     /translation="FNYGLIRNWPVYLSTKNTILKAYDGRFKDLFQEVFDAEFATAFK
                     EAGIIYEHRLIDDMVASSLKWSGGYVWACKNYDGDVQSDTVAQGFGSLGLMTSVLFTP
                     DGKTVEAEAAHGTVTRHYREHQKGKSTSTNSIASIFAWTRGLSHRAKLDDNDKLAKFA
                     LTMEKVCVDTVEQGFMTKDLALLVGPDQKWLTTEGFLDKVDENLKKAMA"
     gene            complement(768..1502)
                     /locus_tag="VNN98_00110"
     CDS             complement(768..1502)
                     /locus_tag="VNN98_00110"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: protein motif:HMM:TIGR00254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GGDEF domain-containing protein"
                     /protein_id="HWM60515.1"
                     /translation="MKVERNSPARPARSVAQAAYARRIEAAGGVDGVDTVMPAASVLG
                     IPESEFTPKVRDAIMGLMSEVDSLRRELSQTRARLEDVEKTADQDGMLPLLNRRAFVR
                     ELTRYIAFTGRYNTPASLIYFDLNHLKKTNDTYGHAAGDAVLAHFADVLLAHTRDSDC
                     VGRLGGDEFGVLLSHADQEQALKKADVLAAALEASPTSWNGHAIPITFAYGAFDLKSG
                     DNPDTAMARADQLMYAQKKSQRSAAE"
     gene            1691..2218
                     /gene="purE"
                     /locus_tag="VNN98_00115"
     CDS             1691..2218
                     /gene="purE"
                     /locus_tag="VNN98_00115"
                     /EC_number="4.1.1.21"
                     /EC_number="5.4.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020045098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009320 - phosphoribosylaminoimidazole
                     carboxylase complex [Evidence IEA];
                     GO_function: GO:0004638 - phosphoribosylaminoimidazole
                     carboxylase activity [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5-(carboxyamino)imidazole ribonucleotide mutase"
                     /protein_id="HWM60516.1"
                     /translation="MANRSTPLKDAARRAAGKPSVGIIMGSQSDWATMQASAHMLDAL
                     GVGYETRIVSAHRTPDRMAAYAKEAGARGLKAIIAGAGGAAHLPGMVASMTSLPVLGV
                     PVESRSLKGLDSLLSIAQMPGGVPVATFAIGEAGAKNAALHAAAILALSDVGVSKRLE
                     AWRARQTRSVARKPK"
     gene            2229..3311
                     /locus_tag="VNN98_00120"
     CDS             2229..3311
                     /locus_tag="VNN98_00120"
                     /EC_number="6.3.4.18"
                     /inference="COORDINATES: protein motif:HMM:NF004676.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-(carboxyamino)imidazole ribonucleotide
                     synthase"
                     /protein_id="HWM60517.1"
                     /translation="MKTLQKPVPPGGTIGIIGGGQLGRMLALAASRLGLKTCIYNDEA
                     EAPAFQVTPESVAAPYDDLNRLASFAEICDAVTFEFENLPAHAIAHLAERVWVAPGVH
                     ALAMTQDRLTEKSFVEKLGLKTAPFFEVSLPEQAREAFGKIGGRGILKTRRLGYDGKG
                     QAKVASADSAVRAFEELKGAPAILEGFVDFSYEASVVAARGQDGAFAAYDPPENEHEH
                     HILRRSTVPSRLTGAQVDEAKAIARQIGDALEYVGVFAVELFVAPGGDLLVNEIAPRV
                     HNSGHWTIEACACSQFEQHIRAVAGWPLGDPRRHADAVMENIIGAEADAWQALAKSGA
                     LHLYGKTEARPGRKMGHVTRLKGKQP"
     gene            3308..3607
                     /locus_tag="VNN98_00125"
     CDS             3308..3607
                     /locus_tag="VNN98_00125"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM60518.1"
                     /translation="MKGALIGLALLAATPAWAQAPATPAATPYSVETTKIGTLLDTPS
                     LLVIFKKYLPEIVANPQVDQGRDLTLPEIVQYVPDIVTPEKLAAIDAELKVLPPQ"
     gene            3777..>4333
                     /locus_tag="VNN98_00130"
     CDS             3777..>4333
                     /locus_tag="VNN98_00130"
                     /EC_number="1.2.1.11"
                     /inference="COORDINATES: protein motif:HMM:NF011456.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004073 - aspartate-semialdehyde
                     dehydrogenase activity [Evidence IEA];
                     GO_function: GO:0016620 - oxidoreductase activity, acting
                     on the aldehyde or oxo group of donors, NAD or NADP as
                     acceptor [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_process: GO:0008652 - amino acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate-semialdehyde dehydrogenase"
                     /protein_id="HWM60519.1"
                     /translation="MRNKNVAIVGATGAVGREFVGCIENRGIPLASLKLLASPRSAGK
                     TQMFRGQELTVETLTDDAFAGVDIALFSAGGSISRQYAPIAVKAGAVVVDNSSTFRTD
                     TAVPLVIPEINARRIKDHKGIIANPNCAAITTLVPLWPIHRSNPVRRLIVSTYQAASG
                     GGAALMEELEQSTRAYLDGNVYAPKV"
BASE COUNT          808 a         1326 c         1409 g          790 t
ORIGIN      
        1 ttcaactacg gcctgatccg caactggccg gtctatctct ccaccaagaa caccatcctg
       61 aaagcctatg acggccgctt caaggacctg ttccaggaag tgttcgatgc ggagttcgcg
      121 accgcgttca aggaagccgg catcatctat gaacaccgcc tgattgacga catggtggcc
      181 tcgtcgctga agtggagcgg cggctatgtc tgggcgtgca agaattacga cggcgacgtg
      241 cagtccgaca ccgtggcgca gggcttcggg tcactgggcc tgatgaccag cgtgctgttc
      301 accccggacg gcaagacggt ggaagccgaa gccgcccacg gcacggtgac gcgccattac
      361 cgcgaacatc agaagggcaa gtcgacctcg accaactcca tcgcctcgat cttcgcctgg
      421 acccgcggcc tgtcgcaccg cgccaagctg gacgacaacg acaagctggc caagttcgct
      481 ttgaccatgg agaaggtctg cgtcgacacg gtggagcagg gcttcatgac caaggatttg
      541 gcgctgctgg tcggccccga tcagaagtgg ctgacgactg agggattcct cgacaaggtt
      601 gacgagaatc tcaagaaggc gatggcgtaa cccttcaccc tccccttgag ggagggtcga
      661 attgcgaagc aattcgggga ggggtcatgc tccgagctgt gacccctccc cgaaaaatcc
      721 tcgctacgct ctgatttttc gaccctccct caaggggagg gtggaagtca ttccgccgcg
      781 cttctttgcg acttcttctg cgcatacatc aactgatcag cgcgggccat ggcggtatcg
      841 ggattgtcgc ctgacttcag gtcgaaggcg ccataggcga aggtgatggg aatggcatgg
      901 ccgttccaac tggtgggcga ggcttccagc gccgcggcca gcacgtcggc cttcttcaag
      961 gcttgttcct ggtcggcatg ggacagcagc acgccgaact catcgccgcc cagccgcccg
     1021 acgcaatcgc tgtcgcgggt atgggccagc agcacatcgg cgaaatgcgc cagcacggca
     1081 tcgcccgcgg catggccgta agtatcgttg gtcttcttca ggtgattgag atcgaaatag
     1141 atcagcgagg ccggcgtgtt gtagcggccg gtgaaggcga tatagcgcgt cagctcgcgc
     1201 acaaaagcgc ggcggttgag cagcggcaac atgccgtcct ggtcggcggt cttttccacg
     1261 tcttccagcc gcgcccttgt ctggctcaac tcgcggcgaa ggctgtccac ttcgctcatc
     1321 aatcccatga tggcgtcgcg caccttgggg gtgaattcgg attcgggaat tcccagcacg
     1381 ctggcggcgg gcattaccgt atccacgccg tccacgccgc ccgcagcttc gatccggcgg
     1441 gcataggcgg cttgggccac cgagcgggcc ggccgggcag ggctgttgcg ttcgactttc
     1501 atcgcttttc ctatcgccta ccgcttcgct gcttgaggcg gaggccgcca ttctggcccg
     1561 gcaaaggcta gccgggtgcg tttaagaatg cgtttattgt tcccaaagaa tggttaacga
     1621 gagctgaaac ggcactttcc ttgggctttt tgctccctat actgcgccgc ttcgttggga
     1681 gccgggccaa atggcgaatc gaagcactcc gttaaaagat gccgcgcgac gcgcggcggg
     1741 taagccatct gtcggcatca tcatgggcag ccagtccgac tgggcgacca tgcaggcctc
     1801 agcccacatg ctggatgcgt tgggggtggg ttatgagacc cgcatcgtct cggcccatcg
     1861 cacccccgac cgcatggcgg cctatgccaa agaggctggg gcgcggggcc tcaaggcgat
     1921 tatcgccggg gccggcggcg cggcgcatct gccgggcatg gtggccagca tgaccagcct
     1981 gccggtgctg ggcgtgccgg tggaaagccg cagcctgaag gggctggatt ctctgctctc
     2041 catcgcccag atgcccggcg gggtgccggt ggcgaccttc gccatcggcg aagccggcgc
     2101 caagaatgcg gcgttgcatg ctgcggcgat tctggcgctg tcggatgtgg gggtgagcaa
     2161 gcgcctggag gcgtggcgtg ccagacagac ccgctcggtt gctcgaaagc caaagtgaac
     2221 cttccgacat gaaaactctg caaaagccgg tgccccccgg cggcaccatc ggcatcattg
     2281 gcggtggcca gctgggccgc atgctggcgc tggctgccag caggctgggg ctcaagactt
     2341 gtatctacaa tgacgaggcc gaggcgcctg cctttcaggt gacgcccgag tcggtggccg
     2401 cgccctatga cgatttgaat aggctggcca gcttcgcgga gatctgcgac gcggtgacct
     2461 ttgaattcga gaacctgccc gcccatgcca tcgcccatct ggccgagcgg gtttgggtgg
     2521 cgccgggcgt gcatgcgctg gcgatgactc aggaccggct gaccgaaaag agttttgtcg
     2581 aaaagctcgg cctcaagacc gcgcccttct ttgaagtctc gttaccggaa caggcgcgcg
     2641 aggctttcgg caaaatcggg gggcgcggca tcttgaagac gcggcgcctg ggttatgacg
     2701 gcaagggcca ggccaaggtc gccagcgccg attctgcggt gcgggccttt gaagagttga
     2761 agggcgcgcc cgccattctg gaaggctttg tggatttctc ctatgaggct tcggtggtgg
     2821 cagcgcgggg gcaggacggc gccttcgccg cctacgatcc gccggaaaat gagcacgaac
     2881 accatatcct gcgccgctcc accgtgccct cgcgcctgac gggcgcgcaa gtggatgagg
     2941 ccaaggcgat tgccagacag atcggcgacg ccctggagta tgtcggtgtt ttcgcggtgg
     3001 aattgtttgt ggcgccgggc ggcgacctgc tggtcaatga gatcgcgccg cgggtccaca
     3061 atagcggcca ctggaccatc gaggcctgcg cctgttccca gttcgagcag catatccgcg
     3121 ccgtggcggg atggccgctg ggcgatcccc gccgccatgc cgatgcggtg atggagaaca
     3181 tcatcggggc cgaggccgat gcctggcagg cgcttgccaa aagcggcgcc ttgcatctct
     3241 atggcaagac cgaggcccgg cccggccgca agatggggca tgtcacgcgt ttgaaaggaa
     3301 agcagccatg aagggcgcgc tgatcggtct tgcacttctg gctgcgacgc ccgcctgggc
     3361 gcaggctccg gcgacccccg ccgcgacgcc ctattccgtg gaaaccacca agatcggcac
     3421 cctgctggat actccgtcct tgctggtgat tttcaagaaa tacctgccgg agatcgtggc
     3481 caatccgcag gtcgatcagg gacgggactt gaccctgccg gaaattgtgc agtatgtgcc
     3541 cgacatcgtg acgccggaaa aactggccgc gattgacgca gaactgaaag tcctaccgcc
     3601 gcaatgacga ccctgaacaa gcgcaagacc gccaagactt ttggtggggc tgggatcgcg
     3661 cgcgcttaaa gcaagaacat tcgcgaagac ccaagccccg cccaaccgga cggggctttt
     3721 tattgcccgc ggcgttggcg agagccagag ccgcataaaa aaagtggaga gagattgtga
     3781 ggaataagaa cgtcgccatt gtcggggcga ccggcgctgt gggccgcgaa tttgtcggct
     3841 gtatcgaaaa ccgcggcatt ccgctggcct cgctgaaact gctggcctcg cccagatcgg
     3901 cgggcaagac acagatgttt cgcggccagg aactgacggt cgagacgctg accgacgacg
     3961 cctttgcagg cgtggacata gccctgttct cggccggcgg cagtatctcc aggcaatatg
     4021 ctcccatcgc cgtgaaggcg ggggccgtgg tggtggacaa tagctccacc ttccgcaccg
     4081 acaccgccgt gcccctggtg atcccggaga tcaatgcccg gcgcatcaag gatcacaaag
     4141 gcatcatcgc caatcccaac tgcgccgcga tcaccactct ggtgccgctg tggcccatcc
     4201 acaggagcaa tccggtgcgg cggctgatcg tctccaccta tcaggcggcg tcgggcggcg
     4261 gcgcggcttt gatggaagag ctggaacagt ccacccgcgc ctatctggat ggcaacgtct
     4321 atgcgccgaa ggt
//
LOCUS       DATMDK010000008         3299 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2061662,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000008 DATMDK010000000
VERSION     DATMDK010000008.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3299)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3299)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3299
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2061662"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            290..856
                     /locus_tag="VNN98_00135"
     CDS             290..856
                     /locus_tag="VNN98_00135"
                     /inference="COORDINATES: protein motif:HMM:NF014664.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051920 - peroxiredoxin activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carboxymuconolactone decarboxylase family
                     protein"
                     /protein_id="HWM60520.1"
                     /translation="MRLPLIAPADLTPEQKPLYDSMRKGIASNFNDFKVLREDGALMG
                     PWNPWLHEPGIGKAIWDFTLAMTANASLPDNVRQIVILVVGARFDAAYEIYAHIAVAE
                     REGMKPERLASLVANLKPADLSAEESVAFDFAYALVRGGTLPEPLYRLAVKTFGQHST
                     NEMIYLVGLYSLVSTTLNGFNVPVPERE"
     gene            complement(869..1546)
                     /locus_tag="VNN98_00140"
     CDS             complement(869..1546)
                     /locus_tag="VNN98_00140"
                     /inference="COORDINATES: protein motif:HMM:NF021576.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2306 domain-containing protein"
                     /protein_id="HWM60521.1"
                     /translation="MTVELSSPIPGPPRPFAWPKPKYLLFALIGLIYVYVLWTNESFL
                     FNAKDPEWAHIAPFRWILLPHGMAAAFALFLGPLQFSDRLRRRFATVHRVMGYLYITG
                     AYLGAPMGIYIQYFEERLGEPRSLTVATVMDATVWIFATTMALIFIRQGKIQQHRQWM
                     TRSFACALIFLEVRLIMTLFNLPFTVAETVVWSCVAAAFPLADLVLQLQESYRSRAAP
                     VRAAGRA"
     gene            complement(1722..2297)
                     /locus_tag="VNN98_00145"
     CDS             complement(1722..2297)
                     /locus_tag="VNN98_00145"
                     /EC_number="1.14.11.-"
                     /inference="COORDINATES: protein motif:HMM:NF025024.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008198 - ferrous iron binding [Evidence
                     IEA];
                     GO_function: GO:0016705 - oxidoreductase activity, acting
                     on paired donors, with incorporation or reduction of
                     molecular oxygen [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2OG-Fe(II) oxygenase"
                     /protein_id="HWM60522.1"
                     /translation="METPKPKVGRLVISGRELFICDNFIDRAMVTAIGSDLKTMPFVR
                     KEKSRLGVPGLASSANIDAALLPRDPFFLRLRAIAEKMFPGEVLHDQRAYVNSAVYGD
                     SYYIHRDSPEDSNNVTVLYYANLIWQPDWGGETIFYKDDKDAVLAVSPRPGRLVVSRG
                     AILHRGTVPTQDCYEPRLTIAYKLDSGAPGT"
     gene            2599..>3299
                     /locus_tag="VNN98_00150"
     CDS             2599..>3299
                     /locus_tag="VNN98_00150"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HWM60523.1"
                     /translation="MTAGNSTPGLNQIQARALQLLQSGNPGAAEDVLRPLLIHGMTDE
                     LVPTLAMIRLQQGRLPQAAQLFERAREIAPRDARFAFLHGAALAGMGQWDKAVPAFQE
                     AIKREPNAVPVYLSLGDAQRKLRQPAEAQATFRKLLRLAPDNADGLLALSSVLMEMGQ
                     PADAEVPLRKALLHVQDKKAQAALHNNLSVCLGGQNRTDEALASLERAQALAPELPDM
                     DQRRIDLLYKLGRFA"
BASE COUNT          658 a          984 c         1051 g          606 t
ORIGIN      
        1 cagccgggcg ccggcgccca ggtacaagcc ggtgccgatg gcgccgccga tggcgatcat
       61 gcggttctgg cgcggcttca aggtgtggct gtagccggca tcgagggtat cgagccattg
      121 gcgcttgctg gcggcgattt ccgaaggcgt ctgtgatatt ttcatgtcat catgggaggg
      181 agtttatgcg cgatttgtca actcgcgcgc gcctgcggtc cggggttaaa atgatgcggc
      241 aatatcggat gctcgttatt cgagcattct gccaaggata aggaccgtca tgcgcctgcc
      301 tctcatcgcc ccggccgatc tgacgccgga acagaagcct ctttatgatt ccatgcgcaa
      361 gggcatcgcc agcaatttca acgacttcaa ggtgctgcgc gaagatggtg ccctgatggg
      421 accttggaac ccctggctgc atgagcccgg catcggcaag gcgatctggg acttcaccct
      481 ggcgatgacc gccaatgcca gcctgcccga caatgtccgc cagatcgtca tcctggtggt
      541 gggggcgcgc ttcgacgccg cttatgaaat ctacgctcat atcgcggtgg ccgaacgcga
      601 gggcatgaag cccgagcggc tggccagcct ggttgccaat ctgaagcctg ccgacctgtc
      661 ggcggaagaa agcgtcgctt tcgattttgc ctatgccctg gtgcgcggcg gcaccttgcc
      721 cgaaccgttg taccggctgg cggtgaagac cttcggccag cattccacca acgagatgat
      781 ctatctggtg ggtctttaca gcctggtctc gaccacgctt aacggcttca acgtgccggt
      841 gccggaacgc gagtgacaag ccgcatcttc aggcgcgccc ggcggctctg accggggccg
      901 cacgcgaccg gtaactctcc tgcaactgca ggacaaggtc ggcgaggggg aaggccgcgg
      961 cgacgcaaga ccacaccacg gtctccgcca ccgtgaaggg aaggttgaac agggtcatga
     1021 tcagccgcac ttccaggaaa atcagggcgc aggcgaagct gcgggtcatc cattgccggt
     1081 gctgctgtat cttgccctgg cggatgaaaa tcagcgccat ggtggtggcg aagatccaca
     1141 ctgtggcgtc catgacagtg gccacggtta aagagcgcgg ctcccccagc ctttcctcga
     1201 aatactggat gtagatgccc atgggggcac ccagataggc gccggtgata tacagatagc
     1261 ccatcacccg atgcaccgtg gcgaagcggc ggcgcaggcg atcggaaaat tgcagcggcc
     1321 ccagaaacag cgcaaaggcg gccgccatgc cgtgcggcag caatatccag cggaagggcg
     1381 cgatgtgcgc ccattcaggg tctttggcat tgaacaggaa gctctcattg gtccacagca
     1441 catagacgta gatcagcccg atcagggcga agagcagata tttgggcttc ggccacgcaa
     1501 acgggcgcgg cggccccgga ataggggaag aaagctcgac ggtcatgact gtgcccccac
     1561 aggctgtctg taccaattca gacatatctt gatagcggtg gcaacaagcc tttgccggcc
     1621 ggccggtaag tcctccggcg ggccgcaggg gactgatgac tgcaggaaat tccacaccag
     1681 gaccggagcg ggctctgaat agggtgcccc gtattttatt tctatgtgcc cggtgcgcct
     1741 gaatccagct tgtaagcgat ggtcaggcgc ggctcgtagc aatcctgcgt cggcacggtt
     1801 ccacgatgca gaatggcgcc gcggctgacc accaggcggc cgggacgtgg cgacaccgcc
     1861 aggacagcgt ctttatcgtc tttgtagaaa atggtctcac cgccccaatc gggctgccaa
     1921 atgaggttgg cgtaatacag cacagtgaca ttgttgctat cctcggggct gtcgcggtga
     1981 atgtaatagc tgtcgccata gacggcgctg ttgacgtagg cgcgttgatc gtggagcacc
     2041 tcgccgggaa acatcttttc ggcgatggcc cgcaaccgca gaaagaaggg gtccctcggc
     2101 agcagtgccg catcgatatt ggcggaagac gccagacccg gtacgccaag gcggcttttt
     2161 tccttgcgca cgaaaggcat ggttttcagg tcgctgccga tggcggtcac catcgcccga
     2221 tcgataaagt tgtcgcagat gaaaagttcg cggcccgaga tcaccaatcg gccaaccttt
     2281 ggtttcggcg tctccatccc tgttttcctg ccccgtgaat tcaagaatta tgctggcctg
     2341 acggatattt tgtaccagca atgctgaaac taccgcatga ccaatgtccg atccagatgg
     2401 gacattggcg ccagcgagcg cgcgtaatgc gactgagaag atcgggctta tcagctcagg
     2461 gagggcgcgc cgacgcggca cggatcccac ctgcactgcg ggaatccgcg ttcccggggg
     2521 cttgaggtat gcgaggtcaa agcggcagac tggcatgact tcgcgtgccg caaaagcgcc
     2581 cgccagagca gaggatcaat gacggcagga aattccacgc caggactgaa tcaaatccag
     2641 gcccgcgcct tgcagttgct gcagagcggc aatcccggcg cagccgagga tgtcctcagg
     2701 ccgctgctga tccacggcat gacggatgag ctggtgccga cgcttgccat gatccggctg
     2761 cagcaagggc gtttgccgca agcagcccag ttgttcgaac gggcgcgcga gattgccccg
     2821 cgcgatgcgc ggtttgcttt tctgcacggc gccgcgcttg ccggcatggg acaatgggac
     2881 aaagccgtgc ccgcctttca ggaggccatc aagcgggagc ccaatgcggt acctgtctat
     2941 ctcagcctgg gcgatgcgca acgcaagctg cggcagcccg ccgaggcgca agcgaccttc
     3001 cgcaagctgt tgcgcctggc gccggacaat gcggacgggc ttttggcgct cagttcggtg
     3061 ctgatggaga tgggccagcc tgccgatgcc gaggtcccgc tacgcaaggc gctgctgcat
     3121 gtccaggaca aaaaagccca ggccgcgctg cacaacaacc tgtcggtgtg cttgggcggc
     3181 cagaaccgga ccgacgaggc gctggcaagc ctggaacgcg cccaggccct ggcgccggag
     3241 ctgcccgaca tggatcagcg ccgcatcgat cttctctaca agctgggccg ctttgcgga
//
LOCUS       DATMDK010000009         9956 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_919346,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000009 DATMDK010000000
VERSION     DATMDK010000009.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 9956)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9956)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9956
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_919346"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..672)
                     /locus_tag="VNN98_00155"
     CDS             complement(<1..672)
                     /locus_tag="VNN98_00155"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HWM60524.1"
                     /translation="MDSAAVLNWPTGCAKDKASRQETVELLLVDDDHEFRAAACMELE
                     DLGFGVTGIPDGEAMFNHLDSGNRVDVIVLDWKMPGRRGVDFLTPLRERRISVPVIFF
                     TGVPATAHESAALDGGAIDFVDKARGLPILAKRIRRIMEAGIPRKEAADELRYGALSL
                     RPSIRRAAWRGADVNLTVTEYNIVEFMVSHAGDHVTYRAIYDCVHCAGFVAGSGDEGY
                     RTNVRS"
     gene            complement(599..1132)
                     /locus_tag="VNN98_00160"
     CDS             complement(599..1132)
                     /locus_tag="VNN98_00160"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM60525.1"
                     /translation="MTCRWKFQVGECTVACLMPVSALVAALLLAGCESRPNPTTYDAA
                     LQAVPPADTKPPQADVAILEPPKAVNRPAPHPAPHPAQPEAPVPELVGLDEQQLTDLL
                     GAPTSQDGNGPGKHWYYRMRKCTLNLSLFPNVDTHVFRLLSYEVTDNDRHGDGQRCRS
                     ELANRLRQRQGQQARNG"
     gene            1498..2766
                     /locus_tag="VNN98_00165"
     CDS             1498..2766
                     /locus_tag="VNN98_00165"
                     /inference="COORDINATES: protein motif:HMM:NF016800.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="O-antigen ligase family protein"
                     /protein_id="HWM60526.1"
                     /translation="MAALFAICGFFYLLIYAIESPIRYILYLGGKDSLILLRDGLIIA
                     PLIVLFAVQASRLRVHPAIISFATLMAFHGVVLMGTIGSFLGVAYGVKILINLLFGYF
                     AASLITSPGKRMMKIFIALWCLTLIGVLLDKFLVTFPWVGIKTIVGDLTVDVSKDWQI
                     QDTLSRRVAGFARSSIGVAMLVPLLAIVLMGQIRNGLLRAFVGIASLGAVFLTTQKGS
                     LIAFAPVAVIMTLRPRQERFWLRLWCLTAATLVIALPLATNDMHLGHGTGVFSTESLY
                     LRIADTWPHAWDWISRHQMMVFGVGLGGIGGPQRLYAPDNFNPADNLFILLYAYFGIF
                     GLLYMAAACWLALRPVTGSERRANTAIALLAFAFGYGTVLSTLEDQVAPLFVGAALGV
                     LWRETRTAFTARRVAVPVAGSLRAASSRVA"
     gene            2865..3500
                     /locus_tag="VNN98_00170"
     CDS             2865..3500
                     /locus_tag="VNN98_00170"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM60527.1"
                     /translation="MNMQVAMAQRPNGIVTFDRESFAAACARLMDLICGQGKPQMIVG
                     IPTGGMHVAEAMSDAASWLPVFPLTCRRPSTRHKGAPGLKSLIRGLPRPVLDQLRLIE
                     HAVLTRRPRAIEGGFRIEAAELERLRDAVTAAGPRPSILVVDDAVDTGTTLSVVMDAV
                     RRHAPPAANIRSAAITVTTERPLISPDYVLYYRQLCRFPWSLDATTSASRS"
     gene            3461..4165
                     /locus_tag="VNN98_00175"
     CDS             3461..4165
                     /locus_tag="VNN98_00175"
                     /EC_number="3.1.3.-"
                     /inference="COORDINATES: protein motif:HMM:NF024122.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HWM60528.1"
                     /translation="MVSRCDDKRQPVLILDLDGTLLGTNSFPHWVQHLARARFDHLGT
                     VRRAAISLAVFTAFIRRRLRLLDHAMFKYRLQQIWQDAVQGDNGAAEQQMIAELRRFV
                     RPEFAPLLADVAADRIDAVLATAAAGDYALGLGRALGFTHILATPVGRAAPRNDNVGR
                     QKRDAVLQLLLDHGWHNRPLILYTDHVDDLPLIRISQTTYWFGSDEMRLRIARDIPET
                     DLRPGLRKTHELSLSA"
     gene            4143..5156
                     /locus_tag="VNN98_00180"
     CDS             4143..5156
                     /locus_tag="VNN98_00180"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF016145.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide pyruvyl transferase family
                     protein"
                     /protein_id="HWM60529.1"
                     /translation="MNSHFRHNEDGSSNVLVNIFDTSIASDNLGDHIIMDSVWEILQP
                     LLAGVPTLRTPSHRRATLGEMWRGRRAALSIVGGTNILKSHMLIRSNWRITPLDFLVW
                     RNVVLLGVGWQQYGRGADAATRLFFRSVLSRTGLHSVRDLHTYDQLRRHVPNLVYTAC
                     PTMWMLDSAHCAQIPVRKARHAVFAVTYYRPAPEADRRLFNLLKRHYDKVFFWPQQSR
                     DVPYLRELGIEDFIPIAPDVKEYNRILAEEDVDFVGARLHGGIRALQLRRRALVIPVD
                     NRATEISKTTALPTLSRDEPEAIEDWIVNPQPTQLVLPWDAILRWKAQFASGGLQPCI
                     TWR"
     gene            complement(5132..7369)
                     /locus_tag="VNN98_00185"
     CDS             complement(5132..7369)
                     /locus_tag="VNN98_00185"
                     /inference="COORDINATES: protein motif:HMM:NF013884.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyltransferase family protein"
                     /protein_id="HWM60530.1"
                     /translation="MKTARFADNNFTILRLLLALLVVLGHFRLLAGVASPSWPFNYAA
                     TAVDCFFVVSGYLITNSFDQDPDLRRFYIKRFFRLYPLYIAVVAIQTIILGILAQGGF
                     AASAGPLLRYFLANAVFANFLQHDIGGLTALHVPGLNPSLWTLKIEFGFYLILPALWW
                     LVQRYGAKVLAAIFVFSALFYAIFKANGHYDIAKQLPGQLQFFVLGIAAYRYRGWFTV
                     KPAGPLLAAAAAVLVTALLRWHPPVLNPLAVAAFVALAALTTPALRPVRDISYGVYLA
                     HGPVIQLAILTGFYRGDGVGLGAVLAVVLALAFVAERLIEAPGIAWGRRLLRAASRVP
                     VPVRSDAPLSVLVLNDFCYVQGGASKVAIDEAVSLARAGAQVTFLGAVGPPCEALNEP
                     GLTVECLDQRELLDVTRHPGVALQGLWNARAYRRVRKILADMPPGQTIVHLHGYTKAL
                     TASPVRAARRLGIPLVCTLHDFYAACPNGAFFDYASLKPCPKVALSGACISARCDKRR
                     YAHKLYRVVRGFVQLWVSRFPGLVQNYISLSERSISLLSRYLPRQARIFPLANMMDIA
                     RQPQVAAAQSGTLLYVGRLDAEKGVHLLAETAAKLGLAVTFVGDGPLRAEIEAIAGMT
                     VTGWLPREEVHQWLGRARCLVFPSLWYETFGLVVDEAAARGVPAIVSDISAAAERVKD
                     TVTGWVFRSGDADDLARCLILTRDDGRLQAVGDAAYRSFWRDASTEELHTRDLMRIYR
                     QVMQG"
     gene            complement(7366..8445)
                     /locus_tag="VNN98_00190"
     CDS             complement(7366..8445)
                     /locus_tag="VNN98_00190"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF025025.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HWM60531.1"
                     /translation="MDTMPAVALQEEAEFWITSDLAGPRAVDVSVVIPTYNAGATLER
                     AVRSALDQSLGDIEVIVVDDASRDFSWNLVGDLLIEDARIRGIRNKQNQGKPVGMNRA
                     IALARGRWIAVLDADDWFERDRLATLIALGERQQVDMVADNQSFHDALAGQMVGTAWP
                     SRAKGWGAQEWALTFDDFLLGSDAYDTFSFGMLKPVMRRDFIRRTGLGYEAGARNGHD
                     FFYLLQFFLQGGKAAICDRPLYCYTQPFGAVSRQWSNASRRRYDFQTACDINRRYLAA
                     ALGFLTSSQAARLECRNRRLECLEYYYCAKERLAASDLPGASALILEHPAIFGYLLRS
                     LSRRYLNRPGSAAVQRVAKRARAAP"
     gene            complement(8458..8856)
                     /locus_tag="VNN98_00195"
     CDS             complement(8458..8856)
                     /locus_tag="VNN98_00195"
                     /inference="COORDINATES: protein motif:HMM:NF016056.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015035 - protein-disulfide reductase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DCC1-like thiol-disulfide oxidoreductase family
                     protein"
                     /protein_id="HWM60532.1"
                     /translation="MSAPDDIPSGDIWVVYDGQCPFCSSYVLLYRLRELAGQVHLIDA
                     RSGHPLVEAIRHRGFDLDAGMAVAFGGRIYWGAEAMNILALLGSDGTVFNRLNRLLFH
                     RVGLARVLYPLLVRGRLLTLRLLGRGLIGT"
     gene            complement(8843..>9956)
                     /locus_tag="VNN98_00200"
     CDS             complement(8843..>9956)
                     /locus_tag="VNN98_00200"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM60533.1"
                     /translation="GTYLMVGAFVVIALAQPMAARLLPASVDGSWLRDRTAGLIWACA
                     VGAHLGNYFVSGWTKLQTGGSDKLFWLFHNPTQTSILIGLERGDNPLAAWPWAVQGSW
                     NAMVAAGIALNLFVLGTQLAAPLALARRRSLMLFTLLFDLFHVAVYLTLGALFFFWIA
                     VNIIIYISAKRLDEKSFTPGMKVVALLAIAVGHFFFYTSHLGWLDGAKLASPRFTAET
                     RDGRIAPVPSVYFGIASYSIAQTAMFIPEGHFPMRLGGNTYNRAEWRDAQSCGAETRP
                     RQDTGVSLPSIFSMVRQTDTAMRQHPAVKDLNLYYIYPHHMVANPAVFGDFNRLKIGD
                     IVRYHYIVDSVCLRLKDGALVRDVHKTTDYPINVRS"
BASE COUNT         1929 a         3191 c         3054 g         1782 t
ORIGIN      
        1 ggaccggaca ttggtgcgat acccctcatc tcccgagccg gcgacaaaac cggcgcaatg
       61 aacgcagtca tatatggcgc gataggtgac gtgatcgccg gcgtgcgaaa ccatgaactc
      121 cacaatattg tattcggtta cagtcagatt gacgtcggca ccgcgccagg cggcccggcg
      181 tatgctgggc cgcaaggaaa gagcgccgta gcgcaactcg tccgccgcct ccttgcgcgg
      241 gattcccgct tccatgatgc ggcgaatgcg cttggccagg atgggcaggc ctcgcgcctt
      301 gtcgacaaaa tcgatcgctc cgccgtccag cgcggcgctt tcatgggcgg tcgccggaac
      361 gccagtgaag aaaatgacgg gaaccgagat tcgccgttcc ctgagcggtg tcaggaaatc
      421 cacaccgcgg cggccgggca tcttccaatc cagcacgatg acatccacgc ggtttcccga
      481 atcgagatga ttgaacattg cctcgccgtc gggaatgccg gtgacgccga agccgagatc
      541 ttccagttcc atgcaggcgg cggcacggaa ttcatgatca tcgtccacca gcagcagttc
      601 aaccgtttct tgcctgctgg ccttgtcttt ggcgcagcct gttggccagt tcagaacggc
      661 agcgctgtcc atcgccatgt ctgtcattgt ctgtcacctc gtatgaaagc aaacggaaaa
      721 cgtgggtatc cacgttggga aacaaggaaa gattcaacgt gcatttgcgc atgcggtagt
      781 accaatgttt gccggggccg ttgccgtcct gcgatgtcgg agcacccaac aggtcggtga
      841 gctgctgctc atccagcccc accagttccg gaaccggggc ttcaggctgc gccgggtgcg
      901 gcgccggatg cggcgccgga cggttcacag cctttggcgg ctcaagaatg gcaacatcgg
      961 cttggggcgg ttttgtgtcc gcaggcggca cggcctgcaa tgccgcatcg tatgtggtgg
     1021 gattgggacg gctctcgcaa cccgccagca gcaacgccgc gaccaacgcc gaaaccggca
     1081 tcaggcaagc caccgtgcat tctccaactt gaaatttcca acggcaggtc aatcaggtca
     1141 ctccattgct gcaccgcagc caacacgatt cccccaaccc gccaagctcc aaggtaacca
     1201 gcgaaattta aactttcaac acgacattgc accgcacacg ttgtttcatt tcggaaacac
     1261 tattggctgc tcattgcaac agcacatcgc tctttgtgcg gtcactttaa ggtcacagcg
     1321 cgtcctgtcg gatgcagtct gatcacagat ttgccaccat acgcgccttg cgggccaacc
     1381 ttggcggcgc aagctgcagc ttcatcattc gaagctgcgt ccgtggaact ttttcgacca
     1441 acaaacagca agaccattgt cgctgaccgc gataccggga atctcgaagg tccgcgcatg
     1501 gcggccttgt ttgcgatttg cggattcttc tacctcctca tctacgccat cgaatctccc
     1561 atacgctaca ttctgtatct cggcggcaag gacagcctga tattgctgcg agatggcttg
     1621 atcatcgcgc cgctgatcgt gctttttgcc gtccaggcca gccggttacg cgtacacccg
     1681 gctatcataa gcttcgcgac cctgatggcg ttccacggcg tggtgctgat gggaactatc
     1741 ggctcgttcc tgggcgtggc ttatggcgtt aagattctga tcaacctgct gttcggctat
     1801 ttcgcggcct cgctcattac ctcgcctgga aagcgcatga tgaaaatttt catcgcgctg
     1861 tggtgtctta cccttatcgg tgtcctgctg gacaagttcc tggtcacatt tccctgggtg
     1921 ggtatcaaaa ccattgtcgg tgatttgacg gtggacgttt ccaaggattg gcagatccag
     1981 gacacgttga gccgccgcgt tgccggcttc gcccgcagct cgatcggcgt cgccatgctg
     2041 gtgccgctgc tggcgatcgt gctgatggga cagattcgca acggactgct gcgcgccttt
     2101 gtcgggatcg cttccctggg cgctgttttt ctaacgaccc agaaaggctc gctgatcgcc
     2161 ttcgcaccgg tcgcggtaat catgacgctt cgcccccggc aggaacgttt ctggttgcgg
     2221 ctttggtgcc tgacagccgc aacacttgtc atcgcgctgc ctttggcgac caacgatatg
     2281 catctgggtc atggcacggg tgtgttcagc accgaatcgc tctacctgcg catcgccgat
     2341 acctggcccc atgcctggga ttggatatcg cgccaccaga tgatggtttt cggagtcggg
     2401 ctcggcggta tcggcggacc gcagcggctt tacgcgcccg acaatttcaa ccctgccgac
     2461 aatctcttca tcctgctcta tgcctatttc gggatattcg gcctgctcta tatggcagcc
     2521 gcttgctggc ttgcgctgcg gccggtcaca gggtcggagc gccgcgcgaa taccgccatc
     2581 gccttgctgg cttttgcctt cggttacggc acggtccttt caactctgga ggatcaagtc
     2641 gctccgcttt ttgtgggcgc agccttgggt gtgttgtggc gtgaaacccg taccgccttc
     2701 acggcgcgcc gcgtagccgt gcctgtcgcc gggtccctgc gcgcggcgag ttcacgagtt
     2761 gcatagtcct attttgaaca cagccataac acagcctggt cacccgcata ggcactctcc
     2821 cgttgctagg cttgcgccgc aaaccccacg ggaaagcaag ccagatgaac atgcaagtcg
     2881 ccatggcgca gcgcccgaat ggcattgtga cattcgaccg ggaaagtttt gccgccgcct
     2941 gtgcgcggct gatggacctg atatgtgggc agggaaaacc gcagatgatc gtgggcatac
     3001 ccacgggcgg catgcatgtc gccgaagcga tgtcggatgc cgcctcctgg ctgccggtat
     3061 tcccgctgac ctgccggcgg ccctcgaccc ggcacaaagg cgcgccgggg ctcaaatccc
     3121 tgatccgcgg cctgccgcgg ccggtgctgg accagttgcg cctgatcgag catgccgtgc
     3181 tgacgcgccg gccgcgtgcc atcgagggcg gcttccggat cgaggcggcg gagctcgaac
     3241 ggctacgcga cgcggtgacg gcagccggac cccggccgtc cattctggtg gtggacgacg
     3301 ccgtggatac cggcaccacc ctgtcggtgg tgatggatgc ggtgcgccgc cacgcgccgc
     3361 cagccgcgaa tatccgcagc gcggccatca ccgtgacgac cgaacgtccg ctgatttcac
     3421 ccgattatgt cctctactat aggcaactat gccgttttcc atggtctctc gatgcgacga
     3481 caagcgccag ccggtcctga tactggatct tgatggcacc cttctgggca ccaacagctt
     3541 tccgcattgg gtgcagcatc tggcgcgcgc gcggttcgat catctgggca cagtgcggcg
     3601 ggccgccata tcgctggcgg tttttaccgc attcatccgg cgccggctgc ggctgttgga
     3661 tcacgccatg ttcaaatacc ggctgcagca gatctggcag gacgcagtgc agggcgataa
     3721 tggcgctgcc gagcagcaga tgatcgcgga actgcgccgg ttcgtccgcc ctgaattcgc
     3781 gccgctgctg gcggacgtgg cggcggatcg gatcgacgca gtgctggcaa cggcggcggc
     3841 cggtgattat gcgctggggc tgggccgggc gctgggcttt acccatatct tggccacgcc
     3901 ggtgggccgc gccgcgccgc gcaacgacaa tgtggggcgg caaaagcgcg atgccgtact
     3961 gcaattgctg ctggaccatg gctggcacaa ccggccgctc atcctttaca ccgatcatgt
     4021 cgacgatttg cccctcatcc ggatcagcca gacgacctac tggttcggct ccgatgaaat
     4081 gcgcttgcgg atcgcgcggg acataccgga aaccgacctt cgcccaggcc tcaggaaaac
     4141 gcatgaactc tcactttcgg cataacgaag acggcagcag caacgtgctg gtgaacatct
     4201 tcgatacctc catcgccagc gataatctgg gcgaccacat catcatggat tcggtgtggg
     4261 agattttgca gccgctgctg gccggggttc ccaccttgcg cacgccgtcg caccggcgcg
     4321 ccacacttgg cgagatgtgg cggggacgcc gggcggcgct ttcgattgtc gggggcacca
     4381 acatcctcaa gtcccatatg ctgatacgca gcaactggcg catcacgccg ctcgactttc
     4441 tggtctggcg caatgtcgtc ctgctgggcg tgggctggca gcaatatggc cggggcgccg
     4501 atgcggcgac ccgcctgttc ttccgctccg tcctgtcgcg caccgggctt cactcggtcc
     4561 gcgacctgca cacctatgat cagttgcggc ggcatgttcc caacctggtc tataccgcat
     4621 gccccaccat gtggatgctg gattccgccc attgcgcgca gatacccgtg cgcaaagcac
     4681 ggcatgcggt tttcgcggta acctattacc ggcccgcgcc ggaggcggat cgccggctgt
     4741 tcaacctgct caagcgccat tacgacaagg ttttcttctg gccacagcaa agccgtgacg
     4801 tgccatatct gcgcgaactc ggcatcgagg acttcatccc gatcgcgccg gacgtgaagg
     4861 aatacaaccg catcctggcg gaggaagatg tcgatttcgt gggcgcacgg ctgcatggcg
     4921 gcatccgcgc cttgcagctt cggcgacgtg ccctggtcat tcccgtcgac aaccgcgcca
     4981 ccgaaatcag caagaccacg gccctgccca ccctgtcgcg cgacgagccg gaggcgatcg
     5041 aggattggat cgtcaatccc cagcccaccc aactggtcct gccctgggac gcgatcctgc
     5101 gctggaaggc gcagttcgcc agcggcggcc ttcaaccctg catcacctgg cgatagatcc
     5161 gcatcagatc gcgggtgtga agctcttcgg tggaggcgtc tcgccagaag ctgcggtaag
     5221 cggcatcgcc caccgcctgc aggcggccat cgtctcgcgt caggatcagg cagcgcgcca
     5281 gatcgtcggc atcgccgctg cgaaacaccc agcccgtgac ggtgtccttc acccgctccg
     5341 ccgcggcgga aatgtcgctg acaatggcgg gaacgccccg cgccgccgcc tcatccacca
     5401 ccagtccgaa ggtttcatac cagaggctgg ggaacaccag gcagcgggcg cggcccagcc
     5461 attgatggac ctcctcgcgc ggcagccatc cggtcacggt catgcccgct atcgcttcga
     5521 tctcggcgcg cagcgggccg tccccgacaa aggtcacggc caagccgagc ttggccgccg
     5581 tttctgccag caggtgcacg cccttttccg catccagccg ccccacatat agaagtgtgc
     5641 cgctttgcgc cgccgccacc tgcggctggc gggcgatgtc catcatattg gccagcggga
     5701 aaatgcgcgc ctgccggggc aggtagcgcg acagcaggct gatcgaacgc tcggacaggg
     5761 aaatgtaatt ctgcaccagg cccgggaaac gcgaaaccca gagctgcacg aagccgcgca
     5821 cgacgcggta gagcttgtgg gcatagcgcc gcttgtcgca gcgggccgag atgcaggcgc
     5881 cggacagcgc gaccttcggg cagggcttga ggctggcata gtcgaaaaaa gcgccgttcg
     5941 gacaggcggc ataaaaatcg tgcagggtgc agaccagcgg gatgcccagc cgccgtgctg
     6001 cccggaccgg gctggcggtc agcgccttgg tgtagccgtg cagatggaca atggtctggc
     6061 cgggcggcat gtcggcaaga atcttccgca cccggcgata ggcgcgcgcg ttccataagc
     6121 cttgcagcgc gacgccggga tggcgcgtca catccagaag ctcgcgctga tccagacact
     6181 ccacggtgag gccgggttcg ttcagcgcct cgcagggcgg ccccaccgcg cccaggaagg
     6241 tcacctgggc gccggcgcgg gccaggctga ccgcttcgtc gatggcgacc ttgctggcac
     6301 cgccctggac ataacaaaaa tcgttcagca ccagcaccga cagtggcgca tcggagcgta
     6361 ccggaactgg cacgcgcgat gcggcgcgca gcaagcggcg gccccaggcg atgccgggcg
     6421 cctcgatcag ccgctcggcg acaaaggcca gcgccagcac caccgccagg accgcaccaa
     6481 gcccaactcc atcgccgcgg taaaaacccg tcaggatggc aagctggatt accgggccat
     6541 gcgccagata gacgccatag gaaatatcac gcaccggccg cagcgcgggg gttgtcagcg
     6601 ctgccagtgc gacgaaggcg gccaccgcca gcggattcag taccggcgga tgccagcgca
     6661 gcagtgcggt caccagtacc gcggcggcgg ccgccaacag cggcccagcg ggcttgacgg
     6721 tgaaccagcc gcgatagcga taggcggcaa tgcccagcac gaagaattgc aactgcccgg
     6781 gcaactgctt ggcgatgtcg taatgcccgt tggctttgaa gatggcatag aacaatgcgg
     6841 agaaaacgaa gatcgccgcc aggaccttgg cgccgtagcg ttgcaccagc caccacagcg
     6901 ccggcaggat cagatagaat ccgaattcta tcttcagcgt ccacaggctg ggattgaggc
     6961 ccggcacatg cagggccgtc agcccgccga tatcgtgctg caggaaattg gcgaacacag
     7021 cattggccag gaaatagcgc agcagcgggc cggcactggc ggcgaaaccg ccctgcgcca
     7081 ggatccccag aatgatagtc tggatcgcga ccaccgcgat atagagcggg taaagacgga
     7141 agaaccgctt gatataaaag cgccgcaggt ccgggtcctg atcgaagctg ttggtgatga
     7201 gataaccgct gacgacgaag aagcagtcca ccgccgtcgc ggcatagttg aacggccagg
     7261 acggcgaggc cacaccggcc agcagccgga aatgtcccag caccaccagc agcgccagca
     7321 ggagccgcaa aatggtgaag ttgttgtcgg caaagcgcgc ggttttcatg gcgccgcccg
     7381 cgcccgtttg gcgacgcgct gcaccgccgc cgaacccggc cggttcagat aacgccggga
     7441 aaggctgcgc agcagataac cgaagattgc ggggtgttcc aggatgagcg cggatgcgcc
     7501 gggcaggtcg ctcgcggcca gccgctcctt ggcgcaatag taatattcca gacattccag
     7561 ccggcggttg cggcattcca ggcgcgcggc ctgcgaggac gtcagaaatc ccagtgccgc
     7621 agcgagataa cgccggttga tgtcgcaggc ggtctggaaa tcgtaacgcc ggcgcgatgc
     7681 attcgaccat tgccgtgaaa ccgcgccgaa gggctgggtg tagcaataga gcggccgatc
     7741 gcaaatcgcc gcttttccgc cctgcagaaa aaattgcagc agatagaaga agtcatgccc
     7801 attacgcgcg cctgcctcat agccaaggcc ggtgcggcgg atgaaatccc gccgcatcac
     7861 cggtttcagc atgccgaagc tgaaagtgtc ataggcgtcc gatcccagca gaaaatcatc
     7921 gaaggtcaga gcccattcct gggcgcccca ccccttggcg cgagacggcc atgcggttcc
     7981 caccatctgt ccggccaggg catcgtggaa agactggttg tcggcgacca tgtcgacttg
     8041 ctgccgttcg cccagcgcaa tcagagtcgc gagacgatca cgctcgaacc agtcatcggc
     8101 atccagcacc gcgatccagc ggccccgcgc cagcgcgatg gcgcggttca tgccgacggg
     8161 cttgccttga ttttgcttgt tgcggatgcc ccggatgcgg gcatcctcga tcagaagatc
     8221 gccgaccagg ttccaggaaa aatcgcgtga cgcgtcgtcc accacgatca cctcgatgtc
     8281 gcccaggctc tggtccagtg cgctgcgcac cgctcgttcc agggtcgccc ccgcattgta
     8341 ggtcggtatc accacgctca catcgacagc gcgcggaccg gcaaggtcgg acgtgatcca
     8401 gaattccgct tcttcctgaa gcgcgacggc cggcatggtg tccattttca cactccgtca
     8461 agtcccgatc agcccgcgcc ccagcaggcg caaggtcaga aggcggcccc gcaccaatag
     8521 gggatagagc acccttgcca ggccgacacg gtggaacagc agccggttca ggcgattgaa
     8581 gaccgtgccg tcgcttccca gcagagccag gatgttcatc gcctctgcgc cccaatagat
     8641 ccgcccgccg aacgccaccg ccatccccgc atccagatcg aagccgcggt gccggatcgc
     8701 ctcgaccagg ggatgacccg accgggcgtc gatgagatgc acctgtcccg ccagttcacg
     8761 cagccggtac agcagcacat aggaactgca gaaagggcac tggccgtcat agaccaccca
     8821 gatatcgccg gagggaatat cgtcaggagc ggacattgat gggataatcc gttgtcttgt
     8881 gcacgtcccg caccagcgcg ccgtccttca aacgcaagca gaccgagtcc acgatatagt
     8941 gatagcggac gatgtcgccg atcttcagcc ggttgaagtc gccgaacaca gcgggattcg
     9001 ccaccatatg gtggggatag atataataga gattcagatc cttgacggcc ggatgctgcc
     9061 gcatcgccgt atcggtctgg cgcaccatcg aaaaaatact gggcagcgag acgccggtat
     9121 cctggcgggg ccgtgtctcg gcgccgcaac tctgggcgtc gcgccattcc gcacggttgt
     9181 aagtgttgcc gcccaggcgc atgggaaaat gcccctcagg aatgaacatc gcggtctggg
     9241 cgatggaata ggaagcgatg ccgaaataga ctgacggcac cggcgcgatg cgcccgtcac
     9301 gggtttcggc ggtgaagcgc gggctggcca gcttggcgcc gtcgagccag cccaggtgac
     9361 tggtgtagaa gaagaaatgc cctaccgcga tggccagcag ggcgacgacc ttcatgcccg
     9421 gcgtgaagga cttctcgtcc agacgcttgg ccgagatgta gattatgata ttgaccgcga
     9481 tccagaagaa gaacagcgct cccaatgtca gatacaccgc gacatggaac aggtcgaaca
     9541 acagggtgaa cagcatcagg ctgcgccgcc gcgccaatgc cagcggcgcc gcgagttgcg
     9601 tgcccagaac gaaaagattg agcgcgatgc cggcggcgac catggcgttc cagctgccct
     9661 gcactgccca cggccaggcc gccaggggat tgtcgccccg ctccagcccg atcagaatcg
     9721 aagtctgggt ggggttgtga aacagccaga acagcttgtc gctgccgccg gtctgcagct
     9781 tggtccagcc cgagacgaaa taatttccca gatgcgcgcc gacggcgcag gcccagatca
     9841 ggccggcggt gcggtcgcgc agccaactac catccacgct tgccggcagc agccgcgctg
     9901 ccatcggttg cgccagcgcg atcacgacga aggcccccac cataagataa gtgccg
//
LOCUS       DATMDK010000010         2044 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2521942,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000010 DATMDK010000000
VERSION     DATMDK010000010.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2044)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2044)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2044
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2521942"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..425)
                     /locus_tag="VNN98_00205"
     CDS             complement(<1..425)
                     /locus_tag="VNN98_00205"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM60534.1"
                     /translation="MNRLRCFILVGFALLAAAMTPALAADKPPAPQTNQAPQANQANQ
                     VNFGKADNVLDLKPALSPYRAPGGTAEADGSSWYIVQVSNDSVRPATRVLLAGQPPRA
                     ALSLLPRRSRPAILAVASSDSGTVVETASAYGRRAWRVIV"
     gene            complement(452..1078)
                     /locus_tag="VNN98_00210"
     CDS             complement(452..1078)
                     /locus_tag="VNN98_00210"
                     /EC_number="2.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024812.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family protein"
                     /protein_id="HWM60535.1"
                     /translation="MVKAAFAKTGPIAFMRGLTFPGGQQPVIRGQGIYLRYPRIADFP
                     VWSKLRAESREFLTPWEPVWADDELTRGAFRRRIKRYQKETRLDSAYVFFVLRESDNA
                     LLGGCTLSNVRRGVTQCCTLGYWIGAKFARQGYMTHAVKALAPFIFRTLGLHRIEAAC
                     LTGNGASQKLLARAGFREEGLARRYLLINGEWADHLLFALLKEEAQLG"
     gene            complement(1078..>2044)
                     /locus_tag="VNN98_00215"
     CDS             complement(1078..>2044)
                     /locus_tag="VNN98_00215"
                     /inference="COORDINATES: protein motif:HMM:NF017044.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="pitrilysin family protein"
                     /protein_id="HWM60536.1"
                     /translation="FEQAELERERQVVLQELGQARDTPDDIVFDHLQSAIFKAQPLGW
                     PILGEEATVNEFDRDMLKSYMATQYRLEGMTLIASGAVNHAEIVALAEEKCGGLNRGV
                     VPATAPAHYVGGDFRAVEDLEQAHVAYAFPGLSNADPDYFVAQIYATALGGGTSSRLF
                     QEAREKRGLCYSIYAFSSGFQDSGFLGIYAGTGESEAAEISAVIAGEMEAMAGNLTDA
                     EVARARAQLKVSLLMGMERPGTRAEQIAGQLFALGRVQSAAEIVAQLDAIDAAIVKRY
                     AAQVMQGVPADSGPTIAAVGPIGKLESHTAFARRFGRMSVASAAE"
BASE COUNT          379 a          666 c          646 g          353 t
ORIGIN      
        1 acaatcaccc gccaggcgcg gcggccataa gcgctggcgg tttccaccac cgtgccggaa
       61 tccgaactgg ccaccgccag gatggcggga cggctgcggc gcggcagcaa cgacaaagcg
      121 gcgcgcggcg gctggcccgc cagcagcacg cgggtggcgg gccgcacgga atcattgctg
      181 acctgcacaa tgtaccagct ggagccgtca gcctcggcgg tgccgcccgg cgcgcgatag
      241 ggcgacaaag cgggcttcag gtcgagcaca ttatcggctt tgccgaaatt gacctgattg
      301 gcttgatttg cctgcggcgc ttgatttgtc tgcggcgctg gcggcttgtc cgccgcaaga
      361 gcgggcgtca tcgccgccgc aagcagcgca aaaccaacga gaataaagca gcgcaatctg
      421 ttcatgaatc tctgtgtcgc cggaacgcgc gctaacctag ctgcgcttct tccttgagca
      481 aagcaaatag caggtgatcg gcccattcgc cgttgatcag cagataacgc cgcgccagac
      541 cttcctcgcg gaacccggcg cgcgccagca gcttttgcga ggcgccattg ccggtcagac
      601 aggccgcctc gatgcggtgc agtcccaggg tgcggaagat gaaaggggcc agcgctttca
      661 ccgcatgggt catatagcct tggcgggcga attttgcgcc gatccaataa cccagggtgc
      721 agcattgggt gacgccgcgc cgcacattgg acaaggtgca gccgcccaac agcgcattgt
      781 cgctttcgcg cagcacgaag aagacatagg ccgaatccag ccgcgtttct ttctggtagc
      841 gcttgatgcg gcggcgaaag gcaccgcgcg tcagctcatc atcggcccag accggctccc
      901 agggggtgag gaattcgcgg ctttcggcac gcagcttgga ccagaccgga aaatcggcga
      961 tgcggggata gcgcagatag ataccttggc cgcggatgac cggctgctgg ccgcccggaa
     1021 aggtgagccc gcgcatgaaa gcgatgggac cggtcttggc gaaagcagct ttgaccatta
     1081 ttccgccgcg ctcgccacag acatgcggcc gaagcggcgc gcaaatgccg tgtgcgattc
     1141 cagtttgccg atcgggccga ctgccgcgat ggtggggccg ctgtccgcag gaacgccttg
     1201 catcacctgc gccgcatagc gtttcacgat ggcggcatcg atcgcatcga gttgcgccac
     1261 gatttccgcc gccgactgga cccgtcccag cgcgaacaat tgcccggcga tctgttcggc
     1321 acgggtgccg ggccgctcca tgcccatcaa cagcgaaact ttcagctggg cgcgggcgcg
     1381 cgccacttcg gcgtccgtca gattgcccgc catggcttcc atctcgccgg cgatcacggc
     1441 ggagatctcc gccgcttcgc tttcgccggt gccggcatag atccccaaga agccggaatc
     1501 ctggaacccg ctggagaagg catagatgga atagcaaagc ccgcgctttt cgcgcgcttc
     1561 ctggaacagg cgcgaggagg tgccgccgcc cagcgccgtg gcgtagatct gagccacgaa
     1621 ataatcagga tcggcattgg agaggccggg aaaggcatag gccacatggg cctgttccaa
     1681 atcttccacg gcccggaagt cgccgccgac ataatgcgct ggcgctgttg ccgggaccac
     1741 gccccggttg aggccgccgc atttttcttc cgccagcgcc acgatctcgg catggttcac
     1801 cgcgcccgag gctatcaggg tcatgccctc cagccggtat tgcgtcgcca tgtaggattt
     1861 tagcatgtcg cggtcgaatt cattcaccgt cgcctcctcg cccaggatcg gccagcccag
     1921 cggctgagcc ttgaagatcg ccgattgcag atggtcgaac acgatatcgt cgggcgtgtc
     1981 gcgcgcctgc cccagctcct gcagcaccac ctggcgctcg cgctccagtt ccgcctgttc
     2041 gaaa
//
LOCUS       DATMDK010000011         4836 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1149077,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000011 DATMDK010000000
VERSION     DATMDK010000011.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 4836)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4836)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4836
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1149077"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..832
                     /locus_tag="VNN98_00220"
     CDS             <1..832
                     /locus_tag="VNN98_00220"
                     /inference="COORDINATES: protein motif:HMM:NF014081.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HWM60537.1"
                     /translation="ALKSGKRRVAVHSEDDDRMIARKHLAERGKPETHPVWRDAEAAR
                     MSTERVLRLAREAGRRLHVLHITTGDEIPLLAAAKDLATAETTPQHLTLSAPECYERL
                     GTYAQMNPPVRDESHRQALWQAVREGVIDVIGSDHAPHTREEKDKVYPDTPSGMPGVQ
                     TLATILLDHVNKGNMTLERFVDLTASGPQRIFGIAGKGRIACGYDADFTIVDMSLTRA
                     IENKWIASTCGWTPFDGMKTKGWPVATVLRGAFVMRDFAATDSAQGRPIRFVETLEAA
                     "
     gene            829..1473
                     /locus_tag="VNN98_00225"
     CDS             829..1473
                     /locus_tag="VNN98_00225"
                     /inference="COORDINATES: protein motif:HMM:NF013933.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0006865 - amino acid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysE family transporter"
                     /protein_id="HWM60538.1"
                     /translation="MTYFYLILSGVVMGLAAAVPIGPVNLICIRRTFAFGPVNGFMSG
                     VGAALGDGVFAAIMGFGLTWMAHLIEGYAPIIELIGGAMLVWFGWRTFTAPPMVRGLE
                     ERDKVGASNLIRAMVSTFALTVTNPATLLAFTAMFAGLGGLAGGAGSYVDAGFVVAGV
                     VGGSTGWWLALTTVIGLFHTRIDEAAMKRINRGSGLLVAIFGLVVLVHLAVKFA"
     gene            1612..2151
                     /locus_tag="VNN98_00230"
     CDS             1612..2151
                     /locus_tag="VNN98_00230"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: protein motif:HMM:NF012478.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FKBP-type peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HWM60539.1"
                     /translation="MKRLAAVFALMLAVWAVPALMAKAWAVDDALSIEANQKYLENNK
                     KVKGVIVRPSGLQFRILQNGYGKRPTSTDTVKVYYTGTLINHVVFDGTSPGLPASMKL
                     NSVIPGWIEALQLMREGDRWLLTIPPNLGYGVRGSPGGEIPPNQVLVFDLKLLETTAA
                     AHKGEKGYVPDPGDKDDQQ"
     gene            2153..4810
                     /locus_tag="VNN98_00235"
     CDS             2153..4810
                     /locus_tag="VNN98_00235"
                     /inference="COORDINATES: protein motif:HMM:NF025025.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HWM60540.1"
                     /translation="MLRGFFSRPLKSLWTARHLGGGKLRITIALAMVVGASALFWTSR
                     DYSVSAPEWDGQVRGIAYSPSRLFSANDQKQVTPEHIARDLEQLSHLTSHIRTYTVDG
                     GMDKVPEIARRYGMTVSMGIWISPDLDKNEQQIELGIKTALANRRTIDRVIVGNETQL
                     FGYVSPDQLNAYILRVRAALPARIKLTTAEPWSTWMLTPEAGKYVDVIFVHLLPYWEN
                     VDIRGSLKSSEGFYNHVQAEFPDKQIVVGEAGWPSEGRTRGRAEASNANEGWFIRGFV
                     QFAQEKGWDYYLFEAYDEPWKDANEGVAGRYWGLFDASGHPKFPFTGLIRNFPEWRGY
                     ALMAAVLSLLLGLLVLGRMPRVRQTGYLVMGGMIVLVSTGLLALIDATALEYVDPTDI
                     VAMIAISPLVLLACAVILTEGIEMAASLWRMERRVVKLGIPEISPRISIHLPAYNEPP
                     QMVIETLNALARLDYDNYEVIVLDNNTPDPETWRPVEAHCRLLGPRFRFFHFEGLKGF
                     KGGALNRALALTDPDATYVAVIDSDYQVQPFWLRRVIPYFASPGVALVQGPQDYRDAG
                     QSRFKSMAYEEYRGFFHIGMVERNEHNAIIQHGTMTIVRKDALEEVDGWSEWCITEDT
                     ELGLKLFEAGYDAAYVPQSMGSGLMPDTLEAFMTQRYRWVYGAMQMLKRHARAIVVGG
                     SALSWSQRYQFLSGWLPWISDGLGMVVTLMAIVWTVLMWVMPSTIDVPMPALSAAAMA
                     LFATKLLKTLLLYPPKVRSGFKGAFFASVAGLSLTHTVGKAVWTGLLTSSKPFLRTPK
                     CADPASFTQVLRVVWQEAVLLTLLTLAMISMGFDRGFQDPAVSLWMVMLGVQSLPYLA
                     TMVTARISAGSNRTPGALRADAPKLSAAA"
BASE COUNT          841 a         1502 c         1580 g          913 t
ORIGIN      
        1 cgcgctcaag agcggcaagc gcagggtcgc ggtccattcc gaagacgacg accgcatgat
       61 cgcgcgcaag catcttgccg agcgcggcaa acctgagacc catccggtgt ggcgcgacgc
      121 cgaagccgcg cgcatgtcca ccgagcgggt gctgcggctg gcgcgcgagg cgggccgccg
      181 cctgcatgtg ctgcatatca ccaccggcga tgagattccg ttgctggcgg cggccaagga
      241 cctggccacg gcggagacca cgccgcagca tctcactctg tcggcgccgg aatgttacga
      301 gcggctgggc acctatgccc agatgaaccc gccggtccgc gacgaaagcc atcgccaggc
      361 gctgtggcaa gcggtgcgcg aaggggtgat cgacgtgatc ggctccgacc atgcgcccca
      421 cacgcgcgag gaaaaggaca aggtctatcc cgacacaccg tccggtatgc ccggggtcca
      481 gaccctggcc acaatcctgc tggatcatgt caacaaggga aatatgaccc tggagcgttt
      541 cgtcgacctc accgcttcgg gcccgcagcg cattttcggc attgccggca agggccggat
      601 cgcgtgcggc tatgacgccg acttcaccat cgtggatatg agcttgaccc gcgccattga
      661 gaacaaatgg atcgcctcga cttgcggctg gacgccgttc gacggcatga agaccaaggg
      721 ctggccggtc gccaccgtcc tgcgcggggc tttcgtcatg cgcgatttcg ccgccaccga
      781 cagcgcgcaa ggccgcccga tccggttcgt ggagacgctg gaagcggcat gacctatttc
      841 tatcttatct tgtccggcgt ggtgatgggc ctggccgcgg cggtgccgat tggtccggtg
      901 aacctgatct gcatccgccg caccttcgcc ttcggcccgg tcaatggttt catgtccggt
      961 gtgggcgcgg cgctgggcga cggtgtcttc gccgccatca tgggctttgg cctgacctgg
     1021 atggcgcacc tgatcgaagg ctatgccccg atcatcgaat tgatcggcgg cgccatgctg
     1081 gtgtggttcg gctggcgcac ctttaccgcc ccgcccatgg tccgcggcct ggaagagcgc
     1141 gacaaggtcg gcgccagcaa cctgatccgg gcgatggttt cgacctttgc gctgaccgtc
     1201 accaatcccg ccacattgct ggctttcacc gccatgttcg ccggccttgg cgggttggcg
     1261 ggcggggcag gcagctatgt cgatgccggc ttcgtggtgg ccggggtggt gggcggctcg
     1321 accggctggt ggctggccct gaccacggtg atcgggctgt ttcacaccag gatcgacgag
     1381 gcggccatga agcggatcaa ccggggttcg ggcctgctgg tggccatctt cgggctggtg
     1441 gtgctggtgc atttggcggt gaaattcgcc tgaatttttt gtaagccgtg ctttggggcc
     1501 attaagcaag ggggcatatt ttcgccgcga agctggggtt ccatggtttc gggcttgggg
     1561 tcgggaaccg cgacgcgcta ggatatctgt tcggggcgtt cggagagtga aatgaagcga
     1621 ctagcggctg ttttcgcgct gatgctggcc gtatgggcag taccggctct tatggccaag
     1681 gcgtgggcgg tggacgatgc cctcagcatc gaggccaacc agaaatatct cgagaacaac
     1741 aagaaagtga agggcgttat cgtgcgcccc agcggcttgc agtttcgcat cctgcagaac
     1801 ggctatggca agcggccgac ctccaccgac acggtgaagg tctattacac cggcaccctg
     1861 atcaatcatg tggtgttcga cggcacctcg ccggggcttc ccgcatccat gaagctcaac
     1921 agcgtgatcc ccggctggat cgaggcgctg cagctgatgc gtgaaggtga tcgctggctg
     1981 ctgaccattc cgcccaactt ggggtatggc gtgcgcggct cccccggcgg cgagatcccg
     2041 cccaaccagg tgctggtgtt cgatctcaag ctgctggaga ccacggcggc ggcccacaag
     2101 ggcgaaaagg gctatgtccc cgatcccggc gacaaagacg atcagcagta acatgctgcg
     2161 cggcttcttc tcccgccccc tgaagagtct gtggacggcg cgccatcttg gcggcggcaa
     2221 actgcgcatc accatagcgt tggcgatggt ggtgggcgcc agcgccttgt tctggaccag
     2281 ccgcgattac agcgtgtcgg cgccggaatg ggacgggcag gtgcgcggca tcgcctacag
     2341 tcccagccgg ctgttcagcg ccaacgacca gaagcaggtc acgccggaac atatcgcccg
     2401 cgacctggag caactatctc acctgaccag ccatattcgc acctatacgg tcgatggcgg
     2461 catggacaag gtgcccgaga tcgcgcggcg ctacggcatg acggtgtcca tgggcatttg
     2521 gatcagcccg gacctggaca agaacgagca gcaaatcgaa ctgggcatca agacggcgct
     2581 ggccaatcgc cgcaccatcg accgggtgat cgtgggcaac gagacccagc tgttcggtta
     2641 tgtctcaccc gaccagctca acgcctatat cctgcgggtg cgcgcggcgc tgccggcgcg
     2701 catcaaactc accactgccg agccctggtc cacctggatg ctgacgcccg aagccggcaa
     2761 gtatgtcgac gtgattttcg tccatctgct gccctattgg gagaatgtgg acattcgcgg
     2821 cagcctgaaa tccagcgaag gtttctacaa tcacgtccag gcggaatttc ccgacaagca
     2881 gatcgtggtg ggcgaggcgg gctggccatc ggaagggcgc acccgcggcc gcgccgaggc
     2941 ctccaacgcc aatgaaggct ggttcatccg cggctttgtg caattcgccc aggaaaaggg
     3001 ctgggactat tatctgttcg aggcctatga cgagccctgg aaagacgcca atgaaggcgt
     3061 ggccgggcgc tattggggcc tgttcgacgc cagcggccat cccaaatttc ccttcaccgg
     3121 cctgatccgc aacttccccg aatggcgcgg ctacgcgctt atggcggcgg tgctgagcct
     3181 gctcttgggc ctgctggtgt tggggcgcat gccacgcgtg cgccagaccg gctacctggt
     3241 gatgggcggc atgatcgtgc tggtttccac cggcctgctc gcgctgatcg acgctaccgc
     3301 cttggaatat gtcgatccca ccgacatcgt cgccatgatc gccatatcgc ccttggtgct
     3361 gctggcttgc gccgtgatcc tcaccgaagg tatcgagatg gccgccagcc tgtggcgcat
     3421 ggagcggcgg gtggtgaagc tgggaattcc ggaaatcagc ccgcgcattt ccatccacct
     3481 gccggcctat aatgagccgc cgcagatggt gatcgaaacc ctgaacgcgc tggcgcggct
     3541 ggattacgac aattacgaag tcatcgtcct ggacaacaac acgcccgatc cggaaacctg
     3601 gcggccggtg gaagcgcatt gccgtctatt gggaccgcgc ttccgctttt tccatttcga
     3661 gggcctcaaa ggcttcaagg gcggggcgct gaaccgggcg ctggccttga ccgatccgga
     3721 cgcaacttac gtcgcggtga tcgacagtga ctatcaggtc cagcctttct ggctcaggcg
     3781 cgtcattccc tatttcgcct cgccgggggt cgcgctggtg caagggccgc aggattaccg
     3841 cgacgcgggc cagagccgct tcaaatccat ggcctatgag gaatatcggg ggttcttcca
     3901 tatcggcatg gtggagcgca acgagcacaa tgccatcatc cagcacggca ccatgaccat
     3961 tgtgcgcaag gacgcgctgg aggaagtgga cggctggagc gaatggtgca tcaccgagga
     4021 caccgagctg gggctgaagc tgttcgaggc cggctatgac gcagcctatg tgccccagag
     4081 catgggctcg ggcctgatgc ccgacacctt ggaagccttc atgacccagc gctatcgctg
     4141 ggtctatggc gccatgcaga tgctcaagcg tcatgcccgc gcgatcgttg ttggcggctc
     4201 ggcgctcagc tggtcgcagc gctaccagtt cctgtcgggc tggctaccct ggatcagtga
     4261 cgggctaggc atggtggtga ccttgatggc gattgtctgg accgtgctga tgtgggtgat
     4321 gcccagcacc atcgacgtgc cgatgccggc cttgtcggcg gcggccatgg cgctgttcgc
     4381 caccaagctg ctcaagacct tgctgctcta tcccccaaag gtgcgctcgg gtttcaaggg
     4441 cgcctttttc gcctcggtgg cgggcctgtc tttgacccac acggtgggca aggcggtgtg
     4501 gacgggactg ctcacctcca gcaagccctt cctgcgcacc cccaaatgcg ccgatccggc
     4561 cagcttcacc caggtgctgc gggtggtgtg gcaggaggcg gtgctgctga ccctgctgac
     4621 cctggcgatg atctccatgg gcttcgaccg tggcttccag gacccggcgg taagcctgtg
     4681 gatggtgatg ctgggggtac agagccttcc ctatctcgcc accatggtga cggcgcgaat
     4741 ttcggcgggc tccaaccgca ccccaggcgc gctgcgggcg gacgcgccta agctgtcggc
     4801 ggcggcttaa accccaaatg tcatggcccg cgaatg
//
LOCUS       DATMDK010000012         3215 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_6789,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000012 DATMDK010000000
VERSION     DATMDK010000012.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3215)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3215)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3215
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_6789"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..831
                     /locus_tag="VNN98_00240"
     CDS             <1..831
                     /locus_tag="VNN98_00240"
                     /inference="COORDINATES: protein motif:HMM:NF036799.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM60541.1"
                     /translation="DQAKLFGGGDDARQLSNPIASDLDALRPSLLPSLLAAASRNAAR
                     GFANLQLFEIGAAFDSGMPEAQKNVAAAIRTGNPERHWQRGGEGANLFAVKADLLAAL
                     EAITGAPMSAPLTQGAPGWYHPGRSGTIAMGPKVIAQFGELHLKVLAAFDIRVPAAGF
                     EIFLDAIPDAKTKGKAKPLFAPSPFQAIERDFAFVVDAKLAAGEIVKAVKLADRALID
                     TVSVFDVYEGKGVPEGHKSVAVAVRIQPKDATLTEAEIEALAQKIVAAAMKMGASLRS
                     "
     gene            896..2032
                     /locus_tag="VNN98_00245"
     CDS             896..2032
                     /locus_tag="VNN98_00245"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013646.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HWM60542.1"
                     /translation="MVQRFDLAIVGGSFAGLACARSAALRGLKVAVLDAKPEPGARVR
                     TTGIVVKEASDAFDLPAGMMRKVPGVRLYAPDNRSLDLSAPGYFFQATDMPALMRWMA
                     DEAARAGAVLMYGRKFEGGLEYERGVAMGDLHASFLVGADGARSRVAAAFGLGQNRRF
                     LAGLEIECEPLEGVDGRFLHCFADSQIAPGYIAWMVPGVGATQIGLAASRPARPDLGA
                     LLRRLKAFFDIRDIRVTSRRSGLIPSGGVVSDLGSRRVMLVGDAAGMVSPVTGGGIHT
                     ALHFGRRAAVLIANYLNDRGPEPARAMAAEAPRYGAKLWLRRALDLAPPNALINAALM
                     TEPMRRLAQRLYFHSRGESNETFETWSRAFEQQGEPARADLRLI"
     gene            complement(2029..2844)
                     /locus_tag="VNN98_00250"
     CDS             complement(2029..2844)
                     /locus_tag="VNN98_00250"
                     /inference="COORDINATES: protein motif:HMM:NF025059.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent methyltransferase"
                     /protein_id="HWM60543.1"
                     /translation="MKADKVKAEKTAVQDLWPGQSVALLKALHILTHNGGLNADSRRK
                     LKQVQHLAQLIKPAIDAALAEKDQPVLADLGAGKSYLGFILYDLYFAPVGRGRVVAVE
                     ARAALIETAKKIAAESGFARMDFVEGKIAEAALGAVDIVTALHACDTATDEAILFALK
                     HEAKFVALVPCCQAEVARELESAKGPLEQLWRHGIQRREFGAQLTNVQRGLYLEAHGY
                     KVRVTEFTGFEHTQKNEMIFAERHQRSNPRAKSEFEKLVKEIGVAPSLLEFSP"
     gene            complement(2841..>3215)
                     /locus_tag="VNN98_00255"
     CDS             complement(2841..>3215)
                     /locus_tag="VNN98_00255"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM60544.1"
                     /translation="IANSWMFNSGLIGVSPVHVPVLEDTLALIDALIGRARKFPTIEQ
                     LALSEVARLNQIPIAEVADTFLHYWQGRRRIYMANEIEKSLSPEWDDLTPPKQWAQMN
                     YWAVRAYNYWYGVTHMFEGWRR"
BASE COUNT          536 a         1057 c         1013 g          609 t
ORIGIN      
        1 gaccaggcca aattgttcgg tggcggcgat gacgcgcgcc agttgtccaa ccccatcgcc
       61 tcggaccttg acgcgctgcg cccttccctg ctgccgtcgc tactagcggc ggcgtcgcgc
      121 aacgcggcac gcggctttgc caatctgcag ctgttcgaga tcggcgccgc cttcgacagc
      181 ggcatgcccg aagcgcaaaa aaatgtcgcc gccgccatcc gcaccggcaa tcccgaacgc
      241 cattggcaga ggggcggcga aggcgccaac ctgtttgcgg tgaaggccga tctgctggcc
      301 gcgctggaag cgatcaccgg cgccccgatg tccgcgccgc tcacccaagg cgcgcccggc
      361 tggtatcacc cgggccgcag cggcaccatc gccatgggtc ccaaggtgat cgcccagttc
      421 ggcgagctgc atctcaaagt actggcggcg ttcgatatca gggtccctgc cgccggcttt
      481 gaaatcttcc tggacgccat tcccgatgcc aagaccaagg gcaaagccaa gccgctgttc
      541 gcgccctcgc cgttccaggc gatcgagcgc gacttcgcct ttgtggtgga tgccaaactg
      601 gcggcgggcg agatcgtcaa agccgtcaag ctggccgacc gcgccctgat cgacacagtg
      661 agcgtgttcg acgtctatga aggcaagggc gtgccggagg gtcacaagtc ggtggccgtg
      721 gccgtgcgca tccagcccaa ggacgcgacc ctgaccgagg ccgagatcga ggccctggcg
      781 cagaagatcg tcgcggcagc gatgaagatg ggcgccagct tgagaagtta attccgccag
      841 gccacaatcc cgccatcgcg ggacagcatc gtccctattc ctcgcggagg cgtgcatggt
      901 tcagcggttc gatctggcga ttgtcggagg cagtttcgcg ggtttggcct gcgcccgcag
      961 cgccgcgctg cgcggcctga aagtcgccgt gctggacgcc aagcccgagc cgggggcgcg
     1021 ggttcgcacc accggtattg tcgtcaagga agccagcgac gcttttgacc ttcccgcggg
     1081 catgatgcgc aaagtgcccg gtgtgcgtct ctatgcgccg gacaacaggt cgctggacct
     1141 ttccgcaccg ggatatttct ttcaggcgac cgacatgccc gccctgatgc ggtggatggc
     1201 cgatgaggcg gcccgcgccg gtgccgttct gatgtacggc cgcaaattcg agggcgggct
     1261 ggaatatgag cgcggcgttg ccatgggcga tctgcacgcc tcgttcttgg tcggtgctga
     1321 cggggcgcgg tcgcgggtcg ctgcagcatt cggcctggga cagaatcgcc ggtttcttgc
     1381 ggggttggag attgaatgcg aaccgctgga gggtgtggac ggccgctttc tgcactgctt
     1441 cgccgacagc caaatagcgc cggggtatat tgcctggatg gtgcccgggg tcggtgcgac
     1501 tcagatcggg cttgccgcca gtcgtcccgc gcggcctgat cttggcgcac tgctgcggcg
     1561 gctgaaggcg tttttcgata ttcgcgatat ccgagtcaca tcgcgtcgca gcggcctgat
     1621 cccctcgggc ggcgtggtca gtgacctggg ctcacgccgc gtcatgttgg tgggcgacgc
     1681 tgccggcatg gtgtcgccag tgacaggagg cgggattcat accgcgctgc atttcggccg
     1741 ccgcgctgcg gtgctgattg ccaactatct caatgatcgc ggtccggaac ccgcacgcgc
     1801 gatggcggcg gaagcgccgc gctatggggc caagctgtgg ctgcgccgtg cgctcgatct
     1861 cgccccgccc aacgcgctta tcaatgcggc attgatgacg gagcccatgc gccgcctggc
     1921 gcaacgcctc tactttcatt cccgcggcga gagcaacgaa actttcgaga cctggtcgcg
     1981 ggcgtttgaa cagcagggtg aacccgcacg cgccgacctg cgtctgatct aaggcgagaa
     2041 ttccagaagg cttggcgcca ccccgatttc cttcaccagc ttttcgaact cgctcttcgc
     2101 gcgcgggttg gaacgttggt ggcgttcggc gaagatcatt tcgttcttct gggtgtgctc
     2161 aaaaccggtg aactcggtca cccgcacctt gtagccatgc gcttccagat agaggccgcg
     2221 ctgcacattg gtcagttgcg cgccgaattc ccgcctttgg atgccgtgcc gccacagctg
     2281 ctccagcggg cctttcgcgc tttccagttc gcgtgccact tccgcctggc agcagggcac
     2341 cagggccacg aacttggcct catgcttcag ggcaaacagg atggcttcgt cggtggcggt
     2401 gtcgcaggca tgcagcgccg tgacgatgtc caccgcgccc agcgccgcct cggcaatctt
     2461 gccttcgaca aaatccatgc gggcaaagcc gctttcggcc gcgatcttct tggcggtttc
     2521 gatcagcgcg gcgcgcgctt ccaccgccac cacccggccg cgcccgaccg gcgcgaagta
     2581 aagatcgtag agaatgaacc ccagatagga tttgcccgca cctagatcgg ccagcaccgg
     2641 ctgatctttc tcggccagcg ccgcatcaat cgcgggcttt atcagctgcg ccaaatgctg
     2701 cacttgtttc agcttacgcc gggaatccgc gttcagcccg ccattgtggg tgaggatgtg
     2761 cagcgctttc agcagcgcca ccgactggcc cggccacaaa tcctgcacgg cggtcttctc
     2821 ggccttcacc ttatccgctt tcaccggcgc catccctcaa acatgtgcgt gacgccatac
     2881 cagtaattat aggcgcgcac cgcccaatag ttcatctgcg cccactgttt gggcggcgtc
     2941 aggtcgtccc actccggcga cagcgacttt tcgatctcat tggccatata gatgcgccgc
     3001 cgcccctgcc agtaatgcag gaacgtgtcc gcaacctcgg caatgggaat ctggttcagc
     3061 cgcgccactt cgctgagcgc caactgctcg atagtgggga acttgcgcgc ccgcccgatc
     3121 agggcatcga tcagggccag cgtgtcttcc agcaccggca catgcaccgg cgacactccg
     3181 atcaggccgg aattgaacat ccagctattg gcgat
//
LOCUS       DATMDK010000013         4335 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_693251,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000013 DATMDK010000000
VERSION     DATMDK010000013.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 4335)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4335)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4335
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_693251"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            133..474
                     /locus_tag="VNN98_00260"
     CDS             133..474
                     /locus_tag="VNN98_00260"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM60545.1"
                     /translation="MKKLAILTVLAALLPLGGCVVYGLGPSPGGAWANYDGSYEYALG
                     GYDPGGYCPPGMGDPYAYYGGYGSSGGYGSYGAYGGAGYGGYASYGGPGYGVYGGGNG
                     GGYAGVYYRHR"
     gene            570..2072
                     /locus_tag="VNN98_00265"
     CDS             570..2072
                     /locus_tag="VNN98_00265"
                     /inference="COORDINATES: protein motif:HMM:NF013696.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HWM60546.1"
                     /translation="MRIRGPILAGLLSLLAVPATAQPEFAARVRSYAQNHRADIVAEY
                     LKLLSLPNIHGDAPALQRNAALLQDMMKRRGLDTALWQTSGGVPVVFGEKRVAGAART
                     LLFYIHYDGQPVDPKRWSQPDPFVPVIRTASIEAGGKPVTDLSGMSDEWRIYARASGD
                     DKAPIEAILCTLDALGTPKENIKIILHGEEEGSGPGLAEVIAKYPDRLKSDLLVILDG
                     PQHPSGRPTIFYGARGGAGLDVTVYTAKQGMHSGNYGNWMPDANVRLAQLISSMVSPG
                     GKVVIPGFYGDVLPFPAEARAMMDAVPDQSRQMQRDFGVGSLDGAASSLQEGLNLPTF
                     SIHQMKGGEVGGVIPASASAQIAMRLVAGNDPKVMIERVTQFIRAQGYFITDKEPDVV
                     ALASHARIARVVPRLPEGGGSGAWHTDPNNPQALFATETLRAVWGDRLVRIRTLGGGV
                     PASSFIDAYHVPTVGVSLANYDDNQHTDNENIRLGNIFDGMVTLSALMMH"
     gene            complement(2069..2413)
                     /locus_tag="VNN98_00270"
     CDS             complement(2069..2413)
                     /locus_tag="VNN98_00270"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM60547.1"
                     /translation="MKPGCIRMFKFRVLPGMEQAYADYLRDVVAPIDAVAHDAGAFLE
                     LLTVTPDTVDAAWNHGRIFTFRDHAHRGAMPAAMAKAAAAFDGSDEARNKRKAYAETL
                     RRQVVIADYDVG"
     gene            complement(2410..3666)
                     /locus_tag="VNN98_00275"
     CDS             complement(2410..3666)
                     /locus_tag="VNN98_00275"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HWM60548.1"
                     /translation="MKSSVRWQFAWFLFLPITWIMSLDRTAMTVAAPVMQKDLHFTLT
                     QMSWILTAFHWAYAICSIPAGVFTAWAGARVALVIANAAWSALTLAIPFAGTATALTG
                     LRFALGGFQAVDMPASITAFKNWFPTGERARANSALLAGVYLGPIMGAPLTVYLVGAF
                     GWRAAFIAFGGLGIVSAVIWWMLFRDTPGQHPAVSEAERLLIREGQLEAPMRAKASLR
                     EMAGRFAFWTIGLQGLCTGVVMGFFNTWLPTYLMQERGVALKSLGFFSSLPWMILLLV
                     VFIASVLEDAILKRSGSVWLARMPAAILGFCITATCLWLTAHTAATGPALILLAAGLG
                     GMGFVQASTWSTIQEVGGDNTSILAAWNGMLTNGAAALGPMLMAGLVSRQGNWSDALS
                     GVAMVALAGAAIWTLIHRRASRRLAA"
     gene            complement(3714..>4335)
                     /locus_tag="VNN98_00280"
     CDS             complement(3714..>4335)
                     /locus_tag="VNN98_00280"
                     /inference="COORDINATES: protein motif:HMM:NF016777.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HWM60549.1"
                     /translation="DDHTLVLDCLARTAPAQFKGTSMFFPKDDDAPAKLEALVKKEPR
                     ICSTRFHLHRGNTAYFASFAEPGVRALWKKAVDLNLVVELDLGPNYARDAGSAIAAFP
                     GCKVLIDHMCNPKTGMIWEYGDVLDLAKYPGVFMKMSSLGYMADDKPDYESLIPFTRR
                     VIKEFGPDRMAWSGDSPHIADVHMKGYSAVDIAKVKGGNLQRLLNW"
BASE COUNT          819 a         1430 c         1369 g          717 t
ORIGIN      
        1 ctttagccgg ccagggtgac gcggttggca gtcgattgcg cccgcgcctc catttacctt
       61 aataccggcg ccgcctcgcg cccgcggccc ggaggtgtat cattctggca cagattaccg
      121 agccgagggg ccatgaagaa actcgccatc ctgaccgtcc tcgccgcgct gctgccgctg
      181 ggcggttgcg tggtctatgg cctcggcccc agccctggcg gcgcctgggc caattacgac
      241 ggcagctatg agtatgccct tggcggctat gatcctggcg gctattgccc gcccggcatg
      301 ggcgaccctt acgcctacta tggcggttac ggcagctccg gcggatacgg cagctatggc
      361 gcctatggcg gcgcgggata tggcggatat gccagttatg gcggtcccgg ctatggcgtc
      421 tatggcggcg gcaatggcgg cggttacgcc ggggtctatt accgccaccg ctaactcacc
      481 ccgttcagca tccgggcaca ggtgtgccaa tgcgcgcgtt tcaaagagcg cggcgattgg
      541 catgatcgtc tctccattgg gagggtgcga tgcggatccg tggaccaatt cttgcgggcc
      601 ttttgtccct gttggcggtg cccgccacgg ctcagccgga attcgcggcg cgcgtgcgca
      661 gctatgccca gaaccatcgc gccgacattg tggcggagta tctgaaactc ctctccctgc
      721 ccaacatcca tggcgacgcc cccgccctgc aacgcaatgc cgctctgctg caggacatga
      781 tgaagcggcg cgggctggat actgccctgt ggcaaacctc cggcggagtg ccggtggtgt
      841 tcggcgaaaa acgggtcgcc ggtgcggctc gaactctgct gttctatatt cattatgacg
      901 gccagccagt cgaccccaag cgctggagcc agcccgatcc gtttgtgccg gtgatccgca
      961 ccgccagcat tgaggcaggc ggcaaaccag tcaccgacct ttccggcatg tccgatgaat
     1021 ggcgtatcta tgcccgcgcc tccggcgacg acaaggcgcc gatcgaggcc attctgtgca
     1081 ccctggacgc cttgggcaca ccaaaagaga atatcaaaat catcctgcat ggcgaagaag
     1141 agggcagcgg cccgggcctg gccgaagtca tcgccaaata tccggatcgc ttgaaatcgg
     1201 acctgctggt gatcctggac gggccgcaac atccgagcgg ccggcccacc attttctacg
     1261 gcgcgcgcgg cggcgcggga ctggacgtca ccgtctatac cgccaaacag ggcatgcaca
     1321 gcggcaatta cggcaactgg atgccggacg ccaatgtgcg gctggcgcag ctgatttcgt
     1381 ccatggtgtc gcccggcggc aaggttgtga tccccggctt ctatggcgac gtgctgcctt
     1441 tcccggccga agcgcgcgcc atgatggatg cggtgccgga tcagtcgcgc cagatgcaac
     1501 gcgatttcgg cgtcggctcg ctggacggcg cggcatcttc gctgcaggaa gggctgaacc
     1561 tgcccacctt cagcatccac cagatgaagg gcggcgaggt gggcggcgtg atccccgcca
     1621 gcgccagcgc ccagatcgcc atgcggctgg tggcgggcaa cgaccccaag gtgatgatcg
     1681 agcgcgtcac ccaattcatc cgggcgcaag gctatttcat caccgacaag gaacccgatg
     1741 tcgtcgccct ggccagccat gcccgcatcg cgcgggtggt cccgcgcttg cccgaaggcg
     1801 gcggcagtgg cgcctggcat accgatccca ataatccgca ggccctgttc gccaccgaaa
     1861 cgctgcgcgc ggtgtggggc gaccggctgg tgcgaatccg caccctgggc ggcggcgtgc
     1921 ccgcctcatc cttcatagac gcctatcatg tgcccacggt gggggtatcg ctggccaatt
     1981 acgacgacaa ccagcacacc gacaatgaga atataaggct gggcaatatc ttcgacggca
     2041 tggtgacgct ttccgccctg atgatgcatt agccgacatc gtagtcggcg atcacgacct
     2101 ggcggcgcaa ggtctcggca taggctttgc gtttgttgcg cgcttcgtcg ctgccgtcga
     2161 acgccgccgc ggctttggcc atcgcggccg gcatggcgcc ccgatgagca tggtcgcgga
     2221 aagtgaatat ccggccgtga ttccatgcgg cgtccacggt atccggcgtc acggtcagca
     2281 gctccagaaa cgcgcccgcg tcatgcgcca ccgcatcgat cggcgccacc acgtcgcgca
     2341 gatagtcggc ataggcctgt tccatccccg gcaacacccg gaatttgaac atgcggatgc
     2401 agccgggctt catgccgcaa gacgcctgga tgcacggcga tggatcaggg tccagatcgc
     2461 ggcgcccgcc agcgccacca tcgccacccc cgacagcgca tccgaccagt tgccctgacg
     2521 cgataccagg cccgccatca gcatcggtcc cagcgcggcc gcaccgttgg tcagcatgcc
     2581 gttccaggcg gcgaggatac tggtgttatc gccgccgacc tcctggatgg tcgaccaggt
     2641 cgaggcctga acaaagccca tgccgcccag ccccgccgcc agcaaaatca gcgccgggcc
     2701 ggtcgcggcg gtatgggccg tgagccacag gcaggtggcc gtgatgcaaa aacccaggat
     2761 cgcagcgggc atccgcgcca gccacaccga accactgcgc ttgaggatcg cgtcttccag
     2821 caccgaagcg atgaacacca ccagcaggag gatcatccag ggcagcgagg agaaaaagcc
     2881 cagcgatttg agggcgacgc cgcgctcctg catcagatag gtgggcagcc aggtgttgaa
     2941 gaagcccatc accacgccgg tgcacaggcc ctgcaagccg atggtccaga acgcgaaacg
     3001 tcccgccatc tcccgcagcg acgctttggc ccgcatcggc gcttccaact ggccctcgcg
     3061 gatcaacagg cgttcggcct ccgacaccgc cggatgctgc ccgggcgtgt cacgaaacag
     3121 catccaccag atcacggcgc tgacgatgcc cagcccgcca aaggcgatga aggcggcgcg
     3181 ccagccgaag gcgcccacca gatagacggt taagggcgcg cccataatgg gccccagata
     3241 gacaccggcc agcagcgcgg aattggcgcg cgcccgctcg ccggtgggaa accagttctt
     3301 gaaggcggtg atcgaggcgg gcatgtctac cgcctgaaac ccgcccaggg caaagcgcag
     3361 accggtgagc gcggtggcgg tgccggcgaa cgggatcgca agagtcaggg ccgaccaggc
     3421 ggcgttggcg atcaccagcg ccacccgcgc cccggcccag gcagtgaaga cgccggcggg
     3481 aatcgagcag atggcatagg cccagtgaaa ggccgtcaat atccacgaca tctgggtcag
     3541 ggtgaagtgc agatccttct gcatcacagg cgccgccacg gtcatggcgg tacggtccag
     3601 cgacatgatc caagtgatgg gcaggaacag aaaccaggcg aactgccagc gcaccgagga
     3661 cttcatcacc cgctcccgtc tcaaggagac aggctagtcg gagtgccgaa gcgctaccag
     3721 ttcaacaggc gctgcaaatt gccgcccttg accttggcga tatcgacggc cgaatagccc
     3781 ttcatgtgca cgtcggcgat gtggggggaa tcgccgctcc acgccatgcg atcggggccg
     3841 aattccttga tcacgcggcg ggtgaagggg atcaggcttt catagtccgg cttgtcatcg
     3901 gccatatagc ccaggctcga cattttcata aagacgcccg gatacttggc caggtccagc
     3961 acatcgccat attcccagat catgcccgtt ttgggattgc acatatggtc gatcagcacc
     4021 ttgcagcccg gaaaggcggc aatcgcgcta ccggcgtcgc gcgcatagtt gggaccgaga
     4081 tccagctcga ccaccaggtt caggtccacc gccttcttcc acagcgcccg cacgccgggc
     4141 tccgcgaaac tggcaaagta ggcggtgttc ccccggtgca gatgaaagcg ggtggagcag
     4201 atgcgcggct ctttcttcac cagagcctcc agcttggccg gcgcatcgtc atccttgggg
     4261 aagaacatgc tggtgccctt gaactgcgca ggcgcggtgc gcgccagaca atccagcacc
     4321 agtgtatggt cgtcg
//
LOCUS       DATMDK010000014         7216 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2753799,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000014 DATMDK010000000
VERSION     DATMDK010000014.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 7216)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7216)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7216
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2753799"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..514)
                     /locus_tag="VNN98_00285"
     CDS             complement(<1..514)
                     /locus_tag="VNN98_00285"
                     /inference="COORDINATES: protein motif:HMM:NF019335.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor plug domain-containing
                     protein"
                     /protein_id="HWM60550.1"
                     /translation="MGNLRAKSSNIVFRASRVRKYALASTAALCLLGQPAAAQDVAQA
                     DSGVEAVSVTGTRIVRDGYSAPTPVTVVGAEQIQAAAPANLADFVNSSLPSVIGSETS
                     NNSSGSLSNGLAGINALNLRSLGVNRTLILLDGHRTPASAATGDVDINTIPQQLVKRV
                     DVVTGGASADY"
     gene            881..1375
                     /locus_tag="VNN98_00290"
     CDS             881..1375
                     /locus_tag="VNN98_00290"
                     /inference="COORDINATES: protein motif:HMM:NF013224.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC family transcriptional regulator"
                     /protein_id="HWM60551.1"
                     /translation="MANSHSATLDATDYRILRELCSDGRAADVLLGERINLSSTAVAR
                     RRKIMEENGVIAGYNANVNMFSLGFTGVVMVAIELSSQAEHVLVEFEREVVKCPSISY
                     CGFVSGDTDFFIMIHVNSFDDYDRIYRKELSNLPHVAKIRSSFVLREVARRMTPPVVF
                     ETRK"
     gene            1402..2625
                     /locus_tag="VNN98_00295"
     CDS             1402..2625
                     /locus_tag="VNN98_00295"
                     /inference="COORDINATES: protein motif:HMM:NF013799.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ectonucleotide
                     pyrophosphatase/phosphodiesterase"
                     /protein_id="HWM60552.1"
                     /translation="MTARRKILAASLTALLLGSAAAQAGPAHRLMVLSVDGLDWRYLR
                     DRDSLGLKIPNIRKLLARSQVADGVTGVWPTITWPSHTTMLTGVRPDQHGILANASGP
                     PDPALSYWSATKIKVPTLTQCLAATGRTIGAVNWPVTVDAKINWNLPEVYTRRNGDSS
                     DMDTVDKFATPGLVNEIGRATPSFPQQWLDDRSRALAAIFLLKRKHPDLMLLHLAELD
                     SEAHEEGPFVPHANAVVERSDELIGDILKILPKDYDLALVSDHGFERVDRVANLKIMA
                     AADGVTGPMTVQDGLVTTGDPAAATWLRRQAGKGDVGREVLPDELAKYAPQLSGTAFE
                     PAPHVMFGSATAGDAHTASKTKGNHGFWPTRPDYHSVFLLSGPGVKPGKLDTIEMVSL
                     EDRFAGALGVTCPKP"
     gene            complement(2650..5169)
                     /locus_tag="VNN98_00300"
     CDS             complement(2650..5169)
                     /locus_tag="VNN98_00300"
                     /inference="COORDINATES: protein motif:HMM:NF027637.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-dependent metalloprotease"
                     /protein_id="HWM60553.1"
                     /translation="MTVLTRVSHFGVLRAACLAALSVLAISLSGSAALAARSAPDGAA
                     DAPKRGTAGLTRTDGYVPFYFDGARSRVLMEIPVFDQDVLYYVSAATNPGSVEAPFDR
                     GIIFSSVIHFERSGDKVVVNQINLDFRATRGSAKTQEGVADSFPTSVLAVLPVESDAS
                     GKVVVDATPLFMRDAGNISASFKRAKLGDFKFDPTRSVFYPRRMKAFPENTEIETIST
                     FTSDAPGTAINNVTPSDGVFTMRIHHSFLKAPTGYTPRVEDPRIGVSAIRFQDFSKPV
                     DDNPYTQWITRWRLEKKDPNAAMSEPKKPIVYYFDPAIPDPVRHAMKEGLLWWNKAFE
                     AAGYKNAIEAKDAPPDMDPMDIRYAYVLWIQRDERGFSSSGNYHDPRTGEILGSKTHM
                     DTYRMRTIANYYDAYSGGLPDDGTGLTVADPSLTSEDKMDKMPKGQRDMVYLRQALLT
                     AHELGHTLGFPHNWAANMNNRSSVMEYPTPRVKVTDGKLDLSESFMTSIGAYDVYTVR
                     YAYTEFPRAQEKAGLDGVVKDMRDHGVIYTRDADPRYTWYDDRETPTANLRETAEVRK
                     IALANYGPKMLKPGEPIGALRDIRLWIVYLEQRYAIESAVKYIGGMFQNLTTKDEAHP
                     LPPTEFIPASEQREVMGLLMDAVEPKNLEIPESLLIQLTPDPGRNLEDLSKDEVFDQL
                     RAARILSAMVIVPLFDPDRAARMVALGARKPDTLSFPEMVDTVMAHTWKASSGGSAQQ
                     RALLRVTQDVTMQSMMALGGAKDTAPEARDYVLDQLALLADDLKARKDSDPLTDAFYR
                     QSARQITHYLTNPEANAPKAIEPVWGKGPRSRFPLPPGPPL"
     gene            complement(5403..5642)
                     /locus_tag="VNN98_00305"
     CDS             complement(5403..5642)
                     /locus_tag="VNN98_00305"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM60554.1"
                     /translation="MAADIEYRLVWSEINAHWEIHRNGAKTSACRRKKQSAIDMAILA
                     IQAEEKSPDAKVIVTSLKDRTLKTEWAGPSNGSGA"
     gene            complement(5753..6625)
                     /locus_tag="VNN98_00310"
     CDS             complement(5753..6625)
                     /locus_tag="VNN98_00310"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF016041.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_process: GO:0006629 - lipid metabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sterol desaturase family protein"
                     /protein_id="HWM60555.1"
                     /translation="MAVPAGPVKGRETFCSNNCRMLDLFDVKALLIVALIFIPLEMIL
                     PLRGGQKLLRKHWLNDVIYFFLNGLVVKIGLAALVVLAVGAIRVLVPHAVTVAVQSQA
                     VWLQAVEVLLVADTGFYFAHRTFHKIPFLWKFHSVHHSIEEMDWLAAHRVHPLDQILT
                     KAASYLPVFALGFSSTAILIFALIYKWQSLVIHSNSRIGLGPLQWLFASPHFHHWHHA
                     NEPAALDKNFAGQLPLLDLIGGTFFLPGHMPAQYGTHDPVPALYPDQMAYPFRTMIAQ
                     RLPALAAPSGDVPA"
     gene            complement(6640..6714)
                     /locus_tag="VNN98_00315"
     tRNA            complement(6640..6714)
                     /locus_tag="VNN98_00315"
                     /product="tRNA-Glu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(6679..6681),aa:Glu,seq:ctc)
     gene            6852..7148
                     /locus_tag="VNN98_00320"
     CDS             6852..7148
                     /locus_tag="VNN98_00320"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM60556.1"
                     /translation="MPRYYLHVREGSTLTRDLEGQELPDAEAARREAIAALREILGEK
                     LLHGGALSGRSIEIADGAEHGHVVDARSVLFQDGEFRTYPDDVTQSAPKNSPSK"
BASE COUNT         1407 a         2177 c         2231 g         1401 t
ORIGIN      
        1 cgtaatcggc cgaagcgccg ccggtcacca cgtccacgcg tttcaccaac tgctggggaa
       61 tggtgttgat gtccacgtcg ccggtggcgg cggaagcggg tgtgcgatgc ccgtccagca
      121 ggatcagggt gcggttgacg cccagcgaac gcaggttgag ggcgttgatg ccggccaggc
      181 cgttcgacag gctgccggac gagttgttcg aggtttcgct gccgatcacc gagggcagac
      241 tggaattgac gaagtcggca agattggcgg gcgccgccgc ctggatctgc tccgccccca
      301 ccaccgtcac gggggtggga gcgctgtagc cgtcgcggac gatgcgggtg ccagtgaccg
      361 aaaccgcctc cacaccgcta tccgcctgcg ccacatcctg cgccgcggcc ggttgcccta
      421 acagacagag cgcggcggta ctcgccaggg catactttcg aacgcggctg gcgcgaaaga
      481 cgatattgga acttttggcc cgaagattac ccattgaatt ccccatctca aaaagaactg
      541 caccaccggc agcgcttccc ccctgggaga tttttgtttt tgggatagaa aattttacgc
      601 gggctactga ctattttgta gtcaatacgc acgaattagt ggcgaaaccc cttctcaatc
      661 tgcctgcact gacgtttcgt cgcacagaac cacagcgcaa cttcgcgcat ccccacccgc
      721 cgtaaaacat cgggttttat tgctgttttg aagctctggc ggcgaccgcc gtgtcatcaa
      781 tcaacggcat gaccgtaaca gaaacgtcat tgcggttctc agtaatttcg ggcagcgttt
      841 cctccgtaag gtttgctttc catcggtatc ggaggttttt ttggcgaatt cccactctgc
      901 aacactcgac gcgacagatt atcgaattct gcgcgagctc tgcagcgatg gccgcgccgc
      961 cgacgtcctg ctgggcgaac gcatcaacct ttccagcacc gcggtggcgc ggcggcgcaa
     1021 gatcatggag gaaaacggcg tcattgcggg ctataacgcc aacgtcaaca tgttttcact
     1081 gggttttacc ggtgtggtga tggtggcgat cgagctgagc tctcaagccg agcatgtgct
     1141 ggtggagttc gagcgggagg tcgtcaaatg cccctccatt tcctattgcg gcttcgtatc
     1201 gggcgatacc gacttcttca tcatgatcca tgttaattct ttcgacgatt acgaccgcat
     1261 ctatcgcaag gaattgtcca acctcccgca tgttgccaaa attcgcagca gctttgtgct
     1321 cagggaagtg gcacggcgca tgacgccgcc ggtggtgttc gagacccgca agtagccagc
     1381 gagaccgatc ggggagttgg catgacggcg cggcgcaaga tattggcagc ctcactgacg
     1441 gcattgctcc tgggcagtgc ggcggcgcag gccgggccgg cccacaggct gatggtcttg
     1501 tcggtggatg ggttggattg gcgttatctg cgcgaccggg attccctggg attgaagata
     1561 ccgaatatcc gcaagctgct ggccaggtcc caggtcgccg atggcgtgac cggcgtgtgg
     1621 ccgaccatca cctggccgtc gcacaccacc atgctgacgg gcgtgcgccc agaccagcat
     1681 ggcattctgg ccaatgccag cggcccgccg gatccggcgc tcagttactg gtccgccacc
     1741 aaaatcaagg tgccgaccct gacgcaatgt ctcgccgcga cggggcgcac catcggcgcg
     1801 gtcaactggc cggtgacggt ggacgccaag atcaactgga accttccgga agtttatacc
     1861 cgccgcaacg gcgactcctc ggacatggac acggtggaca agttcgccac ccccgggctg
     1921 gtgaacgaga tcggccgcgc cacgccgtct ttcccgcagc aatggctgga tgaccgctcc
     1981 cgcgccctgg cggcgatttt cctgctgaag cgcaaacatc ccgacctgat gttgctgcat
     2041 ctggcggagc tggattcgga ggcgcatgag gaaggcccct tcgttccgca tgccaatgcg
     2101 gtggtcgaac gttcggacga actgatcggc gatatcctga aaatcctgcc caaggactat
     2161 gacctggcgc tggtgtccga ccacggcttc gagcgggtgg accgcgtcgc caatctgaaa
     2221 atcatggccg ccgccgatgg cgtgaccggc cccatgactg tgcaggacgg gctggtcacc
     2281 accggcgatc cggcggccgc gacctggctg cgccgtcagg cgggcaaggg cgatgtgggc
     2341 cgcgaggtgc tgccggatga actggcaaaa tatgcgccgc aattgtccgg taccgccttc
     2401 gagccggcgc cccatgtgat gttcggttcc gccaccgccg gcgacgctca caccgcatcc
     2461 aagaccaagg gcaatcacgg cttctggccc acccgccccg actatcacag cgtcttcttg
     2521 ctgtcggggc cgggcgtgaa acccggcaag ctggacacca tcgagatggt gtcgctggaa
     2581 gaccggttcg ccggcgcctt gggcgtcacc tgccccaaac cgtagccatc gttacagcgg
     2641 cggcctcttt tacaagggag gaccgggcgg cagcgggaag cgggagcgcg gacccttgcc
     2701 ccagaccggt tcaatcgcct tgggcgcatt ggcttcgggg ttggtcaggt aatgtgtgat
     2761 ctggcgtgcc gactggcgat agaaggcatc ggtcaaggga tcgctgtctt tgcgcgcttt
     2821 aaggtcgtcg gccagcagcg ccaactggtc cagcacatag tccctggcct caggcgcggt
     2881 gtccttggcg ccgcccagcg ccatcatgga ctgcatggtg acatcctggg tcacccgcag
     2941 cagcgcccgt tgctgtgcac tgccgccgga cgaagccttc caggtatgcg ccatcaccgt
     3001 gtccaccatt tccggaaagc tcagcgtatc gggcttgcgg gcgcccagcg ccaccatgcg
     3061 tgcggcgcgg tcaggatcga acagcggcac gatcaccatg gccgacagga tgcgcgcggc
     3121 gcgcagctga tcgaacactt catccttgga caggtcttcc agattgcggc cgggatcggg
     3181 ggtcaactgg atcagcaggg attcggggat ctccagattc tttggctcca ccgcgtccat
     3241 cagcaacccc atcacctcgc gctgttcgct ggccgggatg aactcggttg gcggcaatgg
     3301 gtgcgcctca tccttggtgg tcaggttctg aaacatgccg ccgatatatt tcacggcgga
     3361 ttcgatggcg tagcgctgct ccagatagac gatccatagc cggatatcgc gcaaggcgcc
     3421 gatcggctcg cccggcttga gcatcttcgg gccgtaattc gccaacgcga tcttgcgcac
     3481 ttccgccgtc tcgcgcaggt tcgcggtcgg cgtttcccgg tcgtcatacc aggtgtaacg
     3541 cgggtcggca tcacgggtgt agatcacgcc atggtcgcgc atgtccttga ccacgccgtc
     3601 cagcccggcc ttctcctggg cgcggggaaa ttcggtatag gcatagcgca ccgtatagac
     3661 gtcataggcg ccgatcgatg tcatgaagga ttcgctgagg tcgagcttgc cgtccgtcac
     3721 cttcacccgc ggcgtgggat attccatcac cgaggagcgg ttgttcatat tggcggccca
     3781 gttgtgcggg aagcccaagg tatggcccag ctcatgcgcg gtcagcagcg cttggcgcag
     3841 atagaccatg tcgcgctgcc ccttgggcat tttgtccatc ttgtcttcgc tggtcaggct
     3901 gggatcggcc acggtcaggc ccgtaccatc gtccggcaac ccgccgctat aggcatcgta
     3961 ataattggcg atggtgcgca tgcggtaggt gtccatatgc gtcttggacc ccaggatttc
     4021 gccggtgcgc ggatcgtgat agttgccgct ggaagaaaag ccgcgctcat cgcgctggat
     4081 ccacagcaca taggcatagc ggatatccat cggatccatg tccggcgggg cgtccttggc
     4141 ctcgatagcg ttcttgtagc cggccgcctc aaaggccttg ttccaccaca gcaggccttc
     4201 cttcatggca tggcggacag gatcgggaat ggccgggtcg aaataataga cgatgggctt
     4261 tttgggctcg ctcatcgccg cattggggtc ctttttctcc agacgccagc gcgtgatcca
     4321 ttgggtatag ggattgtcat cgacaggctt ggaaaagtcc tggaagcgga tggcgctgac
     4381 accgatgcgc gggtcctcta cccgcggcgt atagccggtc ggcgccttca aaaaggaatg
     4441 gtggatgcgc atggtgaaga cgccatcgct gggtgtgaca ttgttgatag ccgtgcccgg
     4501 cgcgtcggag gtgaaggtcg agatggtctc gatctcggta ttctccggga aggccttcat
     4561 gcgcctggga tagaagacgc tgcgggtggg atcgaacttg aagtctccca gcttggcgcg
     4621 cttgaaggag gcgctgatgt tgcccgcgtc gcgcatgaac aaaggcgtcg catccaccac
     4681 caccttaccg ctggcatcgg attcgaccgg cagcacggcc agaacggagg tcgggaagga
     4741 atccgccacg ccctcctggg tcttggcgct gccacgggtg gcgcggaaat ccaggttgat
     4801 ctggttgacc accaccttgt cgcccgagcg ctcgaaatgg atcaccgagc tgaagataat
     4861 gccgcggtcg aacggcgctt ccaccgagcc gggattggtg gcggcggaca cataataaag
     4921 aacgtcctgg tcgaagaccg gaatctccat cagcacccgg ctgcgggcgc cgtcgaagta
     4981 aaacggcaca tagccgtccg tgcgggtcag gccggcagtg ccgcgcttgg gagcatccgc
     5041 cgccccgtca ggcgcactgc gggcggccag cgccgcggag ccggataggg aaatcgccaa
     5101 gacagacagg gcagccaggc aggcagcccg caggacgcca aaatgcgaga ctcttgtcaa
     5161 aactgtcatc ggcccaaccc cattggaagc gttgaaacgg tagcggaaag cccatggcgg
     5221 ttcttatcaa tatccgctgg cttttggcgc aaagggtttg gatatgtgcg cgatcgcggc
     5281 cggttccgct gaatcttgca cgctggcggc tttggttttt taaaagcgct gcggcgaacc
     5341 tgtatgttgt cgctggacgg gcgcccgtct tcttacattt tgcgacaatt ccgccagccg
     5401 gcttaagcgc cactcccatt cgacgggccc gcccattcgg ttttgagcgt tctgtccttc
     5461 aaagatgtga caataacctt cgcgtcaggc gatttttcct ccgcctggat cgcgagaatc
     5521 gccatatcga tcgccgattg ttttttccgc cggcaggcac tggttttggc gccgttccga
     5581 tgaatttccc aatgcgcgtt tatttcgctc cagacaaggc gatattcaat gtccgccgcc
     5641 acacgcgaag ccggcgcctt caaggtaatt atttttcgcg gtttgcttag cattgcaaca
     5701 gattatgaat tggcgagcca tctgtcacca gtcacgatgt cccaggcgtc gatcaggccg
     5761 gaacgtctcc agaaggtgcc gccaaggcgg gcaatcgctg ggcgatcatg gtgcgaaacg
     5821 gatacgccat ctggtcggga tagagcgccg ggacgggatc atgggtgcca tattgcgccg
     5881 gcatatgccc cggcaggaaa aacgtgcccc cgatgaggtc aagcaaaggc aattgaccgg
     5941 caaagttctt gtccaaagcc gcgggttcgt tggcgtggtg ccagtggtgg aagtgcggcg
     6001 aagcaaaaag ccattgcaat gggccaagac cgatccggct gttggaatga atgaccaggg
     6061 actgccactt gtaaatcagc gcaaagatca aaattgcggt gctggaaaat cccagcgcga
     6121 aaacgggaag ataagaggcc gctttcgtca ggatctgatc caggggatgg acccggtgcg
     6181 ccgccagcca atccatctct tcgatgctgt gatgcaccga gtggaatttc cagagaaagg
     6241 gaatcttgtg aaaggtccga tgcgcgaaat agaaacccgt gtcggcgacc agcagaactt
     6301 ctacggcttg caaccagact gcctgcgact gaacggcgac cgtcacggca tgcggaacca
     6361 gcacgcggat cgcgccaacg gccaggacta ccaaagccgc gaggccgatc ttgacgacca
     6421 gcccgttgag gaaaaaatat atgacatcgt tcagccagtg cttgcgcagc agcttctgtc
     6481 cgccgcgaag cggcagaatc atttccagag gaatgaagat caaggcgacg atcaaaagcg
     6541 ccttgacgtc aaacagatcg agcatccggc aattattgga gcagaaggtt tcacggccct
     6601 taaccgggcc ggccggaacc gccatttctg ttcggaaaat ggtgccccca aggggaattg
     6661 aacccctgtt tcagccttga gagggccgcg tcctaaccgc tagacgatgg ggaccagcgg
     6721 acccggctta tagcgggggc cgggcggacg ccgcaagttc cccctgcttc accctttcgc
     6781 ggcgatccgg accggaacgg cgcgccggtt tgggtgttag caatgtggaa tagcgcagca
     6841 ataccaacgc catgccccgt tactacctcc acgtccgcga aggcagtacc ctcacccggg
     6901 atttggaagg ccaagagctg cccgatgccg aggcggcgcg gcgcgaagcc atcgccgcct
     6961 tgcgcgaaat cctgggcgag aagctgctgc acggcggcgc tctcagcggc cgcagcatcg
     7021 agatcgccga cggcgccgag cacggccatg tggtggatgc ccgcagcgtg ctgttccagg
     7081 acggcgagtt tcgcacctac cccgacgacg tcacccagtc ggcgccaaaa aattccccat
     7141 ccaaatagac gaaggcgcgc aagtccgcat cgcccgcgat cagccaaagg aaattctcct
     7201 ctcccgcgcc cgcttg
//
LOCUS       DATMDK010000015         3790 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_923296,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000015 DATMDK010000000
VERSION     DATMDK010000015.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3790)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3790)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3790
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_923296"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..349
                     /locus_tag="VNN98_00325"
     CDS             <1..349
                     /locus_tag="VNN98_00325"
                     /inference="COORDINATES: protein motif:HMM:NF044742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM60557.1"
                     /translation="PRPHDTGLVTLVSQLQSEFALHARAILGLPVSTEMASPGASAVI
                     YGEVEAGALTFEGVDEALKVPGSELRLFGKPESFVKRRMGVALARAATTDEARSRAKR
                     AAGMVKPLIYPSR"
     gene            457..1653
                     /locus_tag="VNN98_00330"
     CDS             457..1653
                     /locus_tag="VNN98_00330"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HWM60558.1"
                     /translation="MTSSAQDMTADMLATRTPALSERTTCGEVFDWFIAHPAVPAAAI
                     LHSQTGAVLGLINRFIFFASYAKQYVPELFSRKSILKLANLAPLVVDADVRLADLGAT
                     LLVENPDALIECFVVTRRGRYLGVGTGEALLTGKMRLLQAREEQLSHALKAETRANAA
                     KSDLLALMSHELRTPLNAIIGFSEVLGTEMLGPIGHPRYREYANDVHGAGRHLLALIN
                     DILDLSKAAAGKFELDCEEIAPADIVAECLRLTRGKAHEGGLRLTSELAPGLPNLVVD
                     RLRFKQALLNLCSNAIKFTPPGGTVHVSADVADDGGFVLAVRDSGIGMTPEQIPVALE
                     PFRQVASPFARNAEGTGLGLALVKSLIECHDGRLEIESALHRGTTVRLILPPERTVQR
                     RTALSA"
     gene            1755..2966
                     /locus_tag="VNN98_00335"
     CDS             1755..2966
                     /locus_tag="VNN98_00335"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM60559.1"
                     /translation="MSQRRLHLIFVGLTCLWFSGSQASADQLPTACALLSKAMNADGP
                     VFLPSYPTVASGPLQGAAFLYDNAVATIALVACGEPDKAARIGEAMLAALNQDRYWHD
                     GRLRNGYLAGPVGAGPVKLAGWWDDKQNMWVEDRYQVGSDSGNMAWAILALLALDQST
                     SDHRYRDGAARIGGWVTQWRSKSGPGGFSGGTFAHEPVPVAETWKSTEHNTDLTAAFT
                     GLSQATGDRNWLEQARAAQEFVGALWTSACGCFAVGTGEDGITHNPYLALDAQVWPLL
                     TIPGAATRYGAAVLATVENRLRDGDGYAYSEAKEGLWTEGTAQVALFMELSGRKAEAQ
                     RLFQAIDAMRTADGSYYASSTKALPTGFMLETDPTQPRQYFHIPHLAALSWAAIASRR
                     YNPFTRKSSLP"
     gene            complement(3000..>3790)
                     /locus_tag="VNN98_00340"
     CDS             complement(3000..>3790)
                     /locus_tag="VNN98_00340"
                     /inference="COORDINATES: protein motif:HMM:NF021350.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="AAA-associated domain-containing protein"
                     /protein_id="HWM60560.1"
                     /translation="DVLTAENLRTDLVELWGNGKLPIKGIILVTHNIEEAVLMCDRVL
                     LFSSNPGRVASEINIDLPQPRDRTSPQFEDYVDQIYVEMTARRVERMRQAQTQGNAIE
                     MPLHHVSPNQISGLIEALAAAPYNGKADLPDIAYEQELEVDELFPVAEAMQLLRLAEV
                     EGGDIKLTHMGKRFADGELNERKEIFSRALMSNVPLAAHIRKILDERASHSAPKTRFL
                     DELEDHMAEDAAEETLKTVVSWARFGELFSYDDDAASFSLENPT"
BASE COUNT          714 a         1137 c         1183 g          756 t
ORIGIN      
        1 gccaaggccg cacgataccg gcctggtgac cctggtgtcg cagctgcaat cggaattcgc
       61 cttgcatgcc cgtgccatcc tgggcctgcc ggtatccacc gagatggcct ctcccggcgc
      121 ctctgcggtg atctatggtg aggttgaagc cggcgcgctc accttcgaag gcgtggacga
      181 ggcgctgaaa gtccccggca gcgaattgcg cctgttcggc aagccggaat ccttcgtcaa
      241 acgtcgtatg ggcgtggcgc tggcccgcgc tgcaaccaca gatgaagcgc gcagccgcgc
      301 caagcgtgcg gcgggcatgg tgaaacctct tatttacccg tcacggtaac ttcacaaaac
      361 ttgcctgttt ggcaagcagc aggttaaccg tccgcacacc ccgtatccct agtttgccag
      421 tacgagcaca cgatatgagt gcatggggca tttggcatga catcttcggc gcaggatatg
      481 acggcggaca tgctggcgac gcgcacaccg gcgttgagcg agcggaccac ctgcggcgag
      541 gtattcgact ggtttatcgc ccatcccgcg gtgccggccg ccgccatcct gcacagccag
      601 acgggcgcgg tgctggggtt gatcaaccgc ttcatcttct ttgccagcta tgccaagcaa
      661 tatgtccccg aactgttcag ccgcaaatcc atcctcaaac tggccaacct ggcgccgctg
      721 gtggtggatg cggacgtgcg gctggccgat ttgggcgcca ccctgctggt ggaaaacccc
      781 gacgccttga tcgaatgttt tgtggtgaca cggcgcggac gctatctggg cgtaggtacc
      841 ggcgaggcgc tgctgaccgg caagatgcgg ctgctgcagg cccgcgaaga acaattgtcc
      901 catgccctga aggcggaaac ccgcgccaac gccgccaaga gcgatcttct ggccttgatg
      961 agtcacgaat tgcgcacgcc gttgaacgcc attatcggtt tttcggaagt gctgggtacc
     1021 gagatgctgg gaccgatcgg ccatccgcgt taccgcgaat atgccaatga cgtgcatggc
     1081 gcgggccggc atctgctggc cttgatcaac gacattctcg atctgtccaa ggcggcggcg
     1141 ggcaagttcg agttggattg cgaggagatc gcgcctgccg acatcgtcgc cgaatgcctg
     1201 cggctgaccc gcggcaaagc gcatgaaggg ggcttgcgcc tgacctcgga gctggcgccg
     1261 ggcctgccca acctggtggt ggaccggctg cgctttaaac aggcgctgct caatctttgt
     1321 tccaatgcca tcaagttcac cccgcccggc ggcacagtgc atgtcagcgc cgatgtggcg
     1381 gacgacgggg gctttgtatt ggcggtgcgc gatagcggca tcggcatgac gccggaacag
     1441 attccggtgg cgctggagcc attccgccag gttgcctcgc cctttgcccg caatgccgaa
     1501 ggcaccggct tgggcctggc cctggtcaaa tcgctgatcg agtgtcacga cggaagactg
     1561 gaaatcgaaa gcgcgctgca ccggggcacc acggtgcggc tgatcctgcc gccggaacgg
     1621 acggtgcaac gcaggacggc gctttcggcc tgaagcacgc aaagccaccg cggcggcggt
     1681 caagccaaga ccagcgtaag ctactgttcc tgttctcgct gtcgaggtgg acaattgtat
     1741 gagatattgc gcgcatgtcg cagcgccgct tacatctgat ttttgtgggt ttgacctgcc
     1801 tctggttctc gggatcgcag gcgtccgcag atcagttgcc gacagcgtgt gcgttacttt
     1861 ccaaagcgat gaacgccgac ggccctgtat ttcttcccag ctatccaact gtcgcgtcag
     1921 gtccgttaca aggcgcggcg ttcctttacg acaatgcggt tgcgacgatt gcactggttg
     1981 cctgcgggga acccgacaaa gccgcgcgga tcggcgaagc catgctggcg gcgttgaatc
     2041 aggaccgtta ctggcatgac ggacgcttgc gcaacggtta tctggcgggc cctgtcggtg
     2101 ccggtcccgt gaagcttgcc ggttggtggg acgataagca aaatatgtgg gtggaggatc
     2161 gctaccaggt cggcagcgat agtggaaaca tggcgtgggc gatccttgcg cttctggccc
     2221 tggatcaatc gaccagcgac catcgctatc gtgacggcgc cgcgcggatc ggcggttggg
     2281 tcacacaatg gcgcagcaaa agtgggcccg gcggcttttc gggtgggaca ttcgcgcatg
     2341 aacctgtccc tgtagcggaa acctggaaat cgaccgagca caacacggat ctgacggcag
     2401 cattcacggg tctctcgcaa gcgaccggcg acaggaattg gcttgagcaa gcccgcgctg
     2461 cacaagagtt tgtcggtgcc ctgtggacct cggcatgcgg ttgttttgcg gtgggcaccg
     2521 gggaggacgg catcacccac aatccctatc tggcgcttga cgcgcaggta tggcctttgc
     2581 tgacgattcc cggagcagcc acgcgctatg gggcggctgt cttggcgaca gtggaaaatc
     2641 gactgcggga cggagacggt tacgcttaca gcgaagccaa ggagggcctg tggaccgaag
     2701 gcaccgctca agtcgcgctt tttatggaat tgtcgggacg aaaagcggaa gcgcagaggt
     2761 tgtttcaggc catcgacgcc atgcgaacag ctgatggctc ctattatgca tcaagcacga
     2821 aggcgttgcc gacgggcttc atgttggaaa cagatcccac ccagccgcgc caatattttc
     2881 atatccctca tctggcggcg ctttcctggg ccgcaatcgc cagccgccgc tacaatccgt
     2941 ttacgaggaa aagcagcctg ccctagtcgc tattagccaa gccggctgtg acagtaaagc
     3001 taagtcggat tttcgaggct gaacgacgct gcgtcgtcgt cgtaagagaa taactcaccg
     3061 aaacgcgccc agctcaccac cgtcttcaag gtctcttccg ccgcgtcctc ggccatatgg
     3121 tcttccagtt cgtccaggaa tcgggtcttg ggcgccgaat ggctggcgcg ttcgtccagg
     3181 attttgcgga tatgggcggc caacggcaca ttgctcatca gggcgcgcga gaaaatctcc
     3241 ttgcgctcat tcaattcgcc atcagcgaaa cgcttgccca tatgggtgag cttgatgtcg
     3301 ccgccttcca cttccgccag gcgcagcagc tgcatggctt cggccaccgg gaagagttcg
     3361 tccacttcca gttcctgctc ataagcgatg tcgggcagat cggccttgcc gttatagggc
     3421 gctgccgcca gcgcctcgat aaggccggaa atctggttgg gcgagacgtg atgcagcggc
     3481 atttcgatgg cgttgccctg ggtctgggcc tggcgcatgc gctccacccg ccgcgcggtc
     3541 atttcgacat agatctggtc gacataatcc tcgaattgcg gcgaggtgcg atcgcgcggc
     3601 tgcggcagat cgatattgat ctccgacgcc acccgccccg gattggagga gaacagcagc
     3661 acccggtcgc acatcaagac cgcttcttcg atattgtggg tgaccaggat aatgcccttg
     3721 atcggcagct tgccgttgcc ccacagttcc accaagtcag tgcgcagatt ttccgccgtc
     3781 agcacgtcca
//
LOCUS       DATMDK010000016         3398 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_243037,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000016 DATMDK010000000
VERSION     DATMDK010000016.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3398)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3398)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3398
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_243037"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..742)
                     /locus_tag="VNN98_00345"
     CDS             complement(<1..742)
                     /locus_tag="VNN98_00345"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="pilus assembly protein CpaE"
                     /protein_id="HWM60561.1"
                     /translation="MAKLPDVESFGAAPHERPVPRISIHAFCEFPDTGSALQRAGTDR
                     RLSKAHLQVQLGGIDAAIEHYTGQITPNLLVVETKLGGQDALGELDRLAEVCDPATKV
                     IVVGRTNDVELYRELMRRGASEYLVAPLSPLQLIEVISGLYLDPGASPIGRVVAVIGA
                     RGGAGSSTLSHNIGWCIAEELHINTTIVDLDLPFGTVGLDFNDEASQGVCDALSAPER
                     LDDVLLDRLLLKRGEHLSLFTAPAALERD"
     gene            complement(754..1428)
                     /locus_tag="VNN98_00350"
     CDS             complement(754..1428)
                     /locus_tag="VNN98_00350"
                     /inference="COORDINATES: protein motif:HMM:TIGR02522.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CpaD family pilus assembly protein"
                     /protein_id="HWM60562.1"
                     /translation="MKLDYLLRAAALASILAAGSCSVTNDGSMISEDGVANHPIAVEP
                     SYRELKVYFAGGAEGVSADDAVKFDEFLADYRAHGNGSLGISVPGGAPSRAAITFFAE
                     RAAATGISRDKILVSTHDVANGDLRVDVSYIAYNASTQACGDWSENLAFSGDNLTPKN
                     FGCSIQHNIAAMVADPRDLLQPRRFDPADANRAGTVITNYELGKPTPAEKTNDQSGAV
                     SDINKQ"
     gene            complement(1438..2922)
                     /locus_tag="VNN98_00355"
     CDS             complement(1438..2922)
                     /locus_tag="VNN98_00355"
                     /inference="COORDINATES: protein motif:HMM:NF012485.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II and III secretion system protein family
                     protein"
                     /protein_id="HWM60563.1"
                     /translation="MTISTHGASSHQRLTLSLDKAAVVQLDADARDVLVSNPDLVDAV
                     VRTPRRIFLLATKVGQTNAFFFDAAGKQILSLDIRVEKDVVDLTGLMKASLPNSAIQV
                     QAMNDNIVLTGSVASALESTRAADLAAHFLGDPKKVINMLSVAGGAQVMLKVRIAEMN
                     RNVAKQFGIDLTAAATVAGVPGVVGTSNPFGLLGRALSDMSGGQAGSVCTGQFFPQTS
                     TQNASSLSTGNNTVTTITNGVASTVQTIASGLPTVTQSATSTGCSGPNNAQGTLKALE
                     QVGLVHMLAEPNLTAVSGETAKFLAGGEFPVPAGRDQQGNISIQFKQFGVGLSFTPVV
                     IAPGRISLQLSSEVSELTNTGAFILSGSNGTGLTIPALSVRRAETTVELPSGGSFAVA
                     GLMQHNTKQVIDGFPGVKDLPVLGALFRSRDFADDQTELVVLVSAYLVEPKTESDFVS
                     PTDGFVAPTDPETLLLGRLNAVYKKKDDKPVSSQASAPVGFVVR"
     gene            complement(3036..>3398)
                     /gene="cpaB"
                     /locus_tag="VNN98_00360"
     CDS             complement(3036..>3398)
                     /gene="cpaB"
                     /locus_tag="VNN98_00360"
                     /inference="COORDINATES: protein motif:HMM:TIGR03177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Flp pilus assembly protein CpaB"
                     /protein_id="HWM60564.1"
                     /translation="DRVDVILTRKTQGTPPLSYAKTILTNLRVLAVDQTFRQDKDTRT
                     VVGKTATVEVTPEQAETISAAASAGQLSLALRPLSDANIASADDIARKHRTAVVDGPV
                     SVIRYGMAGSSGQQGKPQ"
BASE COUNT          610 a         1014 c         1156 g          618 t
ORIGIN      
        1 agtcgcgctc caaagcggcg ggcgcggtaa acagcgagag atgttcgccg cgcttgagca
       61 gcagacggtc cagcaggaca tcgtccaggc gttcgggcgc gctcagcgcg tcgcagacgc
      121 cctggctggc ttcgtcgttg aagtccaggc ccacggtgcc gaacggcaag tccagatcga
      181 cgatggtggt gttgatgtgc agttcctcgg cgatgcacca gccgatattg tgcgacaggg
      241 ttgaggaacc cgcgccgccg cgggcgccga taacggccac gacgcggccg atcggcgagg
      301 caccgggatc gagatacagg ccggaaatca cttcgatcag ctgcagcggc gacagcggcg
      361 ccaccagata ttccgatgcg ccgcggcgca tcagctcgcg gtacaattcc acatcgttgg
      421 tgcggcccac cacgatcacc ttggtcgccg gatcgcagac ttccgccagg cggtcgagtt
      481 cgcccaaggc gtcctggccg ccgagcttgg tttccacgac cagcaggttg ggcgtgatct
      541 ggccggtata atgctcgatc gccgcatcga tcccgcccag ctgcacctgc agatgcgcct
      601 tggacagacg gcggtcggtt cccgcgcgct gcaacgcgga cccggtatcg gggaattcgc
      661 agaaagcgtg gatggaaatg cgcggcacgg gacgctcatg cggcgccgcg ccgaaacttt
      721 ccacgtctgg cagtttggcc atgaggcgaa ttcctattgc ttgttgatgt ccgaaacggc
      781 gcccgactga tcgttggtct tctcggccgg ggtcggcttg cccagctcgt aattggtaat
      841 caccgtgccg gcgcgattgg cgtcagccgg gtcgaagcgg cgcggttgca acagatcgcg
      901 cggatcggcc accatggcgg cgatattatg ctgtatcgaa cagccgaaat tcttgggcgt
      961 gagattgtcg ccgctaaagg cgagattttc agaccagtcg ccgcaagcct gggtgctggc
     1021 gttataggcg atgtagctga catccacccg caaatcgcca ttggcgacgt catgggtgga
     1081 gaccaggatc ttgtcgcggc tgatgcccgt ggcggcggca cgctcggcga agaaggtaat
     1141 ggcggcgcgg ctgggggcgc cgcccggcac gctgatgccc agcgagccgt tgccatgggc
     1201 gcgatagtcg gccaggaact cgtcgaactt gacggcgtcg tcggcgctga cgccttccgc
     1261 gccgccggca aaatagacct tcaattcacg ataggacggt tcgacggcaa tcgggtgatt
     1321 ggcgacgccg tcttccgaaa tcatgctgcc gtcattggtg accgagcagc ttcctgccgc
     1381 caggatggaa gcaagggcgg cagcgcgaag cagataatcc agtttcatag cggtctccta
     1441 gcgcacgaca aagccgacag gcgccgaggc ctgggatgat accggcttgt cgtctttctt
     1501 tttgtaaacc gcgttcaggc ggcccagcag aagcgtttcc ggatcagtcg gcgccacaaa
     1561 gccgtcggtc ggcgaaacga aatcgctctc ggttttgggt tcgaccagat aggcgctgac
     1621 cagcaccacc agttcggtct ggtcgtcggc aaagtcgcgg ctgcggaaca gcgcgcccag
     1681 caccggcaga tccttcaccc cgggaaagcc gtcgatcact tgcttggtgt tgtgctgcat
     1741 caagccggcg accgcgaagc tgccgccgga gggcagctcg acggtggttt cggcgcggcg
     1801 caccgacagc gccggaatgg tgaggccggt gccgttggag cctgacagga tgaaggcgcc
     1861 ggtgttggtc agttcgctga cctcgctgga aagctgcaag ctgatgcggc ccggcgcgat
     1921 caccacgggc gtgaaggaca ggccgacgcc gaactgcttg aactggattg agatgttgcc
     1981 ctgctggtcg cggcccgcgg gaaccgggaa ttcgccgccg gcaaggaatt tcgcggtctc
     2041 gccgctgacg gcggtgaggt tgggttcggc cagcatatgc accaggccca cctgttccag
     2101 cgctttgagg gtaccttggg cgttgttggg gcccgagcag ccggtagagg tggcgctttg
     2161 cgtgacggtg ggcagaccgg acgcgatggt ctgcaccgtg ctggcgacgc cgttggtaat
     2221 agtggtcacc gtattgttgc ccgtgctcag gctggaagcg ttttgcgtac tggtttgggg
     2281 aaagaactgg cccgtacaga ccgagcctgc ttggccgccg gacatgtcgc tgagcgcccg
     2341 gcccagcagg ccaaaggggt tggaggtgcc aaccacaccg ggaacgccgg cgaccgtggc
     2401 cgctgccgtc aggtcaatgc cgaactgctt tgcgacgttg cgattcattt cggcgatacg
     2461 gaccttcagc atcacctggg cgccgcccgc cacgctgagc atgttgatga ccttcttggg
     2521 atcgcccagg aagtgcgccg ccaggtcggc agcgcgggtg gattccaggg cgctggcgac
     2581 cgagccggtc agcacgatat tgtcattcat cgcctgcacc tggatggcgg aattgggcag
     2641 gctggccttc atcaaccccg tcaggtccac cacgtccttt tcgacgcgga tatcgaggct
     2701 gaggatctgc ttgccggcgg cgtcgaagaa gaaggcgttg gtctggccca ccttggtggc
     2761 cagcaggaag atgcggcgcg gcgtgcgcac caccgcatcc accaagtcgg gattggacac
     2821 cagcacatcg cgtgcatcgg cgtcgagctg gaccacggcc gccttgtcca gcgacaaggt
     2881 caggcgttga tggctggacg ccccatgggt ggagatggtc atcacccgcg catttgcttc
     2941 atccagcgcg ggacgggctt ggactgcaga accggcgaaa gtcgcggtaa gcgcaatggg
     3001 aagaagaaga ccaagaaaaa ttttgcgggc gaacatcatt ggggctttcc ctgctggccg
     3061 ctggacccag ccatgccgta gcggatcacg gaaaccggac cgtcaacgac ggcggtgcgg
     3121 tgcttgcggg caatgtcatc ggcgcttgcg atattggcgt cgctcaaggg acgcagcgcc
     3181 agcgacaact ggcccgcgga cgcggcggcg gaaatcgtct cggcttgttc cggtgtcact
     3241 tcgacggtgg cggtcttacc caccacggta cgggtgtcct tgtcctggcg aaaggtctgg
     3301 tccaccgcca atacacgcag attggtcaag atggtcttgg cgtagctgag cgggggagtg
     3361 ccctgggtct tgcgggtcaa gatcacgtcg acccggtc
//
LOCUS       DATMDK010000017         2767 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2526467,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000017 DATMDK010000000
VERSION     DATMDK010000017.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2767)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2767)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2767
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2526467"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..847)
                     /locus_tag="VNN98_00365"
     CDS             complement(<1..847)
                     /locus_tag="VNN98_00365"
                     /inference="COORDINATES: protein motif:HMM:NF025341.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartyl protease family protein"
                     /protein_id="HWM60565.1"
                     /translation="MTKIGAGLLSALMLLVAASDSARATNPVSLYRIAFQDRFVTDVF
                     INGHGPFTFVIDSASSRTIIYEHVRAQLGLKASEPDPITVYGINQQARAMAIAPDRLN
                     VGGQDIASLTMGVLPDTGESGDPDGVLGIDVLSRYFVVLDRAGMQLRLLPRDGGAAKA
                     YTRWDQVALTPRALTNIPVDFWYVTMAVNGHVIQALFDLGAGITLLNWPAAERLGVER
                     RAASRKYGPPPEGLRDVLGKIAPAVVVKDVTITFPDQAWRKQDILVSDAPVFEFFGMG
                     EKPGAI"
     gene            1090..1443
                     /locus_tag="VNN98_00370"
     CDS             1090..1443
                     /locus_tag="VNN98_00370"
                     /inference="COORDINATES: protein motif:HMM:TIGR04433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UrcA family protein"
                     /protein_id="HWM60566.1"
                     /translation="MSHHNARPITAAALLCAMLAAIPLSAGAAETRSVTVPAKDLNLA
                     TDAGRTVLKNRIALAVRAVCDPAYGRTPSEVKAYAACRQTARASAAPQVDAMVANAQT
                     GGKVAADRTVAAPAE"
     gene            1740..2018
                     /locus_tag="VNN98_00375"
     CDS             1740..2018
                     /locus_tag="VNN98_00375"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM60567.1"
                     /translation="MFDHRSIAVTMKSLMLAGSFVTLAAAAPAMADTDSATSCRTLAQ
                     QARAALSNASGDVTEAKTESSAGLQACNFGLWQNGSAHYRKALTLLGK"
     gene            complement(2373..>2767)
                     /locus_tag="VNN98_00380"
     CDS             complement(2373..>2767)
                     /locus_tag="VNN98_00380"
                     /inference="COORDINATES: protein motif:HMM:NF016296.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="LytTR family DNA-binding domain-containing
                     protein"
                     /protein_id="HWM60568.1"
                     /translation="RVRSHLKTATQGIPATPSPWTREFWVPHRMEVIRIAAGDIDLIE
                     AERDYMRLHVGARSFLLHQTITELERRLNPAEFVRLHRSTLARRDRIVGFKHNGSGAW
                     EAQLRDGRWLRVGRTYLANARAMAGPST"
BASE COUNT          508 a          913 c          864 g          482 t
ORIGIN      
        1 cgatggcgcc gggcttttcg cccatcccga aaaattcgaa caccggagcg tccgacacca
       61 ggatgtcctg cttgcgccag gcctggtcag ggaatgtgat cgtcacgtcc ttgacgacga
      121 cggccggcgc gattttgccc aggacatcgc gcaggccttc gggcggcgga ccgtatttgc
      181 gcgaggcggc gcgtctttcc acacccaggc gctcggccgc cggccagttc agcaaggtga
      241 tgccggcacc cagatcgaac agcgcctgaa tgacatgacc gttgacagcc atggtgacgt
      301 accagaaatc gaccggaata ttggtgagag cgcgcggcgt cagcgccacc tggtcccagc
      361 gggtataggc cttcgcggcc ccgccgtccc ggggcaacag ccgcagctgc atgccggcgc
      421 ggtccagcac cacgaaatag cgcgacagga catcgatgcc cagcacgccg tcgggatcgc
      481 cgctctctcc ggtatccggc aggacgccca tggtaaggct ggcgatatcc tggccgccga
      541 cattcagccg gtcgggcgcg atcgccatgg cgcgcgcttg ctgattgata ccgtagacgg
      601 tgatggggtc cggctccgac gctttcagcc ccagctgggc gcgcacatgc tcatagatga
      661 tggtgcggct gctggcgctg tcgatcacga atgtgaaggg accgtgaccg ttgatgaaca
      721 catcggtgac gaagcgatcc tgaaaagcga tccggtacag cgaaaccggg ttggtggcgc
      781 gcgcgctgtc cgatgccgcc accagcagca tcaaggcact cagcaatccc gcgcctattt
      841 ttgtcatctg cgtgtaactt agccgtaaag gggcgcgcgg aacagttggt tgatgctcgg
      901 gccagacttt cagcgccgtc gcccgccccc cccgtgcggt tcgtcgagcc aatcctgccg
      961 ttggtcggca cgaaaatccg cccgtggaaa gccctgcggc gctgatcgaa cgccgcgcga
     1021 caccagggcg ggcggcgcaa taggttgctg acggtcactg caatccccga ccgcccgaag
     1081 gagaacccca tgtcccatca taacgcccgt cccatcacgg ccgccgcttt gctttgcgca
     1141 atgcttgcgg caattccgct tagcgccggc gccgctgaaa cacggagtgt caccgtcccg
     1201 gccaaagacc tcaatctcgc cacggatgcc ggccgcaccg tgctcaagaa ccgtatcgcc
     1261 cttgctgtcc gggcggtctg cgaccccgcc tatgggcgga cgccatcgga agtcaaagcc
     1321 tatgccgcct gcaggcagac ggcccgcgcc agcgccgcgc ctcaagtcga cgccatggtc
     1381 gcgaacgcac agaccggcgg gaaagttgcc gctgaccgca ccgttgcggc accggcggag
     1441 taaggcgggc cattcggttt gttggccgga tgatcgccgg gcgggaggcg gtggtccccc
     1501 tctcgcccat tttttatgta ttggaaccgg ccatggagcg gttcatcggc tgccgacatg
     1561 acaataataa tacggatatc attgccgttc gtcgaatggg tcctgccgtt cgtcggcgca
     1621 aagcccattt gtggaagact gtgcgacgcc ggtcgaacac accgcgacac cggctggggc
     1681 ggcgcaatag gttgttgatg gccatcgcaa ttatccccgg ccacctgaag gaggacccta
     1741 tgttcgacca ccgttccatc gctgtaacca tgaagtccct gatgcttgcc ggctctttcg
     1801 tcaccttggc cgctgccgct ccggcaatgg ccgataccga tagtgccacc agctgccgca
     1861 ccctggcgca acaggcaaga gccgccctgt ccaacgcctc cggcgatgtg acggaagcca
     1921 aaactgaaag cagcgccggc ttgcaggcct gcaacttcgg cctctggcag aacggctctg
     1981 cccactaccg caaggcgctg accctgctgg gcaagtaatt cccaaccagt cgaacctcga
     2041 aaggcggcgg atcaaaaagg ctgtgacccc tatcacagcc tttccgcagc ctcttttttt
     2101 gctttcgttc aatgcgcgcg caggaaaaga tcgagggtca gcgccacgcc gcctatgggc
     2161 ggacgccgtc ggaagtcaaa gcctacgccg cctgcaagca gacggcgcgc gccagcgccc
     2221 cagtttaacg ccatggtcgc gaatgctcag acaggcggga aaattgccgc tgaccgcact
     2281 gttgcggcgc cggcggggcg ggccattcgg tggttgttgg ccgcatgact gccgggcggg
     2341 aggcggtggt ccccttctcg cccatttttt cgctatgtac tgggaccggc catggcgcgg
     2401 gcattggcga gataggtgcg gccgacacgc agccagcgtc cgtcccgcag ctgtgcctcc
     2461 caagcccccg atccattgtg cttgaaaccg acaatccggt cgcgccgcgc caatgtggaa
     2521 cggtgcaagc gcacaaactc cgccgggttc agcctgcgct ccagctcggt gatggtttga
     2581 tgcagcagga aggagcgcgc gcccacatgc agccgcatgt aatcgcgctc ggcctcgatc
     2641 agatcgatat ccccggcggc gatacggatg acttccatgc gatgcggcac ccagaactcc
     2701 cgcgtccagg gcgatggcgt ggccggtatg ccctgcgttg cggtcttgag gtgggagcgg
     2761 acgcgga
//
LOCUS       DATMDK010000018         2646 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2295681,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000018 DATMDK010000000
VERSION     DATMDK010000018.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2646)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2646)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2646
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2295681"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..277
                     /locus_tag="VNN98_00385"
     CDS             <1..277
                     /locus_tag="VNN98_00385"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM60569.1"
                     /translation="KIIVPQGLDQKNELDRACAMLSALDVVISAPTAVSWLAAGAGVR
                     TLKLLYGPVWTAMGCDYEPFAPSCECIVPGTPGDWADVFNQVATKLS"
     gene            complement(261..2093)
                     /locus_tag="VNN98_00390"
     CDS             complement(261..2093)
                     /locus_tag="VNN98_00390"
                     /inference="COORDINATES: protein motif:HMM:NF014409.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NTP transferase domain-containing protein"
                     /protein_id="HWM60570.1"
                     /translation="MSPDFDPTSEREHIRVVAVIQARMGSARLPGKVLQPIAGKPLLW
                     HIVHRLKACHLLEEIAVATSANPADEAIVEWCNAEGVTVVRGPENDVLARYARAAEKL
                     DADIIVQVSCDVPFIDAGFVDHLIATLIEQDGDYVLLEDGAECAHEGVDPFSRRALDR
                     LMMDAAHDPEAREHVTGYFKLHPDFVKIVRAKPYAPLDKKSRRFTIETPDDLAFAEAV
                     HARLDAKAGTASLADLLLLLEREPELNAINAGVRQKQIALSGPAGSLALIRCDGGGKF
                     GYGHVKRMVALARSLRDREGIGATFALNGSEDAAIPIRRAGFEVAMLRGAGDLESLID
                     ANRPDILLLDGREGPSRTELEKLKRGAKVTAVIDDGHDRRLACDYAYYPPVPGALALD
                     WSGSNTLPRLGWEWALLGLNPSTVQKNQEARAPASRPTVLVAMGGSDPHGLTLRMAKA
                     LAVLDSVFRIRFVIGTGMKDAPGVARALVALKKNYETVEGADDLAIEYASADVALCAF
                     GVTAYELAACGIPALYLGLSEDHVASASAFAEAGMGLSLGLADKASDAEIARSVQWLL
                     NKPAARREMRGCGLALLDGQGAARIAADLACALSAARTPLRTAL"
     gene            2174..>2646
                     /locus_tag="VNN98_00395"
     CDS             2174..>2646
                     /locus_tag="VNN98_00395"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM60571.1"
                     /translation="MAKTLLIISGGEEAAGAARRARGLGHTVVVSDADPQAPAFAFAD
                     SCLIADVHGANETAAAAERYNRKIRKIDGVLCAADAALTAATVADRLRLPGMPLHVAE
                     LVSDRLAIRRCFQSAGIAAPWHAEVSTPQELQRVAIAKGRSLVVKPVDNRGLDGV"
BASE COUNT          449 a          904 c          846 g          447 t
ORIGIN      
        1 caagatcatc gtgccgcaag gcctggatca aaaaaatgaa ctggaccgcg cctgtgccat
       61 gctgtcggcg ttggacgttg tgatcagcgc tcccaccgcc gtttcctggc tggcggcagg
      121 cgccggcgtg cggaccttga agttgctgta tggcccggtg tggacggcaa tgggctgcga
      181 ttacgagccc tttgccccgt cctgcgaatg catcgttccg gggacgcccg gcgattgggc
      241 ggacgtcttc aaccaggtcg ctacaaagct gtcctgagcg gcgtgcgcgc tgcggacaag
      301 gcgcaggcga gatcggcggc aatgcgcgcc gcgccctgcc cgtccagcag cgccagaccg
      361 cacccgcgca tttcgcgccg cgccgccggc ttgttcagca gccactgcac actgcgcgcg
      421 atctccgcat ccgaggcctt gtccgccagg cccagcgata gccccatgcc ggcttcggca
      481 aaggccgaag cggaggcgac atggtcctca ctcagcccca gataaagggc cgggatgccg
      541 cacgcggcca gttcatacgc cgtgacgccg aacgcgcaca gcgccacatc ggcgctggca
      601 tattcgatgg ccagatcgtc ggcgccttcc accgtctcgt aattcttctt gagcgccacc
      661 agggcgcgcg ccacaccggg cgcgtccttc atgccggtgc cgatgacaaa gcggatgcgg
      721 aacactgaat ccagcaccgc cagtgccttg gccatgcgca aagtcagccc atggggatcg
      781 ctgccgccca tcgccaccag cacggtggga cgcgaggccg gcgcgcgcgc ctcctgattt
      841 ttttgaaccg tgctggggtt gaggcccagc aacgcccatt cccagcccag ccgcggcaag
      901 gtgttggagc ccgaccagtc cagcgccagc gcacccggca ccggcggata ataggcatag
      961 tcgcaggcca ggcggcggtc atggccgtca tcgatcaccg ccgtcacctt ggcgccgcgc
     1021 ttgagctttt ccagttccgt gcggctgggg ccttcgcggc cgtccagcag caggatgtcg
     1081 gggcgattgg cgtcgatcaa gctttccagg tcgccggcgc cccgcagcat cgccacctcg
     1141 aatcccgcgc ggcggatggg gatggcggcg tcttcgctgc cattcagcgc gaaggttgcg
     1201 ccgatgcctt cgcggtcgcg cagggaccgt gccagcgcca ccatccgctt gacgtggcca
     1261 tagccgaatt tgccgccgcc atcgcagcgg atcagtgcca aacttccagc aggaccggac
     1321 agcgcgatct gcttttgccg cacaccggca ttgatcgcgt tcaattccgg ctcgcgctcc
     1381 agcagcagca gaagatcggc cagcgatgcg gtgcccgcct tggcgtcaag ccgcgcatgc
     1441 accgcttcgg cgaacgccag atcgtcgggc gtttcgatgg tgaaacggcg gctcttctta
     1501 tccagcggcg catagggttt ggcgcgcacg atcttcacaa agtcgggatg cagcttgaaa
     1561 tagccggtga catgttcgcg cgcctccgga tcatgggcgg cgtccatcat aagccggtca
     1621 agcgcgcgcc ggctgaacgg gtcgacccct tcatgggcgc attccgcgcc gtcttccagc
     1681 agaacgtaat cgccgtcttg ctcgataagc gtggcgatca agtgatccac aaagccggca
     1741 tcgatgaagg gaacatcgca ggacacctgc acgatgatgt cggcgtccaa cttctcggcg
     1801 gcgcgggcat agcgggccag cacatcgttt tcgggaccgc gcaccacggt gacaccctcg
     1861 gcgttgcacc attccacgat cgcttcatcg gccgggttcg cgctggtggc caccgcgatc
     1921 tcctccagca ggtggcaggc cttcaggcga tgcacgatgt gccacaagag cggtttgccc
     1981 gcgatgggtt ggagcacctt gccgggcaga cgcgccgagc ccatccgcgc ctggatgacg
     2041 gcgacgactc tgatgtgctc gcgttcgctg gtgggatcga aatccgggct cattaacgga
     2101 atctaaagag cgtatggcta agaagccgtt aacgggatgg aacccgtgaa ccgcatccag
     2161 gagccggtcc gttatggcca agacgctgct gataatttcc ggcggcgaag aggctgccgg
     2221 ggccgcgcgc cgcgcccggg gtttgggcca taccgtggtg gtctccgacg ccgatccaca
     2281 ggcgcccgcc ttcgccttcg ccgattcctg cctgatcgca gacgtgcatg gcgccaacga
     2341 gaccgcggcg gccgccgaac gctacaaccg caagatccgc aagatcgacg gtgtgctgtg
     2401 cgccgccgac gccgccctga ccgccgccac cgtggcggac cggctgcgcc tgccgggcat
     2461 gccgctgcat gtggccgaac tggtcagcga ccgcttggcg atccggcgct gctttcaatc
     2521 cgccggcatt gccgcgccct ggcacgccga agtctccacg ccacaggaac tgcagcgcgt
     2581 cgccatcgcc aagggccgct ctcttgtcgt caagccggtg gacaatcgcg gactcgatgg
     2641 cgttca
//
LOCUS       DATMDK010000019         3313 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1840179,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000019 DATMDK010000000
VERSION     DATMDK010000019.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3313)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3313)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3313
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1840179"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2124
                     /locus_tag="VNN98_00400"
     CDS             <1..2124
                     /locus_tag="VNN98_00400"
                     /inference="COORDINATES: protein motif:HMM:NF012789.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UvrD-helicase domain-containing protein"
                     /protein_id="HWM60572.1"
                     /translation="AHILATRRAWPGQILCVTFTNKAAREMKERIGALIGGVVEGMQW
                     LGTFHSIGAKMLRRHAELAGLKSNFTILDTDDQLRLMKQLIEAEGVDEKRWPARTLAS
                     MIDSWKNRGLRPDDVSEGEAQGYAFGKGKSLYRQYQERLKALNAADFGDLLLETLHIL
                     KTQPDILADYRDRFRYMLVDEYQDTNVVQYLWLNLLAKGSGNVCVVGDDDQSIYGWRG
                     AEVENILRFERDFPGAKVIRLERNYRSTPVILGAASGLIAANKGRLGKTLWTEGEPGE
                     KIRVAGVWDAEEEARNVAAEAEDQHRQGHLYSQMAVLVRASFQMREFEDRFISLGLPY
                     RVIGGPRFYERQEIRDAMAYLRLIAQGDDDLAFERIVNKPKRGIGDASVALLHSFARL
                     RQLPLLAAAREIAETDELPPKARKALSELAGNFARWSDTARVLPHTELAEMVLDESGY
                     TDMLKADKSAEAPGRLDNLKEFVRSMESFESLAAFLEHVSLVMEIAQDESGDRINLMT
                     LHAAKGLEFDTVFLPGWEEGLFPSQRTMDENGLAGLEEERRLAYVGITRAKKRARISF
                     AANRRVHGSWQSALPSRFIKEIPEEHVDATVDEGFYGGYTGFRDNQNAADFGSTYDSP
                     GWKRAQANRAAAGGVRARPPLIEAQAWSVQTSDPGASHYARDDRVFHQKFGYGRVRFV
                     EGNKLTVEFDKAGEKRVIDQFVSRA"
     gene            complement(2173..2460)
                     /locus_tag="VNN98_00405"
     CDS             complement(2173..2460)
                     /locus_tag="VNN98_00405"
                     /inference="COORDINATES: protein motif:HMM:NF013691.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004518 - nuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GIY-YIG nuclease family protein"
                     /protein_id="HWM60573.1"
                     /translation="MSKTYDVYILASKRNGTLYIGVTNDLARRLREHQEELVPGFTKT
                     YGVKMLVYFEVFDNIEQAIYREKRLKKYKREWKISLIQQSNVAWRDLADTL"
     gene            2517..>3313
                     /locus_tag="VNN98_00410"
     CDS             2517..>3313
                     /locus_tag="VNN98_00410"
                     /inference="COORDINATES: protein motif:HMM:NF018076.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11 methyltransferase"
                     /protein_id="HWM60574.1"
                     /translation="MSANPPLWKASVALTKTEAGDIAAALELDGSAQAVLIVEEPFAD
                     GAVVEALYTEAPDAAYLSRIAGRAITVAPLPDQDWIRLSQQGLPPVRAGRFFVYGAHD
                     AGTVPHGVIPMKIEAGLAFGTGHHETTALCLAVLSELACKRRFRNVLDLGCGTGLLAI
                     GAAKLWKHPVLASDIDPVAVEVTHDNARANGVAPLVRAVTADGLTNPVLAGGAPYDLL
                     IANILAGPLTQLAPGIVKALAPGAMLVLSGLLRNQEALVTSFYRDLR"
BASE COUNT          619 a         1035 c         1054 g          605 t
ORIGIN      
        1 gcccatatcc tggccacccg ccgcgcctgg ccgggacaga ttctctgcgt caccttcacc
       61 aacaaggcgg cgcgcgagat gaaggaacgc atcggcgccc tgatcggcgg cgtggtcgag
      121 ggcatgcaat ggctgggcac cttccattcc atcggcgcca agatgctgcg ccgccatgcc
      181 gagttggcgg ggctgaaatc caatttcacg attctggaca ccgacgacca gttgcggctg
      241 atgaagcagt tgatcgaggc cgaaggcgtg gacgagaaac gctggcccgc ccgcaccctg
      301 gccagcatga tcgatagctg gaaaaaccgc ggcctgcggc ccgacgatgt ctcggaaggc
      361 gaggcccagg gctatgcctt cggcaagggc aagtcgctgt accgccagta tcaggaacgg
      421 ctgaaggcgc tgaacgccgc cgacttcggc gacctgctgc tggagacctt gcacatcctc
      481 aagacccagc ccgacatatt ggccgattac cgcgaccgct tccgctacat gctggtggac
      541 gaatatcagg acaccaatgt ggtgcagtat ttgtggctga acctgctggc caagggcagc
      601 ggcaatgtct gcgtggtggg cgacgacgac cagagcatct atggctggcg cggcgcggaa
      661 gttgagaaca ttttgcgctt cgagcgcgac tttcccggcg ccaaggtcat caggctggaa
      721 cgcaactacc gcagcacccc cgtcatcctg ggcgcagcgt ccggcctgat cgccgccaac
      781 aagggccggc tgggcaagac cttgtggacc gaaggcgagc cgggcgagaa aatccgcgtc
      841 gccggggtat gggacgctga ggaagaagcg cgcaatgtcg ctgccgaggc cgaggaccag
      901 catcgtcagg gccatcttta ttcccagatg gcggtgctgg tgcgcgcctc tttccagatg
      961 cgcgaatttg aagatcgctt tatctccttg ggcctgccct atcgggtgat cggcggcccg
     1021 cgcttttatg agcggcagga aattcgcgac gccatggcct atttgcgcct gatcgcccag
     1081 ggcgacgacg atctggcctt tgagcgcatc gtcaacaagc ccaagcgcgg catcggcgat
     1141 gccagcgtgg cactgctgca cagctttgct cgcttgcgac aattgccgtt gctggcggcg
     1201 gcgcgcgaga tcgccgagac ggatgaactg ccgcccaagg cgcgcaaggc gctgagcgag
     1261 cttgcgggca atttcgcgcg ctggagcgac accgcccggg tactgcccca taccgaactg
     1321 gccgagatgg tgctggacga aagcggctat accgacatgc tgaaggctga caagtcggcg
     1381 gaagcgccgg ggcggctgga caatctgaaa gagttcgtcc gctcgatgga aagcttcgag
     1441 agcctggcgg ccttcctgga gcatgtgtcg ctggtgatgg aaatcgccca ggatgaatcc
     1501 ggcgaccgca tcaatctgat gaccctgcac gccgccaagg ggctggagtt cgacaccgtc
     1561 ttcctgcccg gctgggagga aggcttgttc ccgagccagc gcaccatgga tgagaacggt
     1621 ctggccggac tggaggagga acgccgcctg gcctatgtcg gcatcactcg cgccaaaaag
     1681 cgggcgcgca tttcctttgc cgccaaccgc cgggtgcatg gttcctggca aagcgccttg
     1741 ccctcgcgct tcatcaagga aatccccgaa gagcatgtcg atgccacggt ggatgaaggc
     1801 ttttacggcg gctataccgg cttccgcgac aatcagaacg ccgccgattt tggcagcacc
     1861 tatgactcgc cgggctggaa acgcgcccag gccaaccgcg cggccgcggg tggcgtgcgg
     1921 gcacgcccgc cgctaattga agcccaggct tggagcgtgc agacctcaga tcccggcgcc
     1981 tcgcactatg cccgcgacga ccgtgtgttc caccagaagt tcggctatgg ccgggtacgc
     2041 tttgtcgaag gcaacaagct gacggtggag ttcgacaagg ccggcgaaaa gcgggtgatt
     2101 gaccagttcg tgagccgggc ttaacgccca caattgtcat cacccgcgaa tgcgggtgac
     2161 ccaggtggaa tttcacagtg tatccgccaa atcccgccat gcgacattgc tctgctggat
     2221 caagctgatc ttccattccc gcttgtattt cttcaaacgc ttctcgcggt agatagcctg
     2281 ttcaatgtta tcgaagactt caaaatagac cagcatcttc acgccatagg tcttggtgaa
     2341 acccggcacc aactcttctt ggtgttctcg tagtcgccgc gcaagatcat tggtgacgcc
     2401 gatatagagc gtgccattgc gcttgcttgc caggatataa acgtcatagg tcttcgacat
     2461 cagtgcggta tcacctgggt ggcccgcatt cgcgggccat gacattagag tgtatgatga
     2521 gcgcaaaccc tcccctctgg aaagcttccg tcgcactgac caagacggaa gccggcgata
     2581 tcgccgccgc gctggaattg gacggcagcg cgcaagccgt gctgatcgtc gaagagccct
     2641 tcgccgacgg cgcggtggtg gaagcgctgt ataccgaagc gccggatgcc gcgtacctgt
     2701 cgcgcattgc cggccgcgcc atcaccgtcg cgcccttgcc cgatcaggat tggatccggc
     2761 taagccagca gggtctgccc cccgtgcggg ccgggcgctt ctttgtctat ggcgcgcatg
     2821 acgcgggcac ggtgccgcat ggcgtgatcc cgatgaagat cgaggcgggg ctggccttcg
     2881 gcaccggcca tcatgaaacc acggcgctgt gcctggcggt attgagcgaa ctcgcctgca
     2941 agcgccgctt ccgcaacgtg ctggatctgg gctgcggcac cggcctgctg gcgatcgggg
     3001 cggcgaagtt gtggaagcac ccggtgctgg cgtcggacat cgatcccgtc gccgtcgagg
     3061 ttacccatga caatgcccgc gccaatggcg tggcaccgct ggtccgcgcc gtcaccgccg
     3121 acggcttgac caatcccgtt ttggcggggg gcgcacccta tgacctgttg atcgccaaca
     3181 tattggccgg gccgctgacc cagctcgctc ccggcatcgt caaggccctg gcccctggcg
     3241 ccatgctggt gctgtcgggc ctgctgcgca accaggaggc gctggtcacc agcttttacc
     3301 gggacctgcg ctt
//
LOCUS       DATMDK010000020         2546 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1840382,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000020 DATMDK010000000
VERSION     DATMDK010000020.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2546)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2546)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2546
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1840382"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..779)
                     /locus_tag="VNN98_00415"
     CDS             complement(<1..779)
                     /locus_tag="VNN98_00415"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM60575.1"
                     /translation="MVGRFSFLVCVLTVWLAAASAPAQPAAPAHITPVVQPAIDGILQ
                     ALRSHPLVGLGDFHNLAQEEDFFAALVRDPRFARDFRDIVVEFGSASSQPLLDHYLAG
                     ENLTATELRSIWSDRVGWVPSGVRLGYINFFAQVRAVNLTLPADRRIRVWLGDPPIDW
                     SLVRTKADWLPILRQRDIHAAALIEREILSKGRKALVIYGGDHFYGHPESGPLQNLGP
                     LLNQKHPGALFIVTPYIGFNEKACSQAFERSSRAWPVPAFA"
     gene            complement(1087..>2546)
                     /locus_tag="VNN98_00420"
     CDS             complement(1087..>2546)
                     /locus_tag="VNN98_00420"
                     /EC_number="4.1.1.49"
                     /inference="COORDINATES: protein motif:HMM:NF006822.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004612 - phosphoenolpyruvate
                     carboxykinase (ATP) activity [Evidence IEA];
                     GO_process: GO:0006094 - gluconeogenesis [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="phosphoenolpyruvate carboxykinase"
                     /protein_id="HWM60576.1"
                     /translation="RTGVHTGRSASDKFVVRDGLSESQVWWDNNKPMSEGHFDALHAD
                     MMVHAQGRELFAKDLFGGADLTHRISVRVVTEFAWHSLFVHQLLIRPTAEELKGFDPE
                     FTIIDLPSFNADPARHGCASQTVIAVNFTKKMILIGGTSYAGEMKKSVFTIMNYLLPA
                     KRVMSMHCSANVGANGESAIFFGLSGTGKTTLSADASRTLVGDDEHGWSENGIFNIEG
                     GCYAKVIKLSREAEPEIFSTTERFGTVLENVVMDEATRTLDLNDATYAENTRAAYPID
                     FIPNASATGRAGHPKNVIMLTADAFGVLPPISRLTPSQAMYHFLSGFTAKVAGTEKGL
                     GKEPRPTFSTCFGAPFMPRHPSEYGNLLRALIAEHRADCWLVNTGWTGGAFGTGSRMP
                     IKATRALLNAALDGSLAHVEMRIDPHFKFRVPVAVPGVDPVILNPRDTWTDKAAYDAQ
                     AEKLVSMFRKNFKKFEAHVGPDVLQAAPGLAEAAE"
BASE COUNT          509 a          778 c          790 g          469 t
ORIGIN      
        1 cttgcaaaag caggcactgg ccaagcacgg ctgctccgct cgaaagcctg cgaacatgcc
       61 ttttcattga atccgatata gggcgtcaca atgaagagcg cgcccggatg cttttgattc
      121 agaagaggtc ccagattttg cagggggccg ctttcgggat ggccatagaa atgatcgcca
      181 ccatagatca ccagggcctt acggcccttg gaaaggattt cccgctcgat cagcgcggcg
      241 gcatggatgt cgcgctggcg caggatcggc agccagtcgg ctttggtgcg gaccagcgac
      301 cagtctatcg gcggatcacc aagccagacg cggattcgcc tgtccgctgg cagcgtcagg
      361 ttcaccgccc ggacctgcgc gaagaaattg atatagccca ggcgaacacc gctgggcacc
      421 cagcccaccc ggtcactcca gatcgaccgc aattccgtcg cggtcagatt ttctccagcc
      481 agataatggt ccaacagcgg ctggctggag gcgctgccga actcgaccac gatgtcgcgg
      541 aaatcacgcg caaagcgagg gtcacgaacc agcgctgcga aaaagtcttc ttcctgcgcc
      601 agattgtgga agtcgcccaa cccgaccaga ggatggctac gcaaggcttg cagaatgcca
      661 tcgatcgccg gctgcaccac cggcgtgata tgggcgggcg cagcgggctg agccggggct
      721 gaagccgccg ccagccaaac cgtcaatacg caaaccagaa agctgaacct gccgaccatc
      781 cgcccctcaa ttcgaggcga tactaactat tcgaagtccg ttttgctgca ccccatgctg
      841 cagcaaaagg tgcagcatga ggttttatgc tgcacttttt gctgcgcggt aagtagttga
      901 aattattata atagtgtcat gacccaccac cccggtccgc gcgaagcgcg gccggagtgt
      961 aaactccatg tgggccaccc aggtgacaca ggctctaagc caacctggag tacgcggcat
     1021 ttgtcccacc tgggtggccc gcattcgcgg gccatgacat agagggacaa acccggcggg
     1081 gaaggcctac tctgccgctt cggccagacc gggcgcggcc tgcagcacgt ccgggccgac
     1141 atgggcttcg aatttcttga aattcttccg gaacatggaa accagcttct cagcctgggc
     1201 gtcgtaagcc gccttgtcgg tccaggtgtc gcgcgggttc aggatcaccg ggtctacccc
     1261 ggggaccgcc accggcaccc ggaacttgaa gtgcgggtcg atccgcatct cgacatgggc
     1321 caggctgccg tccagggccg cattcagcag ggcgcgggtg gctttgatcg gcatacgcga
     1381 gccggtgccg aaagcgccgc cggtccagcc ggtattgacc agccagcaat cggcccggtg
     1441 ttcggcgatc agggcgcgca gcaggttgcc gtattcggac ggatggcgcg gcatgaaggg
     1501 ggcgccgaag caggtggaga aagtgggccg aggttccttg cccaacccct tctcggtgcc
     1561 cgccaccttg gcggtgaagc ccgacaggaa gtggtacatg gcctggctgg gcgtcagccg
     1621 cgaaatgggc ggcagcacac caaaggcgtc cgccgtcagc atgatgacat tcttgggatg
     1681 gccggcgcgg ccggtggcgc tggcgttggg aatgaaatcg atcggatagg cagcgcgggt
     1741 gttttcggca taggtcgcgt cattgaggtc gagcgtgcgg gtcgcctcgt ccatcaccac
     1801 attttccagc acggtaccga aacgttcggt ggtggagaaa atttccggct cggcctcgcg
     1861 gctcagcttg atgaccttgg cgtagcagcc gccttcgatg ttgaagatgc cgttctcgct
     1921 ccagccatgc tcgtcatcgc ccaccagggt gcgcgaggcg tccgccgaca aggtggtctt
     1981 gccggtgccg gaaagcccaa aaaaaatcgc ggattcaccg ttcgcgccga cattggcgga
     2041 acaatgcatg ctcatcaccc gcttggccgg cagcagataa ttcatgatgg tgaagaccga
     2101 tttcttcatc tcgccggcat aggaggtgcc gccgatcagg atcatcttct tggtgaagtt
     2161 caccgcgatc acggtctgcg acgcgcaacc atgccgggcc ggatccgcat taaagctggg
     2221 caggtcgatg atggtgaatt ccggatcgaa gcctttcagc tcctccgcgg tggggcggat
     2281 cagaagctgg tgcacaaaca gcgaatgcca ggcgaattcg gtcaccaccc gcacgctgat
     2341 gcggtgagtg agatcggcgc cgccgaacaa atccttggcg aacagctcgc gcccttgcgc
     2401 atggaccatc atgtcggcgt gcagcgcatc gaaatggccc tcgctcatcg gcttgttgtt
     2461 gtcccaccag acctggcttt cgcttagccc gtcgcgcacc acgaacttgt cgctggccga
     2521 gcgcccggta tgcacccctg tgcgga
//
LOCUS       DATMDK010000021         4351 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2296173,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000021 DATMDK010000000
VERSION     DATMDK010000021.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 4351)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4351)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4351
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2296173"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1178)
                     /locus_tag="VNN98_00425"
     CDS             complement(<1..1178)
                     /locus_tag="VNN98_00425"
                     /inference="COORDINATES: protein motif:HMM:NF025214.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HWM60577.1"
                     /translation="MTSRQLFEQGVAAHRTGNLVQAEKLYRQLLRTDAGYFPALHMLG
                     YLKAQQGRYDEAIPLLNKAVKTNPGDAAARAHHAHALMAAQRFDEALAAYDRMLAAQP
                     DNFEALYNRGVILSQQQQFEEALAPLDRALALQPAAAAVLYNRGVVLAGLERYREALD
                     SYDRALALDPGYAPALANRAMAALNLCDWVRVAKISSELAVTVAPPLTFLGMSGDKQL
                     QLECAAGTVRVLAPKAVPPLWSGEKYRHDRIRLAYVSADFREHAVAFQLAPLIERHDR
                     ARFQVIGIATGLSDDSAIRARLVKGFDRFHDFAALNSDEIARRLREMEIDIAIDLGGH
                     TGLTRLQIFAHRPAPVQVSWLGYPGTTGAPFIDYLIADCVVAPLGDQRFFSEQLVYLP
                     "
     gene            complement(1186..2019)
                     /locus_tag="VNN98_00430"
     CDS             complement(1186..2019)
                     /locus_tag="VNN98_00430"
                     /inference="COORDINATES: protein motif:HMM:NF018038.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ThuA domain-containing protein"
                     /protein_id="HWM60578.1"
                     /translation="MLKLFQPEISRRMLVGGVAAAGAMPAWAASAAKPRALALIGDRY
                     HNPDYIRVSLDKVFHELDIAIDYTMDYAGLSAASLKPYQLLLILRDGMIWPGGYSGPD
                     AYTAYESDLENAGDFPAAKSVMWMTEEQGLAIKNFVAAGGGFYPLHNSSHISLSSKNY
                     REVMGGAYFGHPPLRPFQVHATANAHPITAGMKPFIVNDEQHYVDYDKDPRYVILESE
                     NLDGLTYEGRGTKSPAGWAYDYGKGRMVFTAVGHTIHAMWNPQYVELQKRSVRWLLRD
                     L"
     gene            2199..4145
                     /locus_tag="VNN98_00435"
     CDS             2199..4145
                     /locus_tag="VNN98_00435"
                     /inference="COORDINATES: protein motif:HMM:NF024753.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrroloquinoline quinone-dependent
                     dehydrogenase"
                     /protein_id="HWM60579.1"
                     /translation="MPKTGNRGRWLAAFAVVAMAATSLALAGCDGKPEGTYSHSGGVV
                     DGWPVWGHGSAGQRYSANTQITPENVKDLKLAWTYRTGDLSKPGEHADLAFEATPILA
                     NKTLYLCSPRSRIIALDPTTGKQKWMFDAHPHTAGATVIVCRGVSYWKDSQATSNKEC
                     SQRIFGGTIDGKMWALDADTGKPCEGFGDHGKVDLHQGLGFIEKPGLWGISSAPAIVG
                     DMVITGSKIIDFHNTDMPGGVVRALDARSGKVVWAFTAAPPDMDQGDAAHYPRSAPNV
                     WAPMSVDVARKLIFLPTGTPQVDSYIGKADWDYYGSSVVALNTDTGKPVWHYQFVHKD
                     IWDYDTPSQPLLFDYHAPDGKIVPALAQATKMGTIFVLNRETGVPIFPVKETPVSTGG
                     LQKGLSPTQPIPILPEHEVRITKFQDSDIFGFALVDKWDCLKRFHALVNDGIFTPYYA
                     KPSVDYPISLGGMDWGGLTFDPQRNLLVVNSNNILGAHHLAPHKGSGGYSPLIGTPYR
                     QVYDNMMSMFSAPCNAPPWGRLTGIDMTSGKKVWEVPLGTTRDEAPWPLWFPLGVPNQ
                     GGAITTASGLTFIAATTDRYFRAFETATGKELWRVSLPAAGQSMPMTYRLDAEGKQYV
                     VLSAGGHSALQNKQGDYVIAYALP"
     gene            4154..>4351
                     /locus_tag="VNN98_00440"
     CDS             4154..>4351
                     /locus_tag="VNN98_00440"
                     /inference="COORDINATES: protein motif:HMM:NF012610.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HWM60580.1"
                     /translation="MENLNHTVSQALQPSGPPPTLRAHVVKMLSAGILSGKYKPGDRL
                     NESQIARELSISRIPVREALSQ"
BASE COUNT          847 a         1365 c         1349 g          790 t
ORIGIN      
        1 tccggcaaat acaccagctg ttcgctgaag aagcgctggt ccccgagcgg cgccaccacg
       61 caatcggcaa tcaggtagtc gatgaagggc gcgccggtgg tgccgggata gcccagccag
      121 cttacctgca ccggtgccgg acggtgcgcg aagatctgga gccgcgtcag gccggtatgg
      181 ccgcccaggt cgatggcgat atcgatctcc atctcgcgca ggcggcgcgc gatctcgtcg
      241 ctgttcaggg cggcgaaatc gtggaagcgg tcgaagcctt tcaccagccg ggcgcggatg
      301 gcgctgtcgt cgctgaggcc ggtggcgatg ccgatcacct gaaagcgggc gcggtcatgg
      361 cgctcgatca gcggcgccag ctggaaggcc accgcatgct cgcgaaaatc cgccgagaca
      421 taggccagcc ggatgcggtc atggcggtat ttttcgccag accacagcgg cggcacggct
      481 ttgggcgcta acacgcggac ggtgccggcg gcgcattcga gctgcagctg cttgtcgccg
      541 ctcatgccca ggaaggtgag aggcggtgcg acggtgacgg ccagttcgga cgatattttc
      601 gccacccgca cccaatcaca caggttcaat gccgccatgg cgcgattggc cagggccggg
      661 gcgtagccag gatccaacgc cagcgcccga tcataactgt ccagcgcctc gcgataacgc
      721 tcaagtcccg ccagcaccac gccgcgattg taaagcacgg cggcggcggc aggctgcagc
      781 gccagggcgc ggtcgagcgg agccagcgct tcttcgaact gttgctgctg ggacaggatg
      841 acgccgcgat tgtaaagcgc ctcgaaattg tctggctgcg ccgccagcat gcggtcataa
      901 gcggccagcg cctcatcgaa gcgctgcgcc gccatcaggg catgggcatg atgcgcccgc
      961 gccgcggcgt cgccgggatt ggtcttcacc gccttgttca gcagaggtat ggcttcgtcg
     1021 taccggccct gctgcgcctt gagatagccc agcatgtgca aggcgggaaa ataaccggca
     1081 tcggtacgca gcagctggcg atacagtttc tcggcctgga caagattacc cgtgcgatgg
     1141 gccgctacgc cttgttcaaa caactgacgt gatgtcatcc gccgctcaga gatccctcag
     1201 cagccaacgc accgagcgtt tctgcaactc gacatattgc gggttccaca tggcgtgaat
     1261 ggtgtggccg acggcggtga acaccatccg gcccttgccg taatcatagg cccaaccggc
     1321 gggcgatttg gtgccgcgcc cttcataggt cagcccgtcg agattttccg actccaggat
     1381 cacataacgc gggtccttgt cgtaatcgac ataatgctgc tcgtcattga cgatgaaggg
     1441 cttcatgccg gcggtgatgg gatgggcatt ggcggtggca tggacctgga aggggcgcag
     1501 tggcggatgc ccgaaatagg cgccgcccat tacctcgcgg taattcttcg acgacagcga
     1561 gatatggctg gaattgtgca ggggatagaa gccaccgccc gccgcgacga aattcttgat
     1621 cgccaggccc tgttcttccg tcatccacat caccgacttg gccgcgggga agtccccggc
     1681 attttccaga tcactttcat aggcggtgta ggcgtcgggc ccggaatagc cgcccggcca
     1741 gatcatgccg tcgcgcaaga tcagcagcag ctgatagggc ttcagcgatg ccgccgacag
     1801 gccggcatag tccatcgtat agtcgatggc gatatccagt tcgtggaaca ccttgtccag
     1861 gctgacccgg atgtaatcgg gattgtgata gcggtcgccg atcagcgcca aggcgcgggg
     1921 ctttgccgcc gatgcggccc aggccggcat cgcgcctgcc gcggccacgc cacccaccag
     1981 catacgacgt gaaatttctg gttggaacaa tttcagcacg agtttccctc cgttgttatt
     2041 atttgatcac cccctgctgc aatgagtagt cccttgcatg gtcagagtgc ctgaaagcta
     2101 tagacggggc cccgctcccc cgccaatatg ttgcatataa aatacagcgc ggggagggac
     2161 gacaatgtcc ccgaaagaca taagaaggat agggcaggat gccgaaaacc ggaaatcgcg
     2221 ggcgctggct tgcagccttc gcggtggtgg ccatggcggc gacaagcttg gcactggccg
     2281 gttgcgacgg caagcctgag ggaacctaca gccatagtgg cggcgtggtg gatggctggc
     2341 cggtctgggg ccacggttct gcgggccagc gctacagcgc caacacccag atcacccctg
     2401 aaaatgtgaa agatctgaag cttgcctgga cctatcgcac cggcgatctg tccaagccgg
     2461 gtgaacatgc cgacctcgcc ttcgaagcga cacccatcct ggccaacaag acgctttatc
     2521 tctgctcgcc gcgcagccgc atcatcgcgc tggatcccac caccggcaaa cagaagtgga
     2581 tgttcgacgc ccatccccat acggcgggcg cgaccgtcat cgtctgccgc ggcgtatcct
     2641 attggaagga cagccaggca acatccaata aggaatgctc acagcgcatt ttcggcggca
     2701 ccatcgacgg caagatgtgg gcgctggacg ccgataccgg caagccgtgc gagggtttcg
     2761 gcgatcacgg caaggtggac ttgcatcagg gactcggctt tatcgaaaag cccggcctgt
     2821 ggggcatctc ctcggcgccc gccatcgtcg gcgacatggt gatcaccggc tccaagatca
     2881 tcgatttcca caataccgac atgccgggcg gcgtggtgcg cgccctggat gcccgcagcg
     2941 gcaaggtggt gtgggccttc accgcggcgc cgccggacat ggaccagggc gacgcagcgc
     3001 attatccccg cagcgcgccg aatgtctggg cgccgatgtc ggtggatgtg gcgcgcaagc
     3061 tgatcttcct gcccaccggc acgccacaag tggattctta tatcggcaag gccgactggg
     3121 attactatgg cagttcggtg gtggcactga acaccgatac cggcaagccg gtgtggcact
     3181 accagttcgt gcacaaggac atctgggact atgacacccc gtcccagccg ctgctgttcg
     3241 attatcacgc gccggacggc aagatcgtgc ccgcgctcgc ccaggccacc aagatgggca
     3301 ctatctttgt cctcaatcgc gaaaccggcg tgccgatctt cccggtgaag gagacgccgg
     3361 tctccaccgg cggcctgcaa aaaggcctgt cacccaccca gccgattccc atcctgcccg
     3421 agcatgaagt ccgaatcacc aaattccagg actctgacat cttcggtttc gcgctggtgg
     3481 acaaatggga ttgcctcaag cgtttccacg ccctggtcaa tgacggtatt ttcacaccct
     3541 attatgcgaa acccagtgtg gattacccca tcagcctggg cggcatggat tggggcgggc
     3601 tgactttcga tccccagcgc aatctgctgg tggtcaattc caacaatatc ctgggggcgc
     3661 atcacctggc gccgcacaag ggctctggcg gctattcacc gctgatcggc acgccctatc
     3721 gtcaggtcta tgacaatatg atgtcgatgt tcagcgcgcc ctgtaacgcg ccgccctggg
     3781 gccgtctgac cggcatcgac atgaccagcg gcaagaaagt gtgggaagtg ccattgggca
     3841 ccacccgcga tgaggcgcct tggccgctat ggtttcctct gggcgtgccc aaccagggcg
     3901 gcgctatcac cacggcgtcg ggcctgacct tcatcgccgc caccaccgac cgctatttcc
     3961 gggccttcga gaccgcgacc ggcaaggaat tgtggcgggt gtccttgccg gcagcgggcc
     4021 agtccatgcc catgacctac cggctggatg cggagggcaa acagtatgtg gtgctgtcgg
     4081 cgggcggcca ttccgccctt cagaacaaac agggcgatta cgtcatcgcc tatgccttgc
     4141 cgtaggagcg atgatggaaa atcttaatca cactgtttcc caggcgctgc aaccgagcgg
     4201 cccgccgcct accttgcgcg cccatgtggt caagatgctt tcggccggga tcctgtcggg
     4261 taagtacaag cccggcgacc ggctcaacga aagccagatc gcgcgggaac tgagcatcag
     4321 ccgcattccg gtgcgcgaag ccctgtcaca g
//
LOCUS       DATMDK010000022         3237 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1841034,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000022 DATMDK010000000
VERSION     DATMDK010000022.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3237)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3237)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3237
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1841034"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..786)
                     /locus_tag="VNN98_00445"
     CDS             complement(<1..786)
                     /locus_tag="VNN98_00445"
                     /inference="COORDINATES: protein motif:HMM:NF012432.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lyase family protein"
                     /protein_id="HWM60581.1"
                     /translation="MSKTRTETDTFGPIEVDASRYWGAQAQRSLGNFKIGWEKQPAAI
                     VRALGIVKQAAAQTNMALGGLDKTIGDTIVKAAQEVIDGKLDEHFPLMVWQTGSGTQS
                     NMNANEVISNRAIEMLGGVMGSKKPVHPNDHVNMSQSSNDTYPTAMHIACAEEIEHRL
                     LPALKHLHTALAAKVTAWADIIKIGRTHTQDATPITLGQEFSGYAAQVSNGIARIEQT
                     MPKLMELAQGGTAVGTGLNAPVGFDKMVAERIARITGMAFTTAP"
     gene            complement(819..1355)
                     /locus_tag="VNN98_00450"
     CDS             complement(819..1355)
                     /locus_tag="VNN98_00450"
                     /inference="COORDINATES: protein motif:HMM:NF016286.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ClpXP protease specificity-enhancing factor
                     SspB"
                     /protein_id="HWM60582.1"
                     /translation="MAKDFIGYQALTDSALRGVVRDALRRIEKSGLIGAHHFYLTFKT
                     HAEGVDIPEFLKEQYPDEMTIIIQHQYWALKVKDDYFEVTLTFKKLPAPLHIPFAALT
                     AFFDPGVQFGLQFRAEGDAAKPATGPVMVPNSPQDIGEGEAPEPVAAKPAPVSEKSSE
                     KTAEKPGEVVSLDSFRKK"
     gene            1511..2563
                     /locus_tag="VNN98_00455"
     CDS             1511..2563
                     /locus_tag="VNN98_00455"
                     /inference="COORDINATES: protein motif:HMM:NF012744.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HWM60583.1"
                     /translation="MKIAQIAPLVESVPPTLYGGTERVVSWLTEELVARGHEVTLFAS
                     GDSVTAARLEPIVPRSLRLDGIHNSTPYNIIMLDRVAARVDEFDVLHFHIDFFHYPLF
                     RGMANKTLTTLHGRQDLPELPALYRAFPHMPLASISNDQRRPVPPVNWMGTVYHGLPE
                     SLLREGRGDGGYLAFLGRICADKGPLDAIEIARRAGMKLKMAAKVDPADQVYFDEQVK
                     PVLDASPHVEFIGEINDSQKQDFLGRARALLFPICWPEPFGLVMIEAMACGTPVIAFK
                     AGSVPEVMEDGLTGFVVDDIEGAVAAVDKLDRLFRPAIRARFQERFSAGAMARDYMKI
                     YQQLAASDGAASLAAE"
     gene            2583..>3237
                     /locus_tag="VNN98_00460"
     CDS             2583..>3237
                     /locus_tag="VNN98_00460"
                     /inference="COORDINATES: protein motif:HMM:NF026092.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycogen debranching N-terminal
                     domain-containing protein"
                     /protein_id="HWM60584.1"
                     /translation="MEAKTLPGSPDDISTFYIQATESIQQRWPRTLKQGDTFGLFDAL
                     GDCVAPGLTPGGIFHNDTRYLSGVQLLIDGQKPLLLSSAVENDNVVLTVDLSNPDIYQ
                     GSTIVLPREILHIRRSKFLWQGSCHERIAIHNFDTKPQKCWLTINFAADFADLFEIRG
                     IQRPARGATSCAVIGGAKSIFRYVGLDKVERRSEICFDPPPKQLSKSQALYALELEPQ
                     "
BASE COUNT          580 a          978 c         1022 g          657 t
ORIGIN      
        1 gggcgcggtg gtgaaagcca tgccggtgat cctggcgatg cgttccgcca ccatcttgtc
       61 gaagccgacg ggcgcgttca ggccggtacc caccgcggtg ccgccctgcg ccagctccat
      121 cagcttgggc atggtctgtt cgatgcgggc aatgccgttg gaaacctgcg cggcatagcc
      181 ggaaaattcc tggcccaagg tgatcggcgt ggcgtcctgg gtatgggtgc ggccgatttt
      241 gataatgtcg gcccaggcgg tgaccttggc ggccagcgcg gtgtgcagat gcttgagcgc
      301 gggcagcagc cggtgctcga tctcctcggc gcaggcgatg tgcatggcgg tgggataggt
      361 gtcgttggac gactggctca tattgacgtg atcgttggga tggaccggct tcttggagcc
      421 catcaccccg cccagcattt cgatggcgcg attggagatc acttcattgg cgttcatgtt
      481 ggactgggtg cccgagccgg tctgccacac catcagcggg aaatgctcgt ccagcttgcc
      541 gtcgatcact tcctgggccg ccttgacgat ggtgtcgcca atggtcttgt ccaggccgcc
      601 cagcgccatg ttggtctgcg ccgccgcctg cttgacgatg cccagggcgc gcacgatagc
      661 cgcgggctgt ttttcccaac cgatcttgaa attgcccaag gagcgctggg cctgcgcccc
      721 ccaatagcgg ctggcgtcaa cctctatggg tccgaacgtg tcggtttcgg tgcgggtctt
      781 gctcatgggg gaggctttcg aattgggttt gcggccagtc acttcttgcg aaatgaatcc
      841 aggctgacca cttcgccggg tttttccgcg gtcttttcac tggacttttc acttacaggg
      901 gcaggcttgg ccgccaccgg ctcgggtgct tcgccctcgc cgatgtcctg cgggctgttg
      961 ggcaccatca ccggcccggt ggccggcttg gcggcatcgc cctcggcgcg gaattgcagg
     1021 ccgaactgca cgccggggtc gaaaaaggcg gtcagggcag cgaacggaat atgcagcggc
     1081 gccggcagct tcttgaaggt caaggtcacc tcgaaataat cgtccttcac cttcagcgcc
     1141 caatattggt gctggatgat gatggtcatc tcgtcgggat actgctcctt caggaactcc
     1201 ggaatgtcca caccctcggc atgggtcttg aaggtcaggt agaaatgatg ggcgccgatc
     1261 aggccggact tttcgatgcg ccgcagcgcg tcacgcacca cgccgcgcag cgccgagtcg
     1321 gtaagagcct gatagccgat aaagtctttt gccatagagt ttcgagacta agcgccgggc
     1381 cttgggagtc aatcgtgccc ccgtggggac ggcccttccg aaggccatta taacgcaaat
     1441 gcgaagaaaa aaaggaaccc aaaggacaga aacaccgttg tgaataagcc gtggcgaggg
     1501 tcctgatatc gtgaaaattg cgcaaatcgc ccccctggtg gaaagcgtcc cgcccactct
     1561 gtatggcggg accgaacggg tagtgtcctg gctgaccgaa gagctggtgg cacgcggcca
     1621 tgaggtgact ttgttcgcct ccggtgattc tgtgaccgcc gcccggctgg agcccatcgt
     1681 gccgcgctcc ttgcggctgg acggcatcca caattccacg ccctataaca tcatcatgct
     1741 ggaccgggtc gctgcccggg tggacgaatt cgatgtgctg catttccaca tcgacttctt
     1801 ccattacccg ctatttcgcg gcatggcgaa caagaccttg accaccctgc atggccgcca
     1861 ggacctgccc gaactgcccg ctttataccg cgcctttccg cacatgccgc tggcatccat
     1921 ttccaatgat cagcgcaggc ccgtgccgcc ggtgaactgg atgggcacgg tctatcacgg
     1981 cctgcccgaa agcctgttgc gggaaggccg gggcgatggc ggctatcttg cctttctggg
     2041 ccgcatctgc gccgacaagg ggccgctgga cgccatcgag atcgcccgcc gtgccggcat
     2101 gaaactgaaa atggcggcca aggtcgaccc ggccgatcaa gtttatttcg acgaacaggt
     2161 gaagccggtg ctggacgcca gcccgcatgt cgaattcatc ggcgagatca atgacagcca
     2221 gaagcaggat ttcctgggcc gggcgcgggc gctgctgttt ccgatttgct ggccggaacc
     2281 gttcggcttg gtgatgatcg aggccatggc ctgcggtacg ccggtgatcg ccttcaaggc
     2341 aggttcggtg ccggaggtta tggaagacgg gctgaccggc tttgtggtgg atgacatcga
     2401 aggggccgtg gcggcggtgg acaagctgga ccggttgttc cgccccgcca tccgcgcgcg
     2461 cttccaggaa cgcttcagcg ccggcgccat ggcgcgggac tatatgaaaa tctatcagca
     2521 actggcggca tcggacggcg cggcttcact ggccgcggaa tgatttgaac gcgagggacg
     2581 ttatggaggc caaaaccctc ccgggctcgc ctgacgatat ttcgactttc tatattcagg
     2641 cgacggaatc gatacagcag cgctggccgc gcacgctcaa acagggcgat accttcggcc
     2701 tgttcgatgc gctgggcgat tgcgtggcgc cgggcctgac ccccggcggc atcttccaca
     2761 acgatacgcg ctatctttcc ggcgtgcagc tcttgatcga cggccagaag ccgctgctgc
     2821 tgtccagcgc ggtggagaat gacaatgtcg tgctcaccgt ggacctgtcc aatcccgaca
     2881 tctaccaggg cagcaccatc gtgctgccgc gcgagatttt gcacatacgg cgttccaaat
     2941 ttctttggca gggtagctgc catgaacgca tcgccatcca caatttcgat accaagccgc
     3001 agaaatgctg gttgacgatc aatttcgccg ccgacttcgc cgacctgttc gagattcgcg
     3061 gtatccagcg gcctgctcgc ggcgccacga gctgtgcggt gatcggcggc gccaagagta
     3121 ttttccgcta tgtcggcctg gacaaagtgg agcggcgcag cgaaatctgt ttcgacccgc
     3181 cccccaagca gctttccaaa agccaggcgc tgtacgcgct ggagctggag ccgcaga
//
LOCUS       DATMDK010000023         6314 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1612094,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000023 DATMDK010000000
VERSION     DATMDK010000023.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 6314)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6314)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6314
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1612094"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(74..688)
                     /locus_tag="VNN98_00465"
     CDS             complement(74..688)
                     /locus_tag="VNN98_00465"
                     /inference="COORDINATES: protein motif:HMM:NF014667.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031966 - mitochondrial membrane
                     [Evidence IEA];
                     GO_process: GO:0033617 - mitochondrial cytochrome c
                     oxidase assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SCO family protein"
                     /protein_id="HWM60585.1"
                     /translation="MLRNKQALIPYLLLAAALAGGLLWHESETVPGLGRSVITGQADV
                     GGPFRLTDQNGKAVSDTDFRGRYMLVYFGYSFCPDVCPTTLSVMAQALDRLGGESRRV
                     TPVFITIDPERDTPQVLGDYMKAFGPNFVGLTGSAAAIKDVEKKYRVYAVKKPLDSSK
                     GGGGGYGMDHSSVMYLMGPDGKMISFYDEAISPDDLAKDLRQKI"
     gene            731..2110
                     /locus_tag="VNN98_00470"
     CDS             731..2110
                     /locus_tag="VNN98_00470"
                     /inference="COORDINATES: protein motif:HMM:NF033792.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ActS/PrrB/RegB family redox-sensitive histidine
                     kinase"
                     /protein_id="HWM60586.1"
                     /translation="MARKEVGRGFAQGASAGRVRLRTLSNLRWLAVAGQSAALFLVYF
                     ALGYSLPILYCAIAIAVSAALNVMLAVRYPPTHRLTNREATFYLAFDVLQLAALLYLT
                     GGITNPFALMFVAPVVIAAATLNLGNVLILAGIAFASVSLIAIIHRPLPWPADEALLL
                     PQLYQAGIWTALVIGIGFTSVYAWRIASESARMSAGLAATQLALSREHRLAALGALAT
                     AAAHELGTPLGTIAVVARELERSLPENSSEVEDVRLLREQAERCRTIIARLANPEEAM
                     LGATARLPLGAFLDDIANIHRGEDLEIRVTVTPPPSKGKDDSHAPEVWRAPELLHGLG
                     NIIENAADFAHSLVAVTAGWDDAFLSIAVADDGPGFAPEIFDILGEPYITSRPGHHAL
                     GDNEMGPQGSLDEHEGMGLGFFIAKILLEQTGGAVKAENPPGGGALVSIRWARGVIDG
                     PQPPAQTET"
     gene            2158..2691
                     /locus_tag="VNN98_00475"
     CDS             2158..2691
                     /locus_tag="VNN98_00475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008035437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ActR/PrrA/RegA family redox response regulator
                     transcription factor"
                     /protein_id="HWM60587.1"
                     /translation="MTDEDKTLLLVEDDRPLRERLARAMEARGFAVTQAESVAEGKAR
                     AKEAPPAYAVVDLKLDDGNGLDVVETLHTIRPESRVVVLTGFGNIATAVAAVKYGAID
                     YLPKPADADDILAALMAVPGSKPKPPENPMSADRVRWEHIQRVYELCGHNVSETARRL
                     NMHRRTLQRILAKRSPR"
     gene            complement(2849..3214)
                     /locus_tag="VNN98_00480"
     CDS             complement(2849..3214)
                     /locus_tag="VNN98_00480"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM60588.1"
                     /translation="MSGTDERPYFNRPSVFIHDQFLTKVHEKEDAMVLRVSSMEMRDM
                     MLEAEPKLFYITDHYRNFPFVLARLKTLTQKVLKEILVGRATQLALTAEKAAKRKKPL
                     KKVGAKKKLAKKSAKRVRR"
     gene            complement(3237..3728)
                     /locus_tag="VNN98_00485"
     CDS             complement(3237..3728)
                     /locus_tag="VNN98_00485"
                     /inference="COORDINATES: protein motif:HMM:NF018070.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MmcB family DNA repair protein"
                     /protein_id="HWM60589.1"
                     /translation="MESGNMISSSTAAEVARGVSRLLLAEGYSPILEFTLPNGRRLDV
                     AAIGPGGEMLGVEIKVALADLRGDGKWPEYLDYCDLFYFAIPPDFPEEHVPQQTGLIV
                     ADRYGGSIVKEAEAQTLHASRRKAVTVSFARCAAERLSRTLDTIAVSQIPNLVLPDAA
                     DKN"
     gene            complement(3831..4418)
                     /gene="hisB"
                     /locus_tag="VNN98_00490"
     CDS             complement(3831..4418)
                     /gene="hisB"
                     /locus_tag="VNN98_00490"
                     /EC_number="4.2.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018054362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004424 - imidazoleglycerol-phosphate
                     dehydratase activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="imidazoleglycerol-phosphate dehydratase HisB"
                     /protein_id="HWM60590.1"
                     /translation="MRTATVERKTRETEIAVSLDLDGTGDSDIDTGIGFLDHMLESFS
                     RHSMIDLKVRATGDLHVDYHHTTEDTAIVIGQAVKQALGDFSGITRFGAALIPMDEAL
                     TRVALDMSNRPYLIWKVTIPKPKLGEMDTELFKEWFQAFAQNAGVCLHIENLYADNSH
                     HIVETCFKGLARALRQAITPDERLDGASPSSKGSL"
     gene            4569..5756
                     /gene="metK"
                     /locus_tag="VNN98_00495"
     CDS             4569..5756
                     /gene="metK"
                     /locus_tag="VNN98_00495"
                     /EC_number="2.5.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005246700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004478 - methionine adenosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006556 - S-adenosylmethionine biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methionine adenosyltransferase"
                     /protein_id="HWM60591.1"
                     /translation="MRSDYLFTSESVSEGHPDKVSDRISDEVVDLFFREGPKDGMSPW
                     DIRAACETLCTTNRVVIAGETRGPKSVGKAQVEEVARQAIRAIGYEQDGFHWKTAQVE
                     ILLHPQSAHIAQGVDAGGNKDEGAGDQGIMFGYACRETPALMPAPLYYSHKILKLLAD
                     ARHGGKEPTLQPDAKSQVTLRYVGGKPVEATQIVLSTQHSSEDQTSADIRKIVEPYIR
                     QALPKEWINDKTVWHINPTGSFVIGGPDGDCGLTGRKIIVDTYGGAAPHGGGAFSGKD
                     STKVDRSAAYAARYLAKNVVASGLADRCTIQLAYAIGVAEPLSVYVDTHGTGKVGEAR
                     LELILPQLMNLKPRGIREHLDLNKPIFARTAAYGHFGREPDSEGGFSWEKTDLADRIK
                     SAV"
     gene            5876..>6314
                     /locus_tag="VNN98_00500"
     CDS             5876..>6314
                     /locus_tag="VNN98_00500"
                     /inference="COORDINATES: protein motif:HMM:NF014447.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM60592.1"
                     /translation="MSDEIPHPDRNRRKLYGRRKGPKLSARQAGLRRTLLGELAYVLG
                     GDPLVQFPNSVREVWLEVGFGAGEHLIWQAAQHPQVGMIGAESYEMGVAKLLTKLEES
                     PLNTVRLYEGDGREIIEALPVASLGRFFLLFPDPWPKTRHHKRR"
BASE COUNT         1159 a         1985 c         1958 g         1212 t
ORIGIN      
        1 ctccgctaac ccaatgattt ttcttcctct ccctcaaggg gagagggaaa agaagacgct
       61 gcggacgtgg tggctaaatc ttctgtcgca aatctttcgc cagatcatcc ggcgagatcg
      121 cctcgtcata gaagctgatc atcttgccgt ccggtcccat caggtacatc acggacgagt
      181 gatccatgcc gtaaccgccc ccacctccct tagaggagtc cagcggcttc ttcaccgcat
      241 agacgcgata cttcttctcg acatccttga tcgcggcggc gctgccggtg aggcccacga
      301 aattggggcc gaaggctttc atatagtcgc ccagcacctg gggcgtgtcg cgctcgggat
      361 cgatggtgat gaaaaccggc gtcacccgcc ggctttcacc gcccagtctg tccaaggcct
      421 gcgccataac gctcagagtg gtggggcaga catcgggaca aaagctgtag ccgaaataga
      481 ccagcatata gcggccgcga aaatcggtgt cgctcacggc cttgccgttc tgatcggtga
      541 ggcgaaaggg tccgccgaca tcggcctggc cggtgatgac actccggccc agccccggca
      601 ccgtctcgct ttcatgccag agcagcccgc cggccagcgc cgcggccagc agcagatagg
      661 ggatcagggc ttgcttgttg cgcaacatcg gcaatgctct aatccctctg tccgcatcag
      721 ggaagtgaca ttggcgcgca aggaggtggg aagaggcttc gcccaaggcg ccagcgccgg
      781 gcgggtgcgg ctgcgcaccc tgtcgaacct gcgctggctg gcggtggcgg gccagtcggc
      841 ggccctgttc ctggtctatt tcgcactcgg ttattcgctt cccatcctct attgcgccat
      901 cgccatcgcg gtcagcgccg cgctgaatgt gatgctggcg gtgcgctacc ccccgaccca
      961 ccggctgacc aaccgcgaag ccaccttcta tctcgccttc gacgtgctgc agctggcggc
     1021 gctgttgtac ctgaccggcg gcatcaccaa tccctttgcc ctgatgttcg tggccccggt
     1081 ggtgatcgcc gccgccacgc tcaatctggg taatgtgttg atcctggcgg gcatcgcctt
     1141 cgcctcggta tcgctgatcg ccattatcca tcgcccgctg ccctggccgg ccgacgaggc
     1201 gctgttgctg ccgcaactct atcaggccgg tatctggacg gcgctggtga tcggcatcgg
     1261 cttcacctcg gtctatgcct ggcgcatcgc atcggaatcg gcgcggatgt cggcgggcct
     1321 ggccgcgacc cagcttgctt tgtcgcgcga acatcgcctg gcggcgctgg gtgcgctggc
     1381 cacggcggcg gcgcacgaac tgggcacgcc cttggggacc atcgcggtgg tggcgcggga
     1441 gttggagcgg tcgctgccgg aaaattcttc ggaagtggaa gatgtgcgcc tgctgcgtga
     1501 gcaggccgag cgttgccgta ccatcatcgc ccgcctcgcc aatcccgaag aagcgatgtt
     1561 gggcgccacc gcccgcctgc cgctgggcgc gttcctggac gacatcgcca acatccaccg
     1621 gggcgaagat ctggagatcc gcgtcaccgt tacgccgccc cccagcaagg gaaaagacga
     1681 cagccacgcg cccgaggtgt ggcgcgcccc cgaactgctg catgggcttg gcaacattat
     1741 cgagaatgct gccgattttg ctcattccct ggtggcggtg acggccggct gggacgatgc
     1801 cttcctctct atcgcggtgg ccgatgacgg ccccggcttt gcgccggaaa tcttcgatat
     1861 cttgggcgag ccctacatca cctcgcgccc gggccatcac gccctgggcg acaatgagat
     1921 gggcccgcaa ggctccctgg acgagcatga aggcatgggg ttggggttct tcattgccaa
     1981 gattctgctg gaacagaccg gcggcgcggt taaggctgaa aatccgcccg ggggcggggc
     2041 gctggtttct atccgctggg cgcggggcgt gatcgacggc ccccagcccc cggcgcaaac
     2101 cgagacctag gccgaattgt ttgacgggtt gtcaaaagga tactaaagcg ccccctcatg
     2161 acagacgaag ataagaccct gctcctggtg gaggacgacc gccccctgcg cgagcgcctg
     2221 gcccgcgcca tggaagcgcg cggctttgcc gtcacccagg cggagtcagt ggccgagggc
     2281 aaagcccgcg ccaaggaagc gccgcccgcc tatgccgtgg tcgacctcaa gctggacgac
     2341 ggcaatggac tggacgtggt ggagaccttg cacaccattc gtcccgaaag ccgggtggtg
     2401 gtgctgaccg gcttcggcaa tatcgccacc gccgtggcgg ccgtgaaata tggcgccatc
     2461 gattacctgc ccaagcccgc cgatgccgat gatattctgg cggcgctgat ggcggtgccg
     2521 ggctccaagc ccaagccgcc ggaaaacccc atgtcggccg accgggtgcg ctgggaacat
     2581 atccagcggg tctatgaatt gtgcgggcac aatgtgtcgg agacggcgcg cagactgaat
     2641 atgcatcgcc gtacattgca gcggattttg gcgaagcgca gcccgcgcta gagccgtttc
     2701 gggttagggt gattcccgtc aaaaaatcgt catcgcccgc tttatgcggg cgatccaatt
     2761 tgtttcagca agaaaaatgg atcacccgga cccttcgcaa aagctcagga ccgggtgatg
     2821 acggaattat attcaaactg aaatgactct agcgcctgac ccttttcgcc gattttttgg
     2881 cgagcttctt tttcgcgcca acttttttca acggcttctt gcgcttggct gccttctccg
     2941 ccgtcagcgc cagctgcgtc gcgcggccca ccagaatttc cttcagcacc ttttgcgtca
     3001 gcgtcttcag ccgcgccagc acaaagggga agttgcggta atggtcggtg atgtagaaca
     3061 gcttgggctc ggcctccagc atcatgtcgc gcatttccat ggaggagacg cgcagcacca
     3121 tggcgtcttc cttctcatgc accttggtga ggaactggtc gtgaatgaag accgagggcc
     3181 ggttgaaata gggccgttcg tccgtgccgc tcaacgacag tgcaattttg cgggcttcag
     3241 ttcttgtcag cggcatcggg cagcaccaga ttgggaattt gcgaaacggc gatggtatcc
     3301 aaggtgcgtg acagccgctc ggcggcgcag cgcgcgaagc tgacggtcac cgccttgcgg
     3361 cggctggcat gcaatgtctg ggcttcggct tccttgacga tggagccgcc atagcggtcg
     3421 gccacgatca gtccggtttg ctgcggcaca tgctcctcgg gaaaatccgg cgggatggcg
     3481 aaatagaaca ggtcgcaata atccagatat tcgggccatt tgccatcgcc gcgcaaatcg
     3541 gccaacgcca ccttgatctc cacccccagc atttcgccgc cggggccgat ggcagccaca
     3601 tccagccgcc gcccattggg cagggtgaat tccagaatgg gcgagtagcc ttccgccaat
     3661 agcagacggc tcaccccgcg cgcgacttcg gcggcggtgg acgaactgat catattacca
     3721 ctctccatgg gcggccttga gccgcccatc cagagtcaaa ggctccatct cagttttgaa
     3781 gccctggatg gccgggtcaa gcccggccat ggtgaggggt gggacagggg ttacaggctg
     3841 cccttgctgg acggagaagc tccatccagc cgttcatccg gcgtgatcgc ctgccgcaac
     3901 gcccgcgcca gacccttgaa gcaggtctca acgatatgat ggctgttgtc ggcatagaga
     3961 ttttcgatat gcaggcacac cccggcattc tgggcgaagg cctggaacca ttccttgaac
     4021 agttcggtgt ccatctcccc cagcttgggc ttggggatcg tcaccttcca gatcaggtaa
     4081 ggccggttgg acatatccag cgccacgcgt gtcagcgcct cgtccatggg gatcagggcg
     4141 gcgccgaaac gggtgatgcc ggaaaaatcg cccagcgcct gtttcaccgc ttggccgatg
     4201 acgatggcag tgtcctcggt ggtgtggtga tagtccacat gcaggtcgcc ggtggcgcgc
     4261 accttcaggt cgatcatgga atggcgcgag aagctctcca gcatatggtc cagaaagccg
     4321 atgccggtat cgatgtcgct gtcgccggtc ccgtccaggt cgagggagac ggcgatctcg
     4381 gtctcgcggg tcttgcgttc aacggtcgca gtgcgcatgg gcggtccttg gttcggggct
     4441 gtatagcagg gggttcccct agggtgaatc ccattctact gcctagcata tgtcatattt
     4501 gacatatccg gttgaccccc cggccaaacc ctgtaaagag atgccccgtc caaagttcaa
     4561 gggtcaccat gcgctccgac tatctgttca cttccgaaag cgtttcggaa ggccatcccg
     4621 acaaagtgag tgaccgcatc tccgatgagg tggtggacct gtttttccgc gaaggcccca
     4681 aggatggcat gagcccctgg gacatccgcg ctgcctgcga gaccctttgc accaccaacc
     4741 gcgtggtgat cgcgggcgaa acccgcggcc ccaaatccgt cggcaaggcc caggtggagg
     4801 aggtcgcgcg tcaggcgatc agggccatcg gctatgagca ggacggcttc cactggaaga
     4861 ccgcgcaagt tgaaatcttg ctgcaccctc aatcggccca tatcgcccag ggtgtggatg
     4921 ccggcggcaa caaggacgag ggcgcgggcg accagggcat catgttcggc tatgcctgcc
     4981 gcgaaacccc ggcgctgatg ccggcgccgc tctattacag ccataaaatc ctgaaattgc
     5041 tggccgatgc gcgccacggc ggcaaggagc cgaccctgca gcccgacgcc aaatcgcagg
     5101 tcaccttgcg ctatgtcggc ggcaagccgg tggaagccac ccagatcgtg ctgtccaccc
     5161 agcattccag cgaagaccag accagcgccg acattcgcaa gatcgtcgag ccttatattc
     5221 gtcaagcgct ccccaaagag tggatcaacg acaagacggt gtggcacatc aatcccaccg
     5281 gctccttcgt gatcggcggt ccggatggcg actgcggcct caccgggcgc aagatcattg
     5341 tggacaccta cggcggcgcg gccccgcatg gcggcggcgc gttcagcggc aaggattcca
     5401 ccaaggtgga ccgttcggcg gcctatgccg cgcgctatct ggccaagaat gtggtggcct
     5461 cgggcctggc ggatcgctgc accatccagc tggcctatgc catcggcgtg gccgagccgc
     5521 tgtcggtcta tgtcgacacc catggcaccg gcaaagtggg cgaagccagg ctggaactga
     5581 tcctgcccca gctgatgaac ctgaagccgc gtggcatccg cgagcatctg gacctcaaca
     5641 agcccatctt cgcccgcacc gcggcctatg gtcatttcgg ccgcgagccc gacagcgagg
     5701 gtgggttttc gtgggagaaa actgatctgg cggatcggat taagtccgcg gtttaattct
     5761 tacccccctc tgtcacagct cggatcggct ccgccgacat ctcgctgcga catcttcccc
     5821 ccgcagttgc ttcgcaagcg ggggggagaa agccggtgtt ttcgtgaggg tccccgtgtc
     5881 cgacgaaatc ccgcaccccg accggaatcg ccgaaaactc tatggccggc gcaagggtcc
     5941 caaattgtcc gcccggcagg cgggactgcg ccgaacgctg ttgggcgagc tggcctatgt
     6001 cctgggcggc gaccccttgg tgcagttccc gaatagtgtt cgggaggtct ggcttgaggt
     6061 cggttttggg gcaggagagc atttgatctg gcaggccgca cagcatcccc aggtgggaat
     6121 gatcggcgcc gaatcctatg agatgggtgt cgccaagctt ctaacaaagc ttgaagaatc
     6181 tccgctaaac actgttcgcc tttatgaggg agacgggcgg gagatcatcg aagccctgcc
     6241 ggttgccagc ctgggccgct tcttcctgct gtttcccgat ccctggccca agacccgcca
     6301 tcataaacgg cgtt
//
LOCUS       DATMDK010000024         3931 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_474434,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000024 DATMDK010000000
VERSION     DATMDK010000024.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3931)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3931)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3931
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_474434"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..238
                     /locus_tag="VNN98_00505"
     CDS             <1..238
                     /locus_tag="VNN98_00505"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HWM60593.1"
                     /translation="HRHRLTEPYVTTRAKGTGLGLAIVRKIMEDHGGDISLADVEGGE
                     GAEVTLTFPFAQKNLKAQESKGPEDEQKRIADRV"
     gene            207..1598
                     /locus_tag="VNN98_00510"
     CDS             207..1598
                     /locus_tag="VNN98_00510"
                     /inference="COORDINATES: protein motif:HMM:NF025885.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-54 dependent transcriptional regulator"
                     /protein_id="HWM60594.1"
                     /translation="MSKNGSLIASEILIVDDEEDIRDLIAGILHDEGYTTRVAGDSES
                     ALAAIRARRPQLVVLDIWLQGSKLDGIEILETIRREQPELPVVMISGHGTIETAVASI
                     KKGAYDFVEKPFKADRLLMVVERALESARLKREVQELKLKAGDEGELVGHSHTIAQLR
                     VLIDKIAPTNSRVLIAGPAGSGKEVAARLIHARSRRAGNAFVAINCATMEPDRLEAEL
                     FGIESSDGPRKTGLFELAHNGTLYLDEVADMPLETQGKILRVLIDQTFTRVGGQVRVQ
                     VDARVICSTTRDLRAETEAGRFREDLYHRLNVVPVRIPSLAERRDDIPVLVSHFMKRL
                     SAAGGLPMRQIGDDAMAVLQTHGWPGNVRQLRNIVERLLILASDDVTEAVTADLLPTD
                     LGAGGGKSGDLVISLPLREAREIFERDYLMAQINRFGGNISRTAAFIGMERSALHRKL
                     KSLGVGSAQSFPN"
     gene            1758..2651
                     /locus_tag="VNN98_00515"
     CDS             1758..2651
                     /locus_tag="VNN98_00515"
                     /EC_number="2.6.1.21"
                     /inference="COORDINATES: protein motif:HMM:NF005209.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-amino-acid transaminase"
                     /protein_id="HWM60595.1"
                     /translation="MKKWSTSRAPAGRIAYVNGRYLPHGQAGVHIEDRALQLGDGIYE
                     VANVTDGKTLDEEPHLDRMERSLRELGMPMPMGRAALKLVMREMIARNRIPDGYLYMQ
                     VTRGAAKRDHIPPDDGARPTLIITMRGQDRAALAQRLEKGIAVSTQPDIRWGRRDIKT
                     VQLLPNLLAKQAARQTGAFEAWLVDADGYVTEGASTNAWIVDQSGTVITRDLSHAILP
                     GVTRRVMLDAMAQAQMKVVERKFTVAEALAAKEAFISSATGAAVPVVAIDGKSIGNGA
                     PGALTRRIRDLYAARPGPKNA"
     gene            2752..2991
                     /gene="hfq"
                     /locus_tag="VNN98_00520"
     CDS             2752..2991
                     /gene="hfq"
                     /locus_tag="VNN98_00520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007563033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA chaperone Hfq"
                     /protein_id="HWM60596.1"
                     /translation="MSDKQQNLQDTFLNAVRKSKAAVTIFLINGVKLQGNITWFDNFC
                     VLLRRDGQSQLVYKHAISTVMPMGPIQLQDEPAES"
     gene            3008..>3931
                     /gene="hflX"
                     /locus_tag="VNN98_00525"
     CDS             3008..>3931
                     /gene="hflX"
                     /locus_tag="VNN98_00525"
                     /inference="COORDINATES: protein motif:HMM:TIGR03156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase HflX"
                     /protein_id="HWM60597.1"
                     /translation="MARAFVIHVEPKNRSSAAKALRDASARLDEAVGLTAAIHLDVVV
                     AEIAPLARPVPGTLLGTGKVEEIAILAKDLEPDVIIVNAHLTPVQQRNLEKAWNSKVL
                     DRTAVILEIFGERAATREGRLQVELAHLNYQRSRLVRSWTHLERQRGGFGFLGGPGES
                     QIESDRRLIAERIVRIKAELEKVKRTRSLGRQARKKVPFPVVALVGYTNAGKSTLFNR
                     LTRANVLEADMPFATLDPTLRALALPHGTKAIMSDTVGFISDLPTTLVAAFRATLEEV
                     MEADVILHVRDVAHGEAEAQAKDVEHVLRELD"
BASE COUNT          786 a         1210 c         1281 g          654 t
ORIGIN      
        1 gcaccgccac cggctgaccg aaccctatgt caccacgcgc gccaagggca ccggcttggg
       61 gttggcgatc gtgcgcaaga ttatggaaga ccatggcggg gacatcagtc tcgccgacgt
      121 ggaaggcggg gaaggcgcgg aggtcacatt gaccttcccg ttcgcacaga aaaacctgaa
      181 agcccaggaa agcaaaggac cggaagatga gcaaaaacgg atcgctgatc gcgtctgaga
      241 tcctcatcgt ggatgatgag gaagacatcc gcgatctgat cgcgggcatc ctgcatgacg
      301 agggttatac cacccgcgtg gcgggcgatt ccgaatccgc cctggcggcg atccgcgccc
      361 gccgcccgca actggtggtg ctggacatct ggctgcaggg ctccaagctg gacggcatcg
      421 aaatcctgga aaccatcagg cgcgaacaac ccgagctgcc ggtggtgatg atcagcggcc
      481 atggcaccat cgagaccgcg gtcgcctcga tcaagaaggg cgcttacgat tttgtggaaa
      541 agccgttcaa ggcggaccgc ctattgatgg tggtggagcg ggcgctggaa tcggcgcggc
      601 tgaagcgcga agtgcaggaa ctgaaactca aggcgggcga cgagggcgag ctggtgggac
      661 attcccacac catcgcccag ctgcgcgtgt tgatcgacaa gatcgcgccc accaacagcc
      721 gcgtgttgat cgcgggtccg gcgggttcgg gcaaggaagt ggcggcacgg ctgatccatg
      781 cccgatcgcg ccgcgccggc aacgcctttg tcgccatcaa ttgcgccacc atggagccgg
      841 accggctgga agccgaactg ttcgggatcg aaagcagcga cggcccgcgc aagacggggc
      901 tgttcgagct tgcccataac ggcaccttgt atctcgacga agtggcggac atgccgctgg
      961 agacgcaagg caagattctg cgcgttctga tcgaccagac cttcacccgc gtcggtggcc
     1021 aggtccgggt gcaggtggat gcgcgggtga tctgctccac cacccgcgac ttgcgcgccg
     1081 agaccgaagc cgggcgcttc cgcgaagatc tttatcaccg cctgaacgtg gtgccggtgc
     1141 ggataccgtc gctggcggag cgccgcgacg acattcccgt gctggtgagc catttcatga
     1201 aacggctgtc ggcggcgggt ggcctgccca tgcgccagat cggcgacgac gccatggcgg
     1261 tgctgcagac ccatggctgg ccgggtaatg tccgtcagct gcgcaatatc gtggaacggc
     1321 tgctgatcct ggccagcgac gacgtcaccg aggcggttac cgccgacctc ttgcccaccg
     1381 acctgggggc aggcgggggc aagagcggcg atctggtgat ctcgctgccg ctgcgcgaag
     1441 cgcgcgagat cttcgagcgc gactacctga tggcccagat caaccgtttc ggcggcaata
     1501 tctctcgcac cgccgccttc atcggcatgg agcgttcggc gctgcatcgc aagctgaagt
     1561 cgctgggggt gggatcggcg cagagtttcc cgaattaacc tcgctgtcat ggcccgcaaa
     1621 tgcgggccac ccaggtgaga cgagtccgat cttgaataat aaaactgaga cttttccggc
     1681 gtggtcgcgc agatgtcatc tgggtggccc gcccaccttc caattagaag agggcgggcc
     1741 atgacaatga gtgttgcatg aaaaaatgga gcacaagccg tgcgcccgcc gggaggatcg
     1801 cttatgtcaa tggccgctac ctgccgcatg ggcaggccgg ggtgcatatc gaagaccgcg
     1861 ccctgcaact gggcgacggc atctatgaag tcgccaatgt gaccgatggc aagacgctgg
     1921 acgaggagcc gcacttggat cgcatggaac ggtccctgcg cgagttgggc atgcccatgc
     1981 cgatgggccg ggccgccttg aaactggtga tgcgggagat gattgcccgc aaccgcattc
     2041 ccgatggcta tctctacatg caggtgacgc gcggcgcggc caagcgcgac catattcccc
     2101 ccgatgatgg cgcgcgcccg accctgatca tcaccatgcg cgggcaggac agggcggcgc
     2161 tggcgcaacg gctggaaaag ggcatcgcgg tttccaccca acccgacatt cgctggggac
     2221 ggcgcgatat caagacggtg cagctgctcc ccaatcttct ggccaagcag gcggcgcggc
     2281 agaccggcgc ctttgaagcc tggctggtag atgcagacgg ctatgtcacc gaaggcgctt
     2341 cgaccaatgc ctggatcgtg gatcagagcg gcaccgtcat cacccgcgac ctgtcccacg
     2401 ccatcctgcc gggcgtcacc cgccgcgtca tgctggatgc gatggcgcag gcgcagatga
     2461 aggtggtgga acgcaaattc accgtcgccg aagccctggc cgcgaaggaa gccttcatct
     2521 cctcggccac gggagcagcg gtgccggtgg tggcgatcga cgggaaaagt atcggaaacg
     2581 gggcgcccgg agcgttaacg cgccggatcc gtgacctcta tgccgcacgg cccggcccaa
     2641 aaaacgcctg attccggcaa ttttttctct ttcgcaattg cagcatttcg ctagacttga
     2701 aaaccaaggt gccgcttgaa cccccaagcg gctgaaacaa tgggcgaacc catgagcgat
     2761 aaacaacaga accttcagga cacgttttta aacgcggtcc gcaagagcaa agctgccgtc
     2821 accatcttcc tgatcaatgg cgtcaaactt cagggcaata tcacctggtt cgacaatttc
     2881 tgcgtgttgc tgcgccggga tggccagtcc cagctggtct acaagcatgc catttccacg
     2941 gtgatgccga tgggcccgat ccagctgcag gacgaacccg ctgaaagctg aagcgcgtaa
     3001 gccgaagatg gcccgcgctt tcgttattca tgtcgagccc aagaaccgca gcagcgccgc
     3061 caaggccttg cgcgatgcca gcgcgcggct ggacgaagcg gtcgggctga ccgccgccat
     3121 ccatctggat gtggtggtgg ccgagatcgc gcccttggcc cggccggtac cggggacctt
     3181 gctgggcacc ggaaaggtgg aagagatcgc catcctggcc aaagacctgg agcctgacgt
     3241 catcatcgtc aatgcgcatc tgactccggt gcagcagcgc aacctggaga aggcgtggaa
     3301 cagcaaggtg ctggaccgca ccgccgtcat cctggaaatt ttcggcgagc gcgccgccac
     3361 aagggaaggg cgcctgcagg tggagttggc gcatctcaac tatcagcgct cacggctggt
     3421 gcgcagctgg acccatctgg agcgccaacg cggcggcttc ggctttctgg gcggtccggg
     3481 cgaaagccag atcgaaagcg accgccgcct gatcgccgag cgtattgtgc ggatcaaggc
     3541 ggaacttgag aaggtcaagc gcacccgcag tctgggccgc caggcgcgca agaaggtgcc
     3601 attcccggtg gtggcgctgg tgggctacac caatgccggc aagtcgaccc tgttcaaccg
     3661 gctcacgcgc gccaatgtgc tcgaagccga catgccgttc gccacgctcg atcccacctt
     3721 gcgcgcactg gccctgccgc atgggaccaa ggcgatcatg tcggatacgg tcggcttcat
     3781 ttcggatttg cccacgacgc tggtcgcggc gttccgggcg accctcgagg aagtgatgga
     3841 ggccgacgtc attcttcacg tgcgcgacgt agctcacggc gaagccgagg cgcaggcaaa
     3901 agacgtcgag cacgtgctgc gcgagctcga c
//
LOCUS       DATMDK010000025         2057 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_927548,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000025 DATMDK010000000
VERSION     DATMDK010000025.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2057)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2057)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2057
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_927548"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..296)
                     /locus_tag="VNN98_00530"
     CDS             complement(<1..296)
                     /locus_tag="VNN98_00530"
                     /inference="COORDINATES: protein motif:HMM:NF013478.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0006605 - protein targeting [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthetic protein FliR"
                     /protein_id="HWM60598.1"
                     /translation="MTIHLPALSGIILTYLLVFSRVGAMVMLLPAIGEMGVPSRVRLV
                     LALAIAFALTPQVQANYPAVMPQSTMALFILIAQEVTAGVLVGAMARIIMSALQV"
     gene            complement(375..638)
                     /locus_tag="VNN98_00535"
     CDS             complement(375..638)
                     /locus_tag="VNN98_00535"
                     /inference="COORDINATES: protein motif:HMM:NF013480.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthetic protein FliQ"
                     /protein_id="HWM60599.1"
                     /translation="MDPASTIDFARSAILVLLEIIAPAMVTALVVGLGIGLLQAVTQI
                     QEQTLVFVPKIVAIFVVLLITLPFAGAAISGLMTDIAGRIAAY"
     gene            complement(736..1050)
                     /locus_tag="VNN98_00540"
     CDS             complement(736..1050)
                     /locus_tag="VNN98_00540"
                     /inference="COORDINATES: protein motif:HMM:NF014143.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009288 - bacterial-type flagellum
                     [Evidence IEA];
                     GO_function: GO:0003774 - cytoskeletal motor activity
                     [Evidence IEA];
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0071973 - bacterial-type
                     flagellum-dependent cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-basal body complex protein FliE"
                     /protein_id="HWM60600.1"
                     /translation="MAIPAAAAAAYRAAAQMATPATSAAIAPANIPGGNFSDFLSGAI
                     KDSISTIRQGEGAATQQVQGKANLVDVVQSMNAAEITLDTVVAVRDKVVAAYQSIMNM
                     PI"
     gene            complement(1086..1496)
                     /gene="flgC"
                     /locus_tag="VNN98_00545"
     CDS             complement(1086..1496)
                     /gene="flgC"
                     /locus_tag="VNN98_00545"
                     /inference="COORDINATES: protein motif:HMM:TIGR01395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009425 - bacterial-type flagellum basal
                     body [Evidence IEA];
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0001539 - cilium or flagellum-dependent
                     cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body rod protein FlgC"
                     /protein_id="HWM60601.1"
                     /translation="MDFSKSMAVAASGMRVQTERMKIISENIANANSTSPIKGGDPYR
                     RKIATITPTFDRELDATLVSSGQALPDKSEFKSQYDPGNPNADSRGYVKLPNVDSLVE
                     IMDMREAQRSYEADLSVMESTKQMLAKTVDLLNK"
     gene            complement(1526..1927)
                     /gene="flgB"
                     /locus_tag="VNN98_00550"
     CDS             complement(1526..1927)
                     /gene="flgB"
                     /locus_tag="VNN98_00550"
                     /inference="COORDINATES: protein motif:HMM:TIGR01396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009429 - bacterial-type flagellum basal
                     body, proximal rod [Evidence IEA];
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0001539 - cilium or flagellum-dependent
                     cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body rod protein FlgB"
                     /protein_id="HWM60602.1"
                     /translation="MMNLPDVPLLSMLRERMTWLNQRQDVLSQNVANADTPGYVARDL
                     KPLDFEQALSQANSGAAMMTTNARHITLSPSRSGKFEDHETPDQESNPNGNAVSLEME
                     MIKVSETQAQFAAAANLYAKAMTLMKTAIGH"
BASE COUNT          391 a          588 c          651 g          427 t
ORIGIN      
        1 acctgcagcg cgctcatgat gatgcgcgcc atggcgccca ccagcacgcc ggcggtgact
       61 tcctgggcga tcagaatgaa cagcgccatg gtggactgcg gcatgacggc cggataattg
      121 gcctggacct gcggcgtaag cgcaaaggcg atggccagcg ccagcaccag gcgcacgcgg
      181 gacggcaccc ccatctcgcc gatcgccggc agcagcatca ccatcgcgcc cacgcggctg
      241 aacaccagca ggtaggtgag gataatgccg gacagcgcgg gaaggtggat ggtcatgacg
      301 ttttaaactc ggtctttccg cgcgttacga aaaatggacc tcaagcagcg agagcggtag
      361 gtccattttt ccatttaata agctgcgatg cggcccgcga tatcggtcat cagcccgctg
      421 atggccgcgc ccgcgaaggg cagggtgatc agcagcacca cgaaaatggc gacgatcttg
      481 ggcacgaaca ccagggtctg ttcctgaatc tgggtcacgg cctgcaacag gccgatgccc
      541 aggcccacca ccagggcggt gaccatggcg ggagcgatga tttccagcag caccagaatg
      601 gcggagcggg cgaagtcgat ggtggaagcg ggatccatat tcagtgtcct ttgccctcat
      661 gcttcgacaa gctcagcatg aggaatttca aaactattct caccctgagc ctgtcgaagg
      721 gtgagggggc taaactcaga tcggcatgtt catgatggac tggtaggcgg ccacgacctt
      781 gtcgcgcact gccaccacgg tatccaaagt aatctcggcg gcgttcatcg actggaccac
      841 atccaccaga ttggccttgc cctgcacctg ctgggtggcg gcgccttcgc cctgacggat
      901 ggtgctgatc gaatccttga tcgcccccga caggaagtcg gagaaattgc cgcccgggat
      961 attggcgggc gcgatggcgg ccgaggttgc gggcgtcgcc atctgggcgg cggcgcgata
     1021 ggcggcggcg gctgcggcgg gaatggccat ttaatattcc tttcttctca gcgaagggcg
     1081 gagggttact tatttaaaag atcgacagtc ttggccagca tctgcttggt cgattccatc
     1141 accgacaggt cggcttcgta ggaacgctgc gcctcgcgca tgtccatgat ttccaccagg
     1201 ctgtcgacat tgggcagctt cacatagcct cggctgtcgg cattgggatt gcccggatcg
     1261 tactggctct tgaattcgct cttgtcaggc agcgcctggc cggaactgac cagggtggcg
     1321 tccaactcgc ggtcgaaagt gggcgtgatg gtcgcaatct tgcggcgata gggatcgccg
     1381 cccttgatgg gcgacgtgga attggcgttg gcgatatttt ccgaaatgat cttcatgcgc
     1441 tcggtctgga cgcgcatgcc ggaggcggcg accgccatgg attttgaaaa gtccatctgt
     1501 aattctcctc ttggctattt gcggattagt gcccgatcgc cgttttcatc agcgtcatgg
     1561 ctttggcata gagattggcg gcggccgcga actgggcctg ggtctccgac accttgatca
     1621 tttccatttc cagcgacacg gcattgccgt tggggttgga ttcctgatcg ggcgtctcgt
     1681 gatcctcaaa cttgccggaa cgcgacggcg acagcgtgat gtggcgcgca ttggtggtca
     1741 tcatcgcggc gccggaattg gcctggctga gcgcctgttc gaaatccagc ggcttgagat
     1801 cgcgcgccac atagccgggg gtgtcggcat tggcgacgtt ctgcgacagc acgtcctggc
     1861 gctggttcag ccaggtcatg cgctcgcgca gcatggacag cagcggcaca tcgggcaggt
     1921 tcatcatgga cgtaaccttt tgttagcctt gaataggccc cgagggtgct ccccctatgc
     1981 ttaagcacgg cttaacaccg cgcaattttt gccgggcagt atctgccgcg ctttaaccgg
     2041 cgattaaggt tgatcgc
//
LOCUS       DATMDK010000026         2699 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1387460,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000026 DATMDK010000000
VERSION     DATMDK010000026.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2699)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2699)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2699
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1387460"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            275..463
                     /locus_tag="VNN98_00555"
     CDS             275..463
                     /locus_tag="VNN98_00555"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM60603.1"
                     /translation="MANVQKVRYPAALALGTLALGAFAVGALAIGYLAIGRLVVKRAR
                     IGRLEVDELVIRRIQRPL"
     gene            788..1354
                     /locus_tag="VNN98_00560"
     CDS             788..1354
                     /locus_tag="VNN98_00560"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM60604.1"
                     /translation="MRKMILAGAVLGGVLAPGVALADAREDVVSGLTRCAALADDRQW
                     LDCYYGAAQPMRAWLGLSPAPQAQLKLLQVQPKAAALPATVTRATVRTGPPPPPKRSG
                     IFDVFGGEDVVNNAPIASYEVTRNGFTVTLPDGQVWRQTDEDAAKSPVQWREPATSMR
                     VSISQGAMHSFNLVMNDENQHHKVTRVR"
     gene            complement(1387..1572)
                     /locus_tag="VNN98_00565"
     CDS             complement(1387..1572)
                     /locus_tag="VNN98_00565"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM60605.1"
                     /translation="MSNLQEFHHSLDETPDKKSRTMVAIVVAIAIAGLGIYVYESGMW
                     NPQPHQDAVSDSQLPAH"
     gene            complement(1790..>2699)
                     /locus_tag="VNN98_00570"
     CDS             complement(1790..>2699)
                     /locus_tag="VNN98_00570"
                     /inference="COORDINATES: protein motif:HMM:NF024808.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="extracellular solute-binding protein"
                     /protein_id="HWM60606.1"
                     /translation="KNIDVRPAIWDGDLADITAMVTKRQFKADVIDLELPMAVQACNQ
                     GLLEKIDPAILPPGADGTPVARDFVPGAVGPCWVGGMVYSQVMVFSPKLKRAPESLAD
                     FFDTKKFLGKRALSRAGAKFNFEMALLADGVAPGDIYKTLDTPQGLDRAFAKLTALNP
                     IWAHDSVGALGWLTNGQAVMATALNGDVPAQLAPNTIWDHQLYELDVLGIPAGDPNGK
                     AALDYIAYATASAPLAGVASWVAYGPARHSSLALVKPNPETGAAMRPLLPTAPENFRH
                     AFAVDNGWWLAHGAVIAPRWQEFVSR"
BASE COUNT          453 a          870 c          862 g          514 t
ORIGIN      
        1 gagctacggg gtcaccttgc ggccatgaat acagcgcgat ttggcgtagg aaaagcccgc
       61 cagagggcga cagaagccgt ttccaggcac attcctgacg aattgtgccc caggtgtgcc
      121 ccaccgcgtg gttggcggca tattctggac ctgatatctc gtatttgttg acttttcggg
      181 tcgtccattg acaccgaact gcggtttcct aaaccgtagg ccggtggttc gagtcccccc
      241 ggggtcacca ggcactcgtc aacgaaggtc cgacatggcc aatgtgcaga aagttcgata
      301 tcccgccgct ctcgcgctag ggacgttggc cttgggcgcc ttcgcggtcg gcgcactggc
      361 gatcggttat ctcgcgattg gaaggctggt ggtcaaacgc gcccggatcg gccggctgga
      421 agtggacgag ctggtgattc ggcgcattca gcggcccctc tagccaaacg cccgcatcac
      481 tctccatgtc atggcccgcc accccggtcc gcgcgaagcg cggccggagt gtaaactccg
      541 cgcgggccac ccaggtggga ccgtcctggt atcgaagatt tgactgcggc ccatctttca
      601 acatttgcga ttggcgtcac ctgggcggcc cggagtcccg ggccgtgaca aatgggaaat
      661 gccgccatca ctccacccaa agtcagcggc tgcaattgaa ggcgccggct ccctgtcttg
      721 cccgatgcca tcaagacctt ctaccatgtg tccagacagg tatttgccgg ttttgcgtgg
      781 ggatgcgatg cggaaaatga ttttggcggg cgcggttctg ggcggggtgc tggcgcccgg
      841 cgtggctctg gcggacgcgc gcgaggatgt ggtttcgggc cttacgcgct gcgccgcgct
      901 ggccgacgac cggcaatggc tggactgtta ttacggcgcg gcgcagccga tgcgcgcctg
      961 gctgggcctg tcaccggcgc cccaggcgca gctcaagctg ctacaggtgc agcccaaggc
     1021 ggcggcgttg cccgccaccg tcacccgcgc cacggtgcgc accggcccgc cgccgccgcc
     1081 caagcggtcc ggcattttcg acgtgttcgg gggcgaggat gtcgtcaaca atgcgccgat
     1141 cgcgtcctat gaagtcacgc gcaacggctt caccgtcacc ttgcccgacg gccaggtctg
     1201 gcggcagacc gacgaagacg ccgccaagtc tccggtgcaa tggcgcgagc ccgccaccag
     1261 catgcgggta tccatcagcc aaggcgcgat gcacagcttc aacctggtga tgaacgacga
     1321 aaaccagcat cacaaggtga cgcgcgtccg ataaaaaaag ccgcccgtcg ccgggcggct
     1381 ccgttttcag tgcgcgggaa gctgactgtc cgacacggcg tcttggtgcg gctgcggatt
     1441 ccacatcccc gattcgtaga cgtaaattcc gaggccggct atcgcgattg ctacgactat
     1501 cgccaccatg gtgcgggact ttttgtccgg tgtttcgtcg agactgtggt ggaactcctg
     1561 cagattgctc actgttacct cccgaattgt tccgccttgg ttggcggtct ctttatggcg
     1621 tctccattgc tgaacgtcgt cacgctgcgc cgtatccaaa ggcggcgctt cgtccctttt
     1681 ataccatctt ttgcggcgag cggttagtcg tgtgcggtcg cgaaatggcg ggcttttggc
     1741 cgtatccggc cacgaaatgg ccggttcccg cctatggcaa ggcgccccat catcgcgaga
     1801 cgaattcctg ccagcgcggc gcgatcacgg cgccatgggc cagccaccag ccattatcga
     1861 cggcgaaggc gtggcgaaaa ttctccggcg cggtgggcag caaggggcgc atcgcggcgc
     1921 cggtttccgg attgggtttc accagcgcca gcgaggaatg ccgtgccgga ccgtaagcca
     1981 cccagctcgc caccccggcc aggggcgcgc tagccgtggc gtaggcgata taatccagcg
     2041 cggctttccc gttgggatcg cccgcgggaa tgcccagcac gtccagctcg tagagctgat
     2101 gatcccagat cgtgttgggc gccaattgcg ccggcacgtc gccattcagg gccgtggcca
     2161 tcactgcctg gccgttcgtc agccagccca gcgcgcccac actgtcgtgc gcccagatcg
     2221 gattcagcgc cgtcagtttg gcgaaggcgc ggtccaggcc ttgcggcgtg tccagggttt
     2281 tgtagatgtc gccgggcgcc acgccgtcgg ccagcaaggc catttcgaag ttgaacttgg
     2341 cgccggcccg gctcagcgcc cgcttgccga ggaatttttt ggtgtcgaag aaatccgcca
     2401 gactttccgg cgcgcgcttc agcttgggcg agaacaccat cacctgggaa tagaccatgc
     2461 cgcccaccca gcagggaccg acggcgcccg gcacgaagtc gcgggccaca ggcgtgccgt
     2521 ccgcgcccgg cggcaggatg gcgggatcga tcttctccag caggccctga ttgcaggcct
     2581 ggaccgccat gggcagttcc aggtcgatca catcggcctt gaactggcgc ttcgtcacca
     2641 tcgctgtgat atcggccaga tcgccgtccc agatggcggg gcgcacatcg atattcttt
//
LOCUS       DATMDK010000027         2561 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2986367,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000027 DATMDK010000000
VERSION     DATMDK010000027.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2561)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2561)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2561
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2986367"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..980
                     /locus_tag="VNN98_00575"
     CDS             <1..980
                     /locus_tag="VNN98_00575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005098093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="NAD(P)(+) transhydrogenase (Re/Si-specific)
                     subunit beta"
                     /protein_id="HWM60607.1"
                     /translation="TGSVIAFAKLNGNMSGKPIMLPSRHLINIALAVLLVALIVVFVT
                     SESHLLFWAIVLAALVLGGLIIIPIGGADMPVVVSMLNSYSGWAAAGIGFTLENTALI
                     ITGALVGSSGAILSYIMCKGMNRSFVSVIMGGFGGDSSAAVAGAVETRPVKQGSADDA
                     AFIMKNASSVIIVPGYGMAVAQAQHALREMADKLKKEGVKVTYAIHPVAGRMPGHMNV
                     LLAEANVPYDEVFELEDINSQFAQADVAYVIGANDVTNPSAKTDPKSPIFGMPILDVE
                     KAKTVLFIKRGMGAGYAGVENELFFKDNTMMLFADAKKMTEEIVKALDH"
     gene            1013..1483
                     /locus_tag="VNN98_00580"
     CDS             1013..1483
                     /locus_tag="VNN98_00580"
                     /inference="COORDINATES: protein motif:HMM:NF012792.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HWM60608.1"
                     /translation="MIRDARLPADEPAILSFIAGLQDYEAAFEPDRRRDPNFAVEHWR
                     SLEHRCAERHGIFLIAEDDQKPVGWAFAHDEKAELFVVEPERRHGFLAELYVVPQARG
                     KGLGRALIEGCETWARGRGHRLLIVGVLAKNPGAIRAYEGVGYAPYTMILRRYL"
     gene            1495..>2561
                     /locus_tag="VNN98_00585"
     CDS             1495..>2561
                     /locus_tag="VNN98_00585"
                     /inference="COORDINATES: protein motif:HMM:NF016289.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M28 family peptidase"
                     /protein_id="HWM60609.1"
                     /translation="MTWIACLALLYCGSASAQAPDPSAANIRADMAFLASDRLKGREA
                     GTPEYDMAAKYVADQMKQIGLVPDLKGSYFQHVPLTAFRTKDQGALSLQDKSGHATPL
                     VFGTDYLVGGNALAATVDVNAPLVFVGFGVVAPEHARDDYAGLDVKGKIVVALSGAPK
                     FLQSEERAYYGNARNKLRVAWAHGAAGFVSVDTPTRERLHPFANAVRQYQSWGMTWRK
                     PDGKPFVPSPLPGLASISITGAPKLLGADTAHILAAAETTAGDVRGFALPLSLHAVLH
                     SEIKNVESENIVGLLPGTDPQLKKEFVVLSAHLDHIGITPPVNGDSINNGALDNASGV
                     ATTLEVARLFKGKIVVALSGAP"
BASE COUNT          471 a          798 c          812 g          480 t
ORIGIN      
        1 tcaccggctc ggtcatcgcc ttcgccaagc tcaacggcaa catgtcgggc aagccgatca
       61 tgctgcccag ccgccacctg atcaacatcg ccctggccgt gctgctggtg gccctcatcg
      121 tcgtcttcgt caccagcgag agccacctgc tgttctgggc gatcgtgctg gcggcgctgg
      181 tgctgggcgg gctgatcatc atcccgatcg gcggcgccga catgccggtg gtggtctcga
      241 tgctgaactc ctattccggc tgggcggcgg ccggcatcgg cttcacgctc gagaacaccg
      301 ccctgatcat caccggcgcg ctggtcggct cctccggtgc catcctgtcc tacatcatgt
      361 gcaagggcat gaaccgcagc ttcgtctcgg tgatcatggg cggctttggc ggcgacagca
      421 gcgcggccgt ggccggcgca gtggaaaccc gcccggtcaa gcagggctcg gccgacgatg
      481 ccgccttcat catgaaaaac gcttccagcg tcatcatcgt gccgggttac ggcatggcgg
      541 tggcccaggc gcagcatgcc ttgcgcgaaa tggccgacaa gctgaagaag gaaggcgtca
      601 aggtgaccta cgccatccat ccggtggcgg gccgcatgcc cggccatatg aacgtgctgc
      661 tggccgaagc caatgtgcct tatgacgaag tgttcgagct ggaagacatt aattcgcagt
      721 tcgcccaggc cgatgtggcc tatgtgatcg gcgccaatga cgtcaccaat cccagcgcca
      781 aaaccgatcc caagtcgccg attttcggca tgccgatcct ggacgtggaa aaggccaaga
      841 ccgtgctgtt catcaagcgc ggcatgggcg cgggctatgc cggtgtggag aacgaactgt
      901 tcttcaagga caacaccatg atgctgttcg ccgacgccaa gaagatgacg gaagagattg
      961 tcaaagccct cgaccattag tatccccgga gcatttcctt ggaaatgcga ccatgattag
     1021 agacgcccgt ctgcccgctg acgaaccggc gatcctgtcc ttcatcgcgg gcctgcagga
     1081 ttacgaggcg gcgttcgaac ccgaccgccg ccgcgacccc aatttcgccg tcgagcattg
     1141 gcgcagcctc gagcatcgct gcgccgagag gcacggtatt ttcctgatcg cggaagatga
     1201 ccaaaagccc gtgggctggg ccttcgccca tgatgagaag gccgaattgt tcgtggtcga
     1261 accggaacgc cgccacggct ttctggccga gctttatgtg gtgccccagg cgcgcggcaa
     1321 gggcctgggc cgcgccctga tcgaaggctg cgagacctgg gcgcgcgggc gcggtcaccg
     1381 attgcttatc gtgggcgtgc tggcgaaaaa tcctggcgcc attcgcgcct atgaaggcgt
     1441 aggttatgcg ccctacacca tgatcctgcg gagatatcta tgacagcgaa ccggatgacg
     1501 tggattgcct gtcttgcact gctctattgc gggtccgctt cggcccaggc gcccgatccg
     1561 tccgcggcca acattcgtgc cgatatggcg ttcctggcca gcgacaggct gaaaggccgc
     1621 gaagcgggca cgccggaata tgacatggcg gccaagtatg ttgccgatca aatgaagcag
     1681 atcggcttgg tgccagacct caagggttct tatttccagc atgtgccgct cacggccttt
     1741 cgcacaaaag accagggcgc gctcagcttg caggacaagt ccggccacgc cacgccattg
     1801 gtgttcggga ccgattatct ggtgggcggc aatgcgctcg ccgctacggt ggatgtgaac
     1861 gcgcccttgg tgtttgtcgg cttcggcgtg gtggcgcccg aacatgcccg cgacgactat
     1921 gccggcttgg acgtcaaggg caagatcgtg gtggcgctgt ccggtgcgcc gaaattcctc
     1981 cagtcggaag agcgcgccta ttacggcaat gcccgtaaca agctgagggt agcctgggcg
     2041 cacggcgcgg cagggtttgt ttcggtggac acgccgaccc gcgaaaggct ccatcccttc
     2101 gccaatgcgg tgcggcagta tcaaagctgg ggcatgacct ggcgcaagcc tgacggcaaa
     2161 cccttcgtgc cgtcacccct gccggggctg gcctcgatca gcatcacggg cgcccccaaa
     2221 ctgctcggcg cggacacggc gcacattctc gccgctgccg aaaccaccgc gggcgacgtg
     2281 cgcggtttcg ccctgccgct atcgttgcat gcggtgctgc acagcgagat caagaatgtg
     2341 gaaagtgaga atatcgtggg cctgctgccg ggcaccgatc cccagttgaa gaaggaattc
     2401 gtggtgctgt ccgctcatct cgaccatatc ggcatcaccc cgccggtgaa tggcgattcc
     2461 atcaacaatg gcgcgctgga caatgcctcc ggggtagcga ccactttgga ggtggcgcgg
     2521 ctgttcaagg gcaagatcgt ggtggcgctg tccggtgcgc c
//
LOCUS       DATMDK010000028         2142 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_475942,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000028 DATMDK010000000
VERSION     DATMDK010000028.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2142)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2142)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2142
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_475942"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1125)
                     /locus_tag="VNN98_00590"
     CDS             complement(<1..1125)
                     /locus_tag="VNN98_00590"
                     /inference="COORDINATES: protein motif:HMM:NF016203.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="altronate dehydratase family protein"
                     /protein_id="HWM60610.1"
                     /translation="MASFLRLHPTDNVVVAVEGLSPGDIVDDVKIIRRIPPGHKAAVR
                     AIKKDEPALKFGQIIGFASQDIVPGDWVHEHNIGFHAVDRDYQFEVDARDPAPLTGAT
                     FQGFRRANGKFGTRNYLGILTSVNCSATVARLIAREVEKRGLLDDYPEVDGIIPLVHG
                     HGCGMDAKGEGYEVLKRTQWGYAANPNMGAVLMVGLGCETFQIARWKQAYNIMESDTF
                     RSLTIQDSGGTAKAIEAGVAAVRDLLPAAGKVKRETAPASELMLALQCGGSDGYSGIT
                     ANPSLGAAVDLLVAHGGTAILSETPEIYGAEHLLTRRASPEVGKKLIKRIRWWENYTS
                     RNDGSMNNNPSPGNKAGGLTTILEKSLGAAAKGGTTRLKAV"
     gene            1186..1536
                     /locus_tag="VNN98_00595"
     CDS             1186..1536
                     /locus_tag="VNN98_00595"
                     /inference="COORDINATES: protein motif:HMM:NF017174.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-rhamnose mutarotase"
                     /protein_id="HWM60611.1"
                     /translation="MSRRLCFALDLVNDAAKIAEYETFHAPGGVWPQIVDDIRAQGIE
                     GMEIWRTGTRMVMIATVADDYPRARDIPAQYDEWESLMWTFQKALPHAAPGQKWLPMT
                     KIFDLAQQKGLTAS"
     gene            complement(1523..>2142)
                     /locus_tag="VNN98_00600"
     CDS             complement(1523..>2142)
                     /locus_tag="VNN98_00600"
                     /inference="COORDINATES: protein motif:HMM:NF024771.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="mandelate racemase/muconate lactonizing enzyme
                     family protein"
                     /protein_id="HWM60612.1"
                     /translation="NQVDDVVNFFGGFRKALGKDVEIGLECHAHYDTETGIQICNQIE
                     PYRPLWVEEPVPSDNVDSMLRIRNNSRVPIAAGENIYTRYGFRPFLEKQALSIIQPDF
                     TKTGGLFEGMKIANMAETYNIPVAPHGVCTPLGTLAITHVCGVIPNLLVQEFTQYQEK
                     NFTELCDPVKLDADGFLPVPDAPGIGTELNEAAVKERLDPEFKML"
BASE COUNT          405 a          665 c          649 g          423 t
ORIGIN      
        1 caccgccttc aggcgtgtgg tgccaccctt ggccgccgcg cccagggact tttccaggat
       61 ggtggtcaga ccgcctgcct tgtttcccgg cgagggattg ttgttcatgc tgccgtcatt
      121 gcggctggtg taattctccc accagcggat gcgtttgatc agttttttgc cgacttcagg
      181 actggcccgg cgggtcagca gatgttccgc gccgtagatc tccggcgtct ccgacaggat
      241 ggcggtgccg ccatgggcga ccagcaggtc caccgccgca cccagagacg gattggcggt
      301 gatgccggaa tagccgtcgc tgccgccgca ttgcagtgcc agcatcagtt ccgatgcggg
      361 cgcggtttca cgcttcacct tgcctgcggc cggcaacaga tcgcgcaccg ccgccacgcc
      421 ggcttcgatg gccttagcgg tgccgccgga atcctggatg gtcagcgagc ggaaggtgtc
      481 gctttccatg atgttgtagg cctgcttcca gcgcgcgatc tggaatgtct cgcagcccag
      541 cccaaccatc agcaccgcgc ccatattggg attggcggca tagccccatt gggtgcgctt
      601 caagacctca taaccttcgc ccttggcgtc catgccgcag ccatggccat gcaccagcgg
      661 gatgatgcca tcgacctcgg gataatcgtc cagcaggccg cgtttctcga cctcacgcgc
      721 gatcaaccgc gccacggtgg cggaacagtt cacactggtg aggatgccca gataattgcg
      781 ggtgccgaac ttgccgttgg cacggcgaaa accctggaag gtggcgccgg tgagcggtgc
      841 gggatcgcgg gcatcgacct cgaactgata gtcgcggtcc accgcatgaa agccgatatt
      901 atgctcatgc acccaatcgc cgggcacgat gtcctggctg gcgaaaccga tgatctggcc
      961 gaatttcagc gccggctcat ctttcttgat ggcgcgcacc gccgccttgt ggccgggcgg
     1021 aatgcgccgg atgattttca catcgtccac aatgtcgccg ggcgacagac cttccaccgc
     1081 caccaccaca ttgtcggtgg gatgaagccg caggaaagac gccatgattg ctcccgaaag
     1141 cgaagggggc tcttatagtc caacgatcat ggggagaata tcaaaatgag ccgccgtctc
     1201 tgctttgccc tggacctggt caatgacgcg gccaaaatcg cggaatacga gaccttccat
     1261 gcccccggcg gggtgtggcc gcagatcgtg gacgatatcc gcgcccaggg catcgaaggc
     1321 atggaaatct ggcgcacggg gacgcgcatg gtgatgatcg ccaccgtggc cgacgactat
     1381 ccccgcgccc gcgacattcc ggcccaatac gacgaatggg aaagtctgat gtggaccttc
     1441 cagaaggccc tgccccatgc cgcgcctggc cagaaatggc tgccgatgac aaagatcttc
     1501 gatctcgccc agcagaaggg cctcacagca tcttgaattc gggatccagg cgctctttca
     1561 ccgcggcttc gttcagttcg gtgccgatgc ccggcgcatc cggcaccggc agaaagccgt
     1621 cggcgtcgag tttcaccgga tcgcacaatt cggtgaaatt cttttcctga tactgggtga
     1681 attcctgaac caaaaggttg gggatcacgc cgcagacatg ggtgatggcc aaggtcccca
     1741 gcggggtgca gacgccgtgc ggcgccaccg ggatattgta agtctcggcc atgttggcga
     1801 tcttcatgcc ttcaaacaac ccgccggtct tggtgaagtc cggctggatg atggacagcg
     1861 cctgcttctc caggaacgga cgaaagccat agcgggtata gatattctcg cccgccgcga
     1921 tcggcacgcg gctgttgttg cggatgcgca gcatggagtc gacattgtca ctgggcaccg
     1981 gctcctccac ccataacggg cgataaggct cgatctggtt gcagatctgg atgccggttt
     2041 cggtgtcgta atgggcatgg cattccaggc cgatctcaac atccttgccc agcgccttgc
     2101 ggaagccgcc gaagaaattg accacatcat ccacctgatt gt
//
LOCUS       DATMDK010000029         2837 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1843638,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000029 DATMDK010000000
VERSION     DATMDK010000029.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2837)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2837)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2837
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1843638"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..477
                     /locus_tag="VNN98_00605"
     CDS             <1..477
                     /locus_tag="VNN98_00605"
                     /inference="COORDINATES: protein motif:HMM:NF014232.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UvrB/UvrC motif-containing protein"
                     /protein_id="HWM60613.1"
                     /translation="AETSRRRAKQEAYNTEHGITPASVKRNIADIMGSMYERDHVTVD
                     GGQLAMAEGGREFVGHNIKAVIAEIEKKMRAAAADLEFEEAARLRDELKRLQTTAMAI
                     ADDPFARQSDVARLDAEITYSTDDSPSKPIPSKGGRKRLQRAGRPNVPKTFGSRAR"
     gene            742..945
                     /locus_tag="VNN98_00610"
     CDS             742..945
                     /locus_tag="VNN98_00610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014397260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005829 - cytosol [Evidence IEA];
                     GO_function: GO:0001072 - transcription antitermination
                     factor activity, RNA binding [Evidence IEA];
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cold-shock protein"
                     /protein_id="HWM60614.1"
                     /translation="MTIGTVKFFNAAKGFGFISPEGGGKDVFVHVSAVEAAGMRTLNE
                     GQKVNFDIQPDARGSKAANLSAA"
     gene            986..1255
                     /locus_tag="VNN98_00615"
     CDS             986..1255
                     /locus_tag="VNN98_00615"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM60615.1"
                     /translation="MLAKETIISDSTPRQKDAQRTANGVFAAWEKRTALVKQQANAHS
                     DASDAKTIRLKALRLEKEAQDAEAARLKAENAPPAPVKKRAKRKL"
     gene            1259..2116
                     /locus_tag="VNN98_00620"
     CDS             1259..2116
                     /locus_tag="VNN98_00620"
                     /inference="COORDINATES: protein motif:HMM:NF013961.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglutaminase family protein"
                     /protein_id="HWM60616.1"
                     /translation="MPLFQISHRTEYNYRQPVRLGPHRLMLRPRESRELRLVSCEIVT
                     DPPSTLTWAHDVFGNAIATAAFDASSASLVIDSKVTLELNAAAWPVFPIAASAIIYPF
                     HYSAEERTDLGALLSPQYPDFMGRLSAWTASFVRSNPTDTLALLKDLNAGISATAAYQ
                     AREDEGTQPPSRTLDLGRGSCRDFAVLFVEAARTLGFGARIVSGYIFNPALQASDSTT
                     HAWAEVFVPGAGWISFDPTNRQMGGFNLIPVAVARDLSQAMPVSGTFIGASGDQTRLT
                     VAVRVTEQI"
     gene            2129..2362
                     /locus_tag="VNN98_00625"
     CDS             2129..2362
                     /locus_tag="VNN98_00625"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM60617.1"
                     /translation="MLPKADVEMFVKGWVTRNVRSVPGLANLNFEVDRLAADLTGEAR
                     ANGISGGDLNRAMGDIDEYLTGQYERVSAVPVA"
     gene            complement(2375..2743)
                     /locus_tag="VNN98_00630"
     CDS             complement(2375..2743)
                     /locus_tag="VNN98_00630"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM60618.1"
                     /translation="MSDKSIAEKLQAKGSRTLAVLNAKPALDRALSIPARRAPPAKAD
                     VVVFFAANRAQLEGKLPGLLPKLGAASILWVAYPKLTSALADDLSRDVIHAWAPSLGL
                     DTVSQIAIDDDWSALRLKRV"
BASE COUNT          554 a          993 c          829 g          461 t
ORIGIN      
        1 gccgagacca gccgccgccg cgccaaacaa gaagcctaca acaccgaaca cggcatcacg
       61 cccgccagcg tcaagcgcaa catcgccgac atcatgggca gcatgtatga gcgcgaccat
      121 gtcacggtgg acggcggcca gctggccatg gcggaaggcg ggcgcgaatt cgtcggccac
      181 aatatcaagg cggtgatcgc cgagatcgaa aagaagatgc gcgccgccgc cgccgacctg
      241 gagttcgagg aggccgcccg gctgcgcgac gaactcaagc ggctgcagac cacggcgatg
      301 gccatcgccg acgacccctt cgcccgccag agcgacgtgg cccggctgga cgccgagatc
      361 acctattcca ccgacgacag cccctcaaag ccgatcccgt ccaagggcgg acgcaagcgg
      421 ttgcagcggg cggggcggcc caatgtgcct aagacgtttg ggagcagggc aagataagtg
      481 gctgttcgcg ctagactata tccagttagc cgctatcgcg gcggcgctac gctgacgcta
      541 gccgttgtaa attagggtca ttgcgcctat atcaggccct acgtggttct tgcgtccctg
      601 tcagacgaag cgcttctgtc tttctgaccc gccaacgcgc gccggacgaa ccgaaaaact
      661 tcctaacgac cagatgttct tgtttccacg gccgtccctg catttcgcat gggcggaacc
      721 cgatgattaa aaggaacaat catgaccatc ggtaccgtga agtttttcaa cgccgccaag
      781 ggtttcggtt tcatttcgcc tgaaggcggc ggcaaggacg tgtttgtgca cgtctccgcc
      841 gtcgaagcag ccggcatgcg caccctgaat gaaggtcaga aggtcaactt tgacattcag
      901 ccggatgcac gcggctccaa ggccgccaat ctctcggccg cttaagtaac tgaacgagcg
      961 gggcggcggc ccaaagccgc cgcccttgct tgccaaggag actatcatct cagattccac
     1021 cccccgccag aaagacgccc agcgcaccgc caatggcgtg ttcgccgcct gggaaaaacg
     1081 caccgctttg gtgaaacagc aggccaacgc ccatagcgac gccagcgacg ccaagaccat
     1141 ccgcctcaag gccctgcgcc tggagaagga agcgcaggac gccgaagccg cccggctcaa
     1201 agccgagaac gccccgcccg cgcccgtgaa gaaacgcgcc aagcgcaagc tttagctctt
     1261 gccgcttttc cagatcagcc accgcaccga atataactac cgccaacccg tccgtctcgg
     1321 cccgcaccgt ttgatgctgc ggccgcgcga aagccgcgag ttgcgcctgg tgtcctgcga
     1381 gatcgtcacc gacccgccct ccactttgac ctgggcgcat gacgtgttcg gcaacgccat
     1441 cgccaccgcc gccttcgatg ccagctccgc cagcctggtg atcgacagca aggtcacgtt
     1501 ggagctgaac gccgccgcct ggccggtctt tcccatcgcc gccagcgcca tcatctatcc
     1561 cttccactat tccgccgagg agcgcaccga tttgggcgcc ctgctcagcc cgcaatatcc
     1621 cgatttcatg ggccggctgt cggcctggac cgccagcttc gtgcgcagca atcccaccga
     1681 caccttggcg ctgctgaagg atctcaatgc cggcatctcc gccaccgccg cctatcaggc
     1741 gcgcgaggat gaaggcaccc agccgcccag ccgcacgcta gatttgggcc gcggctcctg
     1801 ccgcgatttc gccgtgctgt tcgtggaagc cgcgcgcacc ctgggtttcg gggcgcgcat
     1861 cgtctcgggc tatatcttca atcccgccct gcaggccagc gacagcacca cccatgcctg
     1921 ggcggaagtc ttcgtgcccg gcgcgggctg gatcagcttt gatcccacca accgccagat
     1981 gggcggcttc aacctgatcc cggtggccgt ggcgcgcgac ctgtcccagg ccatgcccgt
     2041 cagcggcacc ttcatcggcg ccagcggcga tcagacccgc ctgaccgtcg ccgtacgtgt
     2101 cacagaacag atttgaaaag gaatacccat gttgcccaag gccgatgtcg agatgtttgt
     2161 taaaggctgg gtgacgcgca atgtccgcag cgtaccgggc cttgccaacc tgaacttcga
     2221 agtcgaccgc ctggccgccg acctcaccgg cgaagcccgc gccaacggca tctccggcgg
     2281 cgacctcaac cgcgccatgg gcgatatcga cgaatacctg accggccagt acgagcgggt
     2341 tagcgccgta cccgtggcct gacagtcttg cctgtcacac ccgcttgagg cgtagcgccg
     2401 accagtcatc gtcgatggcg atctggctga ctgtgtccag ccccagggac ggcgcccagg
     2461 catggatcac atcgcggctg agatcatccg ccagtgccga ggtcaatttg ggataggcga
     2521 cccagagaat gctggccgcc cccagtttcg gcagcaggcc gggaagcttg ccctcaagct
     2581 gcgcccggtt ggcggcgaaa aacaccacca catcagcctt cgccggcggc gcgcgccggg
     2641 ccgggatact gagggcgcga tccagcgccg gcttggcatt cagcaccgcc agggtgcggc
     2701 tgcccttggc ctgcagcttc tcggcaatcg acttatctga catcgcgacc tccccagacc
     2761 cgaaacgata acatcaccgg cagcggcatc aactgagcaa cgagcgtacc ggccctgtca
     2821 ccctcccctt gagggag
//
LOCUS       DATMDK010000030         2360 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_928634,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000030 DATMDK010000000
VERSION     DATMDK010000030.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2360)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2360)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2360
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_928634"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1510)
                     /locus_tag="VNN98_00635"
     CDS             complement(<1..1510)
                     /locus_tag="VNN98_00635"
                     /inference="COORDINATES: protein motif:HMM:NF025214.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HWM60619.1"
                     /translation="MSNALKVEKLRTTARERHAAGQLDEAEHLYRRILELHRTDLEAR
                     HMIGVVRLQQGRAADALAMIEPLVGEAPGNADIRAQCGLARQELGQRDQAMADFDQAL
                     TLNPDNAMALLYRGNLLMETGSFAGALESYDRLLTLAPGYDEAWFRRGSTLWLMERFD
                     EALASYARALELNPNRFSAAFNSGTVLLKLERYDEAFAAFEKARALAPDHRYVLGSAA
                     AALLGACDLTRWEAHRSLLVDAVQGRRSAVIAPLVFLPFCDDGAFRRACSENFVADRV
                     PSPGAPLWTGQQYKHGRIRIAYLSSDFHQHATANLIAGLIERHDRDRFEVTAISFSPD
                     DSSAMRTRLIEGFDRFEDVRAKSDAEVAQLLREGEFDIAIDLKGHTEGSRPGILAHRP
                     CPVQVNYLGYPGTIAGPWLDYIIADATVLPFDHQLFYSEKIVHLPHCYQVNDSTRPIA
                     AETPTRGEAGLPQDSFVFCCFNAAWKITPAVFNVWMRLLTQVAGSVLWLLEDN"
     gene            complement(1598..2218)
                     /locus_tag="VNN98_00640"
     CDS             complement(1598..2218)
                     /locus_tag="VNN98_00640"
                     /inference="COORDINATES: protein motif:HMM:TIGR02466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2OG-Fe(II) oxygenase family protein"
                     /protein_id="HWM60620.1"
                     /translation="MADRLLSLFPTTILHRHIDGMEEANRQLAALVTQIAATEPNSTT
                     GTTTEGGFQTKEDLFQRANPGIETLKPHIFNAVQEYATLTIRQELTRPPAKVDFILWG
                     WAVSYKAGDTQGLHVHPNANVSGVYYVSAPPATLAPGDAGKISFYDPRPRATMIQLPF
                     QANRHRIAPVPGDMYLFPSWLEHSVSAFQGDGTRLCIAFNAKLILE"
BASE COUNT          467 a          731 c          725 g          437 t
ORIGIN      
        1 cattgtcttc cagcagccac agcacactgc ctgccacctg cgtcagcagc cgcatccaga
       61 cattgaagac ggcaggcgtt attttccagg cggcattaaa gcagcaaaag acaaagctat
      121 cctgcggcaa accggcctca ccgcgcgtcg gcgtctccgc ggcgatgggc cgggtggaat
      181 cattgacctg atagcagtgc ggcagatgga cgatcttctc gctgtagaaa agctgatgat
      241 cgaagggcag caccgtcgca tcggcgatga tgtaatccag ccagggcccg gcgatggtac
      301 cgggatagcc cagatagttg acctgcaccg gacagggccg gtgtgccagg ataccggggc
      361 gcgagccttc ggtatggccc ttcaagtcga tggcgatgtc gaactcgcct tcccgcaaca
      421 gttgcgccac ttcggcatcg cttttggcgc gcacatcctc gaaacggtca aagccctcga
      481 taagccgagt ccgcatggcg ctgctgtcat cgggactgaa ggatatcgcc gtcacctcaa
      541 agcggtcacg gtcatggcgt tcgatcaggc ccgcgataag attggcggtg gcgtgctggt
      601 gaaaatcgct tgacagatag gcaatgcgga tacgcccatg cttgtactgt tggccagtcc
      661 agagcggcgc cccgggcgac ggcacgcggt cggcgacaaa gttctcgctg caggcgcgcc
      721 tgaaggcgcc gtcatcgcag aaaggcagaa agaccagcgg cgcgatcacc gcgctgcgac
      781 gaccctgcac cgcgtccacc agcagcgacc gatgcgcttc ccagcgcgtc aggtcgcagg
      841 cacccagcaa cgcagccgca gcgctcccga gcacatagcg atggtccggc gccagggcgc
      901 gcgccttttc aaaagcggcg aaggcttcgt cataacgttc cagtttcagc agaaccgtgc
      961 cgctgttgaa ggcggcgctg aagcggttcg gattcagttc cagcgccctg gcatagctgg
     1021 ccagcgcttc gtcaaagcgc tccatcaacc acagggtgct gccgcggcgg aaccaggcct
     1081 cgtcatatcc aggcgcgagt gtcagcagcc ggtcgtaact ttccagcgcc cccgcaaacg
     1141 atcccgtctc catcagcagg ttgccgcgat agagcaaagc catcgcgttg tccggattca
     1201 gcgtcagagc ctggtcgaaa tccgccatgg cttggtcgcg ctgtcccaac tcctgccgcg
     1261 ccagaccgca ttgggcgcga atgtcggcgt taccgggcgc ctcaccgacc agcggttcga
     1321 tcatcgccag cgcatcggcg gcgcggccct gctgcagccg caccacgccg atcatgtgac
     1381 gcgcttccag atcagtgcga tgcaattcca gaatgcgccg gtagagatgc tccgcttcat
     1441 ccagctgccc ggcggcatgc cgctcgcgcg ccgtggtgcg cagcttttca accttgagag
     1501 cgttgctcat cgctcatcac ctagtataca cggtgccggc gcgcatggta tataagctat
     1561 tgatattatt gatataattt actatctgcg gtccatctca ttccagaatc agcttggcgt
     1621 tgaaagcgat gcagagacgc gtcccgtcgc cctggaaggc ggacaccgaa tgctccagcc
     1681 agctgggaaa cagatacatg tcgccgggca cgggcgcgat gcggtgccgg ttcgcctgaa
     1741 acggaagctg gatcatggtg gcgcgcggcc tgggatcgta gaaggaaatt ttcccggcat
     1801 cgcccggcgc caaggtggcg ggcggcgcgc tgacataata gacgccgctg acattggcgt
     1861 tggggtgaac gtgcagccct tgcgtatcgc ccgccttgta cgacactgcc cagccccaca
     1921 ggatgaaatc gaccttcgcc ggcggccgcg tcaattcctg gcggatggtc agcgtggcat
     1981 attcttgcac ggcgttgaaa atatgcggct tgagggtttc gataccggga ttggcgcgct
     2041 ggaacaggtc ttccttggtc tggaagccgc cctcggtggt ggtgccggtg gtggaattgg
     2101 gctcggtcgc cgcgatctga gtcaccagcg ccgcaagctg acggttcgcc tcctccatgc
     2161 cgtcgatgtg gcggtgcagg atggtggtgg ggaaaagcga aagaagtctg tcagccacgc
     2221 caggcatcct gttttgttat gaaagacgtt tcttgcagac atgataaagc aaatacgcgc
     2281 gcccgcaaaa ccggctacct ctgcgaccag ccgggatcac tggcatccag ccgccgcttc
     2341 aaggcctcca gatgcaacgc
//
LOCUS       DATMDK010000031         2875 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_249549,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000031 DATMDK010000000
VERSION     DATMDK010000031.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2875)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2875)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2875
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_249549"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..625
                     /locus_tag="VNN98_00645"
     CDS             <1..625
                     /locus_tag="VNN98_00645"
                     /inference="COORDINATES: protein motif:HMM:NF045169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="altronate dehydratase"
                     /protein_id="HWM60621.1"
                     /translation="GTAILSETPEIYGAEHLLTRRAAPEVGKKLIERIRWWEDYTSRN
                     AGSMNNNPSPGNKAGGLTTILEKSLGAAAKGGTTRLKAVVEYAEPVTAKGFVFMDTPG
                     YDPVSATGQVAGGANILCFTTGRGSAYGCKPTPSIKLATNTPVYERMIDDMDINCGDV
                     LEGVSIADKGQEIFDHILKIASGMRSKSEKLGYGDAEFVPWQIGATM"
     gene            692..1966
                     /gene="fucP"
                     /locus_tag="VNN98_00650"
     CDS             692..1966
                     /gene="fucP"
                     /locus_tag="VNN98_00650"
                     /inference="COORDINATES: protein motif:HMM:TIGR00885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015535 - fucose:proton symporter activity
                     [Evidence IEA];
                     GO_process: GO:0015756 - fucose transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L-fucose:H+ symporter permease"
                     /protein_id="HWM60622.1"
                     /translation="MSKLPVVEKRYVVAFALTSTLFFAWGLASQFNDLLLHHFQKALD
                     LTRPQASLTQFAFYIGYFCAPLPAAMIIRRLGYKKTIIIGLALYAIGAFLFVPAAHLR
                     VYGIFLAALYIIAIGAGFLETSANPYIAILGAAETASPRLNFAQAFNGVATVLGPLVG
                     GYVIFSGVEYTPAQMAAMGPDAVDHWRAQEAAAVGPPYLVLGILMVVIASAIAITRYP
                     PLRADVTPETSRSPFAVLARPRVLYAVIAQFFYVGAQVGTWSLLVDFAQEAAHVPERT
                     GAQVYLEATMIAFCVGRFVGAWLQRTINPPRQLMLYAGCNILLCCLAAVIGGIPSIWA
                     LVATSFFMSIMFPTIFALGLEGLGPETEFASSFIVMAICGAAVIPPVMTLFASFTGAL
                     HWSMFVLVVCYAVVVSFGLFAPRLKTTSLKTA"
     gene            1963..>2875
                     /locus_tag="VNN98_00655"
     CDS             1963..>2875
                     /locus_tag="VNN98_00655"
                     /inference="COORDINATES: protein motif:HMM:NF012472.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HWM60623.1"
                     /translation="MIALRPLGHTGLSVTELGFGTAPLGNLFRSLPEETARATLAAAQ
                     AGGFGYYDTAPFYGFGLSERRLGDALRGRKDVVLSTKVGRLLKPVPGPVDENIARHGY
                     ATPMPFEPVYDYSYDAVMRSFEASLQRLGLPSIDILYIHDIGRLTHGDENEARLAELT
                     RRGGLKALEELRATKVISGFGMGVNEIPACLEVMTHARLDVILLVGRYTLLEQNALDE
                     LFPRCEAAGTAIVVGGPYNSGILATGPKPGAYYNYSEAPKDILERVAGIEAVCKRHGI
                     GLIEAALQFPLLHPSVVSVIPGGQRPSE"
BASE COUNT          485 a          903 c          896 g          591 t
ORIGIN      
        1 cggcaccgcc atcctgtcgg agacgccgga aatctatggc gccgaacatc tgctgacccg
       61 ccgcgccgca cccgaggttg gcaaaaagct gatcgagcgc atccgctggt gggaggacta
      121 caccagccgc aatgccggca gcatgaacaa caatccatca cccggaaaca aagcgggcgg
      181 gttgaccacc atcctggaga aatcgctggg cgccgccgcc aagggcggca ccacccggct
      241 gaaggcggtg gtggaatatg ccgaacccgt gacggccaaa ggtttcgtgt tcatggatac
      301 accgggctac gatccggtct cggccaccgg ccaggtggcg ggcggtgcga atattctctg
      361 tttcaccacc gggcgcggct cagcctatgg ctgcaagccc acgccctcga tcaagctggc
      421 gaccaacacg cccgtctatg aacgcatgat cgacgacatg gatatcaatt gcggcgatgt
      481 gctggaaggt gtctccatcg ccgacaaggg ccaggagatt ttcgaccata tcctgaagat
      541 cgcctccggg atgcgcagca agtccgagaa gctgggttat ggcgacgccg aattcgtgcc
      601 ctggcaaatc ggcgcgacca tgtagcgtcg ccctcctttt tccgcttaac tggtggaaag
      661 cgcgggcgaa gacccgtttg cagggggtac gatgtccaag ctgccggttg tcgaaaaacg
      721 ttacgtcgtc gcttttgcac tgacttcgac tctgttcttc gcctggggtc tggcgtcgca
      781 gttcaacgac ctgctgctgc accatttcca gaaggcgctg gacctgacgc ggccgcaagc
      841 cagcctgacc cagttcgctt tctatatcgg ctatttctgc gcgccgttgc cggccgccat
      901 gatcatacgc cggttgggct acaagaaaac catcatcatc ggtctggcgc tgtacgccat
      961 cggcgccttc ctgttcgtgc cggcggccca tctgcgggtc tatgggatat tcctggcggc
     1021 gctttacatc atcgccatcg gtgcgggttt tctggaaacc agtgccaacc cctatatcgc
     1081 catcctgggc gccgccgaaa ccgcctcacc gcggctgaac ttcgcccagg ctttcaatgg
     1141 tgtcgccact gttctcggac cattggtggg tggttatgtg attttttccg gcgtcgaata
     1201 taccccggcg cagatggcgg cgatggggcc ggacgcggtg gatcattggc gcgcgcaaga
     1261 ggctgccgct gtcggtccac cctatctggt gctgggcatc ctgatggtgg tgatcgcatc
     1321 cgctattgcg atcacccgct atccaccgct gcgcgccgac gtcacgccgg aaacctcgcg
     1381 ctcgcccttt gccgtgctgg cccgcccacg cgttctctac gccgtgatcg cgcaattttt
     1441 ctatgtcggc gcccaggtcg gcacctggag tttgctggtg gatttcgcgc aggaggccgc
     1501 acatgtgccc gaacgcaccg gagcgcaggt ctatctggag gcgaccatga tcgctttctg
     1561 tgtcggccgt ttcgtcggcg cctggctgca gcggaccatc aacccgccgc gccagcttat
     1621 gctctatgcc ggctgcaaca tattgctgtg ctgcctggcg gcggtgatcg gcggaatccc
     1681 cagcatctgg gcgctggtgg cgaccagctt cttcatgtcg atcatgtttc ccaccatctt
     1741 cgcgctgggg cttgaagggt tggggcccga gaccgagttc gcctcctcct tcatcgtcat
     1801 ggcgatctgc ggcgccgcgg tgataccgcc tgtgatgacg ctgttcgcct cattcaccgg
     1861 cgccctgcat tggagcatgt tcgttctggt ggtttgctat gccgtggtgg tgagcttcgg
     1921 cctgttcgcg cccagactga agacaacaag tctgaaaacg gcatgatcgc gcttcgtcca
     1981 ctgggccata ctgggctctc ggtcaccgaa ctgggcttcg gcaccgcgcc gctgggcaat
     2041 ctgtttcgct ccttgccgga ggaaaccgcg cgcgcgactt tggcagcggc gcaagcgggc
     2101 ggcttcggct attacgacac cgcgcccttc tacggtttcg gcctgtcgga acgccggcta
     2161 ggagatgcgc ttcgcggacg caaggatgtc gtgctgtcca ccaaggtggg gcggctgctg
     2221 aagccagtgc ctggtccggt ggatgagaat atcgcgcgcc atggctatgc cacgcccatg
     2281 ccgtttgagc cggtctatga ttattcctat gacgcggtga tgcggtcctt cgaagccagc
     2341 ctgcagcggc tgggcctgcc ctccatcgac atactttata tccatgacat tggccggctg
     2401 acccatggcg acgaaaacga ggcgcggctg gccgaactga cccggcgcgg cggcctcaag
     2461 gcgctggagg aattgcgcgc caccaaggtc atttccggct tcggcatggg ggtgaatgaa
     2521 attcccgcct gcctggaagt gatgacccac gcccggctgg acgtgatcct gctggtgggg
     2581 cgctacactt tgctggagca gaatgcgctg gacgaactgt tcccgcgctg cgaggcggcg
     2641 ggcaccgcca tcgtggtggg cggcccctac aattccggca tcctggcgac aggaccgaag
     2701 cccggtgcct actacaatta ttcagaggcg ccgaaggaca ttcttgagcg ggtcgccggc
     2761 atcgaggctg tctgcaagcg ccatggcatc ggactgatcg aggcggcgct gcaattcccg
     2821 ctgttgcatc cgtcggtcgt gtcggtgatc cccggcggcc agcggccaag cgagg
//
LOCUS       DATMDK010000032         2231 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2301787,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000032 DATMDK010000000
VERSION     DATMDK010000032.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2231)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2231)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2231
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2301787"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            103..393
                     /locus_tag="VNN98_00660"
     CDS             103..393
                     /locus_tag="VNN98_00660"
                     /EC_number="5.4.99.5"
                     /inference="COORDINATES: protein motif:HMM:NF006691.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0046417 - chorismate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate mutase"
                     /protein_id="HWM60624.1"
                     /translation="MTHPELLRLRDSIDNIDAALIHMLAERFRCTQAVGEFKAAHNLP
                     PADPAREAAQIARLRQLAEDAKLDPDFAEKFLNFIVKEVIRHHEAIAKNKGA"
     gene            complement(524..2101)
                     /gene="serA"
                     /locus_tag="VNN98_00665"
     CDS             complement(524..2101)
                     /gene="serA"
                     /locus_tag="VNN98_00665"
                     /EC_number="1.1.1.95"
                     /inference="COORDINATES: protein motif:HMM:TIGR01327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004617 - phosphoglycerate dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0006564 - L-serine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate dehydrogenase"
                     /protein_id="HWM60625.1"
                     /translation="MPKVLIADKLSPAAVAIFKERGVEADVKTGLSKEELIKIVDQYD
                     GIAIRSATKLTADVLKAAKNLKVVGRAGIGVDNVDIPAATAAGVIVMNTPFGNSITTA
                     EHAISLMLALARELPAANASTQAGKWEKNRFMGVEITGKVLGLIGAGNIGSIVADRAK
                     GLKMRVIAYDPYLSQERANDLGIEKVELNDLLARADFITLHVPMTPETKNILSADAIT
                     KTKRGVRIINCARGGLIDEHALKAAIDNGHVAGAALDVFETEPAKENILFGNEKVVAT
                     PHLGASTTEAQENVALQVAEQISDYLLTGAITNALNMPSISASEAQKVRPWISLAEKL
                     GSFAGQLTGTSLTGVEIIYEGTPGMLNTRALTQAALAGLLKPMLAEVNMVNAPVIAKD
                     RGIKVSETRRDAQGIYEGYIKLVVNMGDSARRLAGTVFSDGRPRLIQIKDINLDAEFA
                     PHMLYIVNEDKPGFIGKLGTMLGDAKVNIANFTLGRSAPGQDAIALIEVDGPVPTAVA
                     DAVAKLPQVKHAKPLAF"
BASE COUNT          404 a          663 c          706 g          458 t
ORIGIN      
        1 gttcaccatg ctggtgaata aatccgtcca gggaactttg ctggcgcccg ccggcgcttt
       61 cgcttaaaca tattccgccc ggaaatgacc gaaaggcacg taatgaccca tccggaactg
      121 ctgcgtctgc gagatagcat cgacaatatc gatgccgcgc tgattcacat gctggccgaa
      181 cggtttcgct gcacccaggc ggtgggcgag ttcaaggcgg cccacaacct gccgcccgcc
      241 gatccggcgc gcgaggcggc gcagatcgcc cggctgcgcc agctggcgga agatgccaag
      301 ctggacccgg attttgcgga gaaattcctg aacttcatcg tgaaggaagt cattagacac
      361 cacgaggcga ttgcgaagaa taagggcgcc taaagcgcga ggtgtccctc ggcattccaa
      421 atactattca ttgtcattcc cgcgaacgcg ggaatccaac ttcacgctgc gctgctggat
      481 agaaagttgg atgcccgctt acgcgggcat gacaatttac ttcttaaaaa gctaaaggct
      541 tcgcgtgttt tacttgcggc agcttggcaa cagcgtctgc cacggccgtt ggcaccggac
      601 cgtctacctc aatcagggca atggcgtcct ggccgggggc gctgcggccc aaggtgaagt
      661 tggcgatatt gaccttggcg tcgcccagca tggtgcccag cttgccgatg aagcccggct
      721 tgtcctcgtt gacgatatag agcatgtgcg gcgcgaattc ggcgtccagg ttgatgtcct
      781 tgatctggat caggcgcggg cggccatcgg agaagacagt gccggccagg cggcgggccg
      841 agtcgcccat attcaccacc agcttgatat agccttcata gattccctga gcatcgcggc
      901 gggtctcgct gaccttgatg ccgcggtctt tggcgatcac cggggcgttg accatattga
      961 cctccgccag catgggcttg agcagtccgg ccagcgccgc ctgggtcagg gcgcgggtgt
     1021 tgagcatgcc gggagtgcct tcatagatga tctccacacc ggtcaggctg gtgccggtga
     1081 gctggcccgc gaaggagccc agcttttccg ccagggaaat ccaggggcgc accttctgcg
     1141 cctcgctggc cgagatcgac ggcatgttca gggcattggt gatggcgccg gtcagcagat
     1201 aatcggaaat ctgctcggcc acctgcagcg ccacattctc ctgcgcctcg gtggtggagg
     1261 cgcccagatg cggcgttgcc accactttct cgttgccgaa caggatattc tctttggccg
     1321 gttcggtctc gaacacatcc agcgccgcgc ccgcgacatg gccattgtcg atcgcggcct
     1381 tcaaggcgtg ctcgtcaatc aatccgccgc gggcgcagtt gatgatgcgc acgcccctct
     1441 tggtcttggt gatggcgtcg gcggacagga tgttcttggt ctccggcgtc atcggcacat
     1501 gcagggtaat gaaatcggcc cgggccagca gatcgttcaa ttccactttt tcgatgccca
     1561 gatcattggc gcgctcctgc gacagatagg gatcataggc gatcacccgc atcttgaggc
     1621 ctttggcgcg gtcggcgacg atgctgccga tattgccggc gccgatcagg cccagcacct
     1681 tgccggtgat ttccacaccc atgaagcggt tcttttccca cttgccggcc tgggttgagg
     1741 cattggcagc gggcagttcg cgcgccaagg ccagcatcag cgaaatggca tgttcggcgg
     1801 tggtgatgga attgccgaag ggcgtgttca tcacgatcac gcccgcggcg gtggcggcgg
     1861 gaatatcgac attgtccacg ccgatgccgg cgcggcccac caccttcaga ttcttcgccg
     1921 ccttcagcac gtcggccgtc agcttggtgg ccgagcggat ggcgatgccg tcatactgat
     1981 ccacaatctt gatcagctcc tccttggaca gaccggtttt cacatcggct tcgacgccgc
     2041 gctctttgaa gatggcgacg gcggcggggg acagtttgtc ggcgatcagg accttgggca
     2101 tggagcggtt ccttgtggga ctagttgaga gtgaggccgc cggggatgga tgcgcggcgt
     2161 tgataaaaag gcggcacctg cagcaaggcg ccggtcatac cggccgggct gcgccggtcg
     2221 atgcgttgga t
//
LOCUS       DATMDK010000033         3028 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2987729,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000033 DATMDK010000000
VERSION     DATMDK010000033.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3028)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3028)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3028
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2987729"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..830
                     /locus_tag="VNN98_00670"
     CDS             <1..830
                     /locus_tag="VNN98_00670"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HWM60626.1"
                     /translation="LKLLGEAGLVERFKEGSWVFCRAADRGTGAELGAAIAGLADPQA
                     QEADKARLAHVRQARANAAAAYFKSNAAEWERIRALHAPEKDVEQAITRHLTAAGIEN
                     FLDAGTGTGRMLELIAPHTKRAVGIDVSPDMLSIARDRLLRAGIQNAQVRLGDTYRLP
                     FPNGAAGAGFDVVLFHQVLHYLDDPGSAVAEAARVMAPGGRLLIADFAPHKEEFLRDE
                     FAHRRLGFSDREVESWFAGAGLANAGSETIAPQGAGEKLTVKLWLAAAKTKAKKEAA"
     gene            827..1726
                     /gene="metF"
                     /locus_tag="VNN98_00675"
     CDS             827..1726
                     /gene="metF"
                     /locus_tag="VNN98_00675"
                     /EC_number="1.5.1.20"
                     /inference="COORDINATES: protein motif:HMM:NF014296.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004489 - methylenetetrahydrofolate
                     reductase (NAD(P)H) activity [Evidence IEA];
                     GO_process: GO:0009086 - methionine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methylenetetrahydrofolate reductase [NAD(P)H]"
                     /protein_id="HWM60627.1"
                     /translation="MSLENLIANHTNSEMSPLQVSFEFSPPKTDEAEANLWTAIRRLE
                     PLAPSFVSVTYGAGGSTRERTHATVKRIVEETSLKPAAHLTCVAAPRGEIDDIVRGYW
                     EAGIRHIVALRGDMPGMSGAYAAHPDGYASTPELIAGIKKIAPFEVSVSFYPERHPDS
                     PSHGHDIELLKAKMDAGASRALGQFCFDNDLTARFRDDAARAGISIPIVPGIMPTTNF
                     NGVARMAAKTGASIPAWLTKAYEGLDDDVETRRIVAAAVLADQVQQLRVRGFDQFHFY
                     TLNQANLTYAACRILGIRPKELL"
     gene            1723..>3028
                     /locus_tag="VNN98_00680"
     CDS             1723..>3028
                     /locus_tag="VNN98_00680"
                     /inference="COORDINATES: protein motif:HMM:NF014615.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homocysteine S-methyltransferase family protein"
                     /protein_id="HWM60628.1"
                     /translation="MSFDRNARIVWMKQEAKKRLLLLDGSWGVMIQGFTLGEEDFRGQ
                     RFGNHPSELKGNNDLLTLTKPEIIRDIGRQYLEAGVDFIETNTFNSNFTSQEDYGLGH
                     LVGELNEAGARLARGLCDDYSSSGRPRLVAGVLGPANRTATISPDVNDPAFRNITFDQ
                     LRETYREATRGLIRGGSDVLMIETVFDTLNCKAAIFAIEEVFAETGMRLPVWISGTIT
                     DLSGRTLTGQTPEAFWHSVRHAKPFAVGLNCALGAKELRPYIADLAAACDTLVSAHPN
                     AGLPNEFGGYDESPETMSEMIGEFARSGLVNIVGGCCGTKPEHIKAFGEAIKDVPPRQ
                     IPQKPKYMRLSGLEPFTLTPDLNFINVGERTNITGSAKFRKLIAANDYEAALEVARSQ
                     VENGAQIIDINMDEGLIDSEAAMTRYVNMIAGEPDISKVPLMI"
BASE COUNT          583 a          940 c          954 g          551 t
ORIGIN      
        1 atctcaagct gctgggcgag gcggggctgg tggaacgctt caaggaaggc agctgggtat
       61 tctgccgcgc cgccgaccgg ggtaccggcg ccgagctggg cgcggcgatc gcgggcctgg
      121 ccgatccgca agcccaggaa gccgacaagg cgcgtttggc ccatgtgcgc caagcccgcg
      181 ccaatgcggc agcggcctat ttcaagtcca acgcggcgga gtgggagcgc atccgcgcct
      241 tgcatgcgcc ggaaaaagat gtcgaacagg cgatcacccg ccatctcacc gctgcgggga
      301 tcgagaattt cctggacgcc ggcaccggaa cggggcggat gctggaactg atcgcccccc
      361 ataccaagcg cgccgtgggc atcgatgtca gccccgatat gctttccatc gcccgcgacc
      421 ggctgctgcg cgccggtatc cagaatgcgc aggtccggct gggcgatacc tatcgcctgc
      481 cgttccccaa tggcgcggct ggcgccggct tcgacgtggt gctgtttcac caggtgctgc
      541 attacctgga cgatccgggc agtgcggtgg cggaagcggc gcgcgtcatg gcgccgggcg
      601 gacggctgct gatcgccgat ttcgcgcctc acaaggaaga atttctgcgc gacgaatttg
      661 cccatcgccg cttgggtttt tccgaccggg aagtggaaag ctggttcgca ggtgcaggcc
      721 tggccaatgc gggcagcgag accatcgcgc cgcagggtgc aggcgaaaaa ctcaccgtca
      781 agctgtggct ggccgcggca aaaacaaaag caaaaaaaga agccgcatga gcctggaaaa
      841 tcttatcgcc aatcacacca attctgaaat gagtcccttg caggtctcgt tcgaattctc
      901 gccgcccaag acggacgagg cggaagccaa tttgtggacc gcgatccggc ggttggagcc
      961 gctggcgcca tctttcgtgt cagtcaccta tggcgcgggc ggttcgaccc gcgagcgcac
     1021 ccacgccacc gtcaagcgca tcgtagaaga aacgagcttg aaaccggcag cgcatctcac
     1081 ctgcgtagcg gcgccccggg gcgaaatcga cgatatcgtg cgcggctatt gggaggcggg
     1141 tatccgccac attgtggcgc tgcgcggcga catgccgggg atgagcggag cctatgccgc
     1201 gcatccggac ggctatgctt cgacgcctga actgattgcg ggcatcaaga agatcgcgcc
     1261 cttcgaggtc agcgtctcct tctatcccga gcgccatccg gattcgccgt cgcatggtca
     1321 tgacatcgag cttttgaaag ccaagatgga cgccggcgcc agccgggcgc tgggccaatt
     1381 ttgcttcgac aacgacctga cggcgcggtt ccgcgacgat gcggcccggg ccgggatctc
     1441 cattcccatc gtgcccggca tcatgcccac caccaatttc aacggcgtgg cgcgcatggc
     1501 ggccaagacc ggcgcctcca ttcctgcctg gttgacgaaa gcttatgaag gactggatga
     1561 cgatgttgaa acccgccgta tcgtcgcagc tgcggtgctg gccgatcagg tgcagcagtt
     1621 gcgcgtgcgc ggcttcgatc aattccactt ctacactctc aaccaggcca acctgactta
     1681 tgcggcctgc cgcattctcg gtattcgtcc caaggaacta ttatgagttt tgatcgcaac
     1741 gcccgcatcg tttggatgaa gcaggaggcg aaaaagcgcc tgctgctgct ggacggctcc
     1801 tggggggtga tgatccaggg cttcacgctg ggcgaggagg attttagggg gcagcggttc
     1861 ggcaatcacc cttcggagct gaagggcaac aacgatcttc tgaccctgac caagccggag
     1921 atcatccggg atatcggccg ccaatatctg gaagccgggg tggatttcat cgagaccaac
     1981 accttcaatt ccaatttcac cagccaggaa gattatggct tgggccatct ggtcggcgag
     2041 ttgaacgagg ctggggcgcg gctggcgcgc ggcttgtgcg atgactattc cagcagcggg
     2101 cgcccgcggc tggtggccgg cgtgctgggc ccggccaatc gcaccgccac catctcgccc
     2161 gacgtcaacg atccggcctt ccgcaacatc accttcgatc agctgcgcga aacctatcgc
     2221 gaggcgacgc gcggcttgat ccggggcggc tcggacgttc tgatgatcga gacggtattc
     2281 gacaccttga actgcaaggc ggcgattttc gccatcgagg aagtcttcgc ggaaaccggc
     2341 atgcgcctgc cggtatggat ttctggcact atcaccgacc tttcaggccg caccttgacc
     2401 ggccagactc cggaagcctt ctggcattcg gtgcgccatg ccaagccctt tgccgtcggc
     2461 ctgaattgcg ccctgggcgc caaggaattg cgcccctata tcgccgacct ggcggcggcc
     2521 tgcgacacgt tggtgtcggc gcatcccaat gccggcctgc ccaacgaatt cggcggctat
     2581 gacgaatcgc cggagaccat gtccgagatg atcggcgagt tcgcccgctc cggcctggtc
     2641 aatattgtcg gcggttgttg cggcaccaag cccgagcata tcaaggcctt tggcgaggcg
     2701 atcaaggatg tgccgccgcg ccagattccg caaaagccca aatatatgcg cctgtcgggg
     2761 ctggagcctt tcaccctgac ccccgatttg aacttcatca atgtcggtga gcgcaccaac
     2821 atcaccggtt cggccaagtt ccgcaaactg atcgcggcca atgactatga ggcggcgctg
     2881 gaagtggcgc gcagccaggt ggagaacggc gcccagatca tcgacatcaa catggacgag
     2941 ggactgatcg attccgaagc ggcgatgacc cgctatgtca atatgatcgc gggcgagccg
     3001 gacatttcca aagtgccgct gatgatcg
//
LOCUS       DATMDK010000034         3742 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2531220,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000034 DATMDK010000000
VERSION     DATMDK010000034.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3742)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3742)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3742
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2531220"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..478)
                     /locus_tag="VNN98_00685"
     CDS             complement(<1..478)
                     /locus_tag="VNN98_00685"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM60629.1"
                     /translation="MKSFKAVIAVSILALSATSALAQTYGSWGDQSSQGAGTGSQILN
                     NQINLQNNWATLNASVDTVGGDVVAQGSAAGNMIDITTMNNTRVQNNQIVGPNSNIGS
                     EVNLDTSNVWGSVGIQNQVLCNGASVSTDPTLTQVKSNQECHATDPYSAINTNITNI"
     gene            complement(528..1631)
                     /gene="hfaB"
                     /locus_tag="VNN98_00690"
     CDS             complement(528..1631)
                     /gene="hfaB"
                     /locus_tag="VNN98_00690"
                     /inference="COORDINATES: protein motif:HMM:NF037935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="holdfast anchoring protein HfaB"
                     /protein_id="HWM60630.1"
                     /translation="MTRRARKHLIKPLVLMLAAVALEGCISPTPDSVGRYTSPIGGAP
                     VISNETPYSAALRCMGGFVRQRPVRIAVGQIADYTGKTEADGSGRKVTAGAALMAMSA
                     LNKAGVHMVERFDTSVAEMELKYANNKLIGDDQHPNPQAGDFRRILAGSIPGSDYYIV
                     GGITELNFNIRSENANGNGGGTATNATTGTAAGSLYVMNVGLDMRLVNTNTLEVADVI
                     SYQKQIIGRQVSAGVFDFLGTNFFDVSVGESALEPIQLAVRSVIERATLEMITRIYRA
                     PGQSCAIPLGTNDDPLRDAGEAPYYPVQAAYGAPYPQPYGPQPYGPAPYAPQPAYYAP
                     PAYQASYSDAGRNSPYRSYEGGNPGPLGLRGGL"
     gene            complement(1651..2067)
                     /gene="hfaA"
                     /locus_tag="VNN98_00695"
     CDS             complement(1651..2067)
                     /gene="hfaA"
                     /locus_tag="VNN98_00695"
                     /inference="COORDINATES: protein motif:HMM:NF037934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="holdfast anchoring protein HfaA"
                     /protein_id="HWM60631.1"
                     /translation="MSKFKTRLQTLIALAALALTATAASSEAWAGDWTNASMYNGYGA
                     ATQNQASGYSLRDANGNLTMVNGQVTSAQYSQGSGAQYAGGGVGTSGAGSAYGQATAI
                     GNQLSVVVLGSHNTTIIDSQQTNNGNQTATADLNQH"
     gene            2402..3127
                     /locus_tag="VNN98_00700"
     CDS             2402..3127
                     /locus_tag="VNN98_00700"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: protein motif:HMM:NF013827.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rhomboid family intramembrane serine protease"
                     /protein_id="HWM60632.1"
                     /translation="MAFLQSQPPRQPFFRAPPIVLWLIGGLAAAHAARVMAPESRSQD
                     LIYDYALVPARYSRAFLESHMADPGTVWERAVPFISYMGLHGSWTHLIINCLWLLAFG
                     PIVARRFGAVLFLVFFIVCGLAGAGAYLAFNWASPVPVVGASGAISGLMAAGLRMLPG
                     QSPWAVPGEAPLAPIFSRQILVFTLVWGAINLLAGVTGIGVGGESGMVAWQAHLGGFV
                     AGLLLCQPFDRLRPRTVGAPLGN"
     gene            3230..3619
                     /locus_tag="VNN98_00705"
     CDS             3230..3619
                     /locus_tag="VNN98_00705"
                     /inference="COORDINATES: protein motif:HMM:NF015898.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0045892 - negative regulation of
                     DNA-templated transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="BlaI/MecI/CopY family transcriptional regulator"
                     /protein_id="HWM60633.1"
                     /translation="MRLPKLSKLELQIMDVLWSGGPSAIREIQESFGPKNRPAYTTVQ
                     TMVYRLEAKKALRRTRKIGNAHIFEAVISRDAAKARLVDDFLSLFGGRMQPVMAQLIE
                     AGNLSPKDVADAEKLLRELSARKKKDA"
BASE COUNT          591 a         1111 c         1282 g          758 t
ORIGIN      
        1 cgatgttggt gatgttggtg ttgatcgccg aataggggtc cgtcgcatgg cattcctggt
       61 tcgacttgac ctgcgtcagg gtgggatcgg tggagacgct ggcgccgttg cacagcacct
      121 ggttctggat accgacgctg ccccagacat tgctggtgtc gagattgact tccgagccga
      181 tgttggaatt cggtcccacg atctggttgt tctgcaccct ggtgttattc atggtggtga
      241 tgtcgatcat gttgccggcg gcagagcctt gcgccaccac gtcgccgccc actgtgtcca
      301 cactggcgtt cagggtggcc cagttatttt gcaggttgat ctggttgttg aggatctggc
      361 tgccggtgcc cgcgccttgc gaggactgat cgccccagct gccataggtc tgggccaagg
      421 ccgaggtggc ggacagagcg aggatggaaa cggcgataac tgctttgaag gacttcatgg
      481 tggggctcct gagtgtttgg ttgatgtctg ttgaaagagg ctaggggtta gagtccgccg
      541 cgcaggccga gtggtcccgg attgccgccc tcatagctgc gataggggct gttgcggcca
      601 gcatcgctgt aggacgcctg gtaagcgggc ggggcgtaat aggcgggctg cggcgcgtaa
      661 ggcgcaggcc cgtaaggctg ggggccgtaa ggctgcggat acggcgcgcc ataggccgcc
      721 tgcaccggat agtaaggcgc ttcgcccgcg tcacgcagcg gatcgtcgtt ggtgcccagg
      781 ggaatggcgc aggactggcc aggggcgcga tagatgcggg tgatcatttc cagggtggcg
      841 cgctcgatca ccgaacgcac tgccagctgg atcggctcaa gggcgctttc cccgacgctg
      901 acgtcgaaga agttggtgcc caggaagtcg aacacgccgg ccgaaacctg gcggccgatg
      961 atctgcttct gataggaaat cacgtcggcc acttccagcg tgttggtgtt gaccaggcgc
     1021 atgtccaggc cgacattcat cacataaaga ctgcccgcgg cggtgccggt ggtggcgttg
     1081 gtggcggtgc cgccgccatt gccgttggca ttctcgctgc ggatgttgaa gttcagttcg
     1141 gtgatgccgc ccacgatgta atagtccgaa cccgggatcg agccggccag gatcctgcgg
     1201 aagtcgccgg cctggggatt gggatgctgg tcgtcgccga tcagcttgtt gttggcatat
     1261 ttcagttcca tttcggccac cgatgtgtcg aaacgctcga ccatatgcac gccggccttg
     1321 ttcaaggcgc tcatcgccat cagggcggcg ccggcggtga ccttgcggcc cgagccgtcg
     1381 gcttcggtct tgccggtata atcggcgatc tggccgaccg cgatgcggac cgggcgctgg
     1441 cggacaaaac cgcccatgca gcgcagggcc gcggaataag gagtctcgtt ggagatcacc
     1501 ggcgcaccgc cgatcgggga ggtgtaacgg ccgaccgagt cgggcgtggg gctgatgcag
     1561 ccttccagcg cgacggctgc cagcataagg accagcggct tgatcaggtg tttacgggcg
     1621 cggcgagtca tgggaggggc ttcccttacc ttagtgctgg ttcagatcgg cggtcgccgt
     1681 ctgattgcca ttgttggtct gttgcgagtc gatgatcgtg gtgttgtggc ttcccaggac
     1741 gaccaccgag agctgattgc cgatcgcggt ggcctgtccg taagctgacc ctgcaccgct
     1801 tgtgccaacg ccgccgccgg catattgggc gccgctgcct tggctgtact gggccgaggt
     1861 cacctggcca ttcaccatgg tcaggttgcc gttggcgtcg cgcagggaat agccggacgc
     1921 ctggttctgc gtggcggcgc catagccgtt gtacatggag gcgttggtcc aatcgccggc
     1981 ccaagcctct gaagaggccg cggtggcggt caaggcgagg gcggccaggg caatgagcgt
     2041 ctgcaaacgg gtcttgaact tggacatcga ggcgtctttc caattctgtt gacccgaaca
     2101 gagcaacgcc catgccagtc cttaatcgcc gttaggcttt ggccgtgccg ccccggcaca
     2161 gcgcacgcga aaaagccgcc aaaagagcgg gtttttcggc tccacagcga ggggggcttc
     2221 ggcggctgag gccgcccacg ccggctgcgt ctcaaaaaaa gccaggtgaa agagggcgaa
     2281 gaagggtgtc tcgcggcgga tggggcacag catacctgtt tcgtttcgga acatttttgg
     2341 ccgcagccgg acccgcggcc gcctgccttg gcgcggcacc cgaagcgccc tagataggcg
     2401 gatggctttc ctgcaatccc agcctccgcg ccagcctttc ttccgtgcgc cgcccattgt
     2461 gctgtggctg atcggcggcc tggcggcggc gcatgccgcg cgggtgatgg cgcccgaaag
     2521 ccgctcccag gacctgatct atgactatgc cctggttccg gcgcgctaca gccgcgcctt
     2581 cctggaaagc catatggccg atcctggcac agtctgggaa cgcgccgttc ccttcatctc
     2641 ctatatgggg ctgcatggca gctggaccca tctgatcatt aactgtctct ggctgctggc
     2701 cttcggcccc atcgtggcgc ggcgctttgg ggcggtgctg ttccttgtct tctttattgt
     2761 ctgcggtctg gcgggcgccg gcgcctatct ggccttcaac tgggccagcc cggtgccggt
     2821 ggtgggcgcc tcgggtgcca tctccggctt gatggcggcg ggcctcagaa tgctgcccgg
     2881 ccagagcccc tgggcggtgc ccggcgaagc cccgctggcg cccatcttct cccgccagat
     2941 cctggtgttc actttggtgt ggggggcgat caacctgctg gcgggcgtga cgggcatcgg
     3001 cgtgggcggc gaaagcggga tggttgcctg gcaggcgcat ctgggcggct ttgtcgccgg
     3061 gctgctgctg tgccagccat tcgaccggct gcgcccgcgc accgtaggtg cgccattggg
     3121 taactaatgc cgtcggtgtg ccattggacc attagtggtg aaccattggc ggcttgccgc
     3181 aacgccgccg caagcatagg atttccgacg cctgtagtag gatgcgccga tgcggctgcc
     3241 caagttaagc aagctggaac tgcagatcat ggacgtgttg tggagcggcg gaccctccgc
     3301 catccgcgag atccaggaaa gcttcggccc caagaaccga ccggcctaca ccacggtgca
     3361 gaccatggtg taccggctgg aagccaagaa ggcgctgcgc cgcacccgca agatcggcaa
     3421 tgctcatatc ttcgaagcgg tgatttcccg cgatgccgcc aaagcccggc tggtggatga
     3481 tttcctctcg ctgttcggcg gccggatgca gcccgtaatg gcccagctga tcgaggccgg
     3541 caatctgtcc cccaaggacg tggccgacgc cgaaaaactg ctgcgcgagc tttccgcccg
     3601 gaagaagaag gacgcatgac tctgggcctg ctggatcatc tctggcagtc cagcttgttc
     3661 gcgggcgcgg cggcgctgct taccttaacc ttgacccgta acggcgcggg gctgcgtttc
     3721 tggctgtggt tcgcggcttc gg
//
LOCUS       DATMDK010000035         2168 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2072658,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000035 DATMDK010000000
VERSION     DATMDK010000035.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2168)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2168)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2168
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2072658"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(185..1201)
                     /locus_tag="VNN98_00710"
     CDS             complement(185..1201)
                     /locus_tag="VNN98_00710"
                     /inference="COORDINATES: protein motif:HMM:TIGR02276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM60634.1"
                     /translation="MFRKILVGLALCAVAAGAQAATRPILYVANSQGDDITVIDVPTQ
                     KVLATIKVGPIVHGVCAQGDGRKAFATIESEHSLKVIDTKTNTVTDTIALGGQPNECA
                     ATTDGHYVVVPLLAPANSAVIVDMVQKKIVKSLELRHPHNCFTPEGGSNTIVYCEERD
                     AFRINRIDLTKMDYTNMVKVAGDPRPFIVTADEKTLYTALSGLHGVAVIDIPGKTMSQ
                     IALPPMPWMSCKVEPPNTPVHGLALTVDGKKLWITSVADAGLYVYDIATKKLSKKITV
                     GECPNWLSMSKDGKYAAVSNADSDDASILDAKRETEIARIKVGKAPKRLLVIEVPQDQ
                     LTEK"
     gene            1403..>2168
                     /locus_tag="VNN98_00715"
     CDS             1403..>2168
                     /locus_tag="VNN98_00715"
                     /EC_number="1.4.99.-"
                     /inference="COORDINATES: protein motif:HMM:NF013434.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008718 - D-amino-acid dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0019478 - D-amino acid catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-amino acid dehydrogenase"
                     /protein_id="HWM60635.1"
                     /translation="MKVVVLGGGVIGVSTAYYLARAGHQVTVVERQSGAGLETSFANA
                     GEISPGYSAPWAAPGLPLKALKWLFMKRRPLVIRPNLDPAMAIWGLRLLRNCTTARYD
                     LNKSRMLKLAQYSRACLETLRAETSIRYDERTQGTLQLFRTQKQVDGAAADIAILDRF
                     NVRYELLDKDGCAQAEPALARVKDKIAGGLRLPDDETGDCFLFTNALAAMAQALGVAF
                     RYDTSVKQLRHSGGRITGVQVQHGAAQEILTADIYVL"
BASE COUNT          386 a          671 c          663 g          448 t
ORIGIN      
        1 gccgggatcg gagacgaagc caggcgtctt ggccgaaacc gatttgttgt agacgccggt
       61 attggcatag agccggtcca ggataccttg atcctttttt atcacatcgg cagccagcgc
      121 ggcatcagat gccagcatcg ctgccagcag aatcgcaaat ctgcgcatcc ccaatttccc
      181 tattttattt ttctgtcagt tgatcctgcg gtacttcgat caccagcagg cgcttgggcg
      241 ccttgccgac cttgatacgg gcgatttcgg tttcgcgctt ggcatccagg atcgaggcat
      301 cgtcgctgtc ggcattgctg acggcggcat atttgccgtc cttggacatg ctgagccagt
      361 tggggcattc gcccaccgtg atcttcttgc tcagcttctt ggtagcgatg tcatagacat
      421 aaagaccagc atccgccacc gacgtgatcc acagcttctt gccgtcgacc gtcaaagcca
      481 ggccatgcac aggcgtgttg ggcggctcga ccttacagct catccagggc atgggcggca
      541 gcgcgatctg cgacatggtc ttgcccggaa tgtcgatcac cgccacgcca tgcaggccgc
      601 tgagcgcggt ataaagcgtc ttctcgtcgg cggtgacgat gaaagggcgc ggatcgcccg
      661 ccaccttcac catattggta tagtccatct tggtcagatc gatgcggttg atgcggaagg
      721 catcgcgctc ctcacaatag acgatggtgt tgctgccgcc ttccggggtg aagcaattgt
      781 ggggatggcg cagttccaaa ctcttgacga tcttcttctg caccatgtcc acgatcacgg
      841 cgctgttggc gggcgccagc agcggcacca cgacataatg accgtcagtg gtggcggcgc
      901 attcattggg ctggccgccc agcgcaatcg tatcggtcac cgtgttggtc ttggtgtcga
      961 tcaccttcag cgaatgttcg gattcgatgg tggcaaaggc cttgcggccg tcgccttgcg
     1021 cgcacacacc atgcacgatc ggccccacct tgatggtggc gaggaccttc tgggtgggca
     1081 catcgatgac ggtgatgtcg tcgccctggc tgttggcgac atagaggatg gggcgggtgg
     1141 ccgcttgcgc gcctgccgct acggcgcaga gcgccaaacc gaccagaatt ttcctgaaca
     1201 tgccgtttct ccggttttcc ccttcttagc cgaagggccc gcatggagcc agcttcccgg
     1261 ggccgacttt gtcgccggac agcgcctttt cctggttttt gctgcgctgc gccgcggcaa
     1321 aagcggccac ccgcgcgcaa cgcatggcta tgaggcttta agtccagtgg atttcgcttt
     1381 tgggcgcgga tacagatttg tcatgaaagt ggttgtcctt ggcggcggcg tgatcggcgt
     1441 ttccaccgct tattatctcg cccgcgccgg ccaccaggtc acggtggtgg agcgtcagtc
     1501 cggcgccggc ctggagacaa gctttgccaa tgcgggcgag atctcgccgg gctattcggc
     1561 gccctgggcc gcacccggct tgccgctcaa ggccctgaaa tggcttttca tgaagcggcg
     1621 gccgctggtc atccggccaa acctggaccc ggccatggcg atctggggcc tgcggctttt
     1681 gcgaaactgc accaccgcgc gctacgacct gaacaaaagc cgcatgctga agctggcgca
     1741 atacagccgc gcctgcctgg aaacactgcg ggccgagacc agcattcgct atgacgaacg
     1801 aacgcagggc accctgcagc tgttccgcac ccaaaagcag gtggacggcg cggcggcgga
     1861 catcgccatc ctggaccggt ttaatgtccg ctatgagctg ctcgacaagg atggctgcgc
     1921 ccaggccgaa cccgccttgg cgcgggtcaa agacaaaatc gccggcgggc tgcgattgcc
     1981 ggacgatgag accggcgact gtttcctgtt caccaacgcg ctcgccgcca tggcgcaagc
     2041 gctgggcgtg gcgttccgct acgacaccag cgtcaaacaa cttcgccact ccggcggccg
     2101 catcaccggc gtgcaggtcc agcacggcgc ggcgcaggaa atcctcacgg cggacatcta
     2161 tgttctgg
//
LOCUS       DATMDK010000036         2237 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1615386,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000036 DATMDK010000000
VERSION     DATMDK010000036.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2237)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2237)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2237
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1615386"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..721)
                     /locus_tag="VNN98_00720"
     CDS             complement(<1..721)
                     /locus_tag="VNN98_00720"
                     /inference="COORDINATES: protein motif:HMM:NF024753.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-binding-like beta-propeller repeat protein"
                     /protein_id="HWM60636.1"
                     /translation="MTCAGTALAQSPAPLNGTTISPHPLQSYAPVRAAVLTKPDPADW
                     IMMRGNYQGWGYSTLKQIDKTNVKGLQLVWARTMEAGINEATPIVHNGVMFLGNPNDV
                     VQAIDAASGELLWQYRRNLPPLQAFRGNFWGQRKRSIFLYDDKLYTVTKDNFLVALDA
                     KTGKELWEINRGGDLYATNTTGPIVVNGVVIAGSNCQEAPFGCFVTGNDAATGKELWR
                     NNVIPKKGEPGDETWGGVPFEQ"
     gene            complement(843..>2237)
                     /locus_tag="VNN98_00725"
     CDS             complement(843..>2237)
                     /locus_tag="VNN98_00725"
                     /inference="COORDINATES: protein motif:HMM:NF012398.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HWM60637.1"
                     /translation="EAKSPNQDLEVIDKYTGKVATRVALADAAAIDAGITACVEAAEP
                     MARMAAYERQDVLAHCVTRFQERFEELAFALCIEAGKPIKDSRGEVSRLIDTFRIAAE
                     ESVRILGEVQPLDIAPRAKGYLGIWKRVPIGPCSFVSPFNFPLNLAAHKIAPALAVGC
                     PFVMKPASRTPLGAIIIGEVLAETKLPKGAFSILPATRHGSDLFTTDERLKLLSFTGS
                     PDVGWALKAKAGKKKVVLELGGNAAVVVDADADLDDAVDRITFGAFYQSGQSCIGVQR
                     IFIHESIYETLKKKLVDRAGALVCGDPRNENTFIGPMIDVKEAERLESWIKEAAASGA
                     TILCGGKREGAMLQATLLENVGKSTKLNCEEAFGPVATLSKFSDFEAVLDQVNDSKFG
                     LQAGIFTRDIFKALRAWDKLEVGGVVIGDVPSYRVDNMPYGGVKDSGLGREGVRFAME
                     DMTEIRNLVIRNRG"
BASE COUNT          386 a          694 c          697 g          460 t
ORIGIN      
        1 gttgctcgaa cggcacgccg ccccaggtct cgtcgcccgg ctcgcctttc ttggggatca
       61 cattgttgcg ccacaattcc ttgccggtcg ccgcgtcatt gccggtgacg aagcagccga
      121 atggcgcttc ctggcaattg ctgccggcga tgaccacgcc gttcaccacg atgggcccgg
      181 tggtgttggt ggcatagaga tcgccgccgc gattgatctc ccacaattct ttgccggtct
      241 tggcatccag cgccaccagg aaattgtcct tggtcacggt gtagagcttg tcatcataga
      301 ggaagatgct gcgtttgcgc tggccccaga aattgccccg gaaggcttgg agcggcggca
      361 ggttgcggcg atattgccag agcagttcgc cgctggcggc gtcgatcgcc tggaccacat
      421 cgttgggatt gcccaggaac atcacgccgt tatgcacgat gggggtggcc tcgttgatgc
      481 ccgcttccat ggtgcgggcc cagaccagct gcaggccttt gacattggtc ttgtcgatct
      541 gtttcagggt ggaataaccc cagccctgat agttgccgcg catcatgatc cagtcggcgg
      601 gatcgggttt ggtcagcacg gcggcgcgca ccggcgcata actctgcagc ggatggggag
      661 aaatcgtcgt gccgttgagc ggcgcgggag actgcgccag ggcggtgccc gcgcatgtca
      721 tcagcaaggc aagggttagt tttcctcggc gcatcgtttc gtccccattt cgcgcgcccg
      781 ttatgattgg gcgcgttctg ttggggcaat gatgccgggt ttttctgccg ctggctatgg
      841 gttcagccgc ggttgcggat taccaagttg cggatttcgg tcatgtcttc catggcaaaa
      901 cgcacgcctt cgcggcccag accggaatcc ttgaccccgc catagggcat gttgtccaca
      961 cgataggagg gcacgtcgcc gatcaccacg ccgcccactt ccaatttgtc ccaggcgcgc
     1021 agggccttga aaatgtcacg ggtgaagatg ccggcctgca agccgaattt ggaatcattg
     1081 acctgatcca gcacagcctc gaagtcgctg aactttgaca aggtggcgac gggcccgaaa
     1141 gcttcctcgc aattcagttt ggtggacttg ccgacattct ccagcaaggt cgcctggagc
     1201 atggcgccct cgcgcttgcc gccgcacagg atagttgcgc cgcttgcggc ggcctccttg
     1261 atccaactct ccagccgttc ggcttccttc acatcgatca tagggccgat gaaggtgttc
     1321 tcgttgcggg gatcgccgca gaccagggca ccggcgcggt ccaccagctt ctttttcaac
     1381 gtctcataga tcgactcatg gataaagatg cgctgcaccc cgatgcagga ctggcccgac
     1441 tggtagaaag cgccgaaggt gatgcggtct accgcgtcgt ccagatcagc atcggcgtcc
     1501 accaccacgg cggcattgcc gcccagttcc agcaccactt tcttcttgcc ggccttggcc
     1561 ttcagcgccc agcccacatc gggtgagccg gtaaaggaga gcagcttcag ccgctcatcg
     1621 gtggtgaaga ggtcgctgcc atgccgggtg gcgggcagga tggagaaggc gcccttgggc
     1681 agcttggtct cggccaatac ctcgccgatg atgatggcgc ccagcggcgt gcgcgaggcg
     1741 ggcttcatca caaagggaca gcccactgcc aaagccggcg caattttgtg cgccgccagg
     1801 ttgagcggga agttgaaagg cgagacgaag gagcaaggcc cgatcggcac ccgcttccag
     1861 atgccgagat accccttggc gcgcggcgcg atgtccagcg gctggacttc gcccagaatg
     1921 cgcaccgatt cttccgctgc gatgcggaag gtgtcgatca gccggctgac ttcgcctctg
     1981 gagtccttga tcggtttgcc cgcctcgatg cacagggcaa aggccagttc ctcgaagcgt
     2041 tcctggaagc gcgtcacgca atgggccagc acgtcctgcc gttcataggc cgccatccgg
     2101 gccatcggct ccgccgcttc gacgcaggcg gtgatgccgg cgtcgatcgc cgccgcatcg
     2161 gccagcgcca cccgggtcgc cactttcccg gtatatttgt cgatgacctc caaatcctga
     2221 ttgggggatt tggcttc
//
LOCUS       DATMDK010000037         2981 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1616644,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000037 DATMDK010000000
VERSION     DATMDK010000037.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2981)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2981)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2981
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1616644"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1236
                     /locus_tag="VNN98_00730"
     CDS             <1..1236
                     /locus_tag="VNN98_00730"
                     /inference="COORDINATES: protein motif:HMM:NF024910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="APC family permease"
                     /protein_id="HWM60638.1"
                     /translation="SVVAAGFPDATWILLAWLGGGLFVAIDAMPTVELGAAIPLAGGP
                     YSIIARAIGPRSGFLIGWADWCQLTVSTGFITVAFGEYVHRLGLLPGLTAGQIAIALV
                     AGCCLVNWIGARAGGAAGNIGSALKALGLVVLVAALFGGRGTSAAVVPPPPAFTWAAA
                     MIALRAIYGAYGGWQAAIYFSEEVNAPERNVARATFVGIAVITTLYLLVNAAVLHVLP
                     IGLLVQSKLAAADAARIVLGESSGIIVTALAILCVASLANIQIMELTRTNYAMARAGR
                     LPPALAMVSASGTPRAALLVGCIATGLIIAAADSLKGQLYEILLDLYAPFVMIILLSF
                     SIAVFRLRRAEPDLPRPWKMPLFPLPALVSMALNAALLLLFLVSDWKTGIWSAVLLAC
                     AVPLYWLGKSRWKEKAAPG"
     gene            complement(1263..1631)
                     /locus_tag="VNN98_00735"
     CDS             complement(1263..1631)
                     /locus_tag="VNN98_00735"
                     /inference="COORDINATES: protein motif:HMM:NF023204.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RcnB family protein"
                     /protein_id="HWM60639.1"
                     /translation="MKRLLIATTALTLLLAPISAAFAQDRDNNRHDDNRGGNSMMMQG
                     RDNGRQDNYRGNNGQHRGWYKGGRIERNDWDRGQRVNDYRRYHLQRPPRGYEWRRVDN
                     NYILAAAATGLIAGLVLANH"
     gene            1840..2742
                     /locus_tag="VNN98_00740"
     CDS             1840..2742
                     /locus_tag="VNN98_00740"
                     /inference="COORDINATES: protein motif:HMM:NF013088.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HWM60640.1"
                     /translation="MSARNWALLLLLSLLWGSSFFFYKVLVAVLPPVTVVLGRVGIAA
                     VALNLWLLAQGTVMPLSPKLWLRFLVLGLLNNVVPFVLIAWGETRITSGMASILNATT
                     PIFMVVVTHFLTQDEKLTAGKVVGIAFGFAGTAVLVGPDAFAGGSQVWGELAVVAASC
                     VYAFAGVYSRRFTGLPPLQAATGQITGGAIILLPLSLLIDKPWTFALPGWEVWGSFLA
                     IALLNTAFAYFIYYKMLASAGVTFISLCTFIIPPLALVLGVAVLHESITLNALIGMVI
                     IALGLVAIDGRIIKSLRGRPSTVD"
     gene            complement(2713..>2981)
                     /locus_tag="VNN98_00745"
     CDS             complement(2713..>2981)
                     /locus_tag="VNN98_00745"
                     /inference="COORDINATES: protein motif:HMM:NF024950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HWM60641.1"
                     /translation="TATFGITSNAICPGYVWTPLVERQIPDTMAARGLTREQVINDVL
                     LTAQPTKQFVTVDEIAALALYLAGDMARSITGAIISIDGGWTAA"
BASE COUNT          430 a          910 c          991 g          650 t
ORIGIN      
        1 tccgtggtgg cggcgggctt tcccgacgca acatggatat tgctggcctg gctgggcggc
       61 gggctgttcg tcgccattga tgccatgccg accgtggagc tgggcgcggc gattccgctg
      121 gcgggcgggc cttactccat catcgcccgc gccatcggtc cgcgcagcgg ctttctgatc
      181 ggctgggccg attggtgcca gctcacggtc tccaccggct tcatcaccgt ggcgttcggc
      241 gaatatgtcc atcgcctggg cctgctgccg ggattgacgg cggggcagat cgccatcgcg
      301 ctggtggcag gctgctgcct ggtaaactgg attggtgcac gcgcgggcgg cgcggcgggg
      361 aatatcggca gcgctttgaa ggcattgggc ctggtggtgc tggtggccgc cctgttcggc
      421 ggacgcggta catccgcggc cgtcgtgccg cccccaccgg cttttacctg ggccgccgcc
      481 atgatcgcct tgcgcgccat ttatggcgcc tatggcggct ggcaggcggc gatctatttt
      541 tcagaagaag tgaacgcacc cgagcgcaat gttgcccgcg ccactttcgt cggtattgcc
      601 gtgatcacga cactctatct gctggtcaat gccgcggtgc tgcatgtgct gcccatcggg
      661 ctgctggtgc aatccaagct ggcggcggcg gacgcggcca ggatcgtgct cggcgaatcc
      721 agcggcatca tcgtcaccgc gctggccatc ctgtgcgtgg cgagcttggc caacatccag
      781 atcatggaat tgacccgcac caattatgcc atggcgcggg ccggccgcct gccgccggcg
      841 ctggccatgg tgtccgccag cggcacgccg cgcgcggccc tgctggtggg atgcatcgcc
      901 accgggctga tcatcgccgc agccgacagc ctcaagggcc agctctatga gatcctgctg
      961 gatctctacg cgccctttgt gatgatcatc ctgctcagct tcagtatcgc cgtcttccgc
     1021 ctgcgccgtg ccgagcccga tctgccgcgg ccctggaaga tgccgctgtt cccgctgccg
     1081 gcgctggtca gcatggcgct caacgccgcc ctgctgctgc tgttcctggt atcggactgg
     1141 aagaccggca tctggtcggc ggtgctgctg gcctgcgccg tcccgcttta ttggttggga
     1201 aaatccaggt ggaaagaaaa agcggcgccg ggttagggcg ccgctttctt tattcaaaac
     1261 cgttagtggt ttgccagcac caggccggca atcaggccgg tcgcggcggc ggcgaggatg
     1321 taattgttgt ccacccggcg ccattcataa ccgcgcggcg ggcgctgcag gtgatagcgg
     1381 cgatagtcat tgacccgctg gccgcgatcc cagtcattgc gctcgatacg gccgcccttg
     1441 taccagccgc gatgctggcc attgttgccg cgataattgt cctggcggcc gttgtcccgg
     1501 ccctgcatca tcatgctgtt gccgccacga ttgtcgtcat gacggttgtt gtcccggtcc
     1561 tgcgcgaagg cggcgctgat cggggcgagc agcagggtca gggcagtggt ggcgataaga
     1621 aggcgtttca tgggtctttc cttttctatc cggtgcgtta cacacaggac attgagactt
     1681 tccccgtgaa ccttatctga acagtttgtg gcggaattaa tatggttgtc gcaaagtgtg
     1741 ccggcccatg tctttttcgc gcaactgccg gccgattcaa acacgcaaaa cgggaggcgc
     1801 cggcagcgcg actctgttga tatgacgcgg gaggcggcga tgagcgcacg caattgggca
     1861 ttgctgttgc tgctgtcgct gctgtggggc agctccttct ttttttacaa ggtgttggtg
     1921 gcggtgctgc cgcctgtgac ggtggtgctg gggcgggtgg ggatcgccgc tgtcgcgctc
     1981 aatctgtggc tgctggcgca aggcacggtg atgccgctgt cgcccaagct gtggctgcgc
     2041 ttcctggtgt tggggctgct gaacaatgtg gtcccctttg tgctgatagc ctggggcgag
     2101 acccgcatca ccagcggcat ggcctcgatc ctcaacgcca ccacgccgat cttcatggtg
     2161 gtggtgacgc attttttgac ccaggacgaa aaactgacgg cgggcaaggt ggtgggtatc
     2221 gcctttggct tcgccggcac ggcggtgctg gtcggtccgg acgcttttgc cggtggcagc
     2281 caggtgtggg gcgaactcgc ggtggtggcg gcgtcctgcg tctatgcctt tgccggcgtc
     2341 tacagccgcc gctttaccgg cttgccgccg ttgcaggcgg cgaccgggca gatcaccggc
     2401 ggcgccatca tcctgctgcc gctgtcgctg ctgatagata agccctggac ctttgcgttg
     2461 ccggggtggg aggtctgggg atcgttcctg gccattgcgc tgctcaacac cgccttcgcc
     2521 tacttcatct attacaagat gctggcgagt gccggcgtta ccttcatctc gctctgcacc
     2581 ttcattatcc cgcctttggc actggtgctg ggcgtggcgg ttctgcacga aagcatcacg
     2641 ctgaatgcgc tgatcggcat ggtcatcatc gcgctggggc tggtggcgat tgacgggcgc
     2701 attattaaat ccttacgcgg ccgtccatcc accgtcgatt gaaataatcg cgccggtgat
     2761 ggagcgcgcc atatcgccgg ccagatacag cgccagggcg gcgatctcgt ccaccgtgac
     2821 gaactgcttg gtgggctgcg ccgtcagcaa cacgtcattg atcacctgct cgcgcgtcaa
     2881 tccgcgcgcc gccatggtgt cggggatctg ccgttccacc agcggcgtcc agacatagcc
     2941 ggggcagatg gcgttggagg taatgccgaa ggttgcggtt t
//
LOCUS       DATMDK010000038         3661 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1392269,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000038 DATMDK010000000
VERSION     DATMDK010000038.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3661)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3661)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3661
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1392269"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..608
                     /locus_tag="VNN98_00750"
     CDS             <1..608
                     /locus_tag="VNN98_00750"
                     /inference="COORDINATES: protein motif:HMM:NF017050.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="GMC family oxidoreductase"
                     /protein_id="HWM60642.1"
                     /translation="MRAAFSPTADFLKAKNVAGSLTTVENAIELDDIGKAAVITTALA
                     LGVDASGAKAYLLGCGMELAPDPDRRLTLTGEKDALGLPRLKLDMRIADSDFALYRQT
                     LAELGRQLLASKAGMLRLNYSHREQWLTAMDWGNHHMGTTRMSSDPKQGVVNADSLVH
                     GVGNLYVAGSSVFPTYGSSNPTLNLIALTLRLGDHLKKVMA"
     gene            605..946
                     /locus_tag="VNN98_00755"
     CDS             605..946
                     /locus_tag="VNN98_00755"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM60643.1"
                     /translation="MKRRAMIAGLVAASVAVAAGLHRFTNLFVKHYPPTPYDDVLAAL
                     VDREQAAKLGAAVPGQLAPQSLAAQLRTSLVPGLAAAAQSDVAAGRMTEVDGWLLPQS
                     VALLAALASRV"
     gene            complement(936..2492)
                     /gene="pabB"
                     /locus_tag="VNN98_00760"
     CDS             complement(936..2492)
                     /gene="pabB"
                     /locus_tag="VNN98_00760"
                     /EC_number="2.6.1.85"
                     /inference="COORDINATES: protein motif:HMM:TIGR00553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046820 - 4-amino-4-deoxychorismate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0008153 - para-aminobenzoic acid
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0009396 - folic acid-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxychorismate synthase component I"
                     /protein_id="HWM60644.1"
                     /translation="MAGWLGYELGYALEPRLGGGDGPLLRLGVFAAPDAEAPPVMGRA
                     YAGPLRPEWDEGAYAGRFRAVKDYIAAGDIYQANLSFRARFAFAGDPRALYEQLLAQS
                     GAAHCAYIDSFDEKNGGPHLLSLSPELFFDLAADGRITVRPMKGTLARSGGSDEAERA
                     ALAASAKDRAENLMIVDLLRNDLSRIAQTGSVAVSDLFKVETYPTLHAMVSTVTARKR
                     ADAGVADILRALFPCGSVTGAPKIRAMEILRELESSPRGAYCGAIGRFAPDGSARFNV
                     AIRTLTLGGDQGELGIGGGVVQDSRMQSEYAECLLKARFFEASRKPLELIETLRWKNG
                     FARLESHLARMRDSAKVFGLAFEDAAARATLTAAVAGKTGALRLRLTLNESGAHYAAA
                     HDLQPNPPHWTYAISPERTDSRDMFLRHKTSWRELYESEAKRLGTDEVIFLNERGELT
                     EGARSNIFVKRDGILLTPPLEAGLLDGRLRAELLAQGKARQAKLTPDDLAGEVYFGNS
                     LRGLIPAVRL"
     gene            2792..3208
                     /locus_tag="VNN98_00765"
     CDS             2792..3208
                     /locus_tag="VNN98_00765"
                     /inference="COORDINATES: protein motif:HMM:NF012241.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Hsp20 family protein"
                     /protein_id="HWM60645.1"
                     /translation="MNRQMTFGSPYLLGFEHLERLLERTAKAGDSYPPYNIEETQDGD
                     IRITLAVAGFAPDELSVTEEDRQLVVRGRQAEANGKTFLHRGIAARQFLRSFVLADGI
                     EVTAAALENGLLKIDLARKQVQPSVRVVEIKTGGLS"
     gene            3205..3459
                     /locus_tag="VNN98_00770"
     CDS             3205..3459
                     /locus_tag="VNN98_00770"
                     /inference="COORDINATES: protein motif:HMM:NF018343.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1150 family protein"
                     /protein_id="HWM60646.1"
                     /translation="MTDRFESDDIEDGQFAAGRITYIKPTGSAEAHRLGLIPANIDLP
                     DGVTLYVLHAEDGSVLGFTDGYASAYGAAVQNELTPVSLH"
BASE COUNT          683 a         1175 c         1162 g          641 t
ORIGIN      
        1 tcatgcgggc ggccttttcg cccaccgccg acttcctcaa ggccaagaat gttgccggct
       61 cgctcaccac ggtggagaac gcgatcgagc tggacgacat cggcaaggcg gcggtgatca
      121 ccacggcgct tgcgctgggc gtggatgcat ccggcgccaa ggcctacttg ctgggctgcg
      181 gcatggaact ggcgcccgat cccgaccggc gcctgacgct gaccggcgaa aaggacgcgc
      241 tgggcctgcc gcgcctgaaa ctggatatgc gcatcgccga ttccgacttc gcgctctacc
      301 gccagaccct ggcggagctg ggccggcaat tgctggccag caaggccggc atgctacggc
      361 tgaattacag ccatcgcgaa caatggctga cggcaatgga ctggggcaat catcacatgg
      421 gcaccacccg gatgagcagc gatcccaaac agggtgtggt caatgccgac agcctggtgc
      481 atggcgtggg caatctttat gtcgcgggca gttcggtgtt tcctacctat ggctcgtcca
      541 atcccacctt gaacttgatc gcgctgacct tgcggctggg cgatcatctg aaaaaggtga
      601 tggcatgaag cgccgggcta tgatcgcggg cctggtggcg gcaagcgtgg cggtggccgc
      661 cgggctgcac cgtttcacca acctgttcgt gaagcactat ccgcccacgc cttatgacga
      721 tgtgctggcg gcgctggtgg accgcgagca ggccgccaag ctgggtgccg cggtgccggg
      781 ccagcttgcg ccccagagcc tggcggcaca gctgcgtacc agcctggtgc cgggtctggc
      841 ggcggcggcg caaagcgatg tcgctgctgg acggatgacg gaagtggatg gctggctatt
      901 gccgcaaagc gtggcgctgc tggcggcgct ggcgtctaga gtctgaccgc gggtatcagt
      961 ccccgcagcg aattgccgaa ataaacctcg cccgccagat cgtccggtgt cagcttggct
     1021 tggcgcgcct tgccttgcgc cagaagttcg gcgcgcagcc gcccatccag cagaccggcc
     1081 tccagcggcg gcgttaacag gatgccgtct cttttgacga agatattgct gcgcgcgcct
     1141 tcggtcagtt cgccgcgctc attgaggaaa atcacctcgt cggtgcccag ccgtttggct
     1201 tcactttcgt acagctcgcg ccagctggtc ttgtggcgca ggaacatgtc ccggctgtcg
     1261 gtgcgttcgg gcgagatcgc ataggtccaa tgcggcggat tgggttgcag atcatgtgcc
     1321 gcggcatagt gtgcgccgct ctcgttcaga gtcaggcgta agcgcaaggc gccggtcttg
     1381 ccggcgactg cggctgtcaa cgtggcgcgg gccgctgcat cctcgaaggc taggccaaag
     1441 accttcgccg aatcccgcat gcgcgcgaga tggctctcca ggcgggcaaa accgtttttc
     1501 caacgcagag tctcgatcag ctccaacggc ttgcgcgacg cttcaaagaa gcgtgccttg
     1561 agcaggcatt cggcatattc gctctgcatc cgcgagtcct gtaccacgcc gccgccgatg
     1621 ccgagttcgc cctgatcgcc ccccagcgtc agggtgcgga tggcgacatt gaaccgcgcg
     1681 ctcccgtccg gcgcaaaacg gccgatggcg ccgcaatagg cgccgcgcgg actcgactcc
     1741 agttcgcgca aaatctccat ggcgcggatc ttgggcgcgc cagtcaccga gccgcaggga
     1801 aacagcgccc gcaagatgtc ggccacaccg gcatcggcgc gtttcctggc ggtcacagtg
     1861 gaaaccatgg catgcaaggt gggataggtt tccaccttga acagatcgct gaccgccacg
     1921 ctgccggttt gcgcgatgcg gctgagatcg ttgcgcagca aatccacgat catcagattc
     1981 tcggcgcggt ccttggcgct ggcggccagg gcggcgcgtt cggcttcatc gctgccaccg
     2041 ctgcgggcca gcgttccctt cattggccgc acagtgatcc gcccatcggc tgcgagatcg
     2101 aagaacaatt cgggcgacag gctgagaaga tgcggtcccc cattcttctc atcaaaagag
     2161 tcgatatagg cgcaatgggc ggcgccgctt tgcgccaaaa gctgttcgta caaggcgcgc
     2221 gggtccccgg cgaaggcgaa gcgggcgcga aaactcagat tggcctgata gatgtcgccc
     2281 gccgcgatat agtctttcac cgccctgaaa cggccggcgt aagcgccttc gtcccattcg
     2341 gggcgcagcg gtccggcata agcgcggccc atgaccggcg gcgcctcggc gtccggcgcg
     2401 gcgaataccc ccagccgcag caagggtccg tccccgccgc ccaggcgcgg ctccagggca
     2461 tagcccagtt cgtaacccaa ccacccagcc acatggcgcc cctggcccag cgccgcttcc
     2521 acgcccgcca gggcctacgg tacctcggcg gcgttgtcgg ccttgatgat ggccaaaggc
     2581 acagaaaaga cacggcgcgc gccgtcgtcc aggatgacca gcatgggcgg tttgtgcccc
     2641 ccctgccgcc ccggttcaac tgcgcaacag cacaacctga gattgcgcct ctacccgccg
     2701 ccacatcttg aatggcgccc gccacacccc atttttgttc tgccggccgc ccattcaggg
     2761 agccggacag ccgctcaaag gagggctgga catgaacagg caaatgacct ttggaagccc
     2821 gtatctgttg ggcttcgagc atctggaaag attgctggaa cgcaccgcca aagcgggcga
     2881 ttcctacccg ccctacaata tcgaagagac ccaagacggc gacatccgca tcacactggc
     2941 agtggcgggc tttgcgccgg acgagctcag cgtcaccgaa gaagatcgcc agctggtggt
     3001 tcgcgggcgc caggcggagg caaacggcaa aacgttcctt caccggggca ttgcggcgcg
     3061 acaatttttg cgcagcttcg tcctggcgga cggcatcgaa gtcaccgctg ccgcgttgga
     3121 aaacggattg ctgaagatcg atttggcccg caaacaggtc cagcccagcg tgcgggtcgt
     3181 agaaatcaag actggaggct tatcatgacg gacagatttg aaagcgacga catcgaggac
     3241 gggcagttcg cggccgggcg tatcacttac atcaagccca ccggcagcgc cgaggcgcac
     3301 cgcctgggcc tgatcccggc caacatcgat ctgcccgacg gcgtgacgct gtatgtgctg
     3361 cacgccgaag acggcagcgt gctgggtttc accgatggtt atgccagcgc ctatggcgcg
     3421 gcggtacaga acgaactgac gccggtcagc ctgcactagg ccaaagaccg taaaaaacag
     3481 agagccgcag gacttacgtc ttgcggcttt tttgtatctt cgaccctccc cttgagggag
     3541 ggtcgaaatc ctgcgagcga agcgaacagg atttcgggga ggggtaattg ctccagcgcc
     3601 taagcatgac ccctccccga aatttgctgc gcaaatttcg accctccctc aaggggaggg
     3661 t
//
LOCUS       DATMDK010000039         2090 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2303939,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000039 DATMDK010000000
VERSION     DATMDK010000039.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2090)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2090)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2090
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2303939"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1352
                     /locus_tag="VNN98_00775"
     CDS             <1..1352
                     /locus_tag="VNN98_00775"
                     /inference="COORDINATES: protein motif:HMM:NF013740.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:1905887 - autoinducer AI-2 transmembrane
                     transport [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HWM60647.1"
                     /translation="AVVQTVLGPLLEPLGLIALVLVFVGFILLQKDDLRDRFVRLAGS
                     RDMQRTTVALDEAASRLSRYLFLQTMINTCFGIVIGTGLWLIGIPNAGLWALMSALLR
                     FVPYVGVPLAFLFPFTLALAVDPGWSKMVWVMALYGGVEATVGQAVEPFLYGRSMGLS
                     AVAVVVAAVFWTWLWGPVGLLLSTPLTMCFVVFSRHVDSLKFLDVMLGDQPALRFEES
                     LYLRMLAEDPDDAADEAEDFLRANSLSAYYDEVAARALMLAQNDVNRGVLDPLRQSRI
                     RDAIKGLIANLAHRKDEEALGADLPESWRDAPLEPVLCVAGRGPLDEAAALLLVDMLA
                     KYGIAARVVSSDETSAANVRELSCIGVQLTCVSYLEPGTFKNARYQVRRLRKRMPGVP
                     VMALFWGLAGDNTRYLDGIEATECDIVTTGLKETVQHILTFARRSGTAVRHDYQAAK"
     gene            1349..1678
                     /gene="cutA"
                     /locus_tag="VNN98_00780"
     CDS             1349..1678
                     /gene="cutA"
                     /locus_tag="VNN98_00780"
                     /inference="COORDINATES: protein motif:HMM:NF015077.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0010038 - response to metal ion [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="divalent-cation tolerance protein CutA"
                     /protein_id="HWM60648.1"
                     /translation="MSEAADYGMLLTTVPSREEAAKIANLLIDEKLAACVQLLPIESF
                     YVWDGKTQNAAETLLLVKTRSALFDATIAKIKSVHSTSVPEIVAMPFAAGFAGYFRWI
                     DEVTARQ"
     gene            complement(1672..>2090)
                     /locus_tag="VNN98_00785"
     CDS             complement(1672..>2090)
                     /locus_tag="VNN98_00785"
                     /inference="COORDINATES: protein motif:HMM:NF015423.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="TRIC cation channel family protein"
                     /protein_id="HWM60649.1"
                     /translation="VTIALAGGLLTFVAWHYVREIPEGLLLCVDAAGLSLLAVAGTEK
                     ALEYGLKGPVAVMMGGITGVGGGTVRDILLNEIPAVLRVDFIASSALIGATVLVVVRH
                     FRVRAEWAAVMGGVTCGVLRLLSALLHWHLPVANIH"
BASE COUNT          348 a          676 c          676 g          390 t
ORIGIN      
        1 gggccgtggt gcagacggtg ctgggtccgc tgctcgagcc gctgggcctg atcgcgctgg
       61 tgctggtgtt cgtgggcttc attcttttac agaaagatga tctgcgcgac cgcttcgtgc
      121 gcctggctgg ctcgcgcgac atgcagcgca ccaccgtggc gctggatgaa gccgcgtccc
      181 ggctgtcgcg ctatttgttc ctgcagacca tgatcaacac ttgcttcggg attgtgatcg
      241 gcaccggcct gtggctgatc ggcattccca atgccggcct gtgggcgctg atgtcggcgc
      301 tgctgcgctt cgtgccctat gtcggcgtgc cgctggcctt cctgtttccc ttcaccctgg
      361 cgctggcggt ggatccgggc tggtccaaga tggtgtgggt gatggccctg tatggcggcg
      421 tcgaagccac ggtcggccag gcggtggagc cgttccttta tggccgcagc atgggcctgt
      481 ccgccgtggc ggtggtggtg gcggcggtat tctggacctg gctgtggggg ccggtcgggc
      541 tgctgctctc cacccccctg accatgtgct ttgtcgtgtt cagccgccat gtcgacagcc
      601 tgaaattcct ggacgtgatg ctgggcgacc agcccgcctt gcgcttcgag gaaagcctct
      661 atctgcgcat gctggcggaa gaccccgatg acgccgccga tgaggcggaa gatttcctgc
      721 gcgccaattc gctgtcggcc tattacgacg aagtggcggc gcgcgccctg atgctggcgc
      781 agaacgatgt caatcgcggc gtactcgatc ccctgcgcca gagccgcatc cgcgacgcca
      841 tcaaggggct gatcgccaat ctggcgcatc gcaaggacga ggaagcgctg ggcgccgacc
      901 tgcctgaatc ctggcgcgac gcgccgctgg agccggtgct gtgcgttgcc ggacgcgggc
      961 cgctggacga agccgccgcg ctgctgctgg tggatatgct ggccaaatac ggtatcgcgg
     1021 cgcgggtggt gtcgtcggac gagacctcgg ccgccaatgt ccgcgagctg agttgcatcg
     1081 gcgtgcagct gacttgcgtc tcctatctgg aacccggcac cttcaagaat gctcgctatc
     1141 aggtgcggcg gctgcgcaaa cgcatgcccg gtgtgccggt gatggcgctg ttctggggcc
     1201 tggcggggga caatacccgt tatctcgacg gcatcgaggc gacggaatgc gacatcgtta
     1261 ccaccgggct taaagagacg gtgcagcaca ttctcacctt cgcccgccgc tccggtacgg
     1321 ccgtccgcca cgattaccag gcggcgaagt gagtgaagct gccgactacg gcatgctgct
     1381 gaccaccgtg ccgtcacgcg aggaagcggc gaagatcgct aatctgttga tcgacgaaaa
     1441 gctggcggct tgcgtgcagc tgttgccgat cgaaagtttc tatgtctggg atggcaagac
     1501 ccaaaacgcg gccgagaccc tgttgctggt caagacccgc agcgccctgt tcgacgccac
     1561 catcgcgaaa atcaagtcgg tgcattccac cagcgtgccc gaaatcgtgg cgatgccgtt
     1621 cgcagcgggg ttcgcagggt atttccgctg gatcgatgag gttaccgcgc gtcagtgaat
     1681 attcgccacc ggcaggtgcc agtgcagcaa agccgagagc agccgcaaca cgccgcaggt
     1741 cactccgccc attaccgcag cccattccgc ccgcacccgg aaatggcgca ccacgaccag
     1801 caccgtggcg ccgatcagcg ccgaggaggc gatgaagtcc acccgtagca ccgccggtat
     1861 ttcgttcagc aatatgtcgc gcaccgtgcc gccgcccacg ccggtgatac cgcccatcat
     1921 caccgccacc ggccccttca ggccatattc caaagccttt tcggtacctg ccaccgccag
     1981 cagcgacagg ccggccgcgt ccacgcacaa caacaggcct tcgggaatct cacgcacata
     2041 gtgccaggcg acgaaagtca gaagcccgcc cgccagcgcg atggtgacca
//
LOCUS       DATMDK010000040         2105 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_18430,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000040 DATMDK010000000
VERSION     DATMDK010000040.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2105)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2105)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2105
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_18430"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..266)
                     /locus_tag="VNN98_00790"
     CDS             complement(<1..266)
                     /locus_tag="VNN98_00790"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM60650.1"
                     /translation="MRVLLGMTAALALLTAPALAADAAVSRTAAKTDPLKPGPLKAGP
                     LPSGKSAGVHAAQQARAGLALVSAGAIIAIVVVAAGAGGSNGNA"
     gene            395..1144
                     /locus_tag="VNN98_00795"
     CDS             395..1144
                     /locus_tag="VNN98_00795"
                     /EC_number="1.1.1.47"
                     /inference="COORDINATES: protein motif:HMM:NF005559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glucose 1-dehydrogenase"
                     /protein_id="HWM60651.1"
                     /translation="MSKLQGKVAVVTGASKGIGAGIARALGAAGASVVVNYASDKTGA
                     DKAVADIKAKGGKAIAVQGDVSKSADVKHLFDETRKAYGKLDVLVNNAGVFKFLPLEE
                     TSEAEYQRQFGTNVLGPLLATREALPLFGPEGGSVINISSIVSNMGIPGSAIYAGTKG
                     ALDTITLVMASELGPRKIRVNAINPGMVESEGTHTAGFIGGDFQKDIEAKAPLGRIGQ
                     PEDIAKVAVFLASDESGWLTGERISASGGHR"
     gene            1263..1967
                     /locus_tag="VNN98_00800"
     CDS             1263..1967
                     /locus_tag="VNN98_00800"
                     /inference="COORDINATES: protein motif:HMM:NF024950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HWM60652.1"
                     /translation="MRFSGKHVVVTGAASGLGLAIAQAAQLEGAAITAIDRIAAPFAD
                     SRICDITDEEQVARTLSGLTRIDAVVNSAGIARRARIDETDMADFDAVMAVNVRGAFL
                     VSKHALPALRKLGGAILHLSSGVATTGTRNRAAYTASKGAILSLTRNMALDYAGDKVR
                     VNCLCPGFVNTPLLASMPPERRAKLAALHPLGRMGESQDIVPMALLLISDQASWITGQ
                     AIAVDGGFNVGHMDDI"
BASE COUNT          404 a          667 c          651 g          383 t
ORIGIN      
        1 tgggcgttgc cgttgctgcc gccagcgccc gccgccacca ccacaatcgc gatgatcgca
       61 cccgcgctaa ccagcgccag accggcgcgc gcctgttggg cggcgtgaac gcctgccgac
      121 ttgcctgacg gaagtgggcc agccttaagc ggaccaggct tgagcggatc ggtcttggcg
      181 gcggtgcgcg acacggccgc gtctgccgcc aaggccggtg ccgtcagcaa cgccaatgcg
      241 gccgtcatcc ccaacaaaac tcgcatcccg ccgctcatat ttccctaagc acttatttca
      301 ccttgagaat ttgacaaaat tgcgacgccc cttgaaagcc tgactcatcg ttatgatgtt
      361 catctaacta tcaaaatatc acaggagaaa ttccatgagc aaacttcaag gcaaggtggc
      421 cgtagtgacc ggggcctcca agggcatcgg cgccggcatc gccagggcat tgggcgcggc
      481 gggcgcgtcc gtggtggtga attacgccag cgacaagacc ggggccgaca aggcggtggc
      541 cgacatcaag gccaagggcg gcaaggccat cgccgtgcag ggcgatgtgt ccaaatccgc
      601 cgacgtcaag catctgttcg acgagacccg caaggcctat ggcaagctgg atgtgctggt
      661 gaacaatgcc ggcgtattca aattcctgcc tttggaggag accagcgagg cggaatatca
      721 gcgccagttc ggcaccaatg tattggggcc gttgctggcc acgcgcgaag ccctgccttt
      781 gttcggacct gagggcggca gcgtgatcaa tatttcgtcc atcgtcagca acatgggtat
      841 tcccggctcg gcgatctatg ccggcaccaa gggcgcgctg gataccatca ccctggtgat
      901 ggcctccgaa ttgggcccgc gcaagatccg cgtcaatgcc atcaatccgg gcatggtgga
      961 aagcgaaggc acccacaccg ccggcttcat cggcggcgat ttccagaaag atatcgaagc
     1021 caaggcgccg ctgggccgca tcggccagcc ggaggacatc gccaaggtcg cggtcttcct
     1081 cgccagcgat gagtcgggtt ggctcaccgg ggaacgtatt tcggcttccg gcggccatcg
     1141 ttgaatgttg cgcctccctc gcggcttacg ccgctcgaag aggcaccagc ttttgtaagc
     1201 tcgccgaaaa ggctcgcaaa caaaagctag gcgcatgccc tgccatcacg ttatgacggg
     1261 gcatgcgttt ttccggcaag catgtggtgg tgacgggtgc agcctccggg ctggggcttg
     1321 cgatcgcgca agccgctcag ctggaagggg cggcaatcac cgccatcgac cgtattgccg
     1381 cgcctttcgc ggatagccgc atctgcgaca tcaccgacga agaacaagtg gcgcgcacgc
     1441 tgtccggcct gacgcggatc gacgcggtgg tgaacagcgc cggcatcgcc cgccgcgcaa
     1501 ggatcgatga aaccgacatg gccgatttcg acgcggtgat ggcggtcaat gtgcgcggcg
     1561 ccttcctggt ctccaaacac gccctgcccg ctttgcgcaa gctgggcggc gcgatactgc
     1621 atctgtcgtc gggggtggcg accaccggca cccgcaaccg cgccgcttat accgccagca
     1681 agggcgccat cctgtcgctg acccgcaaca tggcgctgga ttacgccggc gacaaagtgc
     1741 gggtgaactg cctgtgcccc ggtttcgtca acacgccgct cttggccagc atgccgccgg
     1801 agcggcgcgc caagctggcg gcgctgcatc cgctgggacg catgggcgaa tcgcaagata
     1861 tcgtccctat ggcgctgctg ttgatttcgg accaggcatc ctggattacc ggccaggcca
     1921 tcgcggtgga tggcggattc aatgtcggcc atatggatga tatttagtct gcggtccccg
     1981 ccccgacaca attaagacaa gacctttttc tagacggggc gttacactcg cctgtttttc
     2041 acggatttaa cgtcattgac cgcgctgatt gacgcccgca cgcttcccgc cgccacggtg
     2101 ctgga
//
LOCUS       DATMDK010000041         2354 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1617423,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000041 DATMDK010000000
VERSION     DATMDK010000041.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2354)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2354)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2354
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1617423"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(177..518)
                     /gene="hisI"
                     /locus_tag="VNN98_00805"
     CDS             complement(177..518)
                     /gene="hisI"
                     /locus_tag="VNN98_00805"
                     /EC_number="3.5.4.19"
                     /inference="COORDINATES: protein motif:HMM:NF000768.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004635 - phosphoribosyl-AMP
                     cyclohydrolase activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosyl-AMP cyclohydrolase"
                     /protein_id="HWM60653.1"
                     /translation="MTDLLTHAAFVSAVKFNSDGLVPAIAQSKETGEVLMFAWMTKAT
                     LEETLATGHVTYWSRSRQKVWKKGETSGNHQRLVEAFVDCDGDVLLLKVDQMGPACHT
                     GAPSCFFRKLG"
     gene            complement(515..1663)
                     /gene="metC"
                     /locus_tag="VNN98_00810"
     CDS             complement(515..1663)
                     /gene="metC"
                     /locus_tag="VNN98_00810"
                     /EC_number="4.4.1.13"
                     /inference="COORDINATES: protein motif:HMM:TIGR01324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004121 - cystathionine beta-lyase
                     activity [Evidence IEA];
                     GO_process: GO:0009086 - methionine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cystathionine beta-lyase"
                     /protein_id="HWM60654.1"
                     /translation="MTDKPETRAISEGRMSAEHFGAINTPVYRASTILYPDLAALKAN
                     TQPYTYGRRGTPSTKSFEEAISSLEGAAKTVSVTSGIQAIGLAILSVCGAGDHILMVD
                     SAYEPTRILCDRTLKRLGIETSYYAPTEDIAPYLKPNTKAVFCESPGSLTFEVQDIPA
                     IVKAANAHGAAVLMDNTWATPLFFQPLKHGVDLSIQAATKYVGGHADVMLGTVAANER
                     HAARLHQIHGDLGLYAGGDDCFLGLRGLRTLAVRLARHQETGLTLARWLQARPEVARI
                     LHPGLEGDPGHALWKRDFSGACGLFGVILKPVSEAAVAAFVDGLQHFGIGYSWGGFES
                     LIVPAHIRRTAKPFAAEGPVLRIHAGLEDAGDLIADLEKGLARLKDKS"
     gene            complement(1656..>2354)
                     /locus_tag="VNN98_00815"
     CDS             complement(1656..>2354)
                     /locus_tag="VNN98_00815"
                     /inference="COORDINATES: protein motif:HMM:NF013050.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM60655.1"
                     /translation="QRSEKAPRQPLSREEWKSVAALLVLVIPLTLWWACYEQQGNIIA
                     LFADANTDRRLIPGLINWQIPVTWFQSFNPFIIFAFTPFVIALWTRQARTLKEPNSMY
                     KIVLGCVLLALGYVLIAYASWQGGLGAKISWTWLLGFFVLLTTGEIYLSPISMSLYSK
                     VSPMRIVSLMFAVNFAPNFLGGGLMQGWLGTFWGNMGHPTFFLMIAAISLVAGAIIWV
                     MEKPLRPYLAKSHD"
BASE COUNT          455 a          726 c          755 g          418 t
ORIGIN      
        1 gggcatcagc accgggcggc cgaaatagag tccgcacacc accacgcccg caatcaccgc
       61 cgccatgaat ttgggcgtca gcgtatcggg cttggcggcg acggcgcggg gcgcgttcag
      121 ttcggacatg gcgactccag aaggccagac tataacccct ggcaacctgt tccgcttcag
      181 cccaatttcc ggaagaagca gcttggcgcc ccggtgtggc aggcaggccc catctggtcc
      241 accttcagca gcagcacgtc gccgtcgcag tccacaaaag cctcgaccag ccgctggtgg
      301 ttgccgctgg tttcgccctt cttccacact ttctggcgcg accgcgacca gtaggtgaca
      361 tggccggtcg ccagcgtctc ttccagggtg gctttggtca tccaggcgaa catcagcact
      421 tcgccggttt ccttgctctg ggcgattgcc ggcaccaggc catcgctgtt gaatttcacc
      481 gcagaaacaa aggcggcatg ggtgaggaga tcggtcacga cttgtctttc aaacgggcca
      541 ggcccttttc caggtcggcg atcaggtcgc cggcgtcttc cagtccggca tggatgcgca
      601 gcaccggccc ttccgccgcg aaaggcttgg ccgtgcgcct gatatgggcc ggaacgatca
      661 ggctttcaaa cccgccccag gaatagccga tgccgaaatg ctgcaaccca tccacgaagg
      721 cggccacagc cgcctcggat actggtttaa gaatgacgcc gaacaggccg caggcgccgg
      781 agaaatcccg tttccacaag gcatggccgg gatcgccttc cagcccggga tgcaggatgc
      841 gggcgacttc gggccgggcc tggagccagc gggccagggt caggccggtc tcctggtggc
      901 gggccagccg cacggccagg gtgcgcagcc cgcgcaggcc caggaaacaa tcatcgccgc
      961 cggcataaag ccctagatcg ccatggatct ggtgcagccg ggccgcatgg cgttcattgg
     1021 cggcgacagt gcccagcatc acatcggcat ggccgccgac atatttggtg gccgcctgga
     1081 tagacaggtc cacgccgtgc ttgagcggct ggaagaacag cggcgtcgcc caggtattgt
     1141 ccatcagcac ggcggcccca tgggcgttgg ctgccttcac gatggcgggg atatcctgca
     1201 cctcgaaggt cagcgagccg gggctttcgc agaacaccgc cttggtgttc ggcttcagat
     1261 acggggcgat atcctcggtc ggcgcgtaat agctggtctc gatgccgagg cgcttgaggg
     1321 tgcggtcgca caggatgcgg gtcggctcat aggcgctgtc caccatcaaa atgtgatcgc
     1381 ccgcgccgca caccgacagg atggccagcc cgatggcctg gatgccggac gtgacgctga
     1441 cggtttttgc cgcgccttcc agactggaga tagcctcttc gaagcttttg gtgctgggcg
     1501 tgccgcggcg gccataggtg taaggctggg tattggcctt cagcgccgcc aggtcgggat
     1561 acagaatggt ggaggcgcga tagaccggcg tgttgatggc gccgaaatgc tcggcgctca
     1621 tgcgcccctc gctgatggcg cgggtttcgg gtttgtcagt catgggattt cgccaagtaa
     1681 ggccggagcg gtttttccat cacccagatg atggcgcccg ccaccaggct gatggcggcg
     1741 atcatcagaa agaaggtggg atgccccata tttccccaaa aagtgcccaa ccacccctgc
     1801 atcagcccgc cgcccaagaa gttgggcgcg aaattgaccg cgaacatcag cgacacgatc
     1861 cgcatgggcg agactttgga atagagcgac atgctgatgg gcgagagata gatttcgccg
     1921 gtggtgagca ggacgaaaaa gcccagcagc caggtccagc tgatcttggc gcccagcccc
     1981 ccctgccatg aggcataggc aatcagcaca taacccagcg ccagcagcac acagcccaga
     2041 acgatcttgt acatcgagtt tggttctttg agcgtccgcg cctggcgcgt ccacaaagcg
     2101 atcacgaaag gcgtgaaggc gaaaatgatg aaaggattga agctctggaa ccaggtcacc
     2161 gggatctgcc agttgatcag gcccgggatc aggcggcggt cggtattggc gtcggcgaac
     2221 agagcgataa tgttgccctg ctgttcgtaa caggcccacc acagggtcag ggggatcacc
     2281 agcaccagca gggcggcgac cgatttccac tcttcgcggc tcagcggttg gcggggagct
     2341 ttttcgctcc gctg
//
LOCUS       DATMDK010000042         2174 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_21092,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000042 DATMDK010000000
VERSION     DATMDK010000042.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2174)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2174)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2174
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_21092"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..575
                     /locus_tag="VNN98_00820"
     CDS             <1..575
                     /locus_tag="VNN98_00820"
                     /EC_number="1.1.1.267"
                     /inference="COORDINATES: protein motif:HMM:NF024684.4"
                     /note="catalyzes the formation of 2-C-methyl-D-erythritol
                     4-phosphate from 1-deoxy-D-xylulose-5-phosphate; Derived
                     by automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate reductoisomerase"
                     /protein_id="HWM60656.1"
                     /translation="NWAMGRKISLDSATLMNKGLELIEAHFLFALPPEKLGVVVHPQS
                     IVHCLVSYEDGTTMAHLSAPDMRTPIAHALGWPRRIPSPSRRLDIAALGSLVFHPPAH
                     DRFPALNLAIGSMRSGGMAPTVLNAANEIAVQAFLDRRIGFLDIPRVVAAALDEDVGS
                     NGMAGDLQSVLGIDARARVLAEEICQRVGT"
     gene            579..1700
                     /gene="rseP"
                     /locus_tag="VNN98_00825"
     CDS             579..1700
                     /gene="rseP"
                     /locus_tag="VNN98_00825"
                     /inference="COORDINATES: protein motif:HMM:NF014244.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RIP metalloprotease RseP"
                     /protein_id="HWM60657.1"
                     /translation="MLDAIRGLIAWTPLGLPAFLFVITLVVFFHELGHFLVARAFGVK
                     VDTFSVGFGKEIVGLTDRSGTRWKISWLPIGGYVKFAGDADAASRPDVEAASQMTVAE
                     REGVLMFKPLYQRALVAVSGPLANFALAIAMLTGILMYTGHSEVASIVGEVGNGMPAA
                     LAGIRTGDRVTRIDRTMITDFQQLPEIISVSSDKAPLAIGISRAGHDMTVWVTPKRVK
                     FKDILGNQASQMIIGISPVHETYSPVGAFAAACSETGGIMKITVLTIARIITGHGGAD
                     QLSGPVGIAKVTHQVAELGFLPLLNLVAILSVSIGLANLFPIPLLDGGHLLYYGCEAV
                     LGRPLGERAQDVGFRLGLVLVLGLMLLTTWNDLVRLNLF"
     gene            1807..>2174
                     /locus_tag="VNN98_00830"
     CDS             1807..>2174
                     /locus_tag="VNN98_00830"
                     /inference="COORDINATES: protein motif:HMM:NF018899.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="POTRA domain-containing protein"
                     /protein_id="HWM60658.1"
                     /translation="MALISAPAGAQLRPGAADRAKELNRQPAAPTNADAAAAANPAAQ
                     AAAPVAEAPRVIQHIVVRGTQRVEPGTVLTYVGVREGDNYTPADTDTALKALTATGLF
                     SDVKTSFDGATGTLTIRVTE"
BASE COUNT          360 a          692 c          692 g          430 t
ORIGIN      
        1 ccaactgggc catgggccgc aagatttcgc tcgacagcgc caccttgatg aacaaggggc
       61 tggaactgat cgaggcgcat ttcctgtttg ccctgccgcc ggaaaaactg ggcgtggtgg
      121 tgcatcccca atccattgtg cattgcctgg tgagttatga ggacggcacc accatggcgc
      181 atctgtccgc tcccgacatg cgcacgccca tcgcccacgc cttgggctgg ccgcgccgca
      241 ttccctcacc gtcacggcgc ctggatatcg cggcgctggg cagcctggtg ttccatcccc
      301 cggcgcatga ccggtttccg gccctcaatc tggcgatcgg ttccatgcgc tccggcggca
      361 tggcgcccac ggtgctgaac gccgccaacg agatcgcggt gcaggccttt ttggaccgcc
      421 gcatcggttt cctcgatatt ccccgggtgg tcgcggccgc gctggacgag gatgtcggca
      481 gcaacggcat ggcgggcgat ctgcaaagcg tgttgggcat cgatgcgcgg gcgcgggtgc
      541 tggccgagga aatctgtcaa agagtaggga cctagaacat gctggatgcg atacgcgggt
      601 tgatcgcctg gactccgctg ggcctgcccg ccttcctctt tgtcatcacc ttggtggtgt
      661 tcttccatga gctgggtcat ttcctggtag cgcgtgcctt tggcgtgaag gtcgatacct
      721 tctccgtcgg cttcggcaag gagattgtcg gcctcacgga tcgttcgggc acgcgctgga
      781 agatcagctg gctgcctatc ggcggctatg tgaaattcgc cggtgatgcc gacgccgcct
      841 ctcgccccga tgtcgaggcc gcgtcacaga tgacagtggc cgagcgggaa ggggtcttga
      901 tgttcaagcc cctttatcag cgcgccctgg tggcggtgag cgggccgctg gccaatttcg
      961 cactggccat tgcgatgctc accggcatcc tgatgtacac cggccattcc gaggtcgcct
     1021 ccatcgtggg cgaagtggga aatgggatgc ctgcagcgct ggccggcatc cggactggcg
     1081 accgggtcac ccgaatcgac cggacgatga tcacggattt ccagcagctg ccggagatca
     1141 tctcggtctc cagcgacaag gctccgctgg ccattggcat cagccgtgcc ggccatgaca
     1201 tgaccgtatg ggtcactccc aagagggtca agttcaagga catcctgggc aaccaggcca
     1261 gccagatgat tatagggatc agcccggttc acgagaccta tagcccggtg ggcgcgtttg
     1321 ccgcagcctg tagcgaaacc ggcggcatca tgaagatcac ggtcctgaca attgcccgga
     1381 tcatcaccgg ccatggcggc gccgaccagc tttccggccc cgtcgggatc gccaaggtga
     1441 cccatcaggt ggcggaactg ggctttctgc cgctgctcaa tctggtggct atcctttctg
     1501 taagcatcgg gttggccaat ctttttccga ttccgctcct cgacggggga catcttctgt
     1561 actatggatg cgaagctgtt ttggggcgtc cgctgggtga gcgggcccaa gacgttggat
     1621 ttcggcttgg gctggttttg gtactggggc ttatgctcct gacaacctgg aatgacctgg
     1681 tccggctgaa tcttttctga aaaccgggcc gcgcctgccg cgcccataga cgagttggcc
     1741 gaaaccggga tgcggacatt gcgccttaga agcaggttgt tgcgcgcgac ctccgccggc
     1801 ctttgcatgg cgctgatttc cgcgccggcc ggggcacaat tgcgtcccgg tgccgccgat
     1861 cgcgccaagg aattgaaccg gcagccggca gcccccacca atgccgatgc cgcggctgcc
     1921 gccaatccgg cggcgcaggc ggcagctccc gtcgccgaag cgcctcgtgt catccagcat
     1981 atcgtggtgc gcggcaccca gcgcgtggag cccggcacgg ttctcaccta tgtcggggtg
     2041 cgcgagggcg acaattacac ccccgccgac acggacacgg cgctgaaggc gctcaccgcc
     2101 accggcctgt tttccgacgt caagaccagc ttcgacggtg ccaccggtac gctgaccatc
     2161 cgcgtcaccg agaa
//
LOCUS       DATMDK010000043         3027 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_254736,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000043 DATMDK010000000
VERSION     DATMDK010000043.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3027)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3027)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3027
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_254736"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1184)
                     /gene="gcvPA"
                     /locus_tag="VNN98_00835"
     CDS             complement(<1..1184)
                     /gene="gcvPA"
                     /locus_tag="VNN98_00835"
                     /EC_number="1.4.4.2"
                     /inference="COORDINATES: protein motif:HMM:NF001696.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004375 - glycine dehydrogenase
                     (decarboxylating) activity [Evidence IEA];
                     GO_process: GO:0006546 - glycine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminomethyl-transferring glycine dehydrogenase
                     subunit GcvPA"
                     /protein_id="HWM60659.1"
                     /translation="MRYLPLTHDDRRAMLAKIGAPDVDALFRDVPKGALAPLSLFDLP
                     DTQGELEVERAMSKLAARNVAAGAAPFFCGAGAYKHHVPSAVDHLIQRSEFLTSYTPY
                     QPEIAQGTLQYLFEFQTQVALLTGMEVANASLYDGSTATAEAVLMAQRLTKRGKAILS
                     GGLHPHYAETVETVASLAGAVSRSAVTPGSAEDIIALIDEDTACVVVQSPDVFGLIRN
                     LRPIADAAHAKGALLIAVVTEVVSLGLIESPGAQGADIVAAEGQSIGNGLNFGGPYVG
                     LFATREKFLRQMPGRLCGETVDAEGRRGYVLTLSTREQHIRREKATSNICTNSGLCCL
                     AFTIHLSLLGEEGLTRLARINHAKASALADKLAALPGVEVLTGAFFNEFTIKLPKPAA
                     PVV"
     gene            complement(1332..1706)
                     /gene="gcvH"
                     /locus_tag="VNN98_00840"
     CDS             complement(1332..1706)
                     /gene="gcvH"
                     /locus_tag="VNN98_00840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020045076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0019464 - glycine decarboxylation via
                     glycine cleavage system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycine cleavage system protein GcvH"
                     /protein_id="HWM60660.1"
                     /translation="MSEVRYTDQHEWIRLDGDEATVGITKYAAESLGDVVFVELPASG
                     KAVTAGAEAAVVESVKAASDIYAPAGGTVTAANAALEKEPSKVNEDPEGEGWFFKLKL
                     ADKGEFAKLMDAAAYAKFVETL"
     gene            complement(1720..2829)
                     /gene="gcvT"
                     /locus_tag="VNN98_00845"
     CDS             complement(1720..2829)
                     /gene="gcvT"
                     /locus_tag="VNN98_00845"
                     /EC_number="2.1.2.10"
                     /inference="COORDINATES: protein motif:HMM:NF010093.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004047 - aminomethyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006546 - glycine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycine cleavage system aminomethyltransferase
                     GcvT"
                     /protein_id="HWM60661.1"
                     /translation="MTIASEVLRRTPLYALHLELGGKMVLFAGYEMPVQYPAGILKEH
                     LHTREKAGLFDVSHMGQAFLAGDTAALERVTPADVAGLKEGMQRYGLLLNDAGTIKDD
                     FMFSRLAGEADLYLVVNADTKEGDFAYIAEMLAGAAMLTPKPDRALLALQGPLAAQVL
                     ERHSPGISQLTFMQVVRAQVAGAPAIISRSGYTGEDGFEISIAGTDAERVARTLLGES
                     EVLPIGLGARDSLRLEAGLCLYGHDIDDTRNPAEAALMWSIGKRRKEARDFPGAEKIM
                     AGGMPTKRVGILPDGRAPAREGAEIADKTGRVIGKITSGGFGPSLNAPVAMGYVETAF
                     AAIGTPVDLMVRGKALPAVIAAMPFVPHTYRRPEK"
     regulatory      complement(2866..2989)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00504"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="glycine riboswitch; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="glycine"
                     /db_xref="RFAM:RF00504"
BASE COUNT          537 a          987 c          939 g          564 t
ORIGIN      
        1 actaccgggg cggcgggctt gggcagcttg atcgtgaact cgttgaaaaa ggcgccggtg
       61 agaacttcca caccaggcag cgccgccaat ttgtcggcca gcgccgacgc cttggcgtgg
      121 ttgatgcgcg ccagccgggt cagaccttcc tcgcccagca gcgacaaatg gatggtgaag
      181 gccagacagc acagaccgga attggtgcag atattgctgg tcgccttttc gcggcggata
      241 tgctgttcgc gggtggagag cgtcagcaca tagccgcggc ggccttcggc atccaccgtc
      301 tcgccgcaca gccggcccgg catctggcgc aggaacttct cgcgggtggc gaacagcccg
      361 acatagggtc cgccgaaatt cagaccgttg ccgattgact ggccttccgc cgccacaata
      421 tcggccccct gggcaccagg agattcaatg agccccagcg ataccacttc ggtcaccacc
      481 gcgatcagca gcgcgccctt ggcatgggcg gcatcggcga tggggcgcag gttgcggatc
      541 agcccgaaca cgtccgggct ctgcaccacc acgcaggcgg tatcctcgtc gatcagagca
      601 ataatgtcct cggcgctgcc cggcgtcacg gcactgcggc tgacggcgcc cgccaggctg
      661 gcgacggttt ccaccgtctc ggcataatgg ggatgcagcc cgcccgacag gatcgccttg
      721 ccgcgcttgg tgaggcgctg ggccatcaac accgcttcgg cagtggcggt ggagccgtca
      781 taaagcgagg cattggccac ttccatgccg gtcagcagcg ccacctgagt ctggaattcg
      841 aacagatatt gcaaggtccc ttgcgcgatt tccggctggt agggcgtgta gctggtgagg
      901 aattccgaac gctgaatcag atgatccacc gcgctgggga catgatgctt gtaggcaccc
      961 gcgccgcaga agaaaggcgc cgcgcccgcc gccacattcc tggccgccag cttggacatc
     1021 gcccgctcga cttccagctc gccctgggtg tccggcaggt cgaacagcga cagcggcgcc
     1081 agcgccccct tgggcacgtc gcggaacagc gcgtccacat cgggagcacc gattttcgcc
     1141 agcatggcgc ggcggtcatc gtgagttaaa ggaaggtagc gcattattac ctcttagtgt
     1201 catggcccgg gaatccgggc cacccaggtg acgccttgtt tgatccccaa aattttgtcg
     1261 gtgtactttt ttgaacggtc attacttgtt tcacctgggt ggcccgcact ccggcgggcc
     1321 atgacaatgg gttaaagtgt ctccacgaac ttcgcatagg cagccgcatc catcagcttg
     1381 gcgaactcgc ccttatcggc gagtttcagc ttgaagaacc agccttcgcc ttccgggtct
     1441 tcgttgacct tggacggttc tttttccagc gccgcattgg cggcggtaac ggtgccgccc
     1501 gccggggcat agatgtcgct ggcggccttg acgctttcca ccaccgcggc ctcagcccca
     1561 gccgtcacgg ccttgccgct ggcgggaagc tccacaaaga ccacatcgcc caggctttcg
     1621 gcggcatatt tggtgatgcc gaccgtggcc tcgtcgccgt cgaggcggat ccactcatgc
     1681 tggtcggtgt agcgcacttc actcatgaaa aactcctgat tatttctcgg ggcggcgata
     1741 agtgtgagga acaaaaggca tggcggcgat gacggcgggc agcgccttgc cgcgcaccat
     1801 caggtccact ggcgtgccga tggcggcgaa ggcggtttcg acataaccca tggcgacagg
     1861 cgcgttcagg ctggggccga agccgccgct ggtgatcttg ccgatcaccc ggccggtctt
     1921 gtcggcaatc tcggcgcctt cgcgcgccgg ggcccggcca tccggcagga tgccgactcg
     1981 tttggtgggc atgccgcccg ccatgatctt ttcggcgccg ggaaaatccc tggcctcctt
     2041 gcggcgcttg ccgatcgacc acatcagcgc ggcctcggcc gggttacggg tgtcgtcgat
     2101 gtcgtggccg tacaggcaaa gccccgcttc cagccgcaaa ctgtcgcgcg cacccagccc
     2161 gatgggcagc acctcgctct cgcccagcag ggtgcgggcg actcgctcgg cgtcggtccc
     2221 ggcgatggaa atctcaaaac catcctcgcc ggtatagccg ctgcggctga tgatggcggg
     2281 ggcgcccgca acctgcgcgc ggacaacctg catgaaagtg agctgcgaga tgcccggcga
     2341 atgacgctcc agcacctgcg ccgccagcgg cccctgcaac gccagcaaag cccggtcggg
     2401 tttgggggtc agcatcgccg cacccgccag catctccgcg atataggcga agtcgccttc
     2461 cttggtatcg gcattgacca ccagatagag gtccgcctcg ccggccaggc gcgagaacat
     2521 gaaatcgtcc ttgatggtgc cggcatcgtt cagcagcaag ccgtagcgct gcatgccttc
     2581 tttcaatcct gccacatcgg cgggcgtcac ccgttccagc gctgcggtgt cgccggccaa
     2641 aaaggcctgg cccatatgcg agacatcgaa cagcccagct ttttcgcggg tgtgcagatg
     2701 ctctttgagg atgccggcag ggtattgcac cggcatctca tagccggcga acagcaccat
     2761 cttgccgccc agctccaggt gcagggcgta aagcggggtg cggcgcaaaa cttcagaggc
     2821 aatggtcata tcggttccga tgcaagagtc cacgccctga aagagcgcga cccctctgta
     2881 tcggacctga gagatttccc tcctgcatcc ttgaagacgc cgaggttacc ccttcggtgg
     2941 aaccggccct cttactagac ggaccgcttc actttccaga agttcatcac ccgatcgcgg
     3001 tccttttgcc tgagagtttc cggggcg
//
LOCUS       DATMDK010000044         3292 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_3220289,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000044 DATMDK010000000
VERSION     DATMDK010000044.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3292)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3292)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3292
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3220289"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            42..623
                     /locus_tag="VNN98_00850"
     CDS             42..623
                     /locus_tag="VNN98_00850"
                     /inference="COORDINATES: protein motif:HMM:NF018960.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain-containing protein"
                     /protein_id="HWM60662.1"
                     /translation="MTAATLGTRAPDSTDARHRTLSFAEHLADTGLEKCFRFWLAHRR
                     GDRMPPKSALVMSRMPPDILPNLFLYERTPEQRFRCRLAGTAVAQQFGKDPTGCHLDE
                     LIVPASLESRAALFRRVLDTQCPVVYGGQLANSEHGWKPFKRLLLPVADEAGASAFLF
                     GMVLFPKPSRSGVFVVNSIGLDFEVWATAAETI"
     gene            complement(729..1223)
                     /locus_tag="VNN98_00855"
     CDS             complement(729..1223)
                     /locus_tag="VNN98_00855"
                     /inference="COORDINATES: protein motif:HMM:NF017470.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DUF805 domain-containing protein"
                     /protein_id="HWM60663.1"
                     /translation="MDPQALIGLYRRTITEHYFDMHGRVGRAEFWYFVLANFIASLLA
                     HVVGAILNLPLGEIYNLAVLLPAMTIGARRLQDIGRDGRLVWLLLILVAVTQIIGILT
                     ALTFAFAGLFGFLFVPGLSVVGLATLAVAVVLIYFWCQPGDPAANVYGPVPPVFDPAV
                     KPAV"
     gene            1381..2334
                     /gene="argC"
                     /locus_tag="VNN98_00860"
     CDS             1381..2334
                     /gene="argC"
                     /locus_tag="VNN98_00860"
                     /EC_number="1.2.1.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003465021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003942 -
                     N-acetyl-gamma-glutamyl-phosphate reductase activity
                     [Evidence IEA];
                     GO_process: GO:0006592 - ornithine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyl-gamma-glutamyl-phosphate reductase"
                     /protein_id="HWM60664.1"
                     /translation="MSKQAKIFIDGAAGTTGLEIRERLAGRTGLSLIALSDAERKDAG
                     ARKAALNDADLVILCLPDEAAREAVSLIDNPATRVIDASTAHRVAEGWTFGFPELEPD
                     GTERIAAAKRVSNPGCWSTGFLAIARPLLRAGLIPADFPLTANGVSGYSGGGKSMIAE
                     FEDKKAADYTETVSRIYGLNLAHKHIPEMQKHSGLAHPPVFEPSIGRFYRGMLVEVPL
                     QLWALPGKPSARDIHAALLRAYPERPLVKVASLEDATAVKSLDAEILAGTNGLTLYVF
                     ANEKSAQARLVAAFDNLGKGAGGAAVQNLNIMLGLPETTGL"
     gene            2353..>3292
                     /locus_tag="VNN98_00865"
     CDS             2353..>3292
                     /locus_tag="VNN98_00865"
                     /inference="COORDINATES: protein motif:HMM:NF024578.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PDZ domain-containing protein"
                     /protein_id="HWM60665.1"
                     /translation="MSRTWLGIGIVFAVALVLFAGAVLYAIHRAPKPRGFSGLQFAAL
                     TPAASARTPLLARGGALVLAVLDDSPADRAGIKPGEVLAAIDGTQIASARQASDMVRS
                     HRVGDRVVLTLYDVTKGEVKPATVSLTFDAAPPVGKTFSVHPPRTLAKEVFNLPFPAA
                     NASWSRRLYLGPTIRPLALSGLGAGQCNGFAPEEWRVAGYTPDNSLFHVMAKAGFAHA
                     IFKSAALNGASPDAFVLDFLQTTFGAPTVMTPPQDRPYGFVVRDFGNNKGGAGFVEYR
                     VTAGRIALWVAAVPGGDVAWAKPLVGAVALSMRCAAP"
BASE COUNT          567 a         1060 c         1074 g          591 t
ORIGIN      
        1 aagtgtgcgc caaccccagg cgaagccgac agagaaacac cgtgaccgca gccactttgg
       61 gcaccagggc ccccgattca accgacgccc gccaccgcac gctctcattc gcggagcatt
      121 tggcggacac aggcctggag aaatgcttcc gcttctggct tgcgcacagg cgcggcgacc
      181 gcatgccgcc caagagcgcc ctggtgatgt cgcggatgcc gccggatatc ctgcccaacc
      241 tctttctgta tgagcgtacg ccggagcagc ggtttcggtg ccggctggcc ggtacggctg
      301 tcgcccagca gttcggcaag gaccccacgg gctgccatct tgatgaattg attgtccccg
      361 ccagtttgga gagccgcgca gccctgtttc ggcgtgtcct cgatacgcaa tgtccggtcg
      421 tgtatggcgg gcagttggcc aattccgagc acgggtggaa gcccttcaaa cgcctgctgc
      481 ttcccgtcgc cgatgaagcc ggagccagcg ccttcttgtt cggtatggtg ctgtttccta
      541 agcccagccg gtcgggtgtc ttcgtggtga attccatagg tctcgatttc gaggtttggg
      601 cgaccgcggc cgaaaccatt tagacccgct cgcgcgtttt tgcggggctg gtctggtgcg
      661 ccgcgatcca gtcggcgaaa cccgcattcg ccgccgtgat acccaagtcc atttcggcga
      721 cgatcttctc agacggcggg cttgactgcc ggatcaaata ccggcggcac cggtccatag
      781 acgttggcgg ccggatcgcc cggttggcac cagaaataga tcagcaccac cgccacggcc
      841 agcgtcgcca ggccgaccac gctgaggccc ggcacgaaaa ggaatccgaa cagtccggca
      901 aaggcaaagg tcagcgccgt caggatgcca atgatctgag taacggcgac caggatcagc
      961 agcagccaca ccagccggcc gtcgcgtccg atgtcctgca gccgccgcgc tccgatggtc
     1021 atggccggca gcagcaccgc aaggttgtaa atttcgccca ggggcagatt caggatggcg
     1081 cccacgacat gggccaggag ggaagcgatg aaattcgcca gcacgaaata ccagaattcg
     1141 gcacggccca cccggccgtg catgtcgaaa taatgttcag ttatcgtgcg gcgataaagg
     1201 ccgatcagcg cttgcggatc catgacgcta cccctgtttt cgcacccgcc tttggcgtat
     1261 ggcggacccg gttgtaagac ttccgaccct tgcgcccagc gcagggccgg atcgcgtccc
     1321 tttggggacg aaatgagcta agaacgacat tacgtccaag tcaatgttgc ggatgcaggt
     1381 atgagcaaac aggcgaaaat cttcatagac ggggcggcag gcactaccgg cctggaaatc
     1441 cgtgagcgtc tggcgggccg taccggtctg tcgctgatcg ccctgtccga tgccgaacgc
     1501 aaggacgcag gcgcccgcaa ggcggccctg aacgatgccg atctggtgat cctgtgcctg
     1561 ccggacgaag cggcgcgcga ggcggtgagc ctgatcgaca atcccgccac ccgggtgatc
     1621 gacgcctcca ccgcccaccg ggtggcggaa ggctggacct tcggttttcc cgaattggaa
     1681 cctgacggca ctgagcggat cgcggcggcc aagcgggtca gcaatcccgg ctgctggtcc
     1741 accggctttc ttgccattgc gcggccgctg ctacgcgccg gcctgatccc ggcggatttt
     1801 ccgctgaccg ccaatggcgt ctccggctat tccggcggcg gcaagagcat gatcgcggag
     1861 ttcgaggaca agaaggccgc cgactacacc gaaacggtgt cgcgtatcta cggcctgaac
     1921 ctggcgcaca agcacattcc cgagatgcag aaacattccg gcctggcgca tccgcctgtg
     1981 ttcgagccca gcatcggccg cttctatcgc ggcatgctgg tagaagtgcc gctgcaattg
     2041 tgggcactgc cgggcaagcc ttcggcacgc gacatccatg ccgcgctgct gcgggcctat
     2101 cccgaacggc cgctggtgaa ggtggcgtcg ctggaggacg ctacggcggt caaaagcctg
     2161 gatgcggaaa ttctggcggg cacaaacggc ctgacccttt atgtcttcgc caatgaaaag
     2221 tcggcacagg cgcgcctggt cgcggccttc gacaatctgg gcaagggcgc cggcggcgcg
     2281 gcggttcaga acctcaacat catgctggga ttgccggaga cgacgggcct gtaatctgtg
     2341 ctagaagcgg ccatgtctcg gacctggcta ggcattggga tcgtgttcgc ggtggcgctg
     2401 gtgctgtttg ccggcgctgt gctgtatgcc atccatcgcg ccccaaagcc gcgcggcttt
     2461 tccggacttc agttcgcagc cttgaccccg gcggcgtcgg cgcgtacgcc gctgctggcg
     2521 cggggcgggg cgctggtgct tgcggtgctg gacgacagcc cggcggaccg ggccgggatc
     2581 aagccgggcg aagtgctggc cgcgatcgac ggcacccaga ttgcctcggc acgccaggcc
     2641 tccgatatgg tgcgcagcca cagggtgggt gatcgcgttg tcctgacgct ctacgacgtc
     2701 accaagggtg aggtgaagcc cgccactgtc tcgctgacct ttgatgccgc gccgccggtg
     2761 ggcaagacgt tttccgtgca tccgccgcgc accttggcca aggaggtctt taatctgccg
     2821 ttccccgccg ccaacgcctc ctggtcgcgg cggctgtatc tgggtcccac catccgcccc
     2881 ttggcgctga gcgggctggg ggcagggcaa tgcaacggtt tcgcgccgga ggaatggcgg
     2941 gtggccggct atacgccgga caattcgctg ttccatgtca tggccaaggc gggctttgcc
     3001 catgccattt tcaaatcggc ggcgctgaac ggcgccagcc ccgatgcctt cgttctggat
     3061 ttcctgcaaa ccaccttcgg cgcgcccacc gtgatgacac cgccgcagga ccggccctac
     3121 ggcttcgtgg tgcgcgactt cggcaacaac aagggcggcg cgggctttgt ggaatatcgc
     3181 gtcacggcgg gccgcatcgc cttatgggtg gccgcggtgc cgggcggcga tgtcgcctgg
     3241 gccaagccgc tggtcggagc ggtggcgctg tccatgcgct gcgccgcgcc gg
//
LOCUS       DATMDK010000045         2911 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1622581,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000045 DATMDK010000000
VERSION     DATMDK010000045.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2911)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2911)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2911
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1622581"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(50..1042)
                     /locus_tag="VNN98_00870"
     CDS             complement(50..1042)
                     /locus_tag="VNN98_00870"
                     /inference="COORDINATES: protein motif:HMM:NF019474.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HWM60666.1"
                     /translation="MDRRNMIGLGLAAAALSKQALADTLMPGDGSVPSDPKEIVTLWP
                     GTPPGGEGLHLLNRIQNRDPGAAPVDRYIDQIGNPSMIVFRPDRPDGSAMIVAPGGSY
                     LREMMDFEGTDVARRFNAAGVTVFVLRYRLPGEGWQNRSDVPLQDAQRAMRLVRANAA
                     KYALDPARIGFMGFSAGGHVACSIATRFAAKVYPPLDAADAADARPSFSVPIYPVVTM
                     GEGCHAGSRDKLLGPGPAPALVDAYSCEKHVPADTPPTWMCLAADDTTVPPIPNAVAY
                     FTALRAAAIPAEIHIFEAGGHGFGLSKTVGKPDAAWPDLLLRWGAGRGIFKMAV"
     gene            1153..2145
                     /locus_tag="VNN98_00875"
     CDS             1153..2145
                     /locus_tag="VNN98_00875"
                     /inference="COORDINATES: protein motif:HMM:NF024109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HWM60667.1"
                     /translation="MKLRLAFAFLFLASAVAADEGPAYGPQLEGYDYPFPVQHYRFQS
                     QSEAMDMAYMDVKPASPNGHTVALLHGKNFCAATWKATIAVLTGAGYRVIAPDQIGFC
                     KSTKPAHYQYSFEQLAANTHALLASLGVSRAIIMGHSMGGMLATRYALTYPDSTEQLV
                     SVNPLGLEDSRAKGVPPTGVDQLYQTALKTTADSIRDYERTVYYAGTWKPEYEPWVQM
                     QAGMYRGAGREAMAWNSALTSEMIYTQPVIHELERLTMPVLLLIGDKDTTGRSNAVPP
                     AIRASLGNFPVMAKEAAARIAHAKLVEFPDLGHSPQIQDPAAFHKALLDGLVKP"
     gene            complement(2135..>2911)
                     /locus_tag="VNN98_00880"
     CDS             complement(2135..>2911)
                     /locus_tag="VNN98_00880"
                     /inference="COORDINATES: protein motif:HMM:NF042769.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HWM60668.1"
                     /translation="VRAISQIQMPGFFVYRPAKPNGLGLLVIPGGGYASEGGDRGGRE
                     IAQHFAALGIACFVLRYRLPGEGWKDRSDVPLQDAQRAMRLIRRDAAKYGVDPARLAA
                     IGFSAGGHLSASLAIRHAAKVYAPADSADALDARPIIAGHMYPVITMGDGAHAGSRDK
                     LLGESPSADTVAMYSLGRHVAADTVPSFICLATDDDVVPPFPNGITFFGTLREAKIAS
                     ELHVFEVGGHGFSLHWAQGQPCGAWPELFAAWAATHGFKA"
BASE COUNT          563 a          951 c          919 g          478 t
ORIGIN      
        1 gcgcgagcgc tgcgccgcat aagcgcgatc aaagatcgcg caacagaaat taaaccgcca
       61 ttttgaaaat gccgcggccg gcgccccagc gcagcagcag atcgggccag gccgcatccg
      121 gcttgccgac cgtcttgctg aggccaaagc catggccgcc cgcctcgaag atgtgaatct
      181 cggcagggat ggcggcggcg cgcagggcag tgaaataagc caccgcgttg ggaatgggcg
      241 gcacggtggt gtcgtcggcg gccaggcaca tccaggtcgg cggcgtgtcg gcggggacat
      301 gtttctcgca ggaataggca tcgaccagcg ctggcgcggg gcccgggccc aacagcttgt
      361 cgcgcgagcc cgcatggcag ccctcaccca tagtgacgac gggatagatc ggcaccgaga
      421 agcttgggcg cgcgtccgcc gcatcggcgg catccagcgg cggatagact ttcgctgcga
      481 aacgggtggc gatggagcag gcgacatgcc cacccgccga aaaacccata aagccgatgc
      541 gcgccgggtc cagggcatat ttggcggcat tggcgcgcac cagccgcatg gcgcgctggg
      601 cgtcttgcag cggcacgtcg ctgcggttct gccagccttc gccgggcaac cggtagcgca
      661 gtacgaaaac agtgacgccg gcggcattga agcgccgcgc cacatcggtg ccttcgaagt
      721 ccatcatctc gcgcaaatag ctgccgcccg gcgccacgat catggcggac ccgtcgggac
      781 ggtcggggcg gaacacgatc atgctgggat tgccgatctg gtcgatatag cggtccaccg
      841 gggcggcgcc gggatcgcga ttctggatgc gattgagcag atgcagtccc tcacctccgg
      901 gtggcgtgcc cggccacaaa gtgacgattt ccttgggatc gctgggcaca ctgccatcgc
      961 ccggcatcag ggtatcggcc agcgcctgct tggacagtgc agcagcggct aacccaagcc
     1021 cgatcatgtt gcggcgatcc atcgtcccct ccacttattt cttggtcgcg cggcgcaggc
     1081 gccgccgctc cggtattttc gccaagcatc tcaccctttt ccttttgcgg gcaaggcgta
     1141 ttgttcgtcg ccatgaagct tcgcctcgct ttcgcattcc tgttcttggc atccgccgta
     1201 gcggccgatg aaggccccgc ctatggcccg caattggaag gttatgacta ccccttcccc
     1261 gtgcagcact atcgtttcca gagccaaagc gaggcgatgg acatggccta tatggatgtg
     1321 aagccggcat cgcccaatgg ccacacggtg gcgttgctgc acggcaagaa tttctgcgcc
     1381 gcgacctgga aggcaactat cgcggtcctg accggcgcag gctatcgcgt gattgcgccc
     1441 gaccagatcg gcttctgcaa atccaccaag cctgcgcact atcaatacag cttcgagcag
     1501 ctggccgcga acacccatgc gctgctggcc tcgctgggcg tttcccgcgc catcatcatg
     1561 ggccattcga tgggcggcat gctggcgacc cgctatgccc tgacctatcc ggacagcacc
     1621 gaacagcttg tcagcgtcaa tccgctgggg ctggaggata gccgcgccaa gggcgtgccg
     1681 ccgaccggcg tcgaccagct ttatcaaacc gcgctgaaaa ccaccgccga cagtatccgc
     1741 gactatgagc gcaccgttta ttatgcgggc acctggaaac cggaatacga accctgggtg
     1801 cagatgcagg ccggcatgta tcgcggcgcg ggccgcgaag cgatggcatg gaattcggcg
     1861 ctgacttccg aaatgatcta tacccagccg gtcatccacg aactggagcg gctgaccatg
     1921 ccggtgctgc tgctgatcgg cgacaaggac acaacgggac gaagcaacgc ggtgccgccc
     1981 gcgatccggg caagtctggg caatttcccg gtaatggcaa aagaagcggc agcgcgcatt
     2041 gcccatgcca agctggtcga gtttcccgat cttggccatt cgccacaaat ccaggacccg
     2101 gcggcgtttc acaaggcgct gctggacggc ttggtcaagc cttaaagccg tgtgtcgcgg
     2161 cccaagccgc aaataattcc ggccaagcgc cgcaaggctg gccttgcgcc caatgcaaac
     2221 tgaaaccgtg cccgcccact tcgaagacat gaagctccga tgcgatcttg gcttcacgca
     2281 gcgtgccgaa gaaagtaatg ccgttgggga acggcggcac cacatcatcg tcggtagcaa
     2341 gacagatgaa ggacggcacg gtatccgccg caacgtggcg gcccagcgaa tacatcgcga
     2401 ccgtgtcggc agacgggctt tcgcccaaca gcttgtcgcg cgaaccggca tgcgcgccgt
     2461 cgcccatggt gatcaccgga tacatatgcc ccgcgatgat gggcctggcg tccagcgcgt
     2521 cggcgctgtc cgccggcgca tagactttcg cggcatgacg gatggccagc gaggccgaca
     2581 gatgcccgcc ggccgaaaaa ccgatcgccg ccagccgtgc cggatcgacg ccatatttcg
     2641 ccgcgtcacg gcggatcaac cgcatggcgc gctgcgcgtc ctgcaacggc acgtcgctgc
     2701 gatccttcca gccctcgccc ggcaggcggt agcgcagcac aaaacaggcg atgcccaagg
     2761 cagcgaaatg ctgggcgatc tcacgcccgc cccggtcgcc gccttcactg gcatagccgc
     2821 cgccaggaat gaccagcagg ccgaggccgt tcggcttggc ggggcgatag acgaaaaagc
     2881 ccggcatctg aatctggctg atggcgcgga c
//
LOCUS       DATMDK010000046         2405 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1396461,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000046 DATMDK010000000
VERSION     DATMDK010000046.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2405)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2405)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2405
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1396461"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..950)
                     /locus_tag="VNN98_00885"
     CDS             complement(<1..950)
                     /locus_tag="VNN98_00885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010395158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IC family P-type ATPase"
                     /protein_id="HWM60669.1"
                     /translation="MSKQQASSVLDPAILIPAIGNAFKKLDPRAMARNPVMFVVEVVA
                     TLTTFLFVRDWIGGQHHLGFAFQINLWLWFTVLFANFAEAVAEGRGKAQAETLRRTRS
                     DTIAKVLADQASKIYSKKPSQLLSRGDLVLVEPGDIIPSDGDVVEGVASVDESAITGE
                     SAPVIRESGGDRSAVTGGTRVLSDYIVVKITATQGSTFLDRMIALVEGAERQKTPNEI
                     ALNILLAGLTIIFVFAVVTIPMFAAYAGGSLSVLVLVALFVTLIPTTIGALLSAIGIA
                     GMDRLVRFNVLAMSGRAVEAAGDVDTLLLDKTGTITLGNR"
     gene            complement(962..>2405)
                     /gene="kdpA"
                     /locus_tag="VNN98_00890"
     CDS             complement(962..>2405)
                     /gene="kdpA"
                     /locus_tag="VNN98_00890"
                     /EC_number="7.2.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010395161.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031004 - potassium ion-transporting
                     ATPase complex [Evidence IEA];
                     GO_function: GO:0008556 - P-type potassium transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006813 - potassium ion transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit KdpA"
                     /protein_id="HWM60670.1"
                     /translation="AVLPYSPQGMAAATPDLSFNTSISFIANTNWQSYGGETTLGYLV
                     QMLGLTVHNFLSAATGIALALALIRGFARRSARTVGNFWVDLTRCTLYVLLPMALVMA
                     LFLVWQGVPQNLGAYTQAVGLEGVKQLIAQGPVASQEAIKMLGTNGGGFFNVNSAHPF
                     ENPTGLTDFVEMWSILVVSAALTYTFGRMVKDTRQGWAIFAVMGLLFLGGLVPTYWAE
                     SQGNAAVAAAHVVQHGNMEGKEVRFGVANSTLWATATTDASNGSVNSMHDSFTPIGGM
                     IPIINIELGEIVFGGVGSGIYGMLLFAITAMFVAGLMVGRTPEYLGKKIEAKEVKMAM
                     LAILCLPLSILGFTALASVTKFGLAGPLNTGPHGFSEILYTFTSATGNNGSAFAGISA
                     NTPFYNTTIGFAMLVGRFLFIVPMMAVAGALAAKKIVPASAGTFPTHGGLFIGLLIGV
                     ILIVGGLTFFPALSLGPIVEHLAMQAGTFF"
BASE COUNT          503 a          723 c          773 g          406 t
ORIGIN      
        1 tggcggttgc ccagggtgat ggtgccggtc ttgtccagca gcaatgtgtc cacatcgccc
       61 gctgcctcca cggcgcggcc cgacatggcc aggacgttaa agcgcaccag ccggtccatg
      121 ccggcgatgc cgatagctga tagcaaagcg ccgatggtgg tggggatcaa agtgacgaac
      181 agcgccacca gcaccagcac gctcaaggat ccgccggcat aggccgcgaa catgggaatg
      241 gtcaccactg cgaagacgaa gatgatggtc aggcccgcca acaggatgtt gagcgcgatc
      301 tcattgggag tcttttgccg ttcggcgccc tcgaccaggg cgatcatgcg gtccaggaag
      361 gtgctgcctt gggtggcggt gatcttgacc acgatatagt cggacagcac gcgggtgccg
      421 ccggtcaccg ccgaccggtc gccgccggat tcgcggatca ccggcgcgct ttcgccggtg
      481 atagcgcttt catccacgct ggcgacgcct tcgaccacgt caccgtcgga cggaataatg
      541 tcgcccggct cgaccagcac cagatcgccc cgcgataaaa gttgcgacgg cttcttggaa
      601 tagatcttgg aggcctgatc ggccaaaacc ttggcgatgg tgtcgctgcg ggtgcggcgc
      661 agagtctcgg cctgggcttt gccgcgcccc tccgccaccg cttcagcaaa gttggcgaac
      721 agcacggtga accacagcca cagattgatc tggaaggcga agcccagatg atgctggccg
      781 ccgatccagt cgcggacgaa caggaaggtg gtgagggtgg ctacgacctc caccacgaac
      841 atcaccggat tgcgcgccat cgccctggga tcgagcttct tgaaggcgtt gccgatcgcc
      901 gggatcagga tggcggggtc caacacgctg ctggcttgct gcttgctcat gggggaaact
      961 ttcagaagaa ggtgccggcc tgcatcgcca gatgttcgac gatggggcca agcgacaaag
     1021 cgggaaagaa agtgagaccg cccacgatca ggatgacgcc gatcaaaagg ccgatgaaga
     1081 gcccgccatg ggtgggaaag gtgccggcag aggcaggcac gatcttcttg gccgccaagg
     1141 ctcccgccac cgccatcatc ggcacgataa agaggaagcg gcccaccagc atcgcaaagc
     1201 cgatggtggt gttatagaag ggtgtgttcg cggatatgcc ggcaaaagcg cttccattat
     1261 tgcccgtggc cgaagtgaag gtatagagga tttccgaaaa gccgtgcggg cccgtattga
     1321 gcggcccggc caggccgaac ttggtgaccg acgccaaggc cgtgaaaccc agaatagaca
     1381 gcggcaggca gagaatggcc agcattgcca tcttgacctc cttggcttcg atcttcttgc
     1441 ccagatattc cggcgtgcgg cccaccatca ggcccgccac gaacatggcg gtgatggcga
     1501 atagcagcat gccgtagatg ccggaaccga cgccgccgaa cacgatctcg cccagttcga
     1561 tattgatgat gggaatcatg ccgccgatgg gcgtgaagct gtcatgcatg gaattgacgc
     1621 tgccgttgga ggcgtcggtc gtagccgtgg cccatagcgt ggaattggcg acgccgaagc
     1681 gcacctcctt gccctccatg ttgccatgtt gaaccacatg cgcagcggca acggcggcgt
     1741 tgccctggct ttccgcccaa taggtgggga caaggccgcc caggaacagc agacccatca
     1801 cggcaaagat cgcccagccc tggcgagtgt ccttgaccat gcggccgaag gtgtaggtca
     1861 gcgcggcgct gaccaccagg atggaccaca tctcgacgaa atcggtcagg ccggtgggat
     1921 tctcgaaagg atgcgccgaa ttgacgttga agaagccgcc gccattggtg cccagcatct
     1981 tgatcgcttc ctgcgatgcc accggccctt gcgcgatcag ctgcttgacg ccttccaggc
     2041 caacggcctg tgtataggcg cccagattct gcggcacgcc ctgccacacc aggaacagcg
     2101 ccatcacaag cgccatgggc agcagcacat agagcgtgca gcgggtgaga tcgacccaga
     2161 aattgcccac cgttctggcg gaacgccgcg cgaagccgcg aatcagggcc agggccaggg
     2221 caatgccggt agcggcgctg agaaagttat gaacggtcag gcccagcatc tgcaccagat
     2281 agcccagcgt ggtttcgccg ccataggact gccagttggt gttggcgatg aaactgatcg
     2341 aagtgttgaa ggacaggtcc ggggtggccg ctgccattcc ttgcgggctg tagggcagca
     2401 ccgcc
//
LOCUS       DATMDK010000047         2306 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1851431,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000047 DATMDK010000000
VERSION     DATMDK010000047.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2306)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2306)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2306
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1851431"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            194..1726
                     /locus_tag="VNN98_00895"
     CDS             194..1726
                     /locus_tag="VNN98_00895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017977616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HWM60671.1"
                     /translation="MKGKTNIWRVKSLDAVLRTAEKKSLRRSLGPVQLTLLGIGGVIG
                     TGIFVLTAEAAQKAGPGMMLSFVIAGAVSACAAFCYAELASMVPVSGSSYTYTYAVLG
                     ELMAWLVGWALVLEYAVAASAVSVGWSGYIVGLLAHLPHPIIIPPALAGGPDAGGVIN
                     LLAVFIALVITTLLVIGTRESANVNACLVAVKLVALVAFIWLALPVMTATNFHPFAPL
                     GTSGIISAAASIFFGYVGFDAVSTAAEETRDPQRNLPIGLIASLSICTVIYLLVAAGA
                     IGSYGAQPVFGPHGEILEPGSMALGQVCAGFTSQPVACSHEALAHVLRSIHHPLVGNL
                     LGLAAGIALPTVILMMIYGQTRIFFVMSRDGLLPEILSSVHPKFRTPHVVTWITGIAV
                     AFGAAFLPVGQLADFSNSGTLFGFGVVALSVLVLRRTQPDRHRPFRSPLIWVFAPLAI
                     IGCVTLFFFLPWKAQVLFPIWSAIGLVGYYTYGYRHSHVGRGHPEVPELDPDAPSGPI
                     AD"
     gene            complement(1728..>2306)
                     /locus_tag="VNN98_00900"
     CDS             complement(1728..>2306)
                     /locus_tag="VNN98_00900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015823824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015116 - sulfate transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0008272 - sulfate transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SulP family inorganic anion transporter"
                     /protein_id="HWM60672.1"
                     /translation="GGLPHGLPLPRLPVITVPLLLQVLPAALSFTLLGGVESLLSAKV
                     ADSMTGRKHRSNMELVAQGIANMASALFGGISVTGTIARTATNVRAGAHSPMSGILHA
                     GFLLLFLLVAAPLASFVPLAALAGVLVVVCWNMAEKKEVWRLMHYWREAAVLLVTFGL
                     TMLKDLTWGIVAGCVLAALFAALRRGIAEEGA"
BASE COUNT          381 a          760 c          723 g          442 t
ORIGIN      
        1 tgatgcagga cattgtggag catgcccgta ccggccagct ggcgatcgtg ccgcgctgct
       61 cctatgcccg cgcctggttc gaccgccatc ccgaggccca ggacgtgttg aactgatttc
      121 tcacaagaag gcgacatgtc acataggcga cggttgcatg aacggatcga attgcgccca
      181 tgacggggaa aaagtgaagg ggaaaacaaa catctggcgg gtcaaatccc tcgacgcggt
      241 ccttaggacc gcggagaaga aaagcctgcg ccgcagcctg gggcccgtcc agctcaccct
      301 gctgggaatc ggcggcgtca tcggcaccgg cattttcgtg ttgacggcgg aagcagccca
      361 gaaggccggc cccggcatga tgctgtcctt cgttatcgcg ggcgcggtca gtgcctgcgc
      421 cgccttctgc tatgccgagc tggcctcgat ggtgccggtt tcagggtctt cctacaccta
      481 tacatatgcc gtgttgggag agttgatggc ctggctggtc ggctgggccc tggtcttgga
      541 atatgccgtg gccgccagcg ccgtgtccgt gggctggtcc ggttatatcg tcggcctgct
      601 cgcgcacctg ccccacccca tcatcattcc gcccgcactg gccggagggc ccgatgccgg
      661 cggggtgatc aacctgctgg cggtgttcat cgcgctggtg atcaccaccc tgttggtgat
      721 cggcacgcgc gaaagcgcca acgtcaatgc ctgccttgtg gcggtcaagc tagtggcgct
      781 ggtggctttc atctggctgg cgctgccggt gatgacggcg accaatttcc atcctttcgc
      841 gcccttgggc accagcggca tcatctccgc cgctgcctcc atattcttcg gttatgtcgg
      901 cttcgatgcc gtttccaccg cggccgagga aaccagggac ccgcaacgca atctacctat
      961 cgggctgatc gccagcctgt cgatctgcac tgtcatctac ctgttggtcg cggcgggcgc
     1021 gatcggctcg tatggcgccc agccggtatt cggcccgcat ggcgaaattc tggagcccgg
     1081 ttccatggcg ctggggcaag tctgcgccgg cttcaccagc cagcccgtgg cctgcagcca
     1141 cgaggcgctg gcccatgtgc tgcgctccat ccatcatccg ctggtgggaa atctgctggg
     1201 gctggcggcc ggtatcgccc tgcccaccgt catcctgatg atgatctacg gccagacccg
     1261 catcttcttt gtgatgtcgc gcgacgggtt gctgccggaa atcctttcca gcgtgcatcc
     1321 gaaattccgc accccgcatg tcgtgacctg gattaccggc atcgcggtcg ccttcggcgc
     1381 cgccttcctg ccggtggggc agctggctga cttctccaac tccggcaccc tgttcggttt
     1441 cggcgtggta gcgctgtcgg tgcttgtact gcgccggacc caaccggacc gtcatcgccc
     1501 ctttcgctca ccgctgatct gggtgttcgc gccgctggcc atcatcgggt gcgtcaccct
     1561 gttcttcttc ctgccatgga aggcgcaagt gctgtttccc atctggtcgg caatcgggct
     1621 ggtcgggtat tacacctatg gctaccgtca cagccatgtc gggcgcggcc atcccgaagt
     1681 accggaactt gatccggacg cgccatctgg accgatcgcc gattgaatca ggcgccttct
     1741 tcggcaatgc cgcgccgtaa cgcggcgaac aaagcggcca gcacgcagcc cgccacaatg
     1801 ccccaggtga ggtccttgag catggtgagc ccgaaggtga cgagcaggac cgccgcctcg
     1861 cgccaatagt gcatcagacg ccagacctct ttcttctcgg ccatattcca gcacaccacc
     1921 accagcacgc ctgccagcgc cgccagcggc acgaagctgg ccagcggggc tgccaccagc
     1981 aaaaacagca gcaggaagcc ggcatgcagg atgccggaca tcgggctgtg cgcgccggcc
     2041 cgcacattgg tggcggtgcg ggcaatggtg ccggtgacgc tgatcccgcc gaacagggcg
     2101 gaggccatgt tggcgatgcc ctgagcaacc agctccatgt tggaacgatg cttgcggccg
     2161 gtcatgctgt cggcgacctt ggccgagagc aggctttcca cgccgcctag caaagtgaat
     2221 gacagggcgg caggaaggac ctgcagcaac agcggcaccg tgatgaccgg cagacgcggc
     2281 agcggcaaac cgtgcggcag gccgcc
//
LOCUS       DATMDK010000048         2228 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2079584,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000048 DATMDK010000000
VERSION     DATMDK010000048.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2228)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2228)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2228
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2079584"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(98..388)
                     /locus_tag="VNN98_00905"
     CDS             complement(98..388)
                     /locus_tag="VNN98_00905"
                     /inference="COORDINATES: protein motif:HMM:NF017935.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF983 domain-containing protein"
                     /protein_id="HWM60673.1"
                     /translation="MFSGYIALKKECPACALDYAMFDAGDGPMVFGILIVGAIVCGLA
                     LWVEFTFQPPLWVHAVLWIPLICLLTAIFLRLSKSALLVLQFKHKAGEGRVE"
     gene            complement(450..1361)
                     /locus_tag="VNN98_00910"
     CDS             complement(450..1361)
                     /locus_tag="VNN98_00910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009827704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase subunit 3"
                     /protein_id="HWM60674.1"
                     /translation="MSSDVKHDYHLVDPSPWPLVGSIGAFTMLIGAVFWMNKDYTGFF
                     GLPVNGQPWIFFVGLALVLYTMAGWWRDVIRESVVLGNHTPVVKLHLRYGMLLFIASE
                     VMFFVAWFWAFFNASIFHADVGVPSWPPAGIVTLDPWHFPLLNTLILLTSGTTVTWAH
                     HAIQTGDRKGAIQGLILTVLLGFSFTCVQAYEYAHAPFTFGFNNLALAPFTDAAHMAL
                     ASGAGNFEAIYGSTFFMATGFHGFHVIIGTIFLTVCLFRAIAGQFTPTRHFGFEAAAW
                     YWHFVDVVWLFLFACIYVWGEGPVVAG"
     gene            complement(1500..>2228)
                     /locus_tag="VNN98_00915"
     CDS             complement(1500..>2228)
                     /locus_tag="VNN98_00915"
                     /EC_number="2.5.1.141"
                     /inference="COORDINATES: protein motif:HMM:NF003349.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008495 - protoheme IX farnesyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0048034 - heme O biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="heme o synthase"
                     /protein_id="HWM60675.1"
                     /translation="CLNMAYDSDIDGLMTRTATRPIPMGYVAREDALAFGWTLSVAAV
                     ATMGLFVNFLAAGLLAFTVFFYVVVYTLWLKRRTPQNIVIGGLSGALPPAIGWAAVTG
                     DLSLAPLLLVAIIFMWTPPHFWALSLWRSDDYARAGVPMLPVVKGKPHTRFQILLYTL
                     VLAPLGVLPAFLHIGGALYLAASAGIGLWFLWEAIATYREKNETKEPAAHRLFGVSLL
                     YMTALFAALIIEKLIGLPALALWS"
BASE COUNT          530 a          680 c          704 g          314 t
ORIGIN      
        1 ttccattgca gcctttgcaa ctgccacgta cccaaagcgc ataaaatcgc aaataggatg
       61 gcgcaggcaa tggtgaggcc gggatagggc cgcaaggtca ttcgacccgt ccttcgcccg
      121 ccttatgctt gaattgcagc accagcagcg ccgacttgga caggcgcagg aagatcgccg
      181 tcagcaggca gatcagcggt atccaaagca cggcatggac ccagagcggc ggctggaagg
      241 tgaactcaac ccacagcgcc agcccgcaaa cgatagcacc cacgatgaga atgccgaaca
      301 ccatgggccc gtcgcccgca tcgaacatgg catagtccag ggcgcaggcc gggcattctt
      361 tcttcagggc gatatagccg gaaaacaacg gcccctgccc gcaacgcgga cagaggccga
      421 ggaagatggc tctaatggtg ctgggcgcct caaccggcga caactggacc ctcgccccac
      481 acataaatgc aggcaaagag gaacagccac accacgtcga cgaaatgcca gtaccaggcc
      541 gctgcctcga aaccgaaatg gcgggtggga gtgaactggc ccgcgatggc gcggaacagg
      601 cacacggtca gaaagatggt gccgatgatg acatggaagc cgtgaaagcc ggtggccatg
      661 aagaaggtcg agccgtagat cgcctcgaaa ttgcccgcgc cgctggccag cgccatatgc
      721 gccgcgtcgg tgaagggcgc cagcgccaga ttgttgaagc cgaaggtgaa gggggcatgg
      781 gcatattcat aagcctgcac gcaggtgaag ctgaagccca gcagcacggt gaggatcagg
      841 ccctggatcg cgcccttgcg gtcaccagtc tggatagcat gatgcgccca ggtcaccgtg
      901 gtgcccgagg tgagcaggat cagggtgttc agcagcggga aatgccacgg gtccagggtg
      961 acgatgccgg ccggcggcca gctcggcacg cccacatcgg catggaagat ggaagcgttg
     1021 aaaaaggccc agaaccaggc gacgaagaac atcacttccg acgcgatgaa cagcagcatg
     1081 ccatagcgca gatgcagctt caccaccggg gtgtggttgc ccagcacaac cgattcgcgg
     1141 atcacgtcgc gccaccagcc ggccatggtg tagagcacca gcgccaggcc gacgaagaaa
     1201 atccagggct ggccgttcac cggcaggccg aagaagccgg tgtaatcctt gttcatccag
     1261 aacacggcgc cgatcagcat ggtgaaggcg ccgatcgagc cgaccagggg ccaggggctg
     1321 gggtccacca ggtgataatc gtgcttcaca tcgctgctca taggcttagc ccctctagtg
     1381 gccggaatgt tcgtgccatt gcacgatgga catcaggtaa aacaagataa cgacaccggc
     1441 gagcgtgagc cccagtgcga tattgcgttt gcggcgggcg cggcctgcat cgtcatccct
     1501 cacgaccaca acgccaaggc gggaaggcca atcagttttt cgatgatcag ggccgcgaac
     1561 agcgccgtca tatagagcag cgacacaccg aacaggcgat gagccgcggg ctccttggtt
     1621 tcattctttt cgcgataggt ggcgatggct tcccacagga accacaagcc gatccccgcc
     1681 gaggccgcga gataaagcgc cccaccaata tgcaggaacg cgggcagcac gcccagcggc
     1741 gccaatacca aggtgtagag caaaatctgg aaccgggtgt ggggcttgcc tttcaccacc
     1801 ggcagcatcg gcaccccggc gcgggcataa tcatccgaac gccacaagga cagggcccag
     1861 aaatgcggcg gcgtccacat gaagatgatc gccaccagca gcagcggcgc caggctgaga
     1921 tcgccggtca cagcggccca gccgatggcg ggcggcagcg cgcccgacaa tccgccgatc
     1981 acgatattct gcggcgtgcg gcgcttgagc caaagcgtat agaccacgac atagaagaag
     2041 acggtgaaag ccagcagccc ggccgccagg aagttcacga acaggcccat ggtggccacg
     2101 gccgccaccg acaaggtcca gccgaaggcc agggcatctt cccgcgccac atagcccatg
     2161 ggaatgggcc gcgtggcggt acgggtcatg aggccgtcga tgtcgctgtc ataggccatg
     2221 ttgaggca
//
LOCUS       DATMDK010000049         4932 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_25500,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000049 DATMDK010000000
VERSION     DATMDK010000049.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 4932)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4932)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4932
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_25500"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1180)
                     /locus_tag="VNN98_00920"
     CDS             complement(<1..1180)
                     /locus_tag="VNN98_00920"
                     /inference="COORDINATES: protein motif:HMM:NF012796.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006418 - tRNA aminoacylation for protein
                     translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminoacyl--tRNA ligase-related protein"
                     /protein_id="HWM60676.1"
                     /translation="MQRALDINRSRFADWYQAVVRDADMAESSPVRGAMVIKPWGYGV
                     WEQIQQELDRRIKATGHDNCYFPMFIPLSFIAKEAEHVEGFAKEMAIVTHHRLKMIDG
                     KLSPDPEAKLEEPLVVRPTSETIIGDAFARWIKSYRDLPLLLNQWANVVRWEMRPRLF
                     LRTTEFLWQEGHTAHASEAEAMEETLKMLEVYRSFAEDTLALPVIAGEKPENERFPGA
                     VNTYSIEAMMQDGKALQAGTSHFLGTHFAEAQSIKFQNDAGGMDFCNTTSWGVSTRLI
                     GGVIMTHGDDDGLRLPPAIAPKQIVVVPMLRDKPEDAEVLKYCTDLVAMLSKEVVFGQ
                     KLRAHLDIKKIKSAEKRWNWVRRGAPIIIEIGPRDAAGGVVTYMRRDDLRDGDKVKST
                     P"
     gene            complement(1206..2426)
                     /locus_tag="VNN98_00925"
     CDS             complement(1206..2426)
                     /locus_tag="VNN98_00925"
                     /inference="COORDINATES: protein motif:HMM:TIGR00710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug effflux MFS transporter"
                     /protein_id="HWM60677.1"
                     /translation="MAANDSFTRPSITGTRRIELIALFGLLTVFTPIGIDLYLPALPS
                     ISREFHAPIAQIEHSLAAFFLGLCLGQVMIGPISDRFGRRWPILIGLGLYVLGAIGCA
                     LAQGPLTLDAARFLEAVGGCAGTVLARSCVRDLFPPQDAARIFAQMLLILSVSPLFAP
                     FVGGWLLPLTGWRSLFWLQGAAALLTWGFVWRLLPESHPGSDRRLHPLAVLEDYWAIA
                     RDRRFFRFIIPATLTGAGLYVFLTGWPHVVIDLFHIRPQYFGFTFVLNGIGLIVFSQG
                     AARWLKHRPGEPLFFAALLANAVAGCLALVFGITGWAGLLGLLPWTFVYCAMIGSINA
                     TGSGLAMHHFGHAAGMASALIGIFLYGGGTLASALMGAFVTPATPVPLTGLMALFGVS
                     GVATYLLFRPRTAG"
     gene            2572..3795
                     /locus_tag="VNN98_00930"
     CDS             2572..3795
                     /locus_tag="VNN98_00930"
                     /inference="COORDINATES: protein motif:HMM:TIGR02212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_process: GO:0042953 - lipoprotein transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein-releasing ABC transporter permease
                     subunit"
                     /protein_id="HWM60678.1"
                     /translation="MIAARYLRAKRQESFISVISLFSLIGIALGVATLIIVMSVMNGF
                     RVELLKSILGLSGHVTVQSQMGNMADYDAVTARVRAVPGVVRAVPVVDGQVMASQNGA
                     NAGVVVRGIRRADLAKLTVVAEKLRAGSLNYFDRDDVVIVGAGLAAKLGVRVGGDITL
                     IAPKGDVTPFGATPRVKTYHVISSFHIGNTLYDSNYIFMPLNEAQLYFNTGDTVSGIE
                     VMIGDPEVDLGMLPALTKAAGPLMRAVPWQDINSAFFEAIQVESNVMFLILSLIILVA
                     ALNIVSGLIMLVKDKSADIAILRTMGATRGAVMRIFFIAGASIGVSGTVIGFAIGVLF
                     CANIENIRQGLSRLTGTTLFDPTVYFLSRMPAEMAPGQVAAVVIMALVLTFLATLYPS
                     WRAARLDPVEALRYE"
     gene            3788..4480
                     /locus_tag="VNN98_00935"
     CDS             3788..4480
                     /locus_tag="VNN98_00935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017978623.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HWM60679.1"
                     /translation="MSDVLRLEDITRRYREGEGQLEVFSGLGLTVKPGEIVALVGPSG
                     AGKSSLLHIAGLLEAPTSGEIFIEGMAVSRLSDTERTRIRRDKVGFVYQAHHLLPEFD
                     ALENVILPQMIAGHSRNEAAKEAERLLTVLGLGQRLTHRPSQLSGGEQQRVAIARALA
                     NKPRLLLADEPTGNLDPRTSGGVFEALIAITRSEGLGALIATHNFELASRMDRALLLH
                     QGKLIEGTQVPR"
BASE COUNT          920 a         1496 c         1630 g          886 t
ORIGIN      
        1 agggcgtgga tttgaccttg tcgccgtcac gcaggtcgtc gcgccgcata taggtcacca
       61 cgccgcccgc cgcatcgcgc ggtccgatct cgatgatgat gggggcgccg cggcgcaccc
      121 agttccagcg tttttctgcc gacttgatct tcttgatgtc cagatgggcg cgcagcttct
      181 ggccgaacac cacttccttg gacagcatgg ccaccaggtc ggtgcagtat ttcagcacct
      241 cggcatcttc cggcttgtcg cgcagcatcg gcaccaccac gatctgcttg ggcgcgatgg
      301 cggggggcag gcgcaggccg tcatcgtcgc catgggtcat gatcaccccg ccgatcagcc
      361 gggtggaaac gccccagctg gtggtgttgc agaaatccat gccgcccgcg tcattctgga
      421 acttgatgct ctgagcctcg gcaaaatggg tgcccaggaa atgcgaggtg ccggcctgca
      481 gcgccttgcc gtcctgcatc atggcttcga tggaataggt gttcaccgcg ccggggaagc
      541 gttcgttctc cggcttctcg cctgcgatca ccggcagggc cagagtgtct tccgcaaagc
      601 tgcgatagac ttccagcatc ttcaaggtct cttccatcgc ctcggcctcg ctggcatggg
      661 cggtgtggcc ctcctgccag agaaattcgg tggtgcgcag gaacaggcgg gggcgcattt
      721 cccagcgcac cacattggcc cattggttga gcagcagcgg cagatcgcgg taactcttga
      781 tccagcgcgc gaaggcgtca ccgatgatgg tctcggaggt ggggcgcacc accagcggct
      841 cttccagctt ggcctcggga tcgggcgaaa gcttgccgtc gatcatcttc agccggtgat
      901 gggtgacgat cgccatttcc ttggcgaagc cttcgacatg ctcggcctcc ttggcgatga
      961 aggagagggg gatgaacatg gggaaatagc agttgtcgtg gcccgtggcc ttgatgcggc
     1021 ggtccagctc ctgctggatc tgctcccaca cgccatagcc ccagggcttg atcaccatcg
     1081 ccccgcgcac cggcgaggat tcggccatgt cggcgtcgcg caccaccgcc tgataccagt
     1141 cggcgaaccg gctgcggttg atgtcgaggg cgcgctgcat actggggctc cgtgttgggc
     1201 cgttcttaac ccgccgtgcg gggcctgaac aggagataag tggccacgcc ggacacgcca
     1261 aacagcgcca tcagccccgt gagcggcacc ggggtggcag gggtgacgaa ggcgcccatc
     1321 agcgccgagg ccagggtgcc gccgccatac aggaagattc cgatcagggc ggaagccata
     1381 ccggcggcat ggccgaaatg gtgcatggcc aggccggagc cggtggcgtt gatcgagccg
     1441 atcatggcgc aatagacaaa ggtccagggc agcaggccca agagccccgc ccaaccggta
     1501 atgccgaaga ccagcgccag gcagccggcc accgcattgg ccagcagggc ggcgaaaaac
     1561 agcggctcgc cggggcgatg tttcagccag cgcgcggcgc cctggctgaa gacgatcaat
     1621 ccgatcccgt tcagcacgaa tgtgaagccg aaatattgcg gccggatgtg gaagaggtcg
     1681 atcaccacat gcggccagcc ggtgagaaag acgtagaggc ccgcgccggt gagggtggca
     1741 gggatgataa agcggaaaaa gcgccggtcc cgcgcgatgg cccagtaatc ctcaagcact
     1801 gccaagggat gcaaccggcg gtccgagccg ggatggcttt ccggcagcag ccgccagaca
     1861 aagccccagg tcagcagcgc cgcggcgcct tgcagccaaa acaggctgcg ccagccggtt
     1921 aaaggcagca gccagccgcc gacaaagggc gcgaacagcg gcgacaccga caggatcagc
     1981 agcatctggg cgaagatgcg tgcggcgtcc tgcggcggga acaggtcacg gacacaggac
     2041 cgcgccagca ccgtgccggc gcagccgccc accgcctcga ggaagcgggc ggcgtccagg
     2101 gttagcgggc cctgcgccaa ggcgcagccg atggcgccca gcacataaag ccccaggccg
     2161 atcaggatcg gccagcgccg cccaaaacgg tcggagatcg gtccgatcat cacctggccc
     2221 agacacaggc ccaggaaaaa agccgccagg gaatgttcga tctgcgcgat aggagcgtgg
     2281 aattcccgcg aaatgctggg cagcgccggc aggtacagat cgatgccgat gggagtgaag
     2341 acggtcagca gcccgaacag agcgatcagc tcgatccgcc ttgttcccgt aatgctgggg
     2401 cgggtgaagg aatcgttggc ggccatggaa ccgggtatgg ggccgacggc aaaacagcgc
     2461 aaggctttgt gatggacgga tttgcagtgg ccccttaccg tggccgccat gccggaatca
     2521 gcccccaaaa gcacgtctaa aaatacggga atcttcgcgc cattcgaatg gatgatcgcg
     2581 gcccgctacc tgcgcgccaa gcggcaagaa agcttcattt cggtgatttc gctgttctcg
     2641 ctgatcggca tcgccctggg cgttgccacc ctgatcatcg tgatgagtgt gatgaacggt
     2701 tttcgggtgg aactgctgaa aagcatcctg gggctttcgg gtcacgtcac cgtccagtcg
     2761 caaatgggca acatggccga ttatgacgcg gtgaccgcgc gggtccgcgc cgtgccgggc
     2821 gtggtgcggg cggtgccggt ggtggacggg caggtgatgg ccagccagaa cggcgccaat
     2881 gccggggtgg tggtgcgcgg catccgccgt gccgatctcg ccaagctgac agtggtggcg
     2941 gaaaagctgc gtgccggctc gctgaattat ttcgaccgcg acgatgtggt gattgtgggc
     3001 gccgggctcg ccgccaagct gggggtgcgg gtgggcggcg acatcaccct gatcgcgccc
     3061 aagggcgatg tcacgccctt cggtgccacg cccagggtca agacctatca tgtgatcagc
     3121 agcttccaca tcggcaatac actgtatgac agcaactaca ttttcatgcc gctgaacgag
     3181 gcgcagctct atttcaatac tggcgacacg gtgagcggga tcgaagtgat gatcggtgat
     3241 cccgaagtcg atctggggat gctgccggcg ctgaccaagg cggcggggcc gctgatgcgg
     3301 gcggtgccct ggcaggacat caacagcgct ttcttcgaag ccatccaggt ggaaagcaat
     3361 gtgatgttcc tgatcctgtc gctgatcatt ctggtggcgg cgctgaacat cgtgtctggc
     3421 ctgatcatgc tggtgaagga caaatcggcc gacatcgcca tcctgcgcac gatgggggcg
     3481 acgcgcggcg cggtgatgcg tatcttcttc atcgccggcg ccagcatcgg cgtgtcgggc
     3541 accgttatcg gctttgccat cggcgtgctg ttctgcgcca atatcgaaaa tatccgccaa
     3601 ggcttgtccc ggctgaccgg caccaccttg ttcgatccca ccgtctattt cctgtcgcgg
     3661 atgccggccg agatggcgcc ggggcaggtg gccgccgtgg tgatcatggc cctggtgctg
     3721 accttcctgg cgaccctcta tcccagctgg cgggcggcgc ggctcgatcc ggtcgaggcg
     3781 ctgcggtatg agtgatgttc ttcgtctcga agacataacc cgccgctatc gcgagggcga
     3841 aggtcagctg gaggtgttca gcggtctggg cctgacggtg aagcctggcg agatcgtggc
     3901 gctggtgggg cccagcggcg cgggcaagtc ctcattgctg catatcgccg gcctgctcga
     3961 agcgcctacc agcggtgaga tttttatcga ggggatggcc gtgtcgcgcc tttccgacac
     4021 cgagcgcacc cgtatccgcc gcgacaaggt gggtttcgtc tatcaggcgc atcatctgct
     4081 gccggaattc gatgcgctgg agaatgtgat actgccgcag atgatcgcgg ggcactcgcg
     4141 caatgaagcg gcgaaggaag cggaacgcct gctgactgtg ctgggattgg gccagcggct
     4201 gactcaccgg ccttcgcaat tgtcgggcgg cgagcaacag cgcgttgcca ttgcccgcgc
     4261 tctggccaac aagccgcgcc tgctactggc cgatgaaccc accggcaatc tcgatccccg
     4321 cacttcgggt ggggtgttcg aggccctgat cgccatcacc cgttccgaag gactgggcgc
     4381 gctgatcgcc acccacaatt tcgagctggc gtcacggatg gaccgagcat tgctcttaca
     4441 tcaaggcaag ctgatcgaag gcacgcaggt gccgcgttaa ggtccgtctt cctcaaagat
     4501 taacatcggc accagtttga tccctttttg ttcttgtgtt tcaattggaa ccaaagtaga
     4561 acaaaatcca acgcagggag atagggatca tgtgggtcaa ggatgcggcg gcgggcgcgg
     4621 gactgcttct tttcatggtg tcggcctttg tgctggccag cggcgcgcat gccgtgctga
     4681 cccacctcgc catctgatcg ctgtggccca ataactgtgg atagggcggg ttgcgccccc
     4741 atatcgcaaa caggcgggcg atactgatcg cctgactctt tcggaaaaaa tcccatggcg
     4801 gccttcgtcc atctgcgcgt caagagcgcc tattccctgc tggaaggggc ggtgcggccc
     4861 aaggaattgg ccgagatggc gcgttatgcc ggcacgcccg ctgtggcggt caccgatacc
     4921 aacaacctgt tc
//
LOCUS       DATMDK010000050         2530 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1852582,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000050 DATMDK010000000
VERSION     DATMDK010000050.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2530)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2530)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2530
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1852582"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..667)
                     /locus_tag="VNN98_00940"
     CDS             complement(<1..667)
                     /locus_tag="VNN98_00940"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008134 - transcription factor binding
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma 54-interacting transcriptional regulator"
                     /protein_id="HWM60680.1"
                     /translation="MASTILVCDDDSAIRTVLNQALGRAGYDVRTTGTAAGLWRWVSA
                     GEGNLVITDVVLPDESGFDLIPRIKRMRPELPILVMSAQNTLLTAITAAERGAFEYLP
                     KPFDLKELTSVVSRALVSPQSRRDTGLEPAEDRLPLIGRSPAMQEIYRVIARLTQTDL
                     TVMIMGESGTGKELVARALHDYGKRRHGAFVAVNMAAIPKELVESELFGHERGAFTGA
                     TNRG"
     gene            complement(670..1755)
                     /locus_tag="VNN98_00945"
     CDS             complement(670..1755)
                     /locus_tag="VNN98_00945"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HWM60681.1"
                     /translation="MRSAALADTGTIANALPMPVMLLGSKHEVLYANPAAEQFFDTGL
                     PMLRKQTLADLIAPHSPLFQLVLQAAERNASAAERDIDLSTPRHGERLADVTVTPVPD
                     PEGAMLLTFQERSLAQRMDRQLMARGAVRSMHGMAAVLAHEIKNPLAGIRGAAQLIEE
                     TMAPDEREMTQLIIAEADRIRNLIDRMESFGDTRSFTRHSVNIHEVLDRVRKVAESSF
                     ARGVPIQENFDPSLPAVSGDHDQLIQVFLNLVRNAADALPETGGEITLTTGYRPGVKF
                     GAGLAGDRVSLPLEVTVRDNGSGVPADLLPHIFDPFVTTKVRGTGLGLALVAKIVGDH
                     GGVIECDSVPGRTIFRVLLPQSRSGEI"
     gene            1904..>2530
                     /gene="ispD"
                     /locus_tag="VNN98_00950"
     CDS             1904..>2530
                     /gene="ispD"
                     /locus_tag="VNN98_00950"
                     /EC_number="2.7.7.60"
                     /inference="COORDINATES: protein motif:HMM:NF013308.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050518 - 2-C-methyl-D-erythritol
                     4-phosphate cytidylyltransferase activity [Evidence IEA];
                     GO_process: GO:0019288 - isopentenyl diphosphate
                     biosynthetic process, methylerythritol 4-phosphate pathway
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-C-methyl-D-erythritol 4-phosphate
                     cytidylyltransferase"
                     /protein_id="HWM60682.1"
                     /translation="MSRIAVLIVAAGKGARAGTELPKQYERLGGRPMLRRTVEAFVAH
                     FSNQKCPVQVVIGPGQQDLAAAALAGLDIPAPVIGGATRQESVRLGLEALAKDAPDFV
                     LIHDAARPLISREVTGAVVAALESGADGALPMLAASDTLRRQGADGHWTLVSRENLYR
                     AQTPQGFVYAKIAKAHQDHAHEDVTDDMALAELAGLKVQMVEGEEKNIK"
BASE COUNT          481 a          770 c          829 g          450 t
ORIGIN      
        1 cgccgcgatt ggtggcgccg gtgaaagcgc cgcgctcatg gccgaagagt tcgctttcca
       61 ccagctcctt ggggatcgcc gccatgttga cggccacgaa agcgccgtgg cggcgcttgc
      121 cgtaatcgtg cagcgcgcgc gccaccaact ccttgccggt gccgctttcg cccatgatca
      181 tcacggtaag atcggtctgg gtcaggcgcg cgatgacgcg gtagatttcc tgcattgcag
      241 gcgaacggcc gatcagcggc agccggtctt ccgccggttc caggccggta tcgcgccggc
      301 tctgggggct gaccaaggcg cggctgacca cactggtcaa ctccttcagg tcgaagggct
      361 tgggcagata ttcaaaagcg ccgcgctcgg cggcggtgat ggcggtgagc agtgtgttct
      421 gggcgctcat caccaggata ggcagttccg ggcgcatgcg cttgatgcgc gggatcaggt
      481 cgaaaccgga ttcatcgggc agcaccacat cggtgatgac cagattgccc tcgcccgcgg
      541 aaacccagcg ccacaggccg gccgccgtgc cggtggtgcg cacgtcgtaa ccggcccttc
      601 ccagcgcctg gttcagcacg gtgcggatgg cgctgtcgtc gtcgcagaca agaatggtcg
      661 atgccatgat cagatctccc cgctgcgcga ttgcggcagc agcacgcgaa aaatagtacg
      721 tcccggaacg gaatcgcatt cgatgacgcc gccatgatcg cccacgatct tggcgaccag
      781 cgccagcccc agtccggtgc cgcgcacctt ggtggtgaca aaggggtcga agatgtgggg
      841 caaaaggtca gcgggcacgc ccgagccatt gtcgcgcact gtcacttcca gcggcagcga
      901 aacgcgatcg cccgccaggc cggcgccaaa cttgacgccg ggacggtagc cggtggtcaa
      961 agtgatctcg ccgccggtct cgggcagcgc atcggcagcg ttgcgcacca gattgagaaa
     1021 cacctggatc agctgatcgt gatcccccga caccgccggc agcgaagggt cgaaattctc
     1081 ttgaatgggg acgccgcgcg caaaactgga ctccgccacc ttgcgcaccc ggtccagcac
     1141 ttcgtgaatg ttgacggaat ggcgggtaaa gctgcgggtg tcgccgaagc tttccatacg
     1201 gtcgatcaga ttgcggatgc ggtcggcctc ggcgatgatc agctgggtca tttcccgctc
     1261 atccggcgcc atggtttctt cgatcagctg tgcggcgccg cgaatgccgg ccagtggatt
     1321 tttgatctca tgcgccagca ccgccgccat accgtgcatc gaacgcaccg cgccgcgcgc
     1381 catcagctga cggtccatgc gctgggccag gctgcgttcc tggaaagtga gcagcatggc
     1441 gccttccgga tcgggcaccg gcgtcaccgt cacatccgcc agcctttcgc catggcgcgg
     1501 ggtggaaaga tcgatgtcgc gttcggcggc cgaggcgtta cgctcagcgg cctggaggac
     1561 cagttggaac agcggcgaat ggggagcaat caggtcggcc agggtctgct tgcgcagcat
     1621 gggcaggccg gtatcaaaaa actgctcggc ggcggggttg gcgtagagga cttcatgctt
     1681 gctgcccagc agcatcacgg gcataggcaa agcattggcg atggtgccgg tatcggccag
     1741 ggctgcgcta cgcaatttct gtaaaactcc gaccaagggt tgcctattgt ttgagcataa
     1801 atattacgcg ccgataatat aggcatgata ccgcaaagca acaaaatatc gcactccaag
     1861 ttgttaaatg ttaggcagtc caccggttta cgaaggaact cttatgtccc gcattgccgt
     1921 cctgatcgtt gccgccggca agggcgcccg cgccgggaca gagctaccca aacaatatga
     1981 acggctgggc ggccgcccga tgctgcgccg gacggtggag gcttttgtcg cccacttttc
     2041 caatcaaaaa tgtccggtgc aagtggtgat cggcccgggg caacaggatc tggccgccgc
     2101 cgcgctggca ggcctggata tccccgcccc tgtcattggt ggggcgactc gccaggaatc
     2161 ggtcaggctg ggattggagg cactggccaa ggatgcgccc gacttcgtgc tgatccatga
     2221 tgcggcgcgg ccgctgatct cgcgcgaagt gaccggcgcc gtggtcgcgg cactggaatc
     2281 aggcgcggac ggggccctgc ccatgctggc ggccagcgac acgttgcgcc ggcaaggcgc
     2341 ggacgggcac tggactttgg tgtcgcgcga gaatctttat cgcgcccaga cgccccaggg
     2401 ttttgtctat gccaagatcg ccaaggcgca tcaggatcat gcccacgaag acgtcaccga
     2461 tgatatggcg ctggcggaac tggcgggatt gaaagtgcaa atggtcgaag gcgaagaaaa
     2521 gaacatcaag
//
LOCUS       DATMDK010000051         2092 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_710664,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000051 DATMDK010000000
VERSION     DATMDK010000051.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2092)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2092)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2092
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_710664"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..496
                     /locus_tag="VNN98_00955"
     CDS             <1..496
                     /locus_tag="VNN98_00955"
                     /inference="COORDINATES: protein motif:HMM:NF014385.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HWM60683.1"
                     /translation="ASYGPVSQLSNLFGPAGFVWSIGASVLQTIFDGGAIHAQNDQAR
                     AVQQELIAAYRKAVFTAFSDVESTLGTVKSTSDQLVLVDVETKADAEAFRISELQYRE
                     GTIDILSLLQNQQNLFNAQDSLVQTKLARLEANLALYNALGGGWEQKADDAGYKNQLD
                     WWPL"
     gene            complement(712..1686)
                     /locus_tag="VNN98_00960"
     CDS             complement(712..1686)
                     /locus_tag="VNN98_00960"
                     /EC_number="1.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012472.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HWM60684.1"
                     /translation="MEKVRLGNTGLKVSRICLGTMTYGDPKWRDWVLDEAASRPFLQR
                     ALEIGINFFDTADMYSNGASEEVVGRALKDFAEKREDTVLATKVFFPTDGRHGGLSRK
                     HILHAIDDSLRRLGTDYVDLYQIHRFDHATPIEETIEALHDVVKCGKARYIGASSMHA
                     WQFAKYLSTAEKMGMTKFVSMQNFYNLVYREEEREMLPLCRDAGVGVIPWSPLARGFL
                     GRSHAKALEKQSTRAKSDNVLDMAFDDADIETLSRVEQIGKQRGKNNAQIATAWLLAK
                     GITAPIIGASKMSHLDDAVAAAEIKLTAEEIASLDAPYKPKAVAGNLQ"
     gene            complement(1717..>2092)
                     /locus_tag="VNN98_00965"
     CDS             complement(1717..>2092)
                     /locus_tag="VNN98_00965"
                     /inference="COORDINATES: protein motif:HMM:NF024375.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HWM60685.1"
                     /translation="TPGVLRSYIGGDLSNVHWRQMGPRLSYLPLFRRGAVSARLLRGV
                     PGADSGAHSHEGQEYTVVLRGGFTDVTGNYGPGDLQVMGGGTRHNVVADPGEDCINLA
                     VTTGKLKFESLLQRIAAPLFGF"
BASE COUNT          397 a          660 c          627 g          408 t
ORIGIN      
        1 cgccagctac ggtccggtgt cgcagctttc caacctgttc gggcccgccg gctttgtctg
       61 gagcatcggc gccagcgtcc tgcagaccat cttcgacggt ggcgccatcc atgcccagaa
      121 cgaccaggcg cgggcggtgc agcaggagct gatcgccgcc taccgcaagg ccgtcttcac
      181 cgccttcagc gacgtggaaa gcacgctggg cacggtgaaa agcaccagcg accagctggt
      241 gctggtggac gtggagacca aggccgatgc cgaagccttc cgcatctccg aactccagta
      301 ccgcgaaggc accatcgaca tcctgtcgct actgcaaaac cagcagaatc tgttcaacgc
      361 ccaggattcc ttggtgcaga ccaagctggc gcggctggaa gccaatctgg cgctgtacaa
      421 tgcgctgggc ggcggctggg agcagaaggc ggacgacgcc ggctacaaga accagctcga
      481 ttggtggccg ctgtaaagcc atcaaccaag gcagaaaaag ggcgcccttc gtggcgccct
      541 ttttgtttcg ttagagccgt tttggattaa atataattcc gtcatcaccc ggccctaagc
      601 ttttgcgaag ggtccgggtg atccaatttt cttgccgaaa caaattggat cgcccgcatg
      661 aagcgggcga tgacgagttt ttgacgtaaa tcaccccaca ccgaaacttt tctattgaag
      721 attccccgcc accgccttgg gcttatacgg cgcgtcgagg ctggcgatct cttccgccgt
      781 cagtttgatc tccgccgccg ccaccgcatc gtccaaatgg ctcatcttgg acgcaccgat
      841 gataggcgcg gtgatgccct tggccagcag ccaggcggtg gcgatttgcg cattgttctt
      901 gccgcgttgc ttgccgatct gctcgacccg gctgagggtc tcgatatcgg cgtcatcgaa
      961 tgccatgtcc aggacattgt cgcttttggc gcgggtactc tgtttttcca gcgccttggc
     1021 atggctgcgg cccagaaagc cgcgcgccaa cgggctccag gggatcacgc ccaccccggc
     1081 gtcgcggcac aagggcagca tctcgcgctc ttcttcgcgg tagaccaggt tgtagaaatt
     1141 ctgcatcgag acgaacttgg tcatccccat cttttccgcc gtggagagat atttcgcgaa
     1201 ctgccaggca tgcatggagg aggcgccgat atagcgcgcc ttgccgcact tcacgacatc
     1261 gtgcagcgcc tcgatggttt cctcgatggg cgtggcatga tcgaaacggt ggatctggta
     1321 gaggtcgaca tagtcggtgc ccagccggcg caaggaatcg tcgatcgcgt gcagtatgtg
     1381 cttgcgcgac aggccgccat gacggccgtc ggtgggaaag aagaccttgg tcgccagcac
     1441 agtgtcttcg cgcttttccg cgaaatcctt cagcgcccgt cccacaacct cttccgacgc
     1501 gccgttcgaa tacatatcgg cggtgtcgaa gaaattgatc ccgatttcca gggcgcgctg
     1561 gaggaagggc cggctggcgg cctcgtccag cacccagtcg cgccatttgg gatcgccata
     1621 ggtcatggtc cccaggcaga tgcgcgaaac cttaaggccg gtattgccca gacggacttt
     1681 ttccacgcgc atctcccaga aaagcgaaga cgctttctag aagccgaaga gcggcgctgc
     1741 aatcctttgc agcaggcttt cgaacttcag cttcccggtg gtgaccgcca gattgatgca
     1801 gtcctcgccc ggatcggcga ccacattgtg gcgcgtgccg ccgcccatga cctgcagatc
     1861 gccgggacca taattgccgg tcacatcggt gaagccgccc cgcagcacca cggtatattc
     1921 ctggccctca tggctatgcg cgccgctgtc cgccccgggc acgccgcgca gcagccgggc
     1981 gctgacggcg ccgcggcgga acaagggcag atagctgagg cgcgggccca tctgccgcca
     2041 gtgcacgtta ctgaggtcgc cgccgatata gctacgcaag acgccgggcg tg
//
LOCUS       DATMDK010000052         3270 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_27942,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000052 DATMDK010000000
VERSION     DATMDK010000052.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3270)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3270)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3270
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_27942"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(126..1511)
                     /locus_tag="VNN98_00970"
     CDS             complement(126..1511)
                     /locus_tag="VNN98_00970"
                     /inference="COORDINATES: protein motif:HMM:NF013245.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HWM60686.1"
                     /translation="MGALLHLTLLSLKLNFRNRMAILYGYLFPLIFLVAFWAIYRNDP
                     VPLALHLGPLLTVTILGGACFGLPTTIVAERERGMWRRYRLLPARGWVFVASILAARA
                     VLLLTAALLQLALAFAFGMPVPTHPLGLLLAFAATAAAFLGFGMVIAMLVDNVPAVQA
                     LGQCIFLPMLMIGGVAVRLESLPHWAQHASAFFPGRYAVEALQLSATGAGGAGFDLLA
                     LLLIAVAGAVAAAAMFRWDKAFTPRRGWLLLALGMWAVVGVMAEARGRVAISAVQDTR
                     DVGTAKDYVRPPKPAVVSAAPASWRDVTDADIQKIAFDRLPSDEGIVSPVSRGDETPD
                     PAILPQLDKIRDALPSWAPGTVSDPVQRARNLLAIAAVPDILQMEQVERFVPRLVFAR
                     LQAVIPPRELPKILYWIALHPDDGSDAAIHQLGIFGLPDISGPAKPMRGRIMLYAFKL
                     LGRLAGPLPNN"
     gene            complement(1511..2221)
                     /locus_tag="VNN98_00975"
     CDS             complement(1511..2221)
                     /locus_tag="VNN98_00975"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HWM60687.1"
                     /translation="MSVAIGVRNLSRRYGAVQAADDVSFEIAPGEIFGLLGPNGAGKT
                     TVVECLLGLTCAGEGRVEICGIDARAQPGRAREKIGAVLQATGLQDKITPREALDAFA
                     AFYTAPLQTGTLLDRFGLREKQSAAYETLSGGQKQRLALALAFVGDPQVLVLDEPTAG
                     LDPQMRREVQNHIRAMKSAGRAVLLTTHDMAEAEQLCDRIAVIASGRIVAMGSPSELI
                     ADSGGSLEDVILHLTSRG"
     gene            complement(2218..>3270)
                     /locus_tag="VNN98_00980"
     CDS             complement(2218..>3270)
                     /locus_tag="VNN98_00980"
                     /inference="COORDINATES: protein motif:HMM:NF012264.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HWM60688.1"
                     /translation="LDDASADVRNAALRGAEPFLAKGDAAIQAAVLKKSDDSSWQVRR
                     QLAASLGELPREARVAPVVGLLKKYGSDAITVDAGISGLKGLEAEALTQLLAQQGPGT
                     DAVEMLAGAAGKSRDVAQVQKLIALAVDAQQPTPLRLAMLNGAATGLSGTEARTGGTV
                     ADGRAGGFALVPRPRAAVKPMALPAEPVALTALASASGDLSGAAKAVIDDLTWPGKPV
                     PPAPKNTRTPAEEALFKAGAGVYATNCAGCHQDQGQGAPRIAAALAGSKIVTGRPDIP
                     LRVLLNGKDGSIGEMPPLGQSLSDEQLAQVLTYIRGSFGNTATAINAEAAKEFRLLYA
                     FRKKPWTDQELQKQPR"
BASE COUNT          585 a         1133 c         1043 g          509 t
ORIGIN      
        1 cccaactcac ccctcacctg aaaaatcaat gggttgagcg tcgctacgct ccgctaaccc
       61 aatgattttt cttcctctcc ctcaagggga gaggaaagga tgagcagact ttatcgtaag
      121 cgacactaat tgttcggcaa cggcccggcc agccggccca acaatttgaa ggcatagagc
      181 atgatgcggc cacgcatcgg cttggcgggg ccgctgatgt ccggcaggcc gaaaatgccc
      241 aactggtgga tcgccgcatc gctgccatcg tcaggatgca gggcgatcca gtacaaaatc
      301 ttcggcagct cgcgcggcgg gatcaccgcc tgcaggcggg cgaagaccag ccgggggaca
      361 aagcgctcca cctgctccat ctgcaggatg tccggcaccg ctgcgatcgc cagcagattg
      421 cgcgcccgct gcaccggatc ggaaactgta ccgggcgccc agctgggtag cgcatcacgg
      481 atcttgtcga gctggggaag gatggcggga tcgggagtct cgtcgccgcg cgacaccggc
      541 gaaacgatac cttcatccga tggcaagcga tcgaaggcga tcttctggat gtcggcgtcg
      601 gtgacgtcgc gccaggatgc cggcgctgcg gacaccaccg caggtttcgg cggccggaca
      661 taatccttgg cggttccgac atcgcgtgtg tcttgcacgg cgctgatggc gacgcggccg
      721 cgcgcttccg ccatcacgcc caccaccgcc cacataccca gtgccagcaa cagccaaccg
      781 cgccggggcg tgaaggcctt gtcccagcgg aacatcgcgg cggcggccac ggcgcccgcc
      841 acggctatca gcagcaacgc cagaagatcg aagccggcgc ctccggcgcc ggtggccgaa
      901 agctgcaagg cttccactgc atagcggccg gggaaaaagg cggaagcgtg ctgcgcccag
      961 tgcggcaggc tttccagccg caccgccacg ccgccgatca tcagcatggg caggaagatg
     1021 cactggccca gcgcctgcac cgccggcaca ttgtccacca gcatcgcgat caccatgccg
     1081 aaacccagga aagcggcggc cgtggcggcg aaggcaagca gcagacccaa agggtgcgtc
     1141 ggaaccggca tgccgaaggc gaacgccagc gccagttgca gcagggccgc cgtcagcagc
     1201 agcaccgcgc gcgccgccaa tatgctggcc acgaataccc agccgcgcgc cgggagcagg
     1261 cgatagcgcc gccacatccc gcgctcgcgc tcagcgacga tggtggtggg caggccaaaa
     1321 caggcgccgc ccaatatggt cacggtgagg agcggtccca gatgcagcgc cagcggcacg
     1381 ggatcgttgc ggtagatcgc ccagaaggca accaggaaga tcagcggaaa cagatagcca
     1441 tacaggatcg ccatccggtt gcgaaaattc agcttcaggc tgagaagcgt gaggtgcagc
     1501 aacgcgccca tcagccgcgg ctcgtcaggt gcaggatcac gtcttccagg ctgcccccgg
     1561 aatcggcgat cagttcgctt ggactgccca tggccacaat ccgccccgac gcgatcaccg
     1621 cgatgcggtc gcaaagctgc tccgcctccg ccatgtcatg ggtggtgagc agtacggcgc
     1681 ggccggcgct tttcatcgcg cggatatggt tctgcacctc gcggcgcatc tgcgggtcca
     1741 atccggcggt gggctcgtcc agcaccagaa cctgtggatc gcccacaaag gccagcgcca
     1801 gcgccagccg ctgcttctgc ccgccggaca aggtttcgta ggcggcgctt tgcttttcgc
     1861 gcaaaccgaa ccggtccagc aaggtgccgg tttgtaacgg cgcggtgtag aaagcggcaa
     1921 aggcgtccag cgcctcgcgc ggggtgatct tgtcctgcag gccggtggcc tgcagcaccg
     1981 cgccgatttt ttcccgcgcc cggcccggct gggcgcgggc gtcgatgccg cagatttcga
     2041 cccggccttc gccggcgcac gtcaagccca acaggcattc caccaccgtg gtcttgcccg
     2101 cgccgttggg gcccagcagg ccgaatatct cgcctggcgc gatctcgaag ctgacgtcat
     2161 cggccgcctg caccgcgcca tagcggcgcg acaggttccg gacgccaatc gcaacactca
     2221 ccgcggctgt ttctgcagtt cctggtcggt ccagggcttt ttgcggaagg cgtaaagcag
     2281 gcggaattcc ttggccgcct ccgcattgat cgccgtcgca gtgttgccga agctgccgcg
     2341 gatataggtc agcacctgcg ccaattgctc gtcactcaag gattggccca gcggcggcat
     2401 ttcgccgatg gagccgtcct tgccgttgag cagcacgcgc agcggtatgt cggggcggcc
     2461 ggtgacgatc ttggagcccg ccagcgcggc ggcgatgcgc ggcgcgccct ggccctggtc
     2521 ctggtgacaa ccggcgcaat tggtggcgta aacccctgcg cccgccttga acaaggcttc
     2581 ctcagctggc gtacgcgtat tcttgggcgc gggcggcacc ggcttgcccg gccaagtcag
     2641 gtcatcgata acggctttgg ccgcgccgga cagatcgcca ctggcgctgg ccagagcggt
     2701 cagggcgacc ggctcggcgg gtagcgccat aggcttcacc gccgcacgcg gccgcggcac
     2761 aagcgcaaag ccgccggccc gcccgtcagc cacggtgccg ccagtgcgcg cttccgtgcc
     2821 cgacagcccc gtcgcggcgc cattcaacat cgccagacgc aagggcgtcg gctgctgggc
     2881 gtccaccgcc agggcgatga gcttttgcac ctgcgcgaca tcgcggcttt tgcctgccgc
     2941 gcctgccagc atttctaccg cgtcggtgcc cggaccctgc tgagccagca actgggtcaa
     3001 tgcttcggct tccagccctt tgagaccgct gatcccggca tccaccgtga tcgcatcact
     3061 gccgtatttc ttcagcagcc ccaccaccgg ggcgacgcgc gcctcgcgcg gcaactcacc
     3121 cagcgaggcc gccagctggc ggcgcacctg ccagctggaa tcgtctgatt tcttcagcac
     3181 cgccgcttgt atcgcggcat cgcccttggc caaaaacggc tccgcgccgc gcaaagccgc
     3241 gttacgcaca tcggcgctgg catcatccaa
//
LOCUS       DATMDK010000053         2830 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_939210,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000053 DATMDK010000000
VERSION     DATMDK010000053.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2830)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2830)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2830
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_939210"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1262
                     /locus_tag="VNN98_00985"
     CDS             <1..1262
                     /locus_tag="VNN98_00985"
                     /inference="COORDINATES: protein motif:HMM:NF013237.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="O-acetylhomoserine
                     aminocarboxypropyltransferase/cysteine synthase family
                     protein"
                     /protein_id="HWM60689.1"
                     /translation="AVAVPIYQTVAYQFDSADHGAALFNLEEDGYRYSRIANPTVAVL
                     EERVAALEGAAGALATASGQAALYYAFANVATTHHGSGAGPNIVSTPQLYGTTHTLLH
                     NLLPSQGVEGRFAQGDSAEVLEACIDENTRAVFCETVGNPAGNICDIEAIARMAHAHG
                     VPLIVDNTVATPVLLKPAAYGADIIVHSLTKFMGGHGSAMGGMLVDVGRFDWMANAAR
                     FPQFTTPDASYHGLVYAQRFPKTAFVARARSVYQRTTGAILSPMSAFLLLQGIETVAL
                     RVERHVENARAVADFLRTDSRVAWVNYAGFPESPHYALANKYLGGRPASLLTFGVAGG
                     FEAGKNFYDALGLIKRLVNIGDAKSLACHPASTTHRQMPESQQRKAGVTPETIRLSVG
                     IEHRDDIIADLDQALAAAMRGQLKVAR"
     gene            1259..2254
                     /locus_tag="VNN98_00990"
     CDS             1259..2254
                     /locus_tag="VNN98_00990"
                     /EC_number="2.3.1.46"
                     /inference="COORDINATES: protein motif:HMM:NF016120.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine O-succinyltransferase"
                     /protein_id="HWM60690.1"
                     /translation="MSRVEQFLLGGGHFLSGGSGRASLHIGLVNNMPDAALRATELQF
                     ARLLKAAAGSLDVRLRLFSLHSIARGEQACSRMAGFYDDAAFLQASNIDALIITGAQP
                     CAADLRNEPYWAELAHLIDWAEIGTISTLFSCLAAHAAVLHLDGIARRPLAAKLSGVY
                     DSVRTEDDPLFFNTAPSVPVPHSRRNDIAQADLTAKGYRVLSRLSNGQADIFTREPPG
                     HSRFVFFQGHPEYDPGTLGREYLRDMGRFLCGETAERPALPENYFDRATEDRLAEIAG
                     ESDLARYQEIVVGALPRQVWRSNTVRLFGNWLTLVAAAKARREVSRSVHTRRRAS"
BASE COUNT          484 a          930 c          889 g          527 t
ORIGIN      
        1 acgcggtggc ggtgccgatc tatcagacgg tggcgtatca gttcgattcc gccgatcacg
       61 gcgcagcctt gttcaatctg gaagaggacg gctatcgcta cagccgcatc gccaacccta
      121 cggtggcggt gctggaagaa cgagtcgcgg cgttggaagg cgcggcgggg gcgctggcca
      181 ccgccagcgg gcaggcggcg ctctactatg ctttcgccaa tgtggcgaca actcatcatg
      241 gaagtggggc gggcccgaac atcgtctcca cgcctcagct ttacggcacc acccataccc
      301 tgctgcacaa tctgttgccc agccagggcg tggaaggccg cttcgcccag ggcgacagcg
      361 ccgaagtttt ggaagcttgc atcgacgaaa acacccgcgc cgtgttctgc gagacggtgg
      421 gcaatcctgc cggcaatatc tgcgatatcg aagccatcgc ccgcatggcg catgcccatg
      481 gcgtgccctt gatcgtggac aataccgtgg cgacgccggt gctgctgaag cctgccgcgt
      541 atggcgccga catcatcgtg cattcgctga ccaaattcat gggcggtcat ggcagcgcca
      601 tgggcggcat gctggtggat gtgggccgct tcgactggat ggccaacgcg gcgcgctttc
      661 cgcaattcac cacccccgat gcttcttatc atggcctggt ctatgcccaa cgctttccca
      721 agaccgcctt tgtggcgcgg gcgcgcagcg tctatcagcg caccaccggc gccatcctgt
      781 cgccaatgag cgccttcctg ctgctgcagg ggatcgagac cgtggcgctg cgggtcgaac
      841 gccatgtcga gaatgcccgc gcggtggccg atttcctgcg caccgactcc cgcgtcgcct
      901 gggtgaatta tgccggtttc ccggaaagcc cgcattatgc gctggccaac aaatatctgg
      961 gcggccgtcc cgcctcgttg ttgacctttg gcgtggcggg cggcttcgag gccggcaaga
     1021 atttctacga cgcgctgggc ctgatcaagc ggctggtcaa tatcggcgac gccaagtcgc
     1081 tggcctgcca ccccgcctcc accacccatc gccagatgcc ggaaagccag cagcgcaagg
     1141 cgggcgtgac gccggaaacc atccgcctgt cggtggggat cgagcatcgc gacgacatca
     1201 ttgccgacct ggatcaggcg cttgccgccg ccatgcgcgg ccaattgaaa gtcgcacgat
     1261 gagccgggtc gaacaatttc tgctgggcgg cggtcacttt ttaagtggcg gaagtgggcg
     1321 cgcctccctc catatcggcc tggtcaacaa catgcccgat gcggcattgc gcgccaccga
     1381 attgcaattc gcccggctgc tgaaggcggc ggcggggtca ctggatgtgc ggctgcggct
     1441 gttctccctg cattccatcg cgcggggcga acaggcctgc tcgcgcatgg ccggcttcta
     1501 tgacgatgcc gcgttcctgc aggcctccaa catagacgcg ctgatcatca ccggcgctca
     1561 gccctgcgcg gccgatctgc gcaacgaacc ctattgggcg gaactggcgc atctgattga
     1621 ctgggccgag atcggcacca tctccacttt attctcctgc ctggcggctc acgccgcggt
     1681 gctgcacctg gacggcattg cgcgccggcc gctggcggcg aaactgtcgg gcgtctatga
     1741 cagcgtccgg accgaggacg atccgctgtt cttcaacacc gcgccgtccg tgccggtgcc
     1801 gcattcccgc cgcaacgaca tcgcgcaagc cgatctcacg gccaagggct atcgcgtgct
     1861 gtcgcggctc tctaacggcc aggccgacat ctttacccgc gaaccgccgg gccatagccg
     1921 ctttgtcttc ttccagggcc atcccgaata tgatcccggc actttgggcc gcgaatatct
     1981 gcgcgacatg ggccgtttcc tctgcggcga gacggcggag cgtcccgctt tgccggagaa
     2041 ttatttcgat cgcgccaccg aggaccggct ggccgagatc gccggcgaat ccgatttggc
     2101 ccgctatcag gagatcgtgg tgggcgcctt gccgcgccag gtctggcgct ccaacacggt
     2161 gcggctgttc ggcaattggt tgaccctggt agccgccgcc aaggcccgcc gcgaggtctc
     2221 gcgcagcgtg cacacccgcc gccgcgcgtc ttagcattgt cttccctctc cccttgaggg
     2281 ggaggacgca aaatcttgca cttggcgaag cgcaagcgaa gccaagtgct tagattttgc
     2341 taggtgaggg ggtaaggagt ggtttgcgaa gcaaacgaaa tggtccagtg gaccatttcg
     2401 agcgacgaac gccgcgagcc aaagcgagcg gccggatgtt tccatctaga cccggcccgt
     2461 cgcagtgctc cgggcgttcg acgctcaaat cgatccactg gatcgatttg cccggcttcg
     2521 ccggtcgcgt ctctcacttg aaaaatcaat gggttgagcg tcgctaccgc gccgctaacc
     2581 caatgatttt tcttcctcca ctgggcgcgc ctggccgcgc gcccgtcctt cggacccctc
     2641 aaggggagag ggaacaaggg cgcgcctagc ccttcggcac gacatcaaaa gcaatcgtcg
     2701 tccgcgcctg cgcgtcgtgg aacggtatcg tgccgtgcca catataggag ggaaacagca
     2761 ccagccgtcc cgggcggggc tgaatggcgc ggcggatggg atccttcagc gccacgccga
     2821 aggtcggctc
//
LOCUS       DATMDK010000054         4562 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1627763,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000054 DATMDK010000000
VERSION     DATMDK010000054.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 4562)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4562)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4562
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1627763"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..791)
                     /gene="mnmA"
                     /locus_tag="VNN98_00995"
     CDS             complement(<1..791)
                     /gene="mnmA"
                     /locus_tag="VNN98_00995"
                     /EC_number="2.8.1.13"
                     /inference="COORDINATES: protein motif:HMM:TIGR00420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_function: GO:0016783 - sulfurtransferase activity
                     [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-thiouridine(34) synthase MnmA"
                     /protein_id="HWM60691.1"
                     /translation="MTAPVLKPGSRIVAAMSGGVDSSVTAALLKRQGYDVVGITLQLY
                     PSGKAPARKGACCAGADIYDAKRVAADLGIAHYVLDYESRFRKNVIEDFAESYARGET
                     PIPCVRCNERVKFADLLDTARELGAEAMATGHYVRRVEGASGAELHAAADVTRDQSYF
                     LFATTQAQLDYLRFPLGDMEKREVRAIAAELGLVTAAKPDSQDICFVPEGRYTTIVDG
                     IRPNAARPGEIVDMTGAVLGRHDGITHFTVGQRKGLNLSGNAEPL"
     gene            complement(843..1802)
                     /locus_tag="VNN98_01000"
     CDS             complement(843..1802)
                     /locus_tag="VNN98_01000"
                     /inference="COORDINATES: protein motif:HMM:NF012903.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0071973 - bacterial-type
                     flagellum-dependent cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin"
                     /protein_id="HWM60692.1"
                     /translation="MSVDRVATSAQTAFFLAQIQNAGSALDKTQEQIASTKNATTYAG
                     FGDKTQVLTATIAANARNTAYTNATKFAVTQTDLQDTQLTSLSSLAAALKKAVSDAVA
                     NSDGSTLMSQAQSIFDQASAILNSKDANGDYIYSGGKTDVAPVTVGSLAALQALPSVT
                     GAFANGNLTKSVQVGDGVSVSYGIAASDVGTGLMQALQDIANFDAGPTGNFSASTNLT
                     GPQSTFLTNAISQATTVDTNLNAATAANGYVSNRLTDAQTQQTSMDTLYKGFVSDIQD
                     TDMAKAATQLSLNQTQLQAALQVTAGLHQLSLLNYLPAPTAGG"
     gene            complement(1815..3950)
                     /gene="flgK"
                     /locus_tag="VNN98_01005"
     CDS             complement(1815..3950)
                     /gene="flgK"
                     /locus_tag="VNN98_01005"
                     /inference="COORDINATES: protein motif:HMM:TIGR02492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009424 - bacterial-type flagellum hook
                     [Evidence IEA];
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0001539 - cilium or flagellum-dependent
                     cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-associated protein FlgK"
                     /protein_id="HWM60693.1"
                     /translation="MSLNGIAASAISALKTNSAALSVVANNVSNLNTAGYARRIVNQQ
                     TLSAGGQLMGVDIATIQRVTNQFLSQEQLSAGGAASQYDTMAGLFSQLNGLLGGPGDN
                     QSLATGLTNLASAFATASQAPTSSASRTGVLNALGSLANSFSSVSSTISALQSQIDQQ
                     AVNSISTTNTLIKQIYDLNTQIKTANAGGDQASGLLDQRDVALNNLAQVMGIKTSTNA
                     DGSVNVSTSDGVNLVSNTYAKLAYSGGAQNGAYSNITIQDINPANGQMIGTASALDPH
                     LSGGSLKGLIDMRDQTLGGLSQTLGNLAQQTALAFNGQANANAAYPPPTSLTGRDTGM
                     LGTDALNFSGKTTLAVTDSSGKLVSRIDVDFGAGTLSVNGGAAAPIGTTIASFTTALN
                     TALGGGSASFANGQLSISAPGGNGVLVQDDATTPSLRGTTGFSQFFGLNDVFQSQVPS
                     VTATGLAAGDSSGLPAGGVIALSLKGPDGDIVKNVSITTTAGQTVGNVVSALNTAMGG
                     AATFTLNSDGSISTATSALYPGYSLNVTGDTTQRGTTGMSFSQIFGLGANAQANQAIG
                     FNLTTAVSTNPGRVGFASPALTAASVAGDTIVSAGDNAGAIALQNLITKTQNFNAAGG
                     IAAQAASLSDYAATFYQNISTQSNTVTANQTTQDDRLTEANSRVASNSGVNLDEELTS
                     LSSYQQAYSAGARLLTVVDSLYQTLLQIQ"
     gene            complement(3947..4222)
                     /locus_tag="VNN98_01010"
     CDS             complement(3947..4222)
                     /locus_tag="VNN98_01010"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM60694.1"
                     /translation="MMIRKNIFARITRRKGRARCITAILLNFLDGAPAATAQKDGQDL
                     PVRQTLPPGTLRLNSVKTQQNRANVSHFGWHGPCDSLCGTMYSDRSQ"
     gene            4236..>4562
                     /locus_tag="VNN98_01015"
     CDS             4236..>4562
                     /locus_tag="VNN98_01015"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM60695.1"
                     /translation="MRASATSKTASPANVYASQAKGNANKADAASPFALLLESTAPSQ
                     AAKPAKKDTQESADKKDGKSVVSQAANQDNKADAAPATVQSKSTPTDKPADKPEKSDK
                     SGKGENQ"
BASE COUNT          792 a         1321 c         1586 g          863 t
ORIGIN      
        1 aacagcggct cggcattgcc ggagagattg aggcccttgc gctgacccac ggtgaaatgg
       61 gtgatgccat catgccggcc cagaaccgcg ccggtcatgt ccacgatctc gcccgggcgc
      121 gccgcattgg ggcggatgcc atccacgatt gtcgtgtagc gaccttcggg cacaaagcag
      181 atgtcctggc tgtcgggctt ggcggccgtg accagcccca attcggcggc gatggcgcgc
      241 acctcgcgct tttccatgtc gcctaaggga aagcgcagat agtcgagctg cgcctgggtc
      301 gtggcaaaaa ggaaatagct ctggtcgcga gtgacgtccg ctgcggcgtg aagctccgcg
      361 ccgcttgcgc cttccacccg gcggacataa tggccggtgg ccatcgcctc ggcgcccagt
      421 tcgcgcgcgg tgtccagcag gtcggcgaac ttcacccgct cattgcagcg cacgcaaggg
      481 atcggggttt cgccgcgggc gtaactctcg gcgaaatcct cgatgacatt tttgcggaag
      541 cggctttcgt aatccagcac ataatgggca atgcccagat cggcggccac ccgcttggcg
      601 tcatagatgt cggccccggc acagcaggcg cccttgcgcg ccggcgcctt gccggacgga
      661 taaagctgca aggtgatgcc caccacgtcg tagccctggc gcttgagcag tgccgcagtg
      721 acggaggaat ccacgccgcc gctcatcgcg gcgacgatcc tgcttccggg cttgaggaca
      781 ggggcggtca taggccggtg ctataggacc ggctcgcgaa aatcgcaaca aaaagcgatg
      841 ttttagccgc ccgcggtcgg cgccggcagg taattcagca gcgaaagctg gtgcagcccg
      901 gcggtgacct gcagcgccgc ctgcagctgg gtctggttca gcgacagctg ggtggcggcc
      961 ttggccatgt cggtatcctg gatgtcggac acgaagccct tgtagagcgt gtccatggag
     1021 gtctgctggg tctgggcgtc ggtcaggcgg ttggagacat agccattggc ggccgtagca
     1081 gcgttcaggt tggtgtccac cgtcgtggcc tgggaaatcg cgttggtgag gaaggtgctc
     1141 tgggggccgg tcaggttggt ggaagcgctg aagttgccgg tggggccggc gtcgaaattg
     1201 gcgatgtcct gcagcgcctg catcaagccg gtgccgacat cagaggcggc gatgccataa
     1261 ctgaccgaga cgccgtcacc cacctgcacg gatttggtga gattgccgtt ggcgaaggcg
     1321 cctgtcaccg acggcagcgc ctgcagcgcc gccagcgaac ctactgtcac cggcgcgaca
     1381 tcggtcttgc cgccgctgta gatgtaatcg ccattggcgt ccttggaatt caggatggcg
     1441 ctggcctggt cgaagatgct ctgggcctgc gacatcaggg tggaaccgtc actgttggcg
     1501 accgcgtcgc tgaccgcctt cttcagggcg gcggctaggc tggacaggct ggtcagctgg
     1561 gtgtcctgca gatcggtctg ggtaacggcg aatttggtag cattggtata ggcggtgttg
     1621 cgcgcattgg cggcgatggt cgcggtcagg acctgggtct tgtcgccgaa gccggcatag
     1681 gtggtggcgt tcttggtcga ggcgatctgt tcctgggtct tgtccagggc gctgccggca
     1741 ttctggatct gggcgaggaa aaacgcggtc tgggcggagg tagcgacgcg atcgacactc
     1801 atgagctttt gtccttactg aatctgcagc agggtctggt acagcgagtc caccaccgtc
     1861 aagaggcgcg cacccgcgga ataggcctgc tggtaggaag acagcgacgt cagttcctca
     1921 tccaggttga cgccggaatt ggaagcgacg cgcgaattgg cctcggtcag ccggtcgtcc
     1981 tgggtggtct ggttggcggt gaccgtgttc gattgggtgg aaatattctg atagaaggtc
     2041 gccgcataat ccgacagtga cgcggcctgg gcggcgatgc cgccggcggc gttgaaattc
     2101 tgagtcttgg tgatgaggtt ctgcagcgca atggcgccgg cattgtcgcc cgccgagacg
     2161 atggtgtcgc cggccacgct ggcggcggtg agggccggac tggcaaagcc cacgcggccg
     2221 ggattggtgc tgacggcggt ggtcaggttg aagccgatgg cttggttcgc ctgcgcattg
     2281 gcgcccagtc cgaagatctg gctgaagctc atgccggtgg tgccgcgctg ggtggtgtcg
     2341 ccggtcacgt tcagggaata gccgggatac agcgccgagg tggcggtgga gatcgagccg
     2401 tcgctgttca aagtgaaggt cgcggccccg cccatcgcgg tgttcagcgc cgacaccaca
     2461 ttgccgacgg tctggcccgc ggtggtggtg atgctgacat tcttgacgat gtcgccgtcc
     2521 gggcctttca gcgacaaagc gatcacgccg cccgccggca agccgctgga atcgcccgcc
     2581 gccaggccgg tggcggtgac cgaaggcacc tgcgactgga aaacatcatt caggccgaag
     2641 aattgcgaaa agcccgtggt gccgcgcaac gagggcgtgg tggcgtcgtc ctgcaccaga
     2701 acgccattgc cgccgggggc ggaaatcgaa agctggccgt tcgcgaaact ggcgctgccg
     2761 ccgcccagcg cggtgttcag cgccgtggtg aagctggcga tggtggtgcc gatgggggcg
     2821 gccgcgccgc catttaccga aagagtgccg gcgccaaaat ccacatcgat gcgcgatacc
     2881 agcttgccgc tggaatcggt gacggccagg gtggtcttgc cggagaagtt caaggcatcg
     2941 gtgcccagca tcccggtatc gcggccggtc aatgaggtcg gcggcggata ggcggcattg
     3001 gcattggcct ggccattgaa cgccagcgca gtctgttgcg ccagattgcc cagggtctgc
     3061 gacaggccgc ccagtgtctg atcgcgcatg tcgatcaggc ctttgagcga gccgcccgac
     3121 agatgcgggt ccaacgccga agccgtgccg atcatctggc cgttggcggg gttgatgtcc
     3181 tggatggtga tattgctata ggcgccgttc tgggcgccgc cggaataggc cagcttggcg
     3241 taggtgttgg acaccagatt gacgccgtcg gaggtggaaa cattgacgct gccatcggca
     3301 ttggtgctgg tcttgatccc catcacctga gcgagattgt tcagcgccac gtcgcgctga
     3361 tcgagcagcc ccgacgcctg gtcgccgccg gcattggcgg tcttgatctg ggtgttcaaa
     3421 tcgtaaatct gcttgatcag cgtgttggtc gtgctgatcg agttgaccgc ctgctggtcg
     3481 atctggctct gcagcgccga gatggtgctg gaaacgctgg agaagctgtt ggccaggctg
     3541 cccagggcat tgagcacgcc ggtgcggctg gcgctggaag tcggcgcctg cgaggcggtg
     3601 gcgaaggcgg atgccaggtt ggtcaggccg gtagcaagcg actggttgtc gccgggaccg
     3661 ccgagcaggc cgttcagctg ggagaacagc ccggccatgg tgtcatactg tgacgcggcg
     3721 ccgcctgccg acagctgttc ctgggaaaga aactggttgg tgacgcgttg gatggtggcg
     3781 atgtccacgc ccatcaactg gccgccggca ctcagcgtct gttgattgac gatacggcgc
     3841 gcatagcccg cggtgttgag attggagacg ttgttcgcca ccacgctgag cgcggcgctg
     3901 ttggtcttga gcgcgctgat ggcactggcg gcgattccgt tcaggctcac tggctgcgat
     3961 ccgaatacat tgttccgcac agactgtcgc aaggcccatg ccatccgaaa tggctgacat
     4021 ttgcccggtt ttgctgggtt ttcacactgt tcaggcggag ggtgccgggc ggcagagttt
     4081 gccgcaccgg caggtcctgc ccgtcttttt gtgctgtcgc cgcgggcgcg ccgtccaaaa
     4141 aattcagcaa aatcgcggtg atgcatctgg cccgcccctt gcgtctggtt atccgagcaa
     4201 aaatgttttt gcggatcatc atcggattgc cttgagtgcg agcgtcagcg acatccaaga
     4261 cggcctctcc tgcgaacgtt tatgcctcgc aggccaaggg caatgccaat aaggcggacg
     4321 cggcgtcgcc tttcgcgctg ctgctcgaat ccaccgcgcc cagtcaggcc gccaaaccgg
     4381 ccaagaagga cacgcaggag tccgctgaca agaaagacgg caagagcgtc gtcagccagg
     4441 ccgccaatca ggacaacaag gccgatgccg ccccggcgac ggtgcagtcc aagtctaccc
     4501 cgacagataa gccggcggat aagccggaaa aatcggataa gagcggcaag ggtgaaaacc
     4561 ag
//
LOCUS       DATMDK010000055         5617 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_28319,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000055 DATMDK010000000
VERSION     DATMDK010000055.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 5617)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5617)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5617
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_28319"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(174..563)
                     /locus_tag="VNN98_01020"
     CDS             complement(174..563)
                     /locus_tag="VNN98_01020"
                     /inference="COORDINATES: protein motif:HMM:NF013098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HWM60696.1"
                     /translation="MVHRIGEIALLIRDYDEALAWFTEKLDFVVVADSKLPAGERWVT
                     VAPLGGQTAVRLSRAETSAQVVQIGHQADERVLLYLHTDDFARDHVLYAARGIRFLEA
                     PRREAYGTVAVFEDLYGNRWDLMQTDG"
     gene            complement(563..1027)
                     /locus_tag="VNN98_01025"
     CDS             complement(563..1027)
                     /locus_tag="VNN98_01025"
                     /inference="COORDINATES: protein motif:HMM:NF019928.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC family protein"
                     /protein_id="HWM60697.1"
                     /translation="MSVVHASFTITRQWKASPSRVFQAFADQEKKDAWFGGGSDWTPV
                     GRSFDFREGGKEHAAGRWKTGMVSRFDCIYLDIVEPAASSEGRIIYNYVMHLDDRKIS
                     VSQASVELFADGGGTKFVLTEYGDYLDGYDDAGSREHGTNFLMDALGKSLES"
     gene            complement(1029..1583)
                     /locus_tag="VNN98_01030"
     CDS             complement(1029..1583)
                     /locus_tag="VNN98_01030"
                     /inference="COORDINATES: protein motif:HMM:NF013989.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008703 -
                     5-amino-6-(5-phosphoribosylamino)uracil reductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrofolate reductase family protein"
                     /protein_id="HWM60698.1"
                     /translation="MRKLISLMHVSLDGFCGGPKGEMDWISLNDAIFADATDVIDTAG
                     AAVYSRVTHDMMRGYWPSLLGKPDSREVRHARWVEQIPKLTFSRTMQGSDWNNVQIRR
                     EAREILADKQQPGKDLLIFGSPGLVHAFLELDAIDEFWMFQNPILLGAGLPYFQGAVK
                     TRLKLASQKPFDNGVIRLHYLKGE"
     gene            complement(1580..1915)
                     /locus_tag="VNN98_01035"
     CDS             complement(1580..1915)
                     /locus_tag="VNN98_01035"
                     /inference="COORDINATES: protein motif:HMM:NF033788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metalloregulator ArsR/SmtB family transcription
                     factor"
                     /protein_id="HWM60699.1"
                     /translation="MLNYQLDKTFAALADPARRAIVERLVAGPATVSELARPLPMSLP
                     AAMLHLKVLADSGLVTSEKVGRVRTCRIEPKMLSQAEHWVTERRVMWERNLDRLAAFL
                     DETKPEDEP"
     gene            2032..2856
                     /gene="panB"
                     /locus_tag="VNN98_01040"
     CDS             2032..2856
                     /gene="panB"
                     /locus_tag="VNN98_01040"
                     /EC_number="2.1.2.11"
                     /inference="COORDINATES: protein motif:HMM:TIGR00222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003864 - 3-methyl-2-oxobutanoate
                     hydroxymethyltransferase activity [Evidence IEA];
                     GO_process: GO:0015940 - pantothenate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-methyl-2-oxobutanoate
                     hydroxymethyltransferase"
                     /protein_id="HWM60700.1"
                     /translation="MSVQTQLKRITVPEIRAHKGAAPIVCLTCYHAHTARLLDNHVDL
                     MLVGDSLGMVMHGLETTLGVTLDMMITHAKAVMRGSQRALVTVDMPFGSYEESPAVAF
                     RNAARVLQETGATAVKLEGGTRMAQTIQYLTQRGIPVMGHIGLTPQMVHVKGGFHTTG
                     RTQAEWPALLADAHAVSDAGAFAVVLEGMAEPLAAKITQEIAIPTIGIGASPACDGQV
                     LVMEDMLGLNPSPPKFVRQYAQLGPAIEAAVEAYAQDVRERRFPGVENVYPMKKAQ"
     gene            3064..3807
                     /locus_tag="VNN98_01045"
     CDS             3064..3807
                     /locus_tag="VNN98_01045"
                     /inference="COORDINATES: protein motif:HMM:NF021492.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HWM60701.1"
                     /translation="MSDIFREVEEDVRRERFEKLWKAYGSYAIAALVLLFAGIGGWQW
                     WQRHDQQEREKVSDAFVATQRISNPQAAASTFADLAHTAPKGYATVARLSEAGAMLAS
                     GQRGPAIDLYKQIAKDDSGTIGAVARLRAAWALAESASRGDLTDLLKPLDQPGNAWRE
                     NAQEILAYADYRAMDTKSALAKYSLLALDPEAPDALRARAKTMAAFLKNGGAISYGSV
                     PADAPAPPPQAAASLANGAPAAATPPPAK"
     gene            3809..5209
                     /locus_tag="VNN98_01050"
     CDS             3809..5209
                     /locus_tag="VNN98_01050"
                     /inference="COORDINATES: protein motif:HMM:NF024753.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-binding-like beta-propeller repeat protein"
                     /protein_id="HWM60702.1"
                     /translation="MKSRSGRFVLVLAAASLLLGGCSVFSEVGSWFASSGKKSNLRGV
                     RIPVMSLDSDLKVDATLAGTPVQLPPPYRNPEWPQPGGYASNAMYHLAVPGRLRQIWS
                     QDAGKGNDVDSHLTSAPVVGGGLIYALDAEAHIYVFRAGDGHPVWNRRLAPKNGTDMP
                     TLWGLLGKANTVDPPQGMGGGVAYDDGKIFVTSGFGVLRCMDARTGRDIWQKDLGMPI
                     VNAPVVSGGRIFISTHDNHFYALAESDGRQLWENQGITESAGILASTSAAVSGETVIA
                     PYTSGEIFALRVQNGQVGWTDVLSRSGHVTMLSTLDTIAGRPVIDRGVVYAISQSGLM
                     AAFSVNTGERLWSRDIGGIQTPWAAGDYVYVLDNNARIICLTRKEGRLRWIHQLPQYE
                     NPDDKSDPIIWAGPVLVSDKLIVTSSNGYAEAVSPYDGKLTGRVEIPSGTIIAPIVAD
                     GTMYLYTSDAELVALR"
     gene            5252..>5617
                     /locus_tag="VNN98_01055"
     CDS             5252..>5617
                     /locus_tag="VNN98_01055"
                     /inference="COORDINATES: protein motif:HMM:TIGR00231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase"
                     /protein_id="HWM60703.1"
                     /translation="MPLKLAIVGRPNVGKSRLFNRLAGRTAAIVHDTPGVTRDRQAVD
                     AEYEGLALRLIDTAGFEDAATGSIANRMTRQTLTAIAEAEALLFLIDARAGVTAGDQI
                     IAQALRKSGKPVILAANKCE"
BASE COUNT         1064 a         1826 c         1713 g         1014 t
ORIGIN      
        1 tttcaccgga ttccctatta atccctctcg ggaactatcg aggcgatgaa agcccggctg
       61 ggggcggctg tcaagaaata cataaagaca ttgttatgtc tgcataagat ttttggtaaa
      121 atcaccccag attaagcggt aaattcccgg cgggtcaggt ttctggccat tgcctagccg
      181 tcagtttgca tcaggtccca gcggttgcca tacaaatcct cgaacaccgc cacagttcca
      241 taagcttcgc ggcgcggcgc ctccaggaac ctgattcctc gcgcggcata caaaacatga
      301 tcgcgcgcaa aatcatcggt gtggagatac agcagtacgc gttcgtccgc ctgatgcccg
      361 atttgcacca cctgcgcgga ggtttcggcc cgcgacagcc gcacggcagt ctgccctccc
      421 aatggcgcaa cggtcaccca gcgctcgccc gcaggcaatt tgctgtccgc gaccacgaca
      481 aaatccagct tttccgtaaa ccaggcgagc gcctcgtcgt aatcgcgtat caaaagtgcg
      541 atttcgccaa tccggtgcac catcagctct ccaatgactt tcccaatgca tccatcagga
      601 aattggtgcc atgctcgcgg ctgccggcat cgtcatagcc gtcgagatag tcgccatatt
      661 cggtgagcac gaacttggtg ccgccaccgt cagcgaacag ttcgacactg gcctgggaaa
      721 cggagatctt cctgtcgtcc agatgcatca cataattgta gatgatgcgt ccttcgctgc
      781 tcgccgccgg ttcgacaatg tcgagataga tacagtcgaa cctggaaacc attccggttt
      841 tccagcgccc ggccgcatgt tccttgcccc cttcgcggaa atcgaagctg cggcccaccg
      901 gcgtccaatc cgagccgccg ccgaaccagg cgtccttttt ttcctgatcg gcgaaagcct
      961 ggaacacacg cgatggcgag gctttccact ggcgggtaat ggtgaaactg gcatgaacga
     1021 cggacatctt attctccctt gaggtaatgc aggcggatga cgccgttgtc gaacggcttt
     1081 tggctggcga gtttcaatct ggttttgacc gcgccctgga aatagggaag cccggcgccc
     1141 agcaatatgg ggttctggaa catccagaac tcgtcgatcg catccagttc cagaaaggca
     1201 tgcaccaggc cggggctgcc gaagatcagc aggtctttgc ccggttgctg cttgtccgcc
     1261 aaaatctcgc gcgcctcgcg gcggatctgc acattgttcc agtcgctgcc ttgcatggtg
     1321 cgcgaaaagg tcagtttggg aatctgctcc acccagcggg cgtgacggac ttcgcgcgaa
     1381 tccggcttgc ccagcagact tggccaatag ccgcgcatca tgtcgtgggt cacccggcta
     1441 tagaccgcag cgccggcggt atcgatcacg tcggtggcgt cggcgaagat ggcatcgttc
     1501 aggctgatcc agtccatctc gcccttgggc ccgccgcaga aaccgtccag cgacacgtgc
     1561 atcagggaaa tcagctttct catggctcgt cctccggttt ggtttcgtcc agaaaggcgg
     1621 ccagacgatc gagattgcgc tcccacatca cccggcgctc ggtgacccag tgttcggcct
     1681 ggctcaacat tttcggctcg attcggcagg tgcgcacccg ccccactttc tcgctggtca
     1741 ccagaccgga gtccgccaga accttcaggt gcagcatagc cgccggcagc gacatgggca
     1801 gcggccgggc cagttcgctg accgtggcag gccccgcgac cagccgctca acaatggcgc
     1861 ggcgggccgg atcggccagg gcggcaaagg tcttgtccag ttgatagtta agcatatact
     1921 taagtatcag agaccagccc tgtttggcaa gcaggccagc cgcgattatt tttgcagccc
     1981 ggactggggt atgttgcgcc gccaaacagg acgacgcccc aggagatatc catgtccgtc
     2041 cagacccagc tcaagcgcat cacggttccc gaaatccgcg cccacaaggg cgcggcgccc
     2101 atcgtctgcc tcacctgcta tcacgcccac accgcgcggc tgctcgacaa ccatgtcgat
     2161 ctgatgctgg tgggcgacag cttgggcatg gtgatgcacg ggctggaaac caccttgggt
     2221 gtgacgctcg acatgatgat cacccacgcc aaggcggtga tgcgcggctc ccagcgcgcg
     2281 ctggtgacgg tggacatgcc gttcggcagc tatgaggaaa gccccgcggt ggcgttccgc
     2341 aacgccgccc gcgtccttca ggaaaccggc gccaccgcgg tgaagctgga aggcggcacc
     2401 cgcatggcgc aaaccatcca atatcttacc cagcgcggca tcccggtgat gggccatatc
     2461 ggactgacgc cgcagatggt gcatgtgaag ggcggctttc acaccaccgg ccgtacgcag
     2521 gcggaatggc cggcgctgct ggccgatgcc catgcggtgt ccgatgcagg cgccttcgcg
     2581 gtggtgctgg aaggcatggc cgaacccttg gccgccaaga tcacccagga gatcgccatt
     2641 cccaccatcg gcatcggcgc cagccctgcc tgcgacggcc aggtgctggt gatggaggac
     2701 atgctgggcc tcaatccctc gcctccaaaa ttcgtgcgcc agtatgccca gctgggcccg
     2761 gccatcgagg cggcggtcga ggcctatgcc caagacgtgc gcgagcggcg cttccctggg
     2821 gtggaaaacg tctatcccat gaaaaaagcc cagtaaaagg ccgcaaaccg ggccaattct
     2881 tacgtccagg cgcattgcgc ggccccggcg cgcgtcgcgc gccaatttaa taaccgcgtg
     2941 cattgcacgc gggctgcgcg cgggctaatt aacacgcctt gtcaaaggct tctcaaaggc
     3001 ccggcccgta agggtcagca aaggccccgg ccccgtgagg ggccaatcaa aggaacgtgc
     3061 ccggtgagtg atattttccg cgaagtcgag gaagacgttc gccgcgagcg gttcgagaag
     3121 ctgtggaagg cctatggcag ctacgccatc gcggccctcg tgctgctgtt cgccggcatc
     3181 ggcggctggc agtggtggca gcgccacgac cagcaggagc gcgagaaagt ctccgacgcc
     3241 tttgtcgcca cccagcgcat ttccaatccc caggccgccg ccagcacctt cgccgatctg
     3301 gcgcacactg cccccaaggg ctacgccacc gtggcgcgcc tttccgaagc gggcgccatg
     3361 ctggcttcgg gtcagcgcgg tccggccatt gatctctata agcagatcgc caaagacgat
     3421 agcggcacga tcggtgcggt ggcacggctg cgcgccgcct gggcgctggc cgaaagtgct
     3481 tcgcgcggcg acctgaccga cctgctgaag cccctggacc agccgggcaa cgcctggcgc
     3541 gagaatgccc aggaaattct ggcctatgcc gactaccgcg ccatggatac aaaatcggct
     3601 ctggcgaaat attccctgct ggcgctggac cccgaagcgc ccgacgcgct gcgcgcccgc
     3661 gccaagacga tggccgcttt cctgaagaat ggcggcgcca tcagctatgg cagcgtcccc
     3721 gccgatgccc cggccccgcc gccgcaggcg gccgcttcgc ttgcgaatgg cgctcccgcc
     3781 gcagccacgc cgccgccggc gaaataagat gaagtctcgc agtggcaggt ttgtgctggt
     3841 gctggccgcg gcttcgctgc tgctgggcgg ctgttcggtg ttcagcgaag tgggcagctg
     3901 gtttgccagc agcggcaaga aatccaattt gcgcggtgtg cgcattccgg tgatgtcgct
     3961 ggactccgac ctgaaggtgg acgccaccct ggcgggcacg ccggtgcagt tgccgccgcc
     4021 ctatcgcaac cccgaatggc cgcagcccgg cggctatgcc tccaacgcca tgtatcacct
     4081 ggcggtaccg ggtcgcttgc gccagatctg gagccaggat gccggcaagg gcaacgatgt
     4141 cgattcccat ctcacctcgg cgccggtggt gggcggcggg ctgatctatg ccctggacgc
     4201 cgaagcgcac atctatgtct tccgcgccgg cgacggccat ccggtgtgga accgccgcct
     4261 ggcgcccaag aacggcaccg acatgccgac cttgtggggc ctgctgggca aagccaacac
     4321 ggtggacccg ccgcaaggca tgggcggcgg cgtcgcctat gacgatggga agattttcgt
     4381 cacctcgggc ttcggcgtcc tcagatgcat ggacgcccgc accggccgcg acatctggca
     4441 aaaagaccta ggcatgccaa tcgtcaatgc cccggtggtg agcggcgggc gcatcttcat
     4501 ctccacccac gacaatcact tctacgccct ggcggaaagc gacgggcgtc aattgtggga
     4561 aaatcagggc attacggaat ccgctggcat cctggcctcc accagtgcgg cggtgtcagg
     4621 cgaaaccgtg atcgcgccct acacctcagg cgagattttc gccctgcgcg tgcagaacgg
     4681 ccaggtgggc tggaccgatg tgctgtcgcg cagcgggcat gtgaccatgc tctccaccct
     4741 ggacaccatc gcaggccgcc ccgtgattga ccgcggcgtg gtctatgcca tcagccagtc
     4801 gggcctgatg gcggccttca gcgtcaatac cggcgagcgg ttgtggtcac gcgatatcgg
     4861 cggcatccag acgccttggg ccgcgggcga ttatgtctat gtgctggaca acaatgcccg
     4921 catcatctgc ctgacccgca aggaaggccg gctgcgctgg attcatcaac tgccgcaata
     4981 tgagaatcct gacgataaga gcgatcccat catctgggcc gggccggtgc tggtgtccga
     5041 caagctgatc gtcacctcgt ccaacggcta tgccgaggcg gtgtcgcctt atgacggcaa
     5101 gctgaccggg cgggtggaaa tcccctccgg caccattatc gcgccgattg tggcggacgg
     5161 gacgatgtat ctctacactt ccgacgccga actcgtggcc ttgcggtagt cttttatggc
     5221 ctatcgcttc gctacatgag gcctatgcgc aatgccgctg aaactcgcca tcgtcggacg
     5281 ccccaatgtg ggcaaatcac gcctctttaa ccggctggcc gggcgcacgg ccgccatcgt
     5341 gcatgacacg ccgggcgtga cccgcgaccg ccaggcggtg gatgcggaat atgaaggcct
     5401 ggcgctgcgc ctgatcgata ccgccggatt cgaagacgcc gccaccggca gcatcgccaa
     5461 ccgcatgacc aggcagaccc tgaccgcgat tgcggaggcc gaagcgctgc tgttcctgat
     5521 cgacgcgcgc gccggggtga cggcgggtga ccagatcatc gcccaagcgt tgcgaaaatc
     5581 aggcaagccg gtgatcctgg ccgccaacaa atgcgaa
//
LOCUS       DATMDK010000056         2349 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2083078,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000056 DATMDK010000000
VERSION     DATMDK010000056.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2349)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2349)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2349
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2083078"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..467)
                     /locus_tag="VNN98_01060"
     CDS             complement(<1..467)
                     /locus_tag="VNN98_01060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008305831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HWM60704.1"
                     /translation="MPRSPRLRNQIIMAKNNPDLFDGPSSASKAYTAKDIEVLEGLEP
                     VRRRPGMYIGGTDVNALHHLAAEIIDNAMDEAVAGHASRIELELKSGNVFSVRDNGRS
                     IPVDPHPKYKNKSALEVIMTTLHAGGKFDSKVYETSGGLHGVGASVVNALSEW"
     gene            625..2052
                     /locus_tag="VNN98_01065"
     CDS             625..2052
                     /locus_tag="VNN98_01065"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing sensor histidine kinase"
                     /protein_id="HWM60705.1"
                     /translation="MSIFRFITEGQEQEPRVLKTQLALAATTARNTRITSPAWAAAVA
                     ILCSTGIFGHVSFAHTLFVPLAVAVGIGASSLMATAYQHYNDSEGDVDSWLNCFVVMQ
                     AFASTAWGLMPWLCWEPGNALNHMFLAACVMAVIAGLVVARGSNMKMYVANLLPLSLM
                     TAARFLLGDSITDIVMGALTPFIAFQMWHTGRPLVLRMGEDARLRFKVEDLARELEET
                     RDEALKKRFEAETANASKTAFLANMSHELRTPLNAILGFSEIISQECFGPVGSERYRD
                     YAGDIHFSGAHLLSLINDLLDVAKIEAGRMDILPHPLDAAHTFDIALKLIGTKAREKD
                     QTLVIAVEENAPPLYADERAVKQILINLVSNAVKFTPLGGRIEVIAGRAANGDFQIMV
                     RDNGPGIPREKLDMIFTPFNQVDNRFDRQAGGTGLGLALVRGLAELHGGRAWMESEFG
                     RGCSVFVTLPVKKPEAADAMTSAVA"
     gene            complement(2049..>2349)
                     /locus_tag="VNN98_01070"
     CDS             complement(2049..>2349)
                     /locus_tag="VNN98_01070"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM60706.1"
                     /translation="FGGGTPYTGAGGSHAHMIGRHMGRHLTETQRKRWIDLMLETVDE
                     IGLPADPEFRAALVGYLEWGTRLAVLNSQDGVTKPDDATPMPQWNWGPPGGPWMG"
BASE COUNT          420 a          737 c          720 g          472 t
ORIGIN      
        1 atccattccg acaaggcatt gaccaccgag gcgccgacgc cgtgcagtcc gccggaggtc
       61 tcatagactt tgctgtcgaa ctttccgccg gcatgcagcg tggtcatgat cacttccagc
      121 gccgacttgt tcttgtattt ggggtggggg tcgaccggta tgctgcggcc attgtcgcgc
      181 acactgaaca cattgccgct cttcagttcc agctcgatgc ggctggcatg gcccgccacc
      241 gcttcgtcca tggcgttgtc gatgatttcg gcagccaagt gatgcagggc gtttacgtcg
      301 gtgccgccga tatacatgcc ggggcggcgg cgcaccggct ccagcccttc cagcacctca
      361 atgtccttgg cggtataggc cttggacgcg ctggacggtc cgtcgaacag gtcgggattg
      421 tttttggcca tgatgatctg gttgcgcaat ctaggtgaac ggggcatccg caaaaacccg
      481 cgaatcgggc atttccaccc ctgttttact tttcctcaac catgaaaagc gagccaaaag
      541 ggcaatacac caaaagcgcg gggccaaagg tattattaag agccggcccg ccataatggc
      601 cctgtgggag aacaggttac cggcgtgtcg atctttcgtt tcatcaccga ggggcaggag
      661 caggagccgc gggtcctgaa gacgcagctt gcgcttgccg ccaccacggc gcgcaacacc
      721 cgcatcacct cgccggcttg ggccgccgcc gttgccatcc tgtgctccac cggaatcttc
      781 ggacatgtca gctttgccca cactttgttc gtgcccctgg cggtggcggt aggcatcggc
      841 gccagttcgt tgatggcgac agcctatcag cactataacg acagcgaagg cgacgtggac
      901 tcctggctca attgctttgt ggtgatgcag gctttcgcca gcaccgcctg gggcctgatg
      961 ccatggctgt gctgggaacc gggcaacgcc ctgaaccaca tgttcctggc ggcctgtgtc
     1021 atggcggtga tcgccggcct ggtggtggcg cgcggcagca acatgaagat gtatgtcgcc
     1081 aacctgctgc cgctgtcgct gatgacggcg gcccgcttcc tgctgggcga ttccatcacc
     1141 gatatcgtga tgggggcgtt gacgcccttt atcgccttcc agatgtggca taccggccgg
     1201 ccgctggtgc tgcgcatggg cgaggatgcc cgtctgcgct tcaaggtcga ggacctggcc
     1261 cgcgagctgg aagagacccg cgacgaagcg ctgaagaagc gttttgaggc ggaaaccgcc
     1321 aacgcctcca agaccgcctt cctggccaat atgagccatg agctgcgcac accgctgaac
     1381 gccattctgg gcttttcgga aatcatctcg caggaatgtt tcggcccggt gggctccgag
     1441 cgctaccgcg attatgccgg tgacatccat ttctccggcg cgcatcttct gtcgctgatc
     1501 aacgatctgc tggatgtggc caagatcgag gccggccgca tggatatttt gccccatccg
     1561 cttgacgctg cccacacctt tgacatcgcc ttgaagctga tcggcaccaa ggcccgcgaa
     1621 aaagaccaga cattggtaat cgcggtggaa gaaaatgccc cgccgcttta tgccgacgag
     1681 cgggcggtga agcagatact gatcaatctt gtgtccaatg cggtgaagtt caccccgctg
     1741 ggcgggcgca tcgaggttat cgccggccgc gccgccaatg gcgacttcca gatcatggtg
     1801 cgcgacaacg gacccggcat tccgcgcgag aagctggaca tgatctttac ccccttcaac
     1861 caggtggaca atcgtttcga ccgccaggcg ggtggcaccg gcctgggcct ggcgctggtg
     1921 cgcgggctcg ccgaactgca tggcggccgc gcctggatgg aaagcgagtt tggccgcggt
     1981 tgctcggtgt tcgtgacttt gccggtcaag aagcccgaag cggcggacgc gatgaccagc
     2041 gcggtcgctt aacccatcca cgggccgccc ggaggccccc aattccattg cggcataggc
     2101 gtggcatcat ctggcttggt cacgccgtcc tgcgaattca gcactgccag ccgcgtgccc
     2161 cattccagat agcccaccaa tgcggcccga aattccggat cggcgggcag gccgatttcg
     2221 tccaccgtct ccagcatcag atcaatccag cgcttgcgct gcgtctcggt gagatgccgg
     2281 cccatgtgac gcccgatcat atgggcgtgg ctgccgcctg cacccgtata gggcgtgccg
     2341 ccgccgaat
//
LOCUS       DATMDK010000057         2150 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_3230080,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000057 DATMDK010000000
VERSION     DATMDK010000057.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2150)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2150)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2150
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3230080"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            97..321
                     /gene="rpmE"
                     /locus_tag="VNN98_01075"
     CDS             97..321
                     /gene="rpmE"
                     /locus_tag="VNN98_01075"
                     /inference="COORDINATES: protein motif:HMM:NF001809.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L31"
                     /protein_id="HWM60707.1"
                     /translation="MKKGIHPDYHFVDVQLNDGTTYRTRTTHGVAGQKITLDIDPSTH
                     PAWTGGQQQLMDRGGRLTRFNKKFAGFVKG"
     gene            complement(397..879)
                     /locus_tag="VNN98_01080"
     CDS             complement(397..879)
                     /locus_tag="VNN98_01080"
                     /inference="COORDINATES: protein motif:HMM:NF018972.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1465 family protein"
                     /protein_id="HWM60708.1"
                     /translation="MLTNTTESFTDSAMFDRTFDEGMALVEETARYLDGKGREEARTL
                     PRKAAMLYAGESMRVTTRLMQAASWLLVQRAVRDGDMERDDALNDRYRLGSREICLGA
                     CAEDTAPLPGPLIDLLARSDSLYRRIARLDDILFGEGETPPPGARGQMDTLAQAFSGK
                     "
     gene            complement(1076..1279)
                     /locus_tag="VNN98_01085"
     CDS             complement(1076..1279)
                     /locus_tag="VNN98_01085"
                     /inference="COORDINATES: protein motif:HMM:NF018413.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1192 domain-containing protein"
                     /protein_id="HWM60709.1"
                     /translation="MDPEDLLPRKKLPENSSGIVLGEDISALSAHELEKRIARLEEEI
                     ARCNVAIKARQATKSAAENFFKK"
     gene            1336..>2150
                     /locus_tag="VNN98_01090"
     CDS             1336..>2150
                     /locus_tag="VNN98_01090"
                     /inference="COORDINATES: protein motif:HMM:TIGR02824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-quinone oxidoreductase"
                     /protein_id="HWM60710.1"
                     /translation="MKAIQIEQPGKEYQLAVGGQSRPAPGPGAVLIRVAAAGLNNADL
                     LQARGLYPPPPEASPILGMEVSGTIAELGAELGAELGEGATGWKIGDRVCALLAGGGY
                     AEYAVADAGSVLPIPETIDLVAAAGLPEAAFTAWTNIMDTGRLAPSESLLIHGGTSGI
                     GSLAIQIFAARGHRVFTTAGSEEKCAAARTFGAARAINYRSEDFAAAVKDETGGKGVD
                     VILDMVGGDYIQRNIDAAAAWGRIVNIAYQSGFKAEVNFGPVLTKRLTLAATT"
BASE COUNT          379 a          690 c          691 g          390 t
ORIGIN      
        1 ggggtttggt ccttgcgggg ccggggggcc ttcccgtata agcccccgct tccggcgcct
       61 gtcagaatag gcgccgcgcc acgaaaggtt cgcgtcatga aaaagggcat ccaccccgat
      121 tatcactttg tcgatgttca gctgaacgac ggcaccacct acaggacgcg caccacccat
      181 ggcgtagcgg gccagaagat cacgctggac atcgatccca gcacccaccc ggcctggacc
      241 ggcgggcagc agcagctgat ggatcgcggc ggccgcctga cgcgcttcaa caagaagttt
      301 gccggctttg tgaagggctg aacgtccttc cacggaatac aaaacgccgc ccttccgggc
      361 ggcgtttttg tttgggccgc accgggcgcc gccgctctac ttgccgctga aggcttgggc
      421 cagcgtatcc atttgaccgc gcgcgccggg cggcggcgtc tcgccttcac cgaacaggat
      481 atcgtccagc cgggcgatgc ggcgatacag gctgtcgctg cgcgccaaaa ggtctatcag
      541 cgggccgggc aagggcgcgg tatcctcggc gcaggcaccc aggcagattt cccggctgcc
      601 caaccgatag cggtcgttca gcgcgtcgtc gcgttccatg tcgccgtcgc gcaccgcgcg
      661 ctgcaccagc agccagcttg ctgcctgcat caggcgggtg gtgacgcgca tgctttcccc
      721 ggcatagagc atcgccgcct tgcgcggcag ggtgcgggcc tcttcgcggc ccttgccgtc
      781 gagatagcgg gcggtttcct ccaccagcgc catgccttca tcgaaggtac gatcgaacat
      841 cgcggagtcc gtgaagctct cggtagtgtt ggtgagcatg gtgtctccgg cgggcgcgaa
      901 aggcaccccg tgtttcaaaa ttatgccgcg acgctaccaa gccgcgcgcg ggccgaaaag
      961 cggattgctt ggtaaacagc ccaaatatgc accgtcatgc ttatttcagc tgtgcaaatt
     1021 aacgttttaa ccgtggcctt gactgttcct gggcgcttgg cggcaccgga ggcggtcact
     1081 ttttgaagaa attctccgcc gccgatttgg tggcttggcg cgctttgatc gccacattgc
     1141 agcgggcgat ttcctcttcc agccgggcga tgcgcttttc cagttcgtgc gccgacagag
     1201 cggaaatatc ctcgcccagc acaatgccag atgaattttc tggcagcttc ttgcgcggca
     1261 gcagatcttc cgggtccatc gcgttttgcc tccggttcgg gtttagtctg tctccgcaca
     1321 caagacggcg caagcatgaa agccatacag atcgagcagc ccggcaagga ataccagctg
     1381 gccgtgggcg ggcaatcccg tcctgcaccc ggccccggcg cggttctgat ccgggtcgcg
     1441 gcggcgggcc tcaacaatgc agacctgttg caggcgcgcg gactctatcc gccgccgcca
     1501 gaggcctcgc ccatcctggg catggaagta tcaggcacca tcgccgaact gggcgccgaa
     1561 ctgggcgccg aactgggcga gggcgccacc ggctggaaaa tcggcgacag ggtctgcgcc
     1621 ctgctggcgg gcggcggata cgcggaatat gcggtggcgg acgcgggttc ggtgctgccg
     1681 ataccggaga caatcgatct ggtggcggcg gcgggattgc cggaagccgc tttcaccgcc
     1741 tggaccaaca tcatggatac ggggcggctg gcgcccagtg aaagcctgct gatccatggc
     1801 ggcaccagcg gcatcggcag cctggccatt cagatctttg ccgcgcgcgg gcaccgtgtc
     1861 ttcaccactg ccggcagcga ggaaaaatgt gcggcggcgc ggacattcgg cgcggcccgc
     1921 gccatcaatt atcgcagcga agatttcgcg gctgcggtga aggatgaaac cggcggcaaa
     1981 ggcgtggacg tcatcctgga catggtcggc ggcgattata tccaacgcaa tatcgacgcc
     2041 gccgccgcct ggggccgcat cgtcaacatc gcctatcaaa gcggcttcaa ggccgaggtg
     2101 aatttcgggc ccgtcctgac caagcggctg accctggcgg ccaccacctt
//
LOCUS       DATMDK010000058         3182 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2313197,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000058 DATMDK010000000
VERSION     DATMDK010000058.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3182)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3182)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3182
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2313197"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1288
                     /locus_tag="VNN98_01095"
     CDS             <1..1288
                     /locus_tag="VNN98_01095"
                     /EC_number="4.6.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012437.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009975 - cyclase activity [Evidence IEA];
                     GO_function: GO:0016849 - phosphorus-oxygen lyase activity
                     [Evidence IEA];
                     GO_function: GO:0032555 - purine ribonucleotide binding
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="adenylate/guanylate cyclase domain-containing
                     protein"
                     /protein_id="HWM60711.1"
                     /translation="LATKAEALLVLGQQAGAVLEAAGALGVSPSSLASTKKQLLAVCA
                     ARGLPISLLEGLRIPSVVYYCGHQSLAEQDAAQLPQEIAAQLRQLNAGFVFGSLASGG
                     DILLAEAALAAGLELHVVLPYRAEDFLRSSVAPGWESRFRTCMVRARTVSFVIDNDVL
                     AHDCVYALCGSHAMGMARRHADALAAGICQLAVWDGLPAKAVATTAARVAQWAGLGLA
                     SIIVPPRGKPYRLAAAPPPPADGIKQDVVARSFLFADVRGFSKLPERNMEVFVAAYLG
                     ALAEVIKRFAGDIDYRATAGDGIFLVFRTPAQAVECAVAMQQRSQSFDHARHGIDVNL
                     QLRIAIHHGPAHPVRDPILDKDSFAGREIIRAARIEPVTPPGEIYVTEQLASALFLAG
                     VKAWRCDYVGIQPAAKGFGNFRMYSIKPRGEPLAPG"
     gene            1435..2754
                     /locus_tag="VNN98_01100"
     CDS             1435..2754
                     /locus_tag="VNN98_01100"
                     /inference="COORDINATES: protein motif:HMM:NF024827.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multiheme c-type cytochrome"
                     /protein_id="HWM60712.1"
                     /translation="MLLPALFFAASALTPALAADASGTHEGVASCGGSTCHGRLAPTG
                     KEVRQNELITWQDTASAAGTHSQAWQVLNRSRAQSIAQRLGLGAAQNAKECLGCHAEP
                     AAARAAKFQISDGVGCEACHGGAGGWLVSHYTLGVSHADNVKAGMTALEDPRARAGVC
                     LDCHFGSARTGQFVTHKMMAAGHPRVSFELDLYSALQRHYDFDADYVKRKPLASGVKF
                     WAVGQAMAVERALTLYADGVHSNEGAFPEFYFFDCQSCHRRISDEPNAALTAEANPAR
                     PLPPGTPPFNDENMIMLSAVARVAAPAEGESFDAAAHSFHAAMAQNKDGTGAAAQLAG
                     AARTLANTLAAHAFTRAETFAALEAVLDGAAARYTDYEGGAQAVMAADTLLNSLVAQG
                     QIARAGAESVRPQINRLYAEVRDTNNWRPAEFRDAMRQLAGAVGRLK"
     gene            2751..>3182
                     /locus_tag="VNN98_01105"
     CDS             2751..>3182
                     /locus_tag="VNN98_01105"
                     /inference="COORDINATES: protein motif:HMM:NF015862.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme-binding protein"
                     /protein_id="HWM60713.1"
                     /translation="MSSRSFLSLALSGLLVLAACGKNDGSAASNTGSNNSTPSTATAT
                     TASSSVFSVPGSEALTVADVQKIISRAVAEASAQGKPAVIAVVDRVGNVLAVYSMSGA
                     PTTATVRAAANPANNTDLQGLSVPAGGAAIAKAITGAYLSSG"
BASE COUNT          508 a          996 c         1076 g          602 t
ORIGIN      
        1 gctggcgacc aaggccgaag cgctgctggt gctgggccaa caggccggcg cggtgctgga
       61 ggccgccgga gcgctgggcg tgtcgccgtc aagtcttgcc tccaccaaga aacagttgct
      121 ggcggtatgc gcggcgcgcg gcttgcccat ctcgctgctg gaaggcttgc gcattccgtc
      181 ggtggtttac tattgcggac atcaaagctt ggccgagcag gatgcggcgc aattgccgca
      241 ggaaatcgcc gctcagttgc gccagctgaa tgccggtttc gtcttcggct cgctggccag
      301 cggcggcgac attctgctgg ccgaagcggc gctggcggcg ggcctggagt tgcacgtcgt
      361 gctgccttac cgggccgagg atttcttgcg cagttcggtg gcgccgggct gggaaagccg
      421 tttccggact tgcatggtgc gggcccgcac agtttccttt gtgatcgaca atgatgtgct
      481 ggcgcatgac tgcgtctatg ccctgtgcgg cagtcatgcc atgggcatgg cgcgccgcca
      541 tgccgacgcg ctcgcagccg gtatctgcca gcttgccgtg tgggacggct tgcccgccaa
      601 ggcagtggcc acgaccgcag cgcgcgtggc gcaatgggcg ggcttggggc ttgccagcat
      661 catcgttccg ccgcggggca agccctaccg gctggccgca gccccgccgc cgcccgcgga
      721 cggcatcaag caggatgtgg tggcgcgttc cttcctgttt gccgatgtgc gcggcttcag
      781 caaattgccc gagcggaata tggaggtctt cgtggcggcc tatctggggg cgctggccga
      841 agtgatcaaa cgtttcgcgg gcgatatcga ttatcgcgcc acggcgggcg acgggatttt
      901 tctggtcttc cgcaccccgg cccaggcggt ggaatgcgcc gtcgcgatgc agcagcggtc
      961 ccagtccttc gaccatgccc gtcacggaat tgatgtgaat ctgcaacttc gcatcgcgat
     1021 ccatcatggc ccggcgcatc ccgtgcgcga tccgatcctg gataaagatt ctttcgccgg
     1081 ccgggagatc atccgcgccg cgcgcatcga gccggtgacc ccgccggggg agatatacgt
     1141 caccgagcag ttggccagcg cgctgtttct ggcgggggtg aaggcctggc gctgtgacta
     1201 tgtcggcatt cagcccgccg ccaagggatt cggcaatttc cgcatgtatt cgatcaagcc
     1261 gcgcggcgaa ccacttgctc caggctgatt atttgtcagt tccgtcagtt gctttcatgg
     1321 caaggctgaa actgctagaa aatcgaggtc tttggcggaa aattgccaag gtctgggcag
     1381 gggattttgg tggcaggctt tcggctggga gagggtgtac gtgcctgcgg cttgatgctc
     1441 ctgccggctc tgttttttgc tgcttctgct ctcacgcccg ccttggccgc cgatgcatcc
     1501 ggcacccatg aaggtgtcgc cagctgtggc ggttcaacct gccatggccg gttggcgccc
     1561 accggcaaag aggtgcgtca gaacgaactg atcacctggc aggatacggc gtccgcggcg
     1621 ggtactcaca gtcaggcctg gcaagttctc aatcgcagcc gcgcacaaag catcgcgcag
     1681 cgtttgggcc ttggcgcggc gcagaacgcc aaagagtgtt tgggctgtca cgccgaaccg
     1741 gccgcggcgc gggctgcgaa attccagatt tccgacggcg tgggctgcga ggcctgtcat
     1801 ggcggcgcgg gcggctggct ggtgagccat tataccctgg gcgtcagcca tgccgacaat
     1861 gtcaaagccg ggatgaccgc gctggaggat ccgcgcgccc gcgccggcgt ttgcctggat
     1921 tgccatttcg gcagcgccag gaccggccag ttcgtcaccc acaagatgat ggcggcgggc
     1981 catccgcgcg tgtcctttga gcttgatctc tacagcgccc tgcagcgcca ttatgatttc
     2041 gacgccgatt atgtgaaacg caagccgctg gccagcggcg tcaaattctg ggcggtgggc
     2101 caggcgatgg cggtggagcg cgctttgacg ctttatgctg acggcgttca tagcaatgaa
     2161 ggcgccttcc cggaattcta tttcttcgat tgccagagct gtcaccggcg catctccgac
     2221 gagcccaatg cggcgctgac ggcggaagcc aatcccgcgc ggccgctgcc gccgggcacc
     2281 ccgcctttca atgatgaaaa catgatcatg ctgtcggcag tggcgcgcgt tgccgctccc
     2341 gccgaaggcg aaagcttcga tgccgcggcg cacagcttcc atgccgccat ggcgcagaac
     2401 aaggacggca ccggggctgc tgcccagctt gcgggtgcgg cgcggaccct ggccaatacg
     2461 cttgcggccc atgcctttac ccgcgccgaa actttcgcgg cgctggaggc ggtgctggac
     2521 ggggccgcgg cgcgctacac cgattatgaa ggcggcgccc aggcggtgat ggctgccgat
     2581 accttgctga attcgctggt ggcccagggc cagatcgcgc gcgcgggcgc ggaaagcgtg
     2641 cggccccaga tcaaccggct ttatgccgaa gtgcgtgaca ccaacaattg gcgcccggcg
     2701 gagtttcgcg acgccatgcg gcagttggcg ggcgcggtag ggagactgaa atgagttcgc
     2761 gttcgttcct gagcctggca ttgagcggct tgttggtgct cgccgcctgc ggcaagaatg
     2821 acggcagcgc cgcgtccaat accggttcga acaattccac gcccagcacg gccaccgcca
     2881 cgaccgcttc gtccagcgtc ttcagtgtgc ccggttcgga ggcgctgacc gtcgcagacg
     2941 tgcagaagat catctcccgc gccgtggccg aagcatcggc gcaaggcaag cccgcggtga
     3001 tcgcggtggt ggaccgtgtc ggcaatgtgc tggcggtcta tagtatgtcc ggcgcgccaa
     3061 ccaccgcgac cgtgcgggcc gccgccaatc ccgccaataa tacggacctg caaggtctat
     3121 cagtgccggc gggcggcgcc gccatcgcca aggcgattac cggcgcgtat ctgtcatccg
     3181 gc
//
LOCUS       DATMDK010000059         2163 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1173348,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000059 DATMDK010000000
VERSION     DATMDK010000059.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2163)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2163)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2163
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1173348"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..659
                     /locus_tag="VNN98_01110"
     CDS             <1..659
                     /locus_tag="VNN98_01110"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM60714.1"
                     /translation="TSGDLAHIGEALMDGTSKSGTPLISPFVKEKLFSQEVQVPREIS
                     PMRITRWRVSAFGLGMAHFQGGHCGTLTTGRGQNSAIIFDKDRHSALAMAMNSTNVLE
                     REALLNTLFAKFAGDTSIRSEPKTIDMDFDEFIKPFSTRDIGGVYAGFTPDPIEIYAA
                     PRSFTLHIEKKEQYRFEASPENRLMMHARMPMPVGLFQDPVSRRPCIMMAMHAFKKVG
                     "
     gene            881..>2163
                     /locus_tag="VNN98_01115"
     CDS             881..>2163
                     /locus_tag="VNN98_01115"
                     /inference="COORDINATES: protein motif:HMM:NF012711.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="long-chain fatty acid--CoA ligase"
                     /protein_id="HWM60715.1"
                     /translation="MPTSNNELLQDNSPFALTTARVAGRNQAIFRYGAKTLTEIYRKA
                     ARLKDAPFLVNDTGAITYEALFQQAAAHAALFAGRGIVKGMRVPLAPHNDAGWIASFI
                     ALTSLGATAVLINGSSMKSLHQVAAAECDTAIVDNPPDPTQKTVISENGSAAVQSDQI
                     KLPESEIDPEQEACIAFTSGSTGDPKGAILTHRGMTTGLMNMMLAGAMAARGAPGARQ
                     PMTRPVTPSVLLRTPLSHVSAYMQVLLMFMIGGRVVRSDRADICQLIADHQITSVTGI
                     SDAEIAMLLAATSGLGPLRSIAVAGRSLPAKLRRTLRENLPGLGVGSGYGLTETNGLV
                     SAISNSELDSRPLAVGPVLPTVECRILGKDGEACSAGESGQISLRGAMLMKGYCNAPR
                     HATPDDRSTGGWFNTGDIGYLSNDGYLHVLDKSDR"
BASE COUNT          434 a          684 c          646 g          399 t
ORIGIN      
        1 tgaccagcgg cgatcttgcc catatcggcg aagcgctgat ggacggtaca tcgaagtccg
       61 gcacgccgct gatatcgccc ttcgtgaagg aaaagttgtt ttcccaggaa gtgcaggtcc
      121 cgcgggaaat cagcccgatg cgcatcaccc gctggcgggt cagcgccttt gggcttggca
      181 tggcgcactt tcagggcggc cattgcggca ccctgacgac tggccggggc cagaacagcg
      241 ccatcatctt cgacaaggac aggcattcgg ctttggccat ggcgatgaat tcgaccaatg
      301 tgctggagcg cgaggcgctg ctcaatacac tgttcgccaa attcgccggg gacacttcca
      361 tccgctccga gccaaagacc atcgacatgg attttgatga attcatcaag cctttttcca
      421 cgcgcgacat cggcggcgtc tatgccggct tcacgccgga tcccatcgag atatatgccg
      481 ccccacgcag cttcacactt catatcgaaa agaaggaaca ataccggttt gaagcttcgc
      541 cggagaaccg gttgatgatg catgccagaa tgcccatgcc tgtggggtta ttccaggatc
      601 ccgtatcgcg gcgtccctgc atcatgatgg cgatgcatgc cttcaaaaag gtcggctagc
      661 cgtgcagaga ccagcggaaa agccgtcaaa gcttgatccg tctcaagccg ctgtcccggc
      721 cccgcctcgg aaggaaaaac cgggggcggc ggatgaattg cccggcagca cgcagccaaa
      781 tgatagtggc aaggacagcg tccgtcgcga aagctattcg ctggaagatc tcttcctgtt
      841 cgatcccact tttgagagtt gctggtaagc cgtgatcccc atgcctacga gcaacaacga
      901 actgttacag gacaactccc ctttcgccct gacgacggcg cgggttgctg ggcgcaacca
      961 ggccatcttc cgctacggcg cgaagaccct gaccgagatc taccgcaagg cggcccgctt
     1021 aaaggatgcg ccattcctgg tgaacgacac cggcgccatc acttacgagg ccttgttcca
     1081 gcaagccgcg gcccatgcgg cgctgtttgc cggccgcggc atcgtaaagg gcatgcgcgt
     1141 ccctctcgcc ccgcacaatg acgccggctg gatcgcctcg ttcatcgcct tgacctcgct
     1201 gggcgccacc gcggtcttga tcaatggctc cagcatgaaa tccctgcatc aggtcgccgc
     1261 ggccgaatgc gacacagcca ttgtggacaa cccacccgac ccaacccaga aaacagtcat
     1321 cagcgaaaac ggctctgctg ccgtgcaaag cgatcagatc aagctgccag aatctgagat
     1381 cgatccggaa caggaagcct gcatcgcttt tacctcgggc agcaccggcg atcccaaggg
     1441 cgctatcctg acacatcgcg ggatgacgac cgggttgatg aacatgatgc tggcaggcgc
     1501 gatggccgcg cggggcgcgc cgggcgccag gcagccgatg accagacctg tcacgccatc
     1561 ggtgctgctg cgcacgccgc tgtcgcatgt cagcgcctat atgcaggtgc tgctgatgtt
     1621 catgatcggc ggccgggtcg tccgctccga ccgggcggac atctgccagt tgatcgccga
     1681 tcaccagatc acgtccgtca ccgggatatc tgacgcggag atcgccatgc tgctagcggc
     1741 gacttccggg ctcggcccct tacggtccat cgcggtggcg gggcgcagcc tgcctgcgaa
     1801 gttgcgccgc acgttgcggg aaaatctgcc cggcctgggc gtcggctcgg gctatggcct
     1861 gaccgaaacc aacggcctgg tctcagccat cagcaacagc gagttggaca gccggcccct
     1921 cgcggtgggg cccgtattgc ccacagtgga atgccgcatc ctgggtaagg atggcgaggc
     1981 ttgctcggcc ggcgaaagcg gccagatctc gctgcgaggg gcgatgctga tgaagggcta
     2041 ttgcaacgcg ccgcgccatg cgacacccga tgatcggtct actggtggct ggttcaacac
     2101 cggcgacatc ggctatctct ccaatgatgg ctatctgcat gtgctggata agtcagaccg
     2161 ctt
//
LOCUS       DATMDK010000060         5616 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2085911,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000060 DATMDK010000000
VERSION     DATMDK010000060.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 5616)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5616)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5616
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2085911"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..222
                     /locus_tag="VNN98_01120"
     CDS             <1..222
                     /locus_tag="VNN98_01120"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM60716.1"
                     /translation="WGAVGAELASCRDGALKRRWYDAEQKLRNQIDRSYEARMDFTLE
                     ELEAGRSGVPAPPDTDTRAYLISEQQKRR"
     gene            complement(331..1467)
                     /locus_tag="VNN98_01125"
     CDS             complement(331..1467)
                     /locus_tag="VNN98_01125"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM60717.1"
                     /translation="MTVRKLHAAVTAILLGTAAAGATALVLAAPAQAATVSAKVGPLL
                     KEAQALIAAKNYKAAQAKLNEAEAVKSTPDDTAIINQFKSAISISSADPNTPGGAKAK
                     FAQDYNAGHFKDVIADAEYLRKNNVFDAQSQLIVGQAYYKAGDYAGCVRYTKTLPSSD
                     TALELQARCAYETGDDVTQRQAYEALVARSGKPEYWSGLLKLGERSRGLSDHNTLDIN
                     RLRLLTGSISTKEDYISLAQFALQFTFAAEAASALQKGVDAKVLTDDRSIRLLATAKQ
                     MAAANLANEAKSLAAANAAPQGDDLIKVGENMIGEGKAKDAVGVIQNGLKKPLKDPNN
                     GQIRLGQALLAAGQKAEAQAAFSKVKAPEKDAMVAHLWSLAARH"
     gene            complement(1554..1961)
                     /locus_tag="VNN98_01130"
     CDS             complement(1554..1961)
                     /locus_tag="VNN98_01130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017979405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="biopolymer transporter ExbD"
                     /protein_id="HWM60718.1"
                     /translation="MSTGTAEGEVMVEMNTTPLIDVMLVLLVLLIVTLPIQTHAVKLD
                     MPAANTPPPTVIPETVELGVDFDGTITWNGAPVDRSTMDSYFEDAAKKNPQPEIHVNP
                     NRLAKYDAVARVLADAQRLGATHIGFSGIDQYN"
     gene            complement(1979..2434)
                     /locus_tag="VNN98_01135"
     CDS             complement(1979..2434)
                     /locus_tag="VNN98_01135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014457253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="biopolymer transporter ExbD"
                     /protein_id="HWM60719.1"
                     /translation="MSVDVQHAVEDDEAEMNVTINTTPLVDVMLVMLIIFLVTIPVVL
                     KAVPLQLPTYRNIATQTKPENIVIEVTTDETMYYNHIPVDQPTMRKNFVDALRRAQAT
                     NKPFPEVHIRGDKNVRFEAIGRVILACQQAGIQKVGFITEPHSLEAGSY"
     gene            complement(2470..3288)
                     /locus_tag="VNN98_01140"
     CDS             complement(2470..3288)
                     /locus_tag="VNN98_01140"
                     /inference="COORDINATES: protein motif:HMM:NF013760.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_process: GO:0015031 - protein transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MotA/TolQ/ExbB proton channel family protein"
                     /protein_id="HWM60720.1"
                     /translation="MNFKKLTIAAAIVAMTSLSAVAPVFAQAAAPAAPAADAAAPAPA
                     PAADAAKPAGNTADQSTPYGLQHMVETGGWISRTILGVLVIMSAGTWYIFFTKWIEQQ
                     RLLGQASQVEKKFWTSATLNEGVDKLPKNSVFRGIAEAGLKASTSGSTLVGLNDWIGM
                     TLTRQLEDANSRLQGGVAFLGSVGSVSPFVGLLGTVIGILNALIGIGVAGQMSIDKVA
                     GPVGEALQMTAIGLFVAVPAVLLYNYLVRRNKVITEKLRAFAGDLQAYLISKSK"
     gene            complement(3332..3955)
                     /locus_tag="VNN98_01145"
     CDS             complement(3332..3955)
                     /locus_tag="VNN98_01145"
                     /inference="COORDINATES: protein motif:HMM:NF015506.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015291 - secondary active transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB family protein"
                     /protein_id="HWM60721.1"
                     /translation="MERPNHLQAEKKSAANKATSLAIVIAIHVLGIAGLVAALAQGAL
                     IKQLQEIKATVDTQKTPPKAPPPPPPDLVKPPPPVAIVPEFQVASAPPPPVTTVAKPP
                     PAPPKAVVASSDPLRPVGRTHTLPPYPPISVRLNESGTTLMEVHITTEGNVDDCKVVQ
                     SSSSERLDTAACDFVKTRWRWQPPTNQGAPVAVSTRVSVKWDLKDAK"
     gene            4454..4912
                     /locus_tag="VNN98_01150"
     CDS             4454..4912
                     /locus_tag="VNN98_01150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010659885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HWM60722.1"
                     /translation="MRYLHTMVRVSDLDASLNFYCTMLGLVEVRRIDNEKGRFTLVFL
                     ATPDDAKRIKAEADTALAAESPVVELTYNWDEKGYAGGRNFGHLAYRVSDIYALCEKL
                     VAAGLTINRPPRDGRMAFIRSPDGISVELLQDGQLEPQEPWLSMPNSGSW"
     gene            4912..>5616
                     /locus_tag="VNN98_01155"
     CDS             4912..>5616
                     /locus_tag="VNN98_01155"
                     /inference="COORDINATES: protein motif:HMM:NF013384.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HWM60723.1"
                     /translation="MNFASDNAYGALPAVMTALAAANNGAAAPYGEDAVTTALEARFA
                     QLFGREVAAFPCLTGTAANALTLAVLTPPHGAIFCHADSHIMVHECGAPEFYAHGAKL
                     IGIDGAPEYALGGKLTAQAIARAVDALPRGDVHCVQPFTVSLSQPTELGTVYGLEELA
                     AIAHAVHARGLKLHLDGARFANALAHLNATPAEASWQCGVDALSFGASKGGTLGAEAA
                     IFFDPADAGDFVYRRKK"
BASE COUNT         1028 a         1660 c         1806 g         1122 t
ORIGIN      
        1 tggggcgcgg tgggggccga gcttgcgtcc tgccgcgacg gtgccctgaa gcgccgctgg
       61 tatgacgccg agcagaagct gcgcaaccag atcgaccgca gctatgaggc acggatggat
      121 ttcactctag aggagctgga agcaggccgc agcggcgtcc cggcgccgcc cgacacggac
      181 acgcgcgctt atctgatctc ggagcaacaa aaaaggcgct gactttggct tagcttttct
      241 tggcgagcat agcgagccta gaaaagcttg cccctcttcg aacgaagcga gggaggggcc
      301 agcgcctttt gtaccgttgg gccgtcgccg ttagtggcgg gcggccagcg accagagatg
      361 cgccaccatg gcgtcttttt ccggcgcttt tactttgctg aaggcagcct gcgcctcggc
      421 cttctggccg gcggcgagta gcgcctggcc caagcgaatc tggccgttat tgggatcctt
      481 aagcggcttc ttgaggccgt tctggatcac gcccaccgcg tccttggcct tgccttcgcc
      541 gatcatattc tcgcccacct tgatcagatc gtcgccctgc ggcgcggcat tggcggctgc
      601 caaactcttg gcttcattgg ccaggttggc ggcggccatc tgcttggcag tcgccagcaa
      661 gcggatggaa cgatcatcgg tcaggacctt cgcatcaacg cctttttgca gcgcggacgc
      721 cgcttcggcg gcgaaggtaa attgcagcgc gaactgagcc agggagatat aatcttcctt
      781 ggtgctgatg ctgccggtca acaggcgcag gcggttgatg tccagcgtgt tgtggtcgga
      841 aaggccgcgc gaacgctcgc ccagcttcag caggccggac cagtattccg gcttgccgga
      901 acgggccacc agagcctcat aggcctggcg ctgcgtgacg tcatcgccgg tctcataggc
      961 gcagcgcgcc tgcagttcca gcgcggtatc ggagctcggg agcgtcttgg tgtagcgcac
     1021 gcagccggca taatcgcccg ccttgtaata ggcctggccc acgatcaact gggactgggc
     1081 gtcgaaaaca ttgttcttgc gcagatattc cgcatcggcg atcacgtcct tgaagtggcc
     1141 ggcattgtag tcctgggcga acttggcctt ggcgccgccg ggcgtgttgg gatcggccga
     1201 cgatatcgag atcgcgctct tgaactggtt gatgatggcg gtgtcgtccg gcgtggactt
     1261 cacggcttcc gcctcgttca gcttggcctg ggcggccttg tagttcttgg ctgcgatcag
     1321 ggcctgggct tccttaagca gcgggccgac cttggcgctg acggtggcgg cctgcgcggg
     1381 tgcggccagg accagggcgg tggcgcccgc agcggcggtg cccagaagta tcgccgtcac
     1441 ggcggcatgc aatttacgga cagtcataac aagacctctt tcgcgtcatc ataaaaaggg
     1501 aaagcgtgcg gggttgccgc acgctttgca cctacggccg tgaccctcac agcctaatta
     1561 tactggtcaa tcccgctaaa accaatatgg gtcgcaccca gacgctgggc atccgccagc
     1621 acgcgggcaa cggcgtcata cttggccagc cggttgggat taacgtgaat ttcaggctgc
     1681 gggttctttt tggccgcatc ctcgaaatac gaatccatcg tggagcggtc caccggggcg
     1741 ccgttccagg tgatggtgcc gtcaaagtcc acgcccagtt cgaccgtctc gggaatcact
     1801 gtcggcggcg gcgtattggc ggcgggcata tccagcttca ccgcgtgagt ctggatcggc
     1861 agggtgacga tcagaagaac gagaagaacc agcatcacgt cgatcaacgg cgtggtgttc
     1921 atctccacca ttacttcgcc ttcagcggta cctgtactca ttgccatggc ggattacctc
     1981 aatagctgcc ggcttccaga gaatggggtt cggtaatgaa gcccaccttc tggataccag
     2041 cctgttgaca ggccaggatg acgcggccaa tcgcctcgaa acgcacattc ttgtcgccgc
     2101 gaatatgcac ttcggggaac ggcttgttgg tcgcctgcgc ccgcctcagg gcgtccacga
     2161 agtttttgcg catcgtcggt tggtcgaccg gaatatggtt gtaatacatg gtctcgtcag
     2221 tggtgacctc gatcacaata ttttccggct tcgtctgggt ggcgatgttg cggtacgtcg
     2281 gcaactgcag gggcaccgcc ttgagcacca ccggaatagt gaccaggaag atgatgagca
     2341 tcaccaacat cacgtccacc aggggggtgg tattgatcgt gacgttcatc tctgcttcgt
     2401 cgtcttcaac ggcgtgttgg acgtcgactg acatgatttt atctccgggt gcctatctcg
     2461 cgtttcagct tacttgctct tgctgatgag ataggcctgc aaatcgccgg cgaaggcgcg
     2521 cagcttttcg gtgatcacct tgttgcggcg gacgaggtag ttgtacagca gcaccgcggg
     2581 aaccgcgacg aacagaccga tggcggtcat ctgcagcgct tcgccgaccg ggccggcgac
     2641 cttgtcgatg gacatctggc cggcgacacc gatgccgatc agcgcgttca gaatgccgat
     2701 aacggtgccg agcagaccga caaacgggga aaccgagccg accgaaccca ggaaggcgac
     2761 gccgccctgc aggcgggaat tggcgtcttc cagctggcgg gtcagggtca tgccgatcca
     2821 gtcgttcagg cccaccaggg tggagccgct ggtggaggcc ttgaggccgg cttcggcgat
     2881 gccgcggaac accgaattct tcggcagctt gtcgacacct tcattcaggg tggcggaggt
     2941 ccagaacttc ttctcgacct gagaggcctg gcccagcaga cgctgctgct cgatccactt
     3001 ggtgaagaag atgtaccagg tgccggccga catgatcacc agcacgccca gaatggtacg
     3061 cgagatccag ccgccggttt cgaccatatg ctggaggccg tagggggtgg actggtccgc
     3121 cgtattgccg gcgggcttgg cggcatcggc ggccggagcg ggcgccggcg cggcggcgtc
     3181 ggcggcaggc gcagccggag cggcagcctg ggcgaaaacc ggagcaacgg cgctcaggct
     3241 ggtcatggcg acgatggcgg cagcgatcgt cagtttcttg aagttcattt ttctactccg
     3301 tggtaaaccg atgaattgac gtgaggggga tttatttcgc gtccttaagg tcccatttga
     3361 ccgagacgcg ggtggaaacg gcgacgggtg caccctgatt ggtgggcggc tgccagcgcc
     3421 agcgcgtttt cacaaaatcg caggcggcgg tatcgaggcg ctcggaactg gagctctgca
     3481 ccaccttgca gtcgtcgaca ttgccctcgg tggtgatgtg cacttccatc agcgtggtgc
     3541 cggactcatt caagcgcacc gaaatcggcg gatagggcgg cagcgtgtgg gtgcgcccga
     3601 ccggacgcag cgggtcgctg gacgccacca cggccttggg cggagccggc ggcggcttgg
     3661 ccacggtggt gacgggcggc ggcggcgcag aggcgacctg gaattcggga acgatggcga
     3721 ccggcggcgg cggcttgacc agatcgggcg gcggcggcgg cggcgccttg ggcggggtct
     3781 tctgggtatc gacggtggcc ttgatttcct ggagctgctt gatcagcgcg ccctgggcca
     3841 aagccgcgac caggccggcg atgcccagca catgaatcgc gatgacaatc gcgaggctgg
     3901 tcgccttgtt tgccgcactt ttcttttcag cctgcagatg atttggacgt tccatgcgct
     3961 ctcactcaag acaggaaagg acccggcaca aactgtaccc cgggcccaac gaacttttcg
     4021 agaccaaagc tacttaccca acgtgacgcc ctatcagtgg cgtctttcgg ttgcttttaa
     4081 agcaaccgcc taacttcttt gcaaggggga tcaacaggat cgcctgtgac gtcttcctat
     4141 catcagatgg acatgaaagg ccaatggctg gttcaagcca agacgggctg cctccaacat
     4201 gggcaccttc gcacatgcaa tatcgtcctt ttgccccact aaaccttgat agatgcgtgt
     4261 gaaattgact tgcactgatt atgttttacg cttctgcacg cggggaaggc tgtgaactct
     4321 cacaggctga gaccgcgatt ggagttccct tgcgacatct ttgcttttgc cggcgggaaa
     4381 aattcgcgat gctggcggcg atgggcccga ccggggcctc gcggattctc atgacaattc
     4441 aaggatcatt acaatgcgat atctccacac catggtgcgt gtgtccgatc tggacgcatc
     4501 gctgaatttc tattgcacca tgctagggct ggtggaggtg cggcggatcg ataacgaaaa
     4561 aggccgattt acgctggttt tcctggccac gcccgacgat gccaagcgca taaaggcaga
     4621 ggctgacacc gcattggcgg cggaaagccc ggtcgtcgag ctgacatata actgggacga
     4681 gaagggttat gccggggggc ggaattttgg gcacctcgcc taccgggtca gcgacattta
     4741 tgcgctgtgc gaaaagctgg tggcggcggg cctcaccatc aaccggccgc cgcgcgacgg
     4801 ccgtatggcc tttatacggt cacccgacgg catctccgtc gaactgctgc aggatggaca
     4861 gcttgagccc caggaaccct ggctttcgat gcccaacagc ggaagctggt agtgaatttc
     4921 gcctccgaca atgcctatgg ggcgctgcct gcggtgatga ccgccctggc cgcagccaat
     4981 aacggcgcgg ccgcacccta tggcgaggac gcggtcacaa cggcgcttga ggcgcgtttt
     5041 gcgcaattat ttgggcgcga ggtggcggca tttccttgcc tcaccggcac cgccgccaac
     5101 gcgctaacgc tggccgtcct gacgccgccg catggcgcga tcttctgcca tgccgacagc
     5161 cacattatgg tgcatgaatg cggcgcgccc gaattctacg cccatggcgc caagctgatc
     5221 gggatagacg gcgcgcccga atatgccctt ggcggcaagc tgaccgcgca ggccatagcg
     5281 cgcgcggtgg atgccttgcc ccgcggagat gttcactgcg tacaaccttt caccgtcagc
     5341 ctgtcccagc cgacagagct gggcacggtt tacgggctgg aggaactggc cgccatcgcg
     5401 cacgccgtgc atgcgcgtgg gttgaagctg catctggacg gcgcccgctt cgccaacgca
     5461 ctggcgcatc tgaacgcaac accggctgag gccagctggc aatgcggcgt ggacgctctg
     5521 tccttcggcg ccagcaaggg cggcacgctg ggtgcggaag cggcaatctt tttcgatcct
     5581 gccgacgcgg gtgattttgt ctatcgccgc aagaaa
//
LOCUS       DATMDK010000061         2558 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1406719,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000061 DATMDK010000000
VERSION     DATMDK010000061.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2558)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2558)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2558
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1406719"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..281
                     /locus_tag="VNN98_01160"
     CDS             <1..281
                     /locus_tag="VNN98_01160"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013700.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="M23 family metallopeptidase"
                     /protein_id="HWM60724.1"
                     /translation="MRQGARVRQGQVLAYSGMTGMATGPHLHYEIRVGGNQVNPLTVK
                     MAQGRMLLGKLLRTFQEKRLEVDNMVANAPLEAKVADNATDLRQARAK"
     gene            complement(435..1367)
                     /locus_tag="VNN98_01165"
     CDS             complement(435..1367)
                     /locus_tag="VNN98_01165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011646078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS110 family transposase"
                     /protein_id="HWM60725.1"
                     /translation="MMGTYVGIDVSKDRLDVHVLPQDETFCVERNGKGLAALVERLRP
                     LAPSLVAVEATGGFESTTAAAVAGAGLPLAVVNPAQVRHYAQALGKRAKTDPIDAKVI
                     ARFAADVRPQPRPLPDEMTQLLADLVARRRQIVEMLQAERQREKRTTVKRLKKSIARL
                     IAALEKGLAEIDHDIDDAVRGSPAWCEKEDLLASVPGVGPLTARTLMAELPELGTLNR
                     KQIASLAGLAPYTRQSGTWKGKSMIAGGRKTVRTALFMAAMVGARFNPVLKTFRDRLV
                     AAGKPKMLAIIAVARKLLTILNAILRDKNPWQNA"
     gene            complement(1661..>2558)
                     /locus_tag="VNN98_01170"
     CDS             complement(1661..>2558)
                     /locus_tag="VNN98_01170"
                     /inference="COORDINATES: protein motif:HMM:NF013595.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM60726.1"
                     /translation="EILPLRIPGHTLGETEGVTRNKAGHLFVYSRTGWGGSSRGGTAA
                     RLFEFDQNNKYVKEWLPDSYGASFAHAVRVDAQQNVWVVDEGSNTVQKVDPTGMVKMV
                     LGRKPESIDWWEEFVERGSKDTNIHPDGTMGTFNRPTDVAWDAEGDTFVSDGYVNSRV
                     VKISKDGVWQKSFGTYGTGDGQMKIPHGIAVYGDRVYVADRNNSRIQVFDLNLNFQKY
                     ITGIGQPWSVQVTPKYIYSGDGTGKIYRLDHDGKLLGWAQTSLGQGQTGCLIHSLHAE
                     GDNVLYKGACSLWNVEKITFKE"
BASE COUNT          456 a          789 c          818 g          495 t
ORIGIN      
        1 gcatgcgcca gggcgcgcgg gtgcgccaag gccaggtctt agcctatagc ggcatgaccg
       61 gcatggcgac cggcccgcat cttcattacg aaatccgcgt cggcggcaat caggtcaatc
      121 cgctgacggt gaagatggcg caaggccgca tgctgctggg caagctgctg cgcaccttcc
      181 aggaaaaacg gctggaggtc gacaatatgg tcgctaatgc tccgttggag gccaaggtcg
      241 ccgacaacgc caccgacctg cggcaagccc gcgctaagtg acacgccgcc aagcggcgcg
      301 tcatcccgtg agcctcggcg cccgcagggc gtgagcatgt ccagtggaca tgcgaaagag
      361 gcgaacgccg cgagcttggg cgagcggcag gcgagaggcg cgtccagcgc cgagggaagc
      421 gactgtctta tgtgtcaagc gttttgccat gggtttttgt ctctgaggat ggcgttgagg
      481 atggtcagga gctttctggc cacggcgatg atggcgagca ttttgggttt tccggcggcg
      541 acgaggcggt cgcggaaggt tttgagaaca ggattgaagc gtgcgccgac cattgcggcc
      601 atgaagaggg cggtgcgcac ggttttgcgt ccgccggcga tcatgctttt gcccttccag
      661 gttccggact ggcgagtata gggcgccagg cccgcgaggc tggcgatctg cttgcggttg
      721 agcgtaccca gttcggggag ttcggccata agggtgcgcg cggtcagtgg gccgacgccg
      781 gggaccgagg ccagcaggtc ttccttctcg caccaggcag gcgagccgcg cacggcatcg
      841 tcgatgtcgt gatcgatctc ggccagccct ttttcaagcg ccgcgatgag gcgggcgatg
      901 ctcttcttca ggcgcttgac ggtggttcgc ttctcgcgct gccgttcggc ctgcagcatc
      961 tccacgatct gcctgcgtct tgccaccaaa tcggccagaa gctgggtcat ctcgtcgggt
     1021 agagggcgcg gttggggccg cacatcggcg gcgaagcgcg cgatcacctt ggcgtcaatc
     1081 gggtcggtct tggcgcgttt gcccagggcc tgggcgtaat ggcggacctg ggccggattg
     1141 accactgcca gcggcaggcc cgcacccgcc accgccgctg ccgtggtcga ttcaaagcca
     1201 ccggtcgcct ccaccgccac aaggctggga gcaagaggtc tcagccgttc gaccaaagcc
     1261 gccaaaccct tgccgttacg ctccacacaa aaggtctcgt cctgcggcag gacatgaaca
     1321 tccagacgat ccttcgagac gtcgatacca acataagtgc ccatcatcac ccatccttgc
     1381 gcaatcgagc ttcgctgcaa gcggcccaag cgactgttcg ggttcgatag aacggcggat
     1441 gaggccacgc gcttccctac ggcctctcgc gacctggggg actgcggact ctcacccgcc
     1501 accgcaccag ccaatatagc cgatccggac aaatccaagt tacaagggaa cccaggcgtt
     1561 ttccacctat aggtttatgg tacctgggtc cccttcccct cacgccgcta tgcggcgttc
     1621 ggccggggat gacatgttca ggtggtggca ataaagagcg ctactctttg aacgtaatct
     1681 tctccacgtt ccacaaggag cacgcgccct tgtagagcac attgtcgccc tcggcatgga
     1741 gcgaatggat caggcagccg gtctggccct ggcccaggct ggtctgggcc cagcccagca
     1801 gcttgccgtc atggtccagc cgatagatct tgccggtgcc gtcgccgcta tagatgtatt
     1861 tcggcgtgac ctggacgctc cagggctggc cgataccggt aatgtatttc tggaagttga
     1921 ggttcaggtc gaacacctgg atgcggctgt tgttgcggtc cgcgacatag acgcggtcgc
     1981 catagaccgc gatgccgtgc ggaattttca tctggccgtc gccggtgccg taggtaccga
     2041 aggacttctg ccacacgccg tccttggaaa tcttcaccac ccgcgaattg acgtagccgt
     2101 cggagacgaa ggtgtcgccc tccgcgtccc acgccacatc ggtggggcgg ttgaaggtgc
     2161 ccattgtacc gtcgggatga atgttggtgt ccttgctgcc acgttcgacg aactcttccc
     2221 accagtcgat ggattccggc ttgcggccca ggaccatctt caccataccg gtgggatcga
     2281 ccttctgcac cgtgttggag ccttcatcca ccacccagac attctgctgc gcatcgacgc
     2341 gcacggcatg ggcgaatgac gcgccatagg aatcgggcag ccattccttg acgtatttgt
     2401 tgttctggtc gaactcgaac agccgggccg ccgtgccgcc gcgcgaggag ccgccccagc
     2461 cggtgcgcga atagacgaac agatggccgg ccttgttgcg ggtcacgcct tcggtttcgc
     2521 ccaaggtgtg gccgggaata cgcaggggaa ggatttct
//
LOCUS       DATMDK010000062         4468 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_269634,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000062 DATMDK010000000
VERSION     DATMDK010000062.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 4468)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4468)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4468
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_269634"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1898
                     /locus_tag="VNN98_01175"
     CDS             <1..1898
                     /locus_tag="VNN98_01175"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HWM60727.1"
                     /translation="NSSAGIAKGAAPAAGTSNLQASTFYKNNAFLPAAVQTALGNNGT
                     NPLEVQPSALASPNSIQPSNTFQLGEYITGTGPTGLVGTRNVNRSLNITTGLDGTVFG
                     HYNWDLYYTHGENRQAVDNLNNSNYQKQFAASDAVINSSGQVVCYATTPAAGAAANAA
                     YSDCVPINPFGPAAISQAAYKYITATTFYHMTNILDDLGGGISGTVIDDWAGPVTAAL
                     SAEGRFNKYSVLSNSSSLALVNCAGLRICNQNLPLWAQNVLGNVNASNNVWEMAGEAN
                     VPLLKDFPLAEHFDLNLAGRYTNYSTSGAAQTWKIGLNWQVNDSVRFRATNSIDIRAP
                     TLNDLFAPFGQSVTGFTDNGVTNLTQTVFIATQGNPNLTPEVARTYTAGVVVTPDFIP
                     GLTASLDYYTIKLKNAITSLSAASSTVQSVCVASGGTSPLCNLFRRPFPVTNTTPANF
                     PTAVFSESLNAAFTQIEGWDFETDYGWQMSDLVEGWKGSWTARLLANYQPVNESISLP
                     GQTPLTWAAAPKTHVTAFLHYDLDNWAIGVEDHWISGFSKRTTSLNQVYTVPHVHSVN
                     YVDLNLERNFDVDGGKYTGYFTVQNLTNAQSDVYSTSGSVGLTYPIPFGQDLMGRYFT
                     IGIRASL"
     gene            2111..2902
                     /locus_tag="VNN98_01180"
     CDS             2111..2902
                     /locus_tag="VNN98_01180"
                     /inference="COORDINATES: protein motif:HMM:NF006093.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease activity regulator RraA"
                     /protein_id="HWM60728.1"
                     /translation="MNETVDISPQQLDRAALGAVRHEVAPAVGDEVLEKLRHVSTATL
                     ATALFKRGLRNQMIQAVQPLAPLATNMVGIAFTLRYIPAREDLNPISVFDDAEHPQRK
                     AIESCPPGAVLVIDSRGNARAASAGSILVRRLMMRGCAGVVTDGGLRDSAEIAALEIP
                     AFHSRPSAPTNLTLHQAIDINVPIGCGDAPVFPGDVIVGDADGAIVIPAAMAGDIAEE
                     ATRMTVYEDFVVDMVAAGHSIVGLYPMTDPAIRTRFEVWRKEKGR"
     gene            3030..4352
                     /locus_tag="VNN98_01185"
     CDS             3030..4352
                     /locus_tag="VNN98_01185"
                     /inference="COORDINATES: protein motif:HMM:NF024771.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mandelate racemase/muconate lactonizing enzyme
                     family protein"
                     /protein_id="HWM60729.1"
                     /translation="MKHKSHGASRRAFLRSGGALAGAGVAALSSTRLANAAESTRTTI
                     KDIQTMTLGGARTYVFVRVITSDGRYGIGEAYGTPSIGGAEQILSLKPQLVGKNPLEI
                     DKLYTFLGEGAPSLAGTRTDGSAHNLMRAASGIEMALWDLAGRILDTPTSVLLGGQFR
                     DRVRVYDHSAPRDMFDKASCREWADKVRAHPSGFTAHKVDIPRTVSIWSNSKRPNAVP
                     DFAHDPSNRQLTTKELVRIAQGYENMREAIGWDHDLMVHCHWELDLNSALELARAVAP
                     IKPLWLEDPLQVPYTDSWKRLTEESPVPILTGENLERIDGFVPFLVNQGCHIANPDLR
                     NSGGFLESKRIADFASVFGIPMTVHNTGSQLYTYQACQWAASIRDFMACETITGEGGW
                     MDQVLKLDGPYIEKGTVKVSDRPGTGAELNREMVSAHLVPGEKWWGDL"
BASE COUNT          867 a         1411 c         1334 g          856 t
ORIGIN      
        1 ccaacagcag cgccggcata gccaagggcg ccgcccccgc cgcgggcacc agcaacctgc
       61 aggccagcac cttctacaaa aacaatgcct tcctgccggc cgcggtgcaa accgcactgg
      121 gcaataacgg caccaatccg ctcgaggtcc agcccagcgc cctcgccagt cccaactcca
      181 ttcagccaag caataccttt cagctgggcg aatatatcac cggcactggt cccaccggcc
      241 tggtcggcac gcgtaacgtc aaccgcagtc tcaacatcac caccggtctg gatggcacgg
      301 tgttcggcca ctacaattgg gacctttatt atacccatgg cgaaaatcgc caggcagtcg
      361 ataacctcaa caactccaat taccagaaac agtttgccgc gtccgatgcc gtcatcaatt
      421 cgtccgggca ggttgtttgt tacgccacca ccccggccgc gggcgcggcg gccaatgccg
      481 cttattccga ctgcgtcccg atcaatcctt tcggccccgc ggcgataagc caggccgcct
      541 acaaatacat tacggcgacc accttctatc acatgacgaa tattctggac gatctgggcg
      601 gcggcatttc cggcacggtg attgacgatt gggcgggccc ggtcacggcg gcgctgtcgg
      661 ccgaaggccg tttcaacaaa tattcggtgt tgagtaattc atcgtcgctg gccttggtaa
      721 attgcgccgg cttgcgaatc tgcaaccaga acttgccatt gtgggcccag aatgtgttgg
      781 gcaacgtcaa tgcttccaac aatgtctggg aaatggcggg cgaagccaat gtgccgctgc
      841 tcaaggattt cccgctggcc gagcatttcg atcttaacct ggccggccgg tacaccaatt
      901 acagcacctc gggcgcggcg cagacctgga agatcggctt gaactggcag gtgaacgact
      961 cggttcgctt ccgcgccacc aattcgatcg atattcgtgc ccccacgctc aacgacctgt
     1021 tcgcgccgtt cggccagtcc gtgaccggct ttaccgacaa cggcgtcacc aatctgaccc
     1081 agacggtgtt catcgcaacc cagggcaatc ccaacctgac gccggaagtg gcccgcacct
     1141 acaccgcggg tgtcgtggtg acgcctgatt tcatcccggg cctcaccgct tcgctcgact
     1201 attatacgat caagctgaaa aacgcgatca cgtcgctcag cgccgccagc tcaaccgttc
     1261 agtcggtgtg cgtcgcgtcg ggcggcacat cgccgctgtg caacctgttt cggcggccct
     1321 ttcccgtcac caatacgacg ccggcaaact tcccaacggc ggttttctcg gaaagtctca
     1381 acgcagcgtt cacgcagatc gagggttggg atttcgagac ggactatggc tggcagatgt
     1441 cggatctggt cgagggctgg aaaggctcct ggactgcccg gttgctggca aactatcagc
     1501 cggtcaacga gagcatctcc ttgccgggcc agactccgct gacctgggcg gccgcgccca
     1561 agacccacgt tactgcgttt ctccactatg atctggacaa ttgggcgatc ggcgtggagg
     1621 atcattggat cagcggattc tccaagagaa caacttcact taatcaagtg tacaccgtcc
     1681 cgcacgtgca ttccgtcaac tatgtcgacc tgaatctgga gcggaacttc gacgtcgatg
     1741 gcggaaaata taccggctac ttcacggttc agaatctcac caatgcccaa tccgacgtct
     1801 atagtacttc tggctcggtg ggcctcactt atccgatccc gttcggccag gacttgatgg
     1861 gccggtactt caccataggt atccgtgcca gcttgtgagg gggcgtttgg ggaccggcct
     1921 gccccccggc ggtccggtcc atttaagggc cggccgtcac cccaggtgga gccggcccgt
     1981 tttttcgacg ccaaacactc gtctccttca ctcggtcccc gcgccgggcg gcgggcttgg
     2041 ggcaatggca gaaccggctg tcgtgtgata tgggcggagg ttacgaaacg aggatatgtg
     2101 gtgacctttt atgaatgaga cagtcgatat ttcgccgcag cagttggacc gtgcggcttt
     2161 gggtgcggtg cgccatgagg tggccccggc cgtgggggac gaggtgctgg aaaagttgcg
     2221 ccatgtcagc accgccaccc tggccaccgc cctgttcaag cgcggcctgc gcaaccagat
     2281 gatccaggcg gttcagccgc tggctcctct ggcgacgaac atggtgggta tcgccttcac
     2341 gctgcgctac atccctgcgc gcgaggacct caatcccatc tcggtattcg acgatgccga
     2401 gcatccccag cgcaaggcca tcgaatcctg tccgcccggc gcggtgctgg tcatcgacag
     2461 ccggggcaat gcgcgcgccg cctccgccgg ctccattctg gtcaggcggc tgatgatgcg
     2521 cggctgcgcc ggggtggtca ccgatggcgg cctgcgcgac agcgccgaaa tcgcggcatt
     2581 ggagattcct gccttccata gtcggccctc ggcgcccacc aatctgacgc tgcaccaagc
     2641 catcgatatc aatgtgccga tcggttgcgg cgatgcgccg gttttcccgg gtgatgtgat
     2701 cgtgggcgat gccgatggcg cgatcgtcat tcccgccgcc atggccggcg acatagccga
     2761 ggaggcgacc cggatgaccg tttacgagga tttcgtcgtc gatatggtgg ctgccggcca
     2821 ctccatcgtc gggctttacc ctatgaccga tccggcaata cggaccaggt ttgaggtttg
     2881 gcgtaaggaa aaaggtcgct aacccgctgc cgcagcggtt gccgcagcgc gatgggcggc
     2941 ccggcatttg cgcggcgccg tcggcacgca ggacagaata gacgaactgg cgcaacaaga
     3001 cgctggtggc cagacaaagg gaggttggga tgaagcacaa gagtcatggc gcatcgcgcc
     3061 gggcattcct gcgtagcggt ggcgcgctgg ctggcgccgg tgtcgcagcc ctgagcagca
     3121 ccaggttggc gaacgccgcc gaaagcacac gcaccacgat caaggacatc cagaccatga
     3181 ccctgggtgg ggcacgcact tatgtttttg tgcgggtgat caccagcgac ggccgctatg
     3241 gcattggcga ggcctatggc acacctagca tcggcggggc cgaacagatc ctctcgctca
     3301 agccccagct ggtgggcaag aatccgctgg aaatcgacaa gctctatacc tttctgggcg
     3361 agggcgcgcc gagcctggcg ggcacccgga ctgacgggtc ggcgcacaat ctgatgcgcg
     3421 ccgccagcgg catagagatg gcgctttggg atctggcggg ccgaattctg gatacgccca
     3481 cctcggtgct gttgggcggc cagttccgcg accgggtgcg ggtttacgac cattccgctc
     3541 cgcgcgacat gttcgacaaa gcgtcgtgcc gggaatgggc tgacaaggta cgcgcccatc
     3601 ccagcggctt caccgcccac aaggtggaca ttccgcgcac cgtcagcatc tggtcgaaca
     3661 gcaagcggcc taatgctgta cctgatttcg cccatgatcc gtccaatcgc cagcttacca
     3721 ccaaggaact ggtgcgcatc gcccagggct acgagaatat gcgcgaggcg atcggctggg
     3781 accatgacct tatggtgcat tgtcattggg agctcgacct caacagcgcg ctggaattgg
     3841 cccgcgcggt ggcgcccatc aagccgctgt ggctggaaga cccgctccag gtgccctata
     3901 ccgattcctg gaagcggctg accgaggaat cgcctgtccc cattctcacc ggcgaaaatc
     3961 tggagcgcat cgatggcttc gtcccctttc tggtgaacca aggctgccac atcgccaatc
     4021 cggatctgcg caacagcggc ggattccttg aatccaagcg catcgccgat ttcgcttcgg
     4081 tgttcggcat tcccatgacg gtgcacaata ccggcagcca gctttacacc tatcaggcct
     4141 gccagtgggc cgcctccatc cgcgatttca tggcgtgcga aaccatcacg ggcgagggcg
     4201 gttggatgga tcaggtgctg aagctggacg gtccttatat cgaaaagggc actgtcaaag
     4261 tcagcgaccg gcccggtacc ggcgcggagc tgaaccgcga gatggtcagt gcgcatctgg
     4321 tccccggcga gaaatggtgg ggtgatctat aaccaacatc ccggtgctgc catggaaagg
     4381 atgaacatga accgcaagag cgcacatgtg cgccgacgcc aatggctttc cgtcgggcta
     4441 ctgacagcgg tcggcattct tttcatgc
//
LOCUS       DATMDK010000063         5041 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_497294,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000063 DATMDK010000000
VERSION     DATMDK010000063.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 5041)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5041)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5041
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_497294"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..364
                     /locus_tag="VNN98_01190"
     CDS             <1..364
                     /locus_tag="VNN98_01190"
                     /inference="COORDINATES: protein motif:HMM:NF014144.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009288 - bacterial-type flagellum
                     [Evidence IEA];
                     GO_process: GO:0071973 - bacterial-type
                     flagellum-dependent cell motility [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="flagellar FliJ family protein"
                     /protein_id="HWM60730.1"
                     /translation="ASIDAMKADLERKLADLDDNVAREKQRAGDSDIGRLAFPSFLRS
                     IEARRENLRITLKEIEREHAVAQLDLSNAFQDLKSLEVATEQQAKRLAEMQARRAQAR
                     LDEMALVRHLRKHTLRSA"
     gene            complement(602..814)
                     /locus_tag="VNN98_01195"
     CDS             complement(602..814)
                     /locus_tag="VNN98_01195"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM60731.1"
                     /translation="MSARPAEKEFAISAYADVRHEQLCFERQQSLAMRNMEWEGRVRP
                     LLSWSTLIMRGLGVAVFASAMLAILI"
     gene            1031..1462
                     /locus_tag="VNN98_01200"
     CDS             1031..1462
                     /locus_tag="VNN98_01200"
                     /inference="COORDINATES: protein motif:HMM:NF019301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DoxX family protein"
                     /protein_id="HWM60732.1"
                     /translation="MSFSETISPFFGRCAFVWFYLAGAMDILGNWHGIAADMAVKHVP
                     IPPLVLLVVLLLIFMGCLSLLFGYHTRHGAVMLFGLTMAAAFVMHDFWHYSDAGGRAA
                     QFQIFIRDFAICGGLLLMVGMGPGPFAIDNRGKGGGGGKRR"
     gene            complement(1620..2330)
                     /locus_tag="VNN98_01205"
     CDS             complement(1620..2330)
                     /locus_tag="VNN98_01205"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM60733.1"
                     /translation="MALPLFTDNLVAFPRADLRASLGAAMKRHRLPENLAQALVREAA
                     NFPEVSVDAALAFALAQRMAPAPIDFEKARGVLLVGPSGAGKSAVAAKILHAAALTGR
                     KTELARADGGLALFRTGTNPPELLTVMEADGFNPLNARAASAFSALGDIEGVETIGVI
                     SALNDAEDVSDIISSFRFRRVIITNMDRTRRLGAALTACMSGARLAHVTHGPRPEDGL
                     EMLEPGALAALLLDISSN"
     gene            complement(2346..4448)
                     /gene="flhA"
                     /locus_tag="VNN98_01210"
     CDS             complement(2346..4448)
                     /gene="flhA"
                     /locus_tag="VNN98_01210"
                     /inference="COORDINATES: protein motif:HMM:TIGR01398.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009288 - bacterial-type flagellum
                     [Evidence IEA];
                     GO_process: GO:0001539 - cilium or flagellum-dependent
                     cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FlhA"
                     /protein_id="HWM60734.1"
                     /translation="MSNIGTTASTGFDFSPARLGAFIRKSDLGLAIGIMAILVVLILP
                     LPTWLLDVSLAFSLSFSILILMTAVFIRKPLEFSSFPTILLITTMMRLALNLASTRLI
                     LGHGNEGTAASGYVIQAFGKLIMQGNFVIGLIVFAILVIVNFVVITKGSGRIAEVAAR
                     FSLDAMPGKQMAIDADLSAGLIDEKEAKMRRKTIEAESNFFGAMDGASKFVRGDAIAG
                     LLIVAINIVGGIIIGVAQKGMSFVDASQTFTLLTVGDGLVSQMPALIVSTAAGLMVSK
                     AGVEGATDKALMSQLSFYPQALGMAAAVMGIVAVLPGMPTFAFGGLALGTGSLAWYAF
                     KRKDARAAQIAADVAHAEGPPKEEPISTALALDLLRIELGYGLLPLINDVQGHRITDQ
                     IKALRRQLAQEMGFVMPAVRILDNMQLGANEYRIRIKEFDSAKGELFPGSFLIMDPKG
                     LPIDLPGTHTTEPAFGLPATWVSGSLKEEASFRGFTVVDPGTVLTTHLTEVLKNHMAE
                     LLSYAETKKLLDDMPPENKKLVEELIPSQISVTGVQRVLQTLLGERVSIRDLPAILEG
                     IAEAVGHTKNALYITEHVRARLARQLCHANLSPSGYLPLIALSPNWEQAFAESIVGQG
                     EERQLAMAPSQLQQFIQQVREAFDEASGKNEVPVLLTSPQIRPFVRSIVERFRPQTVV
                     MSQNEIHASVRLRTLGQV"
     gene            complement(4469..>5041)
                     /locus_tag="VNN98_01215"
     CDS             complement(4469..>5041)
                     /locus_tag="VNN98_01215"
                     /inference="COORDINATES: protein motif:HMM:NF014950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HWM60735.1"
                     /translation="SFREDLLYRLNVVNLRIPPLRERPKDIRALAHHFARKYAEANGV
                     AYRAVSSQTERLLLGHIWKGNVRELENTLHRAVLLASGTEIGPEAIRLPDGTQVGAAP
                     MPQNPSVHSAVVSAAAVTRGLVGRTVSDVERDLILDTLDHCLGNRTHAANILGISIRT
                     LRNKLREYSDSGLSIPSHGEQRPYDQKMAG"
BASE COUNT          966 a         1506 c         1634 g          935 t
ORIGIN      
        1 tgcctcgatc gatgccatga aggccgatct ggagcgcaag ctggccgatc tggacgacaa
       61 tgtggcacgc gaaaaacagc gcgccggcga ttccgatatc ggccgcctgg cctttccgtc
      121 tttcctgcgg tccatcgaag cgcggcgcga aaacctgcgc atcacgctga aggaaatcga
      181 gcgcgagcat gctgtcgccc aactcgacct gtcgaacgca tttcaggatc tcaagtcgct
      241 ggaagttgcc accgagcagc aggccaagcg cctggccgaa atgcaggccc gccgcgccca
      301 ggcccgtctg gacgagatgg cgctggtacg tcacctgcgc aaacacaccc tacgcagcgc
      361 ctaaggcgcg gtctttttgc ccgctgagtg cgtcgcgcgt gctgtgaacc acgtcacgcg
      421 aagcgtgtga gcaggtccag tggacctgcg aaagtggcga acgccgcgag cttaggcgag
      481 cggccgtgga aattgctccg cgcgttgcct acgctgtcgc taggcaaccc ttctcaggcc
      541 ccaaaatcct gcgcgccgat acggagcttg ggatttagtt tcagatcaaa aggatttagt
      601 ttcagatcaa aatcgccagc atggctgagg cgaagaccgc cacacccaag ccgcgcatga
      661 tcagcgtgct ccaggacagc aggggccgga cccgcccctc ccattccatg ttgcgcatcg
      721 ccaaggattg ctggcgctcg aagcataatt gttcatgccg gacatcggca taagcggaaa
      781 ttgcaaattc cttttccgca ggtcgcgcgg acattccaat cgcagacatc tttcagaccc
      841 tcaaataagg tcccttcgct gtgcgtaacg cggcagccga tttgggcgtt ccatggtttg
      901 cgccttcgag gccgctgctg tggcaaaaaa gccgcgaaat cgccgagttc accctgattc
      961 tgcctttctg ttgaactgca gggcggctgg cctatgcttt gcggcaagtg agtcgggggc
     1021 tcatcacgcc atgtcatttt cggaaacaat ttcgcccttc ttcgggcgtt gcgcctttgt
     1081 ctggttctat ctcgccggcg cgatggacat attgggcaac tggcacggca tcgccgccga
     1141 catggcggtc aagcatgtac cgatcccgcc gctggtgctg ctggtggtgc tgctgctgat
     1201 cttcatgggc tgcctttcgc tgctattcgg ctatcacacc cgccacggcg cggtgatgct
     1261 gttcggcctg accatggccg cggccttcgt gatgcatgat ttctggcatt acagcgatgc
     1321 cggcgggcgc gccgcgcaat tccagatttt catccgcgat tttgcgatct gcggcggcct
     1381 gttgctgatg gtgggaatgg ggcctggacc cttcgccatc gacaatcgcg gcaaaggcgg
     1441 cggtggcggc aaaaggcgct agagtcgttt cgggttggag tgaatcacgt caaaaccccg
     1501 tcatcgcccg cttcatgcgg gcgatccaat ttgtttcggc gagaaaaatg gatcacccgg
     1561 acccttcgca aaagctcagg gccaggtgat gacggaatta ttttcaatcc gaaacggcgc
     1621 taattgctgg aaatatccag cagcagggcc gccagggcgc cgggttccag catctccagc
     1681 ccatcctcgg gccgcggccc atgggtgacg tgggccagcc gcgcccccga catacaggcc
     1741 gtcaaggcgg caccaagacg acgggtgcgg tccatattgg tgatgatgac gcggcggaag
     1801 cggaagcttg aaataatatc gctgacatcc tcggcatcat tcagggccga gatgacgccg
     1861 atggtttcca ccccctcgat gtcgcccagg gcgctgaagg cgctggcggc gcgggcgttc
     1921 aaagggttga aaccgtcggc ttccatcacc gtcagcaatt ccggcggatt ggtaccggtg
     1981 cggaacaggg ccagcccgcc atcggcgcgg gccagttcgg tcttgcgccc ggtcagggcg
     2041 gcggcgtgaa ggatcttggc tgcgacggcg ctcttgccgg cgccgctggg gccgaccaaa
     2101 agaacgccgc gcgccttttc gaaatcgatc ggggcgggcg ccatgcgctg agccagcgcg
     2161 aaggccagcg ccgcatcgac gctgacttcg gggaaattgg cggcctcgcg caccagcgcc
     2221 tgggccaggt tttcgggcag gcggtggcgt ttcattgccg cgcccagcga cgcacgcaga
     2281 tcggcgcgcg gaaaggcgac cagattgtcg gtgaataggg gcagcgccat ggctagacct
     2341 gacccctaaa cctggccaag cgtgcgcaac cgcaccgagg catggatttc gttctggctc
     2401 atcaccacgg tctgggggcg gaaacgctcg acgatggagc gcacaaaggg gcggatctgg
     2461 ggactggtca gcagcaccgg cacttcgttc ttgccgctgg cttcgtcaaa cgcctcgcgt
     2521 acctgctgga tgaactgctg cagctgcgac ggcgccatgg ccagctggcg ctcttcgcct
     2581 tgccccacga tggattcggc gaaggcttgc tcccagttgg gcgacagcgc gatcagcggc
     2641 aggtaaccgc tgggcgacag gttggcgtgg cacagctggc gggccaggcg ggcgcggaca
     2701 tgttcggtga tgtaaagcgc attcttggtg tggcccaccg cctcggcaat gccttccagg
     2761 atggcgggca gatcgcggat ggaaacgcgt tctcccagca gggtttgcag cacacgctgc
     2821 acgccggtga cggagatctg cgaggggatg agttcttcca ccagcttctt gttttccggc
     2881 ggcatatcgt ccagcagctt cttggtctcg gcataagaca gaagctcggc catatggttc
     2941 ttgagcactt cggtgaggtg cgtggtcaga acggtaccgg gatccaccac ggtgaagccg
     3001 cggaagctgg cttcttcctt caggctgccg gaaacccagg tggcgggcag gccgaaggcg
     3061 ggctcggtgg tgtgggtgcc gggcagatcg atcggcaggc ccttggggtc catgatcagg
     3121 aaactgccgg gaaacagttc gcccttggcg gaatcaaatt ccttgatgcg gatgcggtac
     3181 tcgttggcgc ccagctgcat attgtccaga attcgcacgg cgggcatgac aaagcccatc
     3241 tcctgcgcca gctggcggcg cagtgccttg atctggtcgg tgatgcggtg gccctgcaca
     3301 tcgttgatca gcggtaacaa gccataaccc agttcaatgc gcagcagatc cagcgccagg
     3361 gcggtggaga tcggttcttc cttgggcggg ccttcggcat gcgccacgtc ggcggcaatc
     3421 tgggcggcgc gggcgtcctt gcgcttgaag gcgtaccagg ccagcgaccc ggtacccagc
     3481 gccaggccac cgaacgcaaa ggtcggcatg ccgggcagaa ccgcgacaat acccatcacg
     3541 gcggcggcca tgcccagcgc ctggggatag aaggacagtt ggctcatcaa ggctttgtcg
     3601 gtggcgcctt cgacaccggc cttcgacacc atcaggcccg cagcggtgga gacgatcagg
     3661 gcgggcatct gcgacaccaa gccgtcaccc acggtcagca aggtgaaggt ctgcgaagcg
     3721 tcgacgaaac tcatgccctt ctgggccacg ccgataataa taccgcccac gatattgatg
     3781 gccacgatca acaggccggc aatggcgtcg ccacgcacga atttgctggc gccgtccatg
     3841 gcgccgaaga aattggattc cgcctcgatg gtcttgcggc gcatcttggc ttctttttcg
     3901 tcgatcaggc cggcggagag gtcggcgtcg atcgccatct gcttgccggg catggcatcc
     3961 aagctgaagc gcgccgccac ttcggcgatg cggcctgaac ccttggtgat gaccacgaaa
     4021 ttgacgatga ccaggatggc gaagacgatc aggccgatga cgaaattgcc ctgcatgatc
     4081 agcttgccga aagcctgaat gacatagccc gaggcggcgg tgccttcatt gccgtggccc
     4141 agaatgaggc gggtggaggc gaggttcagc gccagccgca tcatggtggt gatcaagagg
     4201 atggtgggga aggacgagaa ttccaaaggc ttgcggatga acaccgccgt catcaggatc
     4261 aggatcgaaa agctcagcga aaaggccagg ctcacgtcca gcagccaggt cggcagcggc
     4321 aggatcagca ccaccaggat ggccatgatg ccgatcgcca gccccagatc ggacttgcgg
     4381 atgaacgcgc cgagccgggc gggcgagaaa tcgaagcccg tggaagccgt ggtgccgatg
     4441 ttagacatct aaatcaacct gtgaaaaact agccggccat cttttgatca tacgggcgtt
     4501 gttcgccgtg gctgggaatg ctcagcccgg agtccgaata ttcgcgcagc ttgttgcgca
     4561 gggtgcggat cgagatgccc aggatattgg cggcatgggt gcggttgccc aggcaatggt
     4621 ccaaggtgtc caggatcagg tcgcgctcga catcgctgac ggtgcgccca accaacccgc
     4681 gggtgacagc ggcggccgag accacggcgc tgtggacgct ggggttctgc ggcatcggtg
     4741 cggcgccgac ctgtgtgccg tcgggcagac gaatggcttc cgggccgatt tccgttcccg
     4801 atgccagcag tacggcgcga tggagagtgt tttccaactc gcggacattg cccttccaga
     4861 tatgccccag cagcaagcgt tcggtctggg acgaaaccgc gcgataagcc acgccattgg
     4921 cttcggcata tttgcgcgcg aaatgatgcg ccagggcgcg gatgtccttg ggccgctcgc
     4981 gcagcggcgg gatgcgcagg ttcaccacgt tgagccgata gagaagatct tcacggaagg
     5041 a
//
LOCUS       DATMDK010000064         3202 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_498191,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000064 DATMDK010000000
VERSION     DATMDK010000064.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3202)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3202)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3202
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_498191"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            104..706
                     /locus_tag="VNN98_01220"
     CDS             104..706
                     /locus_tag="VNN98_01220"
                     /inference="COORDINATES: protein motif:HMM:NF044515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR family transcriptional regulator"
                     /protein_id="HWM60736.1"
                     /translation="MPAKTKASPARKGRVDAERNRQRLLEAAKAVFAEKAASAGLEEI
                     ARAAGVGIGTLYRHFSTRDALIEAVYRHEVEQLALAATRLSAEHSPITALREWLLVFV
                     DYLDAKYGMAAVLNLLVSGTSALYAESGAQMKQAIAKLTDAAVASGDIRMDMEPLDLL
                     RALAGVMNREPGPDSKRAARRLVDILVAGMRVRKRRIPIA"
     gene            complement(783..1199)
                     /locus_tag="VNN98_01225"
     CDS             complement(783..1199)
                     /locus_tag="VNN98_01225"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM60737.1"
                     /translation="MNTRVTPQHLVPGTVVTVQMKGLFKLAHHFALVSDKLGADGLPI
                     VIANAGETGGPGEQMWNDFVQGRSYRAFYPSNLPPRTVLYNAYSMFGTRYNFLHWNCE
                     HFANACHGRPAQSHQIRGGLALAAIMGGLALAAARA"
     gene            1625..2119
                     /locus_tag="VNN98_01230"
     CDS             1625..2119
                     /locus_tag="VNN98_01230"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM60738.1"
                     /translation="MIRRVCHQGLPSPFAAGGNSPSATPALNYPSAAAMDMAAITHSM
                     HGDAREYRGAVSRASQVTAPWAEPSHHGTAGTVSIASTGYIGVNRHASRLARAHLTEL
                     VMGHHVKIVCLSVGLLVALSGLFSVSFALALVKTTTVMAVTLQSAQSSVATGATFRAI
                     AIGY"
     gene            complement(2180..2461)
                     /locus_tag="VNN98_01235"
     CDS             complement(2180..2461)
                     /locus_tag="VNN98_01235"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM60739.1"
                     /translation="MVLKKLLSTAATLGTLAIGGLAISSLPAGAYIACNHDGDCWHTE
                     DRTHAPGIRFDYHPDDWYFHRDWNRDRDRHWRGYHEGRGYYRGGVWITL"
     gene            2697..>3202
                     /locus_tag="VNN98_01240"
     CDS             2697..>3202
                     /locus_tag="VNN98_01240"
                     /inference="COORDINATES: protein motif:HMM:NF013340.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbhB/YbcL family Raf kinase inhibitor-like
                     protein"
                     /protein_id="HWM60740.1"
                     /translation="MLRFRSLLIGALLLSAGPALAQAPAAPATPPPTPMGLTSSSFTD
                     GGIIPDKYTQAVPAPVSPQLSWTNAPAGTQSFALIMHDPDTAPGHNATDILHWMAFNI
                     PAAVSSLPEGVPTTPTLPDGTVQPNNFGKHPGFMGSGARGNVYHHYTWELYALDTKLT
                     LGPDATRE"
BASE COUNT          606 a         1021 c          989 g          586 t
ORIGIN      
        1 tcagccggcg cgccattgtc cgccggcctt gggtgacgta agaggagggt gcctccgttt
       61 acatatacgg aggcgccctc cgtatttcaa ggggtcactg cgcgtgcctg ctaaaaccaa
      121 agccagtcct gcccggaagg gacgtgtcga tgccgagcgc aatcgccagc gtctgctcga
      181 agcggccaag gccgtgttcg ctgaaaaggc ggcgagcgcc ggtctggagg agatcgcacg
      241 cgccgcgggc gttggtatcg ggacgcttta ccgccatttt tccacccggg atgccctgat
      301 cgaggcggtc taccgccatg aggtcgaaca actggccctg gccgccacgc ggctctcggc
      361 cgagcattca ccgatcaccg cgctgcgcga atggctgttg gtgtttgtgg attatctgga
      421 cgccaaatac ggaatggcgg cggtgctgaa tttgctcgtc agcgggacat cggcccttta
      481 tgccgaatcc ggcgcgcaga tgaagcaggc gattgcaaag ctgacggacg ccgctgttgc
      541 cagcggcgat atccgcatgg atatggaacc cctcgatctt ttgcgcgcgc tggctggtgt
      601 tatgaacaga gagcctgggc cggacagcaa acgggccgcc cggcgcctgg tggatatcct
      661 tgtcgccggg atgcgcgtgc ggaagcggcg aatcccgatt gcgtaacggc tgaggtcggc
      721 gatcttggcc gcggtcaatg gactttcgca gctactgccg ggccaaacca agagcgccgg
      781 cttcacgccc gcgcagcggc caaggcgaga ccgcccatga tggcggcaag cgccaggccg
      841 ccgcgaatct ggtggctctg ggccgggcgg ccgtgacagg cgttggcgaa atgctcgcaa
      901 ttccaatgca ggaaattgta gcgcgtgccg aacatggaat aggcgttgta cagcacggtc
      961 cggggcggca ggttgctggg atagaaggcg cggtacgacc ggccctgcac aaagtcgttc
     1021 cacatttgct cgcccggccc gcccgtctcg ccggcattgg cgatgacgat gggcaggcca
     1081 tcggcgccaa gcttgtcgct caccagggca aagtgatgcg cgagcttgaa caggcctttc
     1141 atctgcacgg tgacgaccgt gccgggaacc aggtgctgcg gcgtgacgcg ggtgttcata
     1201 gcaagccttg gacaaaagcg gcgcgctcca taccatcgcg tcacgcaaac gtcatctaga
     1261 atcttaaccc ctgactgtca caattgtcct ctggggcgcg gcatccatgc acaaaagcta
     1321 ggtagcctgc gcccgtgcct ggtcctgcgc tgccggaatc gcgaagcaga aaatcgtgcc
     1381 gccggacgcg cccggctccg tccatatccg gccgttatga tcggtgatga tccgatgaca
     1441 tatcggcaag cccacgccca ttccgttctt tttggtcgag gtgaagggct gaaacaagcg
     1501 cggccatgtc cgccgtcaag ccgggtccgg tatcatgcaa acgaaacaga acggtgtccc
     1561 ctgcgccccg cgcggcagaa agctcaagag tctgcatcga gctgcgaacg tcgctccagg
     1621 ggtcatgatc cgccgtgtct gccatcaagg gctccccagc ccatttgccg ccggtggcaa
     1681 cagtccttcg gcgactccag cgttaaacta tccctccgca gcagcgatgg atatggcggc
     1741 aattacccat tccatgcacg gggatgcgcg ggaatatcgt ggtgcggtaa gccgcgcctc
     1801 gcaggtgacg gcgccttggg cggaaccgtc ccatcatggc acggctggca cggttagcat
     1861 tgcaagcacc ggttacatcg gtgttaacag acacgcttct agattggcgc gcgcgcatct
     1921 gacggagctg gtaatgggtc atcacgtgaa aatcgtgtgc ttgagtgtgg gcctgctggt
     1981 ggccctatcg gggcttttca gcgtgtcgtt cgccctggcg ctggtgaaaa cgaccaccgt
     2041 catggccgtg acgctgcaat cagcacaaag cagtgtcgcg accggcgcga cattccgggc
     2101 catcgccatc ggctactgac gcgcgccaaa agacggcccg gtcaagggcc gtctttcgcg
     2161 caggcatcag tttggaaaat tacagcgtga tccagacgcc gccgcgatag tagccgcggc
     2221 cttcatgata tccgcgccaa tggcggtcac ggtcgcggtt ccagtcgcga tggaaatacc
     2281 aatcgtccgg atggtagtcg aaccgtatgc cgggcgcatg ggtgcggtct tcggtatgcc
     2341 agcaatcgcc gtcatggttg caggcgatat aggcgccggc ggggagcgag gaaatggcaa
     2401 gaccgccgat cgcaagcgtt cccagcgtgg cggcagtaga gagcagtttt ttcaaaacca
     2461 tgggtttctc cattgtctgc ccctggctta caaaacgctg cctgccgcct taggtgccgc
     2521 aagctccatt aaaagttcgg gcagttttgg gggaacctgc gggaacgggg acggtccggc
     2581 cgcacccgtt ttctcgcaaa tcagcccaaa gccccccaaa attccaagga acccgcgcta
     2641 gactcttttg ccaaaacagc ttctgctgcg cctccccaat aatagaggag gatcgcatgc
     2701 ttcgtttccg ctccctgctg atcggcgccc tgctgctgtc ggcgggcccc gctttggccc
     2761 aggcgcctgc cgccccggcg acaccgccgc ccacccccat gggcctgacc agttcatcct
     2821 tcaccgacgg cggcatcatt cccgacaaat acacccaggc cgtcccggcg ccggtctcgc
     2881 cgcagctgtc ctggaccaac gccccggccg gcacgcagag cttcgccctg atcatgcacg
     2941 atcccgatac cgcgccgggt cacaacgcca ccgacatcct gcactggatg gcattcaaca
     3001 ttcccgccgc cgtctcgtcg ctgcccgaag gcgtgcccac cacgccgacc ctgccggacg
     3061 gcaccgtgca gcccaacaat ttcggcaagc atcccggctt catgggctcg ggcgcgcgcg
     3121 gcaatgtcta tcatcactac acgtgggaac tgtatgcgct ggacaccaaa ctgaccttgg
     3181 ggcccgacgc tacacgtgag ca
//
LOCUS       DATMDK010000065         6118 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2548482,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000065 DATMDK010000000
VERSION     DATMDK010000065.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 6118)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6118)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6118
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2548482"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..357
                     /locus_tag="VNN98_01245"
     CDS             <1..357
                     /locus_tag="VNN98_01245"
                     /inference="COORDINATES: protein motif:HMM:NF019843.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM60741.1"
                     /translation="AMHNLAVFYAGAAAGKKNMPEAARWFARAAALGLSDSQFNLAVL
                     YERGDGVPQSLLDAYKWYSIAAAAGDAESKARIGVLQTQLGDADKAAANKSAATFHAA
                     PLNRSANVPPEPADIG"
     gene            461..1378
                     /locus_tag="VNN98_01250"
     CDS             461..1378
                     /locus_tag="VNN98_01250"
                     /inference="COORDINATES: protein motif:HMM:NF014035.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HWM60742.1"
                     /translation="MEIYLPVAEMSVNWLLVVALGTLVGFLSGMFGVGGGFLMTPLLV
                     FTGIPSTVAVATTLSHVTASSMSGALAQWRKRAIDFTMAGVMLAGGVVGTLFGVWLFA
                     LMRRQGQMDLIVSLSYVVMLGSIGIIMLRESLTTLQAARSGVSVSRRLVNRGWIQALP
                     FKMRFRQSRLYISVIPPIAIGFAVGALSAIMGIGGGFIIVPAMIYILRMPTNVVMGTS
                     LTQIIAVTAITTVLQATSNYAVDIVLAGLLVAGGVVGAQLGVRAGARLRGEQLRLLLA
                     LLVLAVGAGLAWQLVAHPADVYSLSEGAP"
     gene            1375..2151
                     /locus_tag="VNN98_01255"
     CDS             1375..2151
                     /locus_tag="VNN98_01255"
                     /inference="COORDINATES: protein motif:HMM:NF021148.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR02186 family protein"
                     /protein_id="HWM60743.1"
                     /translation="MKRTLLALLLLLTAFVLLPSPIGAGGAARAEDLVSGISQDIIQI
                     TSNYTGTNIVVFGAVEREPNTQSRDIVVVVRGPDEPMTVRRRDRIAGVWVNHDAARFE
                     GLPAYYYLASTQPIARIAPREALDRYGIGLQSLRPTVIGSHHDPEPFRQAAIRYHQRV
                     GLYAASPGSIDFLSETLFRTRVPVPAGVMRGQYNVEVYLFRDGQVVSAQSTPLFVDAT
                     GLERRLYNMAHDAPLSYGLACVFMAMLLGWISSVLFRRPA"
     gene            2300..2500
                     /locus_tag="VNN98_01260"
                     /pseudo
     CDS             2300..2500
                     /locus_tag="VNN98_01260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015478234.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_component: GO:0005829 - cytosol [Evidence IEA];
                     GO_function: GO:0001072 - transcription antitermination
                     factor activity, RNA binding [Evidence IEA];
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="cold-shock protein"
     gene            2657..3202
                     /locus_tag="VNN98_01265"
     CDS             2657..3202
                     /locus_tag="VNN98_01265"
                     /inference="COORDINATES: protein motif:HMM:NF015893.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ArsC/Spx/MgsR family protein"
                     /protein_id="HWM60744.1"
                     /translation="MDYIASPPTKDALKNLSLLLRESNQSLVRKYEPLFLELRLDDRF
                     ISDGEYWEAIFEHPSLINGPVVAMAAKAGICHSKSAVKSFLSAAEGTQPVSKPKGLPP
                     SLLRLVDGAPAMPPAAAEIATVSPQPKAKAAAVKPVRVAAQSKTAVKPKAKPKSTVKA
                     KTPTKKPVRTPAKKPVRKVKK"
     gene            3231..3788
                     /locus_tag="VNN98_01270"
     CDS             3231..3788
                     /locus_tag="VNN98_01270"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM60745.1"
                     /translation="MNAKRTLLVFAAMALIPGPAWADTSALERLKADLLGNLSATQVL
                     TKWCGDLRLASPAVIRAERDAASVKAPTPEVMALLAARPDETIRYRHVRLMCGTHLLS
                     EADNWYRPSQLTPEMNAELDTTDTPFGTAVRPLGFHRKTLGANATADQRTPLQVKALL
                     LTQAEIPFSLVVENYSRDLIAGAPP"
     gene            complement(3804..4703)
                     /locus_tag="VNN98_01275"
     CDS             complement(3804..4703)
                     /locus_tag="VNN98_01275"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM60746.1"
                     /translation="MPRKIRILIGALLASCHTAFAQTPPSEPAAKTTESVTVTAAGSS
                     REQIEKFVQQYAAASSRIDRLARWENVICPVTLGLPADQNQAVSARIREVAAMVGAGK
                     SPKGKCSPRIIVIFTAQPQDLMDAIKRDYPKLLGRHYYSQTERLSRMAHPAQAWYGTA
                     TQDTSGYVHADTDGHGEPAEGQTFSSTGLMAFEGLSSQFQSILIVVDLNDAAGHQLAA
                     LSDYVAMLALSQTQASDTCQPLSSITNLLSKNCKPSNKSDSITDMDIAYLKALYSTSP
                     TSSLHSQRSQISAKVEQTLGKKQ"
     gene            complement(4713..5399)
                     /gene="pdeM"
                     /locus_tag="VNN98_01280"
     CDS             complement(4713..5399)
                     /gene="pdeM"
                     /locus_tag="VNN98_01280"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR04123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ligase-associated DNA damage response
                     endonuclease PdeM"
                     /protein_id="HWM60747.1"
                     /translation="MLTKTGDLLITVNGETLLLDSCGAAFSPAHNTLIFADLHFEKGS
                     SYARGRQFLPPYDTANTLRRMARAIARHNPARVIALGDSFHDSGAADRLGPEERGLLE
                     SLSLTAGFTWIAGNHDPHPPAWLGGEVAASVRVGGLTFRHEPLAAFEPGEVAGHLHPC
                     ASVTKWGRSVRRRCFVSDGLRLMLPSFGAYTGGLDVGEAAIASLFAGPFHAYMLGHSR
                     VYAIPRQVAV"
     gene            complement(5389..>6118)
                     /locus_tag="VNN98_01285"
     CDS             complement(5389..>6118)
                     /locus_tag="VNN98_01285"
                     /inference="COORDINATES: protein motif:HMM:NF020083.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM60748.1"
                     /translation="ESWHVLPEPVQEWLKIQEWRSVIPKPGQLLVETFPRGNRQYLVC
                     YPFEGRLAHQTLGMLLTRRLERGRYHPLGFSANEYALAVWAARDMGDADMNALFDEDM
                     LGDDLDSWLAESNLYKRTFRNCAIIAGLIQRRFPGKEKSSRQVTFSSDLIYDVLREHE
                     PDHVLLRATYQDAGTGLLDIARLGDMLARVRRRIVTRRLDRVSPLAVPALLEISREMV
                     AGEADEAILRESEDALIRDAMRVD"
BASE COUNT         1176 a         1921 c         1843 g         1178 t
ORIGIN      
        1 gcgatgcaca acctggcggt gttctatgcc ggcgccgccg cgggcaagaa gaacatgccg
       61 gaggcggcgc gttggttcgc gcgagccgca gcgctgggcc tgtcggactc ccagttcaat
      121 ctcgcggtgc tgtatgagcg cggcgacggc gtgccgcaaa gcctgctcga cgcttacaaa
      181 tggtattcca tcgccgccgc cgccggcgat gcggaatcca aagcccgcat cggcgtgctg
      241 cagacccagt tgggcgatgc cgacaaggcg gcggccaaca agtcggccgc caccttccat
      301 gccgcaccgc tcaaccgctc ggccaatgtc ccgcccgagc cagccgatat tggttgatcc
      361 tcggggctga tttttcgctg attccgtaag gttttttgcg ttgacccact gcgctcacac
      421 gcgcatggtc gcaagcagtg ccgcgctgcc aggctgcctg atggaaatct atcttcccgt
      481 tgccgagatg tcagtcaact ggctgcttgt cgtcgcactg ggcacgcttg tgggctttct
      541 gtcaggcatg ttcggggtag gtggcggctt tctgatgacg ccgctgctgg tgttcaccgg
      601 catcccctcc accgtggcgg tggccacaac tttgtcccat gtcaccgctt cctccatgtc
      661 gggggcgctg gcacaatggc gcaagcgcgc catcgatttc accatggcgg gggtgatgct
      721 ggcgggcggc gtggtcggca cgctgttcgg cgtctggctg ttcgcgctga tgcgccgcca
      781 gggccagatg gacctgatcg tgtcgctgag ctatgtggtg atgctgggca gcatcggcat
      841 catcatgctg cgcgagagcc tgaccacact ccaggccgca cgcagcggcg tgagcgtcag
      901 ccgtcgcctg gtcaatcgcg gctggatcca ggccttgccc ttcaagatgc gcttccgcca
      961 gtcgcgcctg tacatcagcg tgattccgcc catcgccatc ggtttcgcgg tgggcgcgct
     1021 tagcgccatc atgggtatcg gcggcggctt catcatcgtt ccggccatga tctatatcct
     1081 gcgcatgccg accaatgtgg tgatgggcac ctcgttgacg cagatcatcg ccgtcaccgc
     1141 catcaccacc gtgctgcagg cgaccagcaa ttacgccgtg gacatcgtgc tggccggact
     1201 gttggtggcg ggcggcgtgg tgggcgcgca attgggcgtg cgggctggag ccaggctgcg
     1261 cggcgagcag ctgcgcctgc tgctggcgct gctggtgctg gcggtgggcg cgggcctggc
     1321 ctggcagttg gtggcccatc cggccgatgt ctattccctg tccgaaggcg cgccatgaag
     1381 cggacgctgc tggccttgct tttgctattg acggcttttg tccttttgcc ctcgcctatc
     1441 ggcgcgggcg gggcggcccg cgccgaagat ctggtatcgg gcatcagcca ggacatcatc
     1501 cagatcacct ccaactatac cggcaccaac atcgtggtgt tcggcgcggt cgagcgcgag
     1561 cccaacaccc agagccgcga tattgtggtg gtggtcagag gtcccgacga gcccatgacg
     1621 gtgcgccgcc gcgaccggat cgcgggggta tgggtcaatc acgacgccgc caggttcgaa
     1681 ggcctgcccg cttattatta tctcgcctcg acccagccga tcgcgcgcat cgcgccgcgc
     1741 gaggcgctgg accgttacgg catcggcctg cagtcgctga gaccgacggt gatcggcagc
     1801 caccacgatc ccgagccgtt ccgccaggcg gccatccgtt accaccagcg ggtgggcctg
     1861 tatgccgcaa gccccggcag catcgacttt ctcagcgaaa ccctgtttcg tacccgggtg
     1921 ccggtgccag cgggcgtgat gcgcggccag tataatgtcg aggtctatct gttccgcgac
     1981 ggccaggtgg tcagcgccca gtccacacct ttgttcgtgg acgccaccgg tctggaacgg
     2041 cggttgtaca acatggcgca tgatgcgccg ctgagctatg gcctggcctg tgtcttcatg
     2101 gccatgctgt tgggctggat ttcgtcggtg ctgttcagac ggccggcctg atcggtatac
     2161 gcttgtaata atgcaatttc gataaactac attattgctg caggacggca gtaggcaaat
     2221 ccggaaaagt ccgatattca actatcgcag ccgtttcgcc actggaactg tcttgcgacc
     2281 aacttaaatc aggaaaatta tgcagaccgg taccgtcaag ttctttaatg ccgtgaaggg
     2341 ctttggattt atcaccccag acgaaaacac caaggatgtg ttcgttccca ccacttcgct
     2401 gacagccgcc ggcttcacca gtttgaaagc cggccagcgt gtttcattca aggcgatgcc
     2461 ggatacgaag gggcccaaag ccatcgatct gaaaatcatt gcgcctgcgg agataccaag
     2521 ggcgccaaag ccagatccgg cgccgcccgc aacgcgcgaa gagccacaca ggctgaccgt
     2581 ttattgtgac ccggattccg ccacggccga ggaagtgctc gctgaactgc gccatgccgg
     2641 gcacgaacca gctgtcgtgg attatatcgc gagcccgcca accaaggacg cgctcaaaaa
     2701 tctctccttg ctgttgcggg aaagcaacca aagcctggtg agaaaatatg agcccttgtt
     2761 cctggagctt cgcctcgacg atagattcat cagcgacggc gaatattggg aagcgatttt
     2821 tgaacatcct tccttgatca atgggcccgt cgtggcgatg gcggccaaag caggcatttg
     2881 ccactccaag agcgcggtta aatccttcct gtcagcggca gagggaacgc agccggtttc
     2941 aaaaccaaaa ggcctgccgc cgagcctgct gcggttggtc gatggcgccc ccgcgatgcc
     3001 gccagccgct gcggaaattg ccaccgtgag cccgcaaccg aaagccaaag ccgccgcggt
     3061 gaaacccgtt cgggttgccg cgcaatcaaa gaccgcggtc aagcccaagg ccaaacccaa
     3121 aagcacggtg aaagccaaga cgccgacgaa gaaacccgtt cggacgcccg ccaaaaagcc
     3181 ggtgcgtaag gtcaagaagt aactgccgcg cggtcaagct ggataatccg atgaacgcca
     3241 aacgcacatt gctggtcttc gccgcgatgg ccttgattcc gggcccggcc tgggccgaca
     3301 catcggcact tgagcgcctc aaagcagact tgctgggcaa tctgagcgcc acccaggtcc
     3361 tgaccaaatg gtgcggcgat ctgcggctgg catccccggc cgtcattcgc gcagagcgcg
     3421 atgcagcctc ggtcaaagca ccgacgcccg aggtgatggc cttgctggcg gccaggccgg
     3481 atgagaccat tcgctaccgg catgtgcgct tgatgtgcgg gacgcacctt ctgtccgaag
     3541 ccgacaactg gtaccggccc tcccaactca cgccggaaat gaatgcagaa ctcgacacca
     3601 cggacacgcc gttcggtacc gccgtgcggc cgctgggatt tcatcgcaaa accctgggcg
     3661 cgaatgccac tgccgaccag cgcacacccc ttcaggtcaa agcgctgctt ctgacgcagg
     3721 cggagatacc gttcagcctg gtggttgaga attatagtcg cgacctcatc gcaggcgcgc
     3781 cgccgtaagg cgatgctgcc ggactattgt ttcttgccca gagtctgctc aacttttgca
     3841 gatatctgac ttctctgact gtgaagggac gatgtgggcg aggttgaata caacgccttg
     3901 aggtaggcaa tatccatgtc ggtaatcgaa tcgctcttat tggatggttt gcaattcttg
     3961 gacaacaggt tggtgatgct ggacagcggt tggcatgtat cagatgcttg cgtctgtgat
     4021 agtgccagca ttgcgacata atccgacaaa gcggccaact ggtgccccgc ggcatcgtta
     4081 agatcaacca caataagaat ggattgaaat tggctgctca atccctcgaa tgccatcaag
     4141 ccggttgaag aaaaagtctg tccttctgcc ggctcaccat gtccatccgt atcggcatgc
     4201 acatagccgc tcgtatcttg ggtggccgtg ccataccaag cctgggcagg atgtgccatg
     4261 cgcgacaggc gctccgtttg tgaataatag tggcgcccaa gcaatttggg gtagtcgcgc
     4321 ttaattgcgt ccattaagtc ctgcggctgc gccgtgaaga tcacgattat ccggggactg
     4381 cacttcccct tcggggactt acccgctcca accatagccg caacctcccg aattcgagcg
     4441 ctgacagctt gattttggtc cgcaggcagc cccagggtca caggacagat gacattttcc
     4501 catcgcgcca atctgtcaat tctggaagat gcagcggcgt attgctgaac aaatttttca
     4561 atctgctctc ttgaagaacc cgcagccgtg acagtcacgc tctctgtggt tttcgcggcg
     4621 ggctcagacg gtggagtttg ggcaaacgcc gtatgacagg aggcgagcag cgcgccaatg
     4681 agaattctga ttttcctggg catcctcaag gatcagaccg ccacctgtct gggtatcgca
     4741 tacacccggc tatgccccag catataggcg tggaacgggc ccgcgaacag cgaggcgatg
     4801 gccgcctcgc ccacatccag cccgccggta taggcgccga aggacggcag catcaatctg
     4861 agaccgtccg acacaaagca gcggcggcgc acgctgcggc cccatttggt cacgctggcg
     4921 caagggtgca gatgccccgc cacctcgccg ggctcgaaag ccgccaaggg ctcgtgccgg
     4981 aaggtcaacc cgccgacccg cacactcgcg gccacctcgc cgcccagcca ggcgggggga
     5041 tgaggatcgt ggttgccggc gatccaggtg aagcccgccg tcaggctcag cgattccagc
     5101 aagccgcgtt cttccgggcc caagcggtcg gcggcgcccg aatcgtgaaa cgaatcgccc
     5161 agcgcgatca cccgcgccgg attgtgccgc gcgatcgccc gcgccatgcg ccgcaaggtg
     5221 ttggcggtat catagggcgg caggaactgg cggcccctcg cataggaact gcccttttcg
     5281 aaatgcaggt ccgcgaaaat cagggtgttg tgagccggac tgaaggccgc gccgcaggaa
     5341 tccagcagca gggtctcgcc attcaccgtg atcagcaaat cgcccgtctt agtcaacacg
     5401 catcgcatcc cgtatcagcg cgtcttcgct ttcgcgcaga atagcctcgt ccgcctcgcc
     5461 cgcaaccatt tcgcgggaaa tctccagcag cgccggcacc gccaggggtg agaccctgtc
     5521 cagccggcgc gtcacaatcc gcctcctgac ccgggccagc atatcgccca gccgggcgat
     5581 gtccaaaagc ccggttcccg cgtcctgata ggtagcgcgg agcagcacat ggtcgggctc
     5641 atgttccctg agaacatcgt aaataaggtc tgaagaaaaa gtcacctgcc ggctgctttt
     5701 ctctttgcct ggaaagcggc gctggatcag ccccgcgatg atggcgcagt tacggaaggt
     5761 gcgcttgtaa agattggatt cggccagcca gctgtccaga tcgtcgccca gcatgtcttc
     5821 atcaaacagt gcgttcatgt cggcgtcacc catatcgcgc gccgcccaga ccgccagggc
     5881 atattcattg gcgctgaagc ccagcggatg gtagcggccg cgctccagcc gccgggtcag
     5941 caacatgccc agggtctgat gcgccagccg cccctcaaaa ggatagcaga ccagatactg
     6001 gcgattgccg cgcggaaagg tctcgaccag aagctggccg ggcttgggga tcacgctgcg
     6061 ccattcctgg atcttgagcc attcctgcac cggctccggc agcacatgcc agctttcc
//
LOCUS       DATMDK010000066         2029 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2779430,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000066 DATMDK010000000
VERSION     DATMDK010000066.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2029)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2029)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2029
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2779430"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            178..1530
                     /locus_tag="VNN98_01290"
     CDS             178..1530
                     /locus_tag="VNN98_01290"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HWM60749.1"
                     /translation="MALDALRGWTRQQYNVVAASYLGWTLDAFDFFVLTFVMPDITKQ
                     FDVKIPAVALAVTLTLAVRPLGAFLFGRLADDYGRRPILILNIILYSLFGFATAFAPS
                     LSMFLVIRAFFGVAMGGIWGIGASLAMETVKPKARGFVSGLLQSGYPSGYLAASLVFG
                     LLYVSVGWRGMFMIGLIPGLLLAIYIYMAVPESPAFLRPAGAKPSRHLIHLVGVLAVL
                     AVMLLVLERFGREVGLLYLVAGAVPLLIVAAVLTPFIRQHWKLALYAIILMTGFNFFS
                     HGTQDLYPTFLREQHHFGPGTVSLITVVLNVGAIVGGLFFASLSQSLGRRQTVVIAAL
                     LALPVIYFWAYAATAVTLALGAFLMQICVQGAWGVVPVHLNELSPPGVRGTFAGTVYQ
                     LGNLIASVNAVFQAKFAESQGGNYSIALAVVACFAALLIATMMYFGPEARDVDMTRSQ
                     "
     gene            1549..>2029
                     /locus_tag="VNN98_01295"
     CDS             1549..>2029
                     /locus_tag="VNN98_01295"
                     /inference="COORDINATES: protein motif:HMM:NF024921.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HWM60750.1"
                     /translation="MRKFLAVAVLAMMTTPAVAQSGVTLKIITPAVTANAGLRDLAAG
                     FEKEMGIKVEIQTLNMAKMVDELKGGTPPADIVFLPYALMDQAQTDKTVTGGSRINIG
                     RVRIGLAVHKGDPTPDISTIDKLAAVLKAADSVMYSNPASGSMEAKIIDGMLNAHPEF
                     "
BASE COUNT          329 a          628 c          627 g          445 t
ORIGIN      
        1 gctttcccga actcaacagt cccagcggcg gatacgtctt caagatcgac ctgatctgac
       61 tcgatgttgc agcgcggcgc atttgtgcag gtgatttcgc tgtccgcctc gcgggcaggg
      121 gttgcgggag tgctttgcgc acccccatac tcgccgcgat aattcacggg gcggtttatg
      181 gcgttggatg cactcagggg atggacgcgg caacaatata acgttgtcgc cgcctcctat
      241 ctgggctgga cgctggatgc gttcgatttc ttcgttctca ccttcgtcat gcccgacatc
      301 accaagcaat tcgatgtcaa aattccggcg gtggcgctgg cggtgaccct gaccctggcg
      361 gtccgcccct tgggcgcctt tctgttcggg cgcctggccg acgattacgg ccgccggccg
      421 atcctgatcc tcaacatcat tctctattcg ctattcggtt tcgccaccgc cttcgcgccc
      481 agcctatcca tgttcctggt gatccgtgcg ttcttcggcg tggcgatggg cggcatctgg
      541 ggcatcggcg catccctcgc tatggaaacg gtcaagccca aggcgcgcgg cttcgtctcc
      601 ggcctgctgc agtcgggcta tcccagcggt tatctggcgg cgtcgctggt gttcggcctg
      661 ctctatgttt cggtcggctg gcgcggcatg ttcatgatcg ggctgatccc cggactgctg
      721 ctggcgatct acatttacat ggcggtgccg gaatcgcccg ccttcctgcg gcccgccggc
      781 gccaaaccgt ccaggcatct catccatctg gtgggcgtgc tggcggtgct ggccgtgatg
      841 ctgctggtgt tggagcgttt cgggcgcgag gtcggcttgc tgtacctggt ggccggcgcg
      901 gtgccgctgc tgatcgtggc ggcggtcctc acgcccttca ttcgccagca ttggaagctg
      961 gcgctctacg ccatcatcct gatgaccggc ttcaatttct tcagccacgg aacccaggac
     1021 ctctatccca ccttcctgcg cgagcagcat catttcggcc ccggcacggt atccctcatc
     1081 accgtggtcc tgaatgtcgg cgccattgtc ggtgggctgt tcttcgcgtc cctcagccag
     1141 tcgctgggac gtcgccagac ggtggtgatc gcggcgctgc tggcgctgcc ggtgatctat
     1201 ttctgggcct atgccgcaac agcggtgact ttggcgctgg gcgctttcct gatgcagatc
     1261 tgcgtccagg gcgcctgggg cgtggtgccg gtacatctca acgaactatc gccgccgggg
     1321 gtgcgcggca cttttgcggg cacggtttat cagttgggca acctgatcgc ctcggtcaat
     1381 gccgtgttcc aagccaagtt cgctgaaagt cagggcggta attactccat tgcgctggcg
     1441 gtggtggctt gttttgcggc gctgttgatc gccaccatga tgtatttcgg accagaagcg
     1501 cgcgacgtcg acatgacgcg ctcgcaataa caaaaaatgg agaagacgat gcggaaattc
     1561 ttggctgttg cggtgttggc gatgatgacc acgcctgccg tggcgcaaag cggcgtgaca
     1621 ctcaaaatta tcaccccggc ggtcaccgcc aatgccgggc tgcgcgatct ggcagccggt
     1681 ttcgagaaag aaatgggcat caaggtcgaa atccagaccc tgaacatggc caagatggtg
     1741 gacgagctga agggcggcac gccgccggct gacatcgtct tcctgcctta cgccctgatg
     1801 gaccaggccc agaccgacaa gaccgtcacc ggcggcagcc ggatcaatat cggccgggtg
     1861 cgcatcggac tggcggtcca taagggcgat cccacaccgg acatttccac catcgacaag
     1921 ctggccgctg tgctgaaggc ggccgacagc gtgatgtatt ccaaccccgc cagcggcagt
     1981 atggaagcca agatcatcga cggcatgctg aacgcccatc ccgaatttg
//
LOCUS       DATMDK010000067         3245 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2779467,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000067 DATMDK010000000
VERSION     DATMDK010000067.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3245)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3245)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3245
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2779467"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(38..1627)
                     /locus_tag="VNN98_01300"
     CDS             complement(38..1627)
                     /locus_tag="VNN98_01300"
                     /inference="COORDINATES: protein motif:HMM:NF016252.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucan biosynthesis protein"
                     /protein_id="HWM60751.1"
                     /translation="MSFSDTPKPNRRLLLAALSASLLPPRAMAAAKAAIGGSIRLGPA
                     RDFSFAALAARAKKNASQPYKAPQLRATQIIKTIDFDAAQKIKFRADHALWAGGPNPD
                     PVSFFHLSRYSGDPVVLHAVEGGKAREILYGPDYFDYGASGLDPKALADLGFAGFRMM
                     DGQNKQTDWLAFQGASYFRSSGQEAQYGASARGIAINTAAATAEEFPRFSEFWLDAHG
                     PVVSIYALLDGPSITGAYKFDAMKDGTAAVIMNVHCELFFRADISRLGVAPLTSMYWY
                     GENERRKAADWRPEIHDNDGLALWTGKGERIWRPLVNPPSVQTNSFVDNNPKGFGLIQ
                     RDRDFANYQDDGAFYDKRPGIWVEPKGNWGPGAVQLVEIPTDDEIHDNIVAYWRPDVG
                     RDGGDIHAGDTLSFDYRLYWQDNEPAYPKTIAKVVATRLGRGGVPGQTPWPRDSHKFV
                     VDFTGGPLTQMQQRFDVTPVAGASRGKIDNAYVIKVVGTDRWRALFDLQLDGNAPVDL
                     RLYLKLGSKTLSETWLYQYFP"
     gene            2132..>3245
                     /gene="mdoH"
                     /locus_tag="VNN98_01305"
     CDS             2132..>3245
                     /gene="mdoH"
                     /locus_tag="VNN98_01305"
                     /EC_number="2.4.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF003962.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucans biosynthesis glucosyltransferase MdoH"
                     /protein_id="HWM60752.1"
                     /translation="MPDIAPRRWLYLFLVLASTVAAVTQMAGVFQVDGFTLRETVILA
                     LFAVLFAWITSSFWLAVFGAYARFAKINLLPLKPPGEPSAARTAILMPVYNEDVARVF
                     SGVRAVWESVGADFDFYILSDSTNPANWVAEELEWQRLRSDMASSSEAVGQETSGQDA
                     HIYYRHRARNTGRKAGNIQDFCENWGQLYDYMVILDADSLMTGKTLTQLVGLMDANPR
                     TALIQAPAQLVGRSSLFARIQQFSSSVYGPIHTAGLAFLQGADGNYWGHNAIIRVHAF
                     MQHCGLPRLPGRPPFGGEIMSHDFIEAAFLRRAGWDVWMAPDIGGSFEEPPPTLMDYL
                     IRDRRWCQGNLQHLRIVFAQGLTLPSRLHLAMGIMSY"
BASE COUNT          560 a         1021 c         1018 g          646 t
ORIGIN      
        1 ccagactttg accagcatgc tgccgggcgg caattagcta cgggaagtat tgatacagcc
       61 aggtctcgct gagcgtcttg gagcccagct tgaggtatag ccgcagatcg accggcgcgt
      121 tgccgtccag ttgcagatcg aacaacgccc gccagcggtc agtgcccacc accttgatga
      181 cataggcatt gtcgatcttg ccgcgcgagg cccccgccac cggcgtcacg tcgaagcgct
      241 gctgcatctg ggtcagcggt ccgccggtga aatccaccac gaatttgtgg ctgtcgcgcg
      301 gccagggagt ctggcccggc acgccgccgc gtcccagccg tgtcgccacc accttggcga
      361 tagtcttggg ataagcgggc tcattgtcct gccagtagag gcgatagtcg aaggacaagg
      421 tgtcgcccgc atggatgtcg cccccatctc ttccgacgtc tggccgccaa taggcgacga
      481 tattgtcgtg gatttcatcg tcggtgggaa tctccaccaa ctgcaccgcg ccgggtcccc
      541 aattgccctt gggctccacc cagatgcccg gccgcttatc gtagaaggcg ccgtcgtcct
      601 ggtaattggc gaaatcgcgg tcgcgctgta tcaggccgaa gcctttggga ttattgtcca
      661 cgaagctatt ggtctgcacc gaaggcggat tgaccaacgg ccgccagatg cgctcgcctt
      721 tgccggtcca cagtgccagc ccgtcattgt cgtggatttc cggccgccag tcggcggctt
      781 tgcgccgctc attctcgccg taccaataca tgctggtcag cggcgccacg cccaaccgcg
      841 aaatgtcggc ccggaagaac agttcgcaat gcacattcat gatcactgcg gccgtgccgt
      901 ctttcatggc gtcgaacttg taggcgccgg tgatcgaggg gccgtccagc agggcataga
      961 tgctgaccac cgggccgtgc gcgtccagcc agaattccga aaagcgggga aactcctccg
     1021 ccgtggcggc cgcggtgttg atggcgatgc cgcgcgcgga cgcgccatat tgcgcctcct
     1081 gtccgctgga gcggaaatag ctggcgccct ggaaggccag ccaatcggtc tgcttgttct
     1141 gtccgtccat catccgaaag ccggcaaagc ccagatcggc cagcgccttg gggtccagcc
     1201 ccgaagcgcc ataatcgaaa tagtcggggc cgtagagaat ctcgcgcgct ttgccaccct
     1261 ccaccgcatg cagcaccacc ggatcgccgg aatagcggct gagatgaaag aacgagaccg
     1321 gatcgggatt gggtccgccg gcccatagag catggtcggc gcggaatttg atcttctggg
     1381 cggcgtcgaa atcgattgtc ttgatgatct gggtggcgcg gagttgtggc gctttataag
     1441 gctggctggc gttttttttg gcgcgcgccg ccagggccgc gaagctgaaa tcccgggccg
     1501 gccccaagcg gatagatccg ccgatggcgg ctttggcggc ggccatcgcc cgtggcggca
     1561 gcaggctggc cgacagggcg gccagcagca ggcgccgatt cggcttgggg gtgtcggaaa
     1621 aactcattcg cagccactgg aaggggcaat cgtggagaag ttaaggcaag atgccccctc
     1681 cgatccggcc ttcgcgcctg gcggcgctcg gcgttcggct ggcttggccg ccagcctcac
     1741 ccttcgctgg ctcaagagcc agctacgttc gacccgcttg gccgcgggcc tcaccctccc
     1801 cctatgcaag cgcgctgacg cgcgcggggg aggtttggtg tgtcactcgc ctcggaattg
     1861 cacagaacga tccattattt cgccgcattg tcacggctta ttaccaatgt cggacgggcg
     1921 acaattcggg tttaccaaat ggattctcag tctcgcgcat ttgaagttcc cttcgtgtcg
     1981 agcttggacg cgggtacgcc gctgcgctgc ccccggccga tggctgcaca gcccattgtg
     2041 gcatggacgc cggtccgcat cctgggcgcg ctgttcgcgg cgctggtttt gacccccgtc
     2101 cagctggctc cggccgtgat aacccgccgc cgtgcctgac atcgcgccgc ggcgctggct
     2161 ttatctgttc ctggtgctgg cctccacggt cgcggctgtc acccagatgg cgggcgtgtt
     2221 ccaggttgac ggcttcacgc ttcgcgaaac cgtcattctt gcgctgttcg ccgtcctgtt
     2281 cgcctggatc acatcgtcct tctggctggc ggtgttcggc gcttatgcgc gatttgcaaa
     2341 aatcaatctg ttgccgctga aaccgcccgg cgagccatcg gcggcgcgca ctgccattct
     2401 gatgcccgtt tataatgaag acgtggcgcg ggtattttcc ggtgtccgcg ctgtctggga
     2461 atcggtgggg gcggatttcg acttctatat actcagtgac agcaccaatc ccgccaactg
     2521 ggtggccgag gaactggaat ggcaaaggct gagaagcgac atggcctcaa gtagcgaagc
     2581 ggtaggccaa gaaacaagtg ggcaagacgc ccatatctac tatcgccacc gcgccagaaa
     2641 caccggacgc aaggccggca acatccagga cttttgcgag aattggggcc agctttacga
     2701 ctatatggtg atcctggacg ccgacagcct gatgaccggc aaaacattga cgcagctggt
     2761 ggggctgatg gacgccaatc cccgcaccgc gctgatccag gcgccggctc agctggtggg
     2821 gcgcagctcg ctgtttgcgc gtatccagca attctcctcc agcgtctatg gtcccatcca
     2881 cacggcaggg ctggccttcc tgcagggtgc cgacggcaat tactggggcc ataacgccat
     2941 cattcgggtg catgccttca tgcagcattg cggactgccg cgcctgccgg gcaggccgcc
     3001 tttcggcggc gagatcatga gtcacgattt catcgaggcg gcattcctgc gccgcgccgg
     3061 atgggatgtg tggatggcgc ccgacatcgg cggctcgttc gaggagccgc cgcccaccct
     3121 gatggattat ctgatccgtg accggcgctg gtgccaaggc aatctccagc atctgcgcat
     3181 cgtcttcgcg caaggcttga ccttgcccag ccggctgcat ctggcgatgg ggatcatgag
     3241 ctatg
//
LOCUS       DATMDK010000068         3336 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1636041,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000068 DATMDK010000000
VERSION     DATMDK010000068.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3336)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3336)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3336
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1636041"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(186..977)
                     /locus_tag="VNN98_01310"
     CDS             complement(186..977)
                     /locus_tag="VNN98_01310"
                     /EC_number="4.1.1.65"
                     /inference="COORDINATES: protein motif:HMM:NF003679.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004609 - phosphatidylserine decarboxylase
                     activity [Evidence IEA];
                     GO_process: GO:0008654 - phospholipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylserine decarboxylase"
                     /protein_id="HWM60753.1"
                     /translation="MATNCPSASRRARSVPFPSRAAAPPDIRHTGFKGAAPVAAALFP
                     WELPLKIHREGYPFIAIFVAINLLAFLLASWLGWLLLPVTLWCVAFFRDPERKTPEEP
                     GLIICPADGKLLPIVNAAPPAELGMGEAPRPRLSIFMNVFNVHVNRSPVSGSVVTLSY
                     RPGKFFNASFDKASLHNERMSIRLRPDGRGDGVQDLAVVQIAGLVARRIVCDLAQGEG
                     VRRGNRFGIIRFGSRVDVYLPPGTEILVKPGITTRAGETVLARFL"
     gene            complement(901..1200)
                     /locus_tag="VNN98_01315"
     CDS             complement(901..1200)
                     /locus_tag="VNN98_01315"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM60754.1"
                     /translation="MAVDGKWEIVINSPLGAQKATLDIATQDGALTGTQTAQQGSGPL
                     ENGKVDGNTVSWSAKITSPMPLTLDFTGTVDGDKLSVSVTAGSFGSFPFTGGRAA"
     gene            1281..2450
                     /locus_tag="VNN98_01320"
     CDS             1281..2450
                     /locus_tag="VNN98_01320"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF022137.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006364 - rRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent rRNA methyltransferase"
                     /protein_id="HWM60755.1"
                     /translation="MSRKSIILPKGRRARGGSPWIFSNEIRMDDAAKAITPGAVVNVR
                     GEDGRPFGTGYFNPKSLIAVRLWSDDCDVAIDRDFFTARLKRALALRSAIYDKPFYRL
                     LHAEGDGVPGLVIDRFDDTLTVQIGTAGMEKQIEPLIQALDIVLKPKTIVLRNDAPSR
                     ALEGLDSYVKTVKGEGHRIAVQENGARYIADLAEGQKTGWYYDQRDNRAFIAGFAKGK
                     TVLDAYSYTGGFGILAAKAGAKEVVCLDSSAPALAIAEESARANGVTVQAVKADVFEE
                     LGRLKTAGETFDIVVADPPPFVKSKKDLEPGAKAYRKLARLAAEVTAPNGLLLIASCS
                     HNILPERFAAECAQGLLRAGRRAALIRQAGAGPDHPVHPLLPESAYLKAVVYALD"
     gene            complement(2563..>3336)
                     /locus_tag="VNN98_01325"
     CDS             complement(2563..>3336)
                     /locus_tag="VNN98_01325"
                     /inference="COORDINATES: protein motif:HMM:NF014731.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015079 - potassium ion transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="KUP/HAK/KT family potassium transporter"
                     /protein_id="HWM60756.1"
                     /translation="AAYGIAVTGVMVISTALVAVVARYRWNWRRSTVIAIFGILGLID
                     IAFMGSNALKIVQGGWLPLAVAAATFVVMDTWRIGRRVHQEAVRDGALGLDLFLERAD
                     KFSQRIAGTAVFLSPRLDVVPNALLHSLKHYKVLHERVVICTVTVADTPHVSKAKRVT
                     VDKLGKGFFAVRISYGFFESPDIPAALALARSQGLALEPDSTTYFLGRETLVPGEKPS
                     MKRWRVGLYMWLVSNALSPARFYHLPPGRVVELGTQVSI"
BASE COUNT          648 a         1056 c         1085 g          547 t
ORIGIN      
        1 ccatcgcgaa gcggatcgcg gtgatgccgg aagccagcgc cagcagggtg agcgatgacg
       61 gcaccagctt gccgatggaa agatcttcca gcttttccag gcgggcggcc acgatctggc
      121 gggcgcgctt gcggcgggaa aggcggtccg gtggctgcaa gttcactctc tctctataaa
      181 acggcttata aaaaacgggc caatacggtt tcacccgcgc gcgtcgtgat gccgggctta
      241 accagaatct ctgtacccgg cggcagatag acgtccaccc ggctaccgaa gcggataatg
      301 ccaaatctgt tgccccggcg caccccttct ccttgcgcca agtcgcagac aatccgcctt
      361 gccaccaggc cggcgatctg caccaccgcc aggtcttgca ccccgtcgcc ccgcccgtca
      421 gggcgcaggc ggatggacat gcgttcattg tgcaggctgg ccttgtcgaa ggaggcgtta
      481 aagaacttgc cgggacggta ggacaaggtc accacgctgc cagataccgg actgcggttc
      541 acatgcacgt tgaacacgtt catgaaaatg gacaggcgcg gacgcggggc ctcgcccatg
      601 cccagctcgg cgggcggcgc ggcgttgacg atcggcaaca gcttgccatc agcggggcag
      661 atgatcaggc cgggttcctc aggcgtcttg cgttcgggat cgcggaaaaa ggcgacgcac
      721 cacagggtga cgggcaagag cagccagccc aaccaagacg ccagcagaaa ggccagcagg
      781 ttgatcgcca caaaaatggc gataaaggga taaccttcgc ggtggatttt caaaggcaac
      841 tcccaaggaa aaagggcagc cgcaacaggg gctgcccctt tgaatcccgt gtgccttata
      901 tcaggcggcg cggccgcccg tgaagggaaa ggaaccgaac gagcccgccg tgacgctgac
      961 ggacagtttg tcgccatcca ccgtgccggt gaaatccagg gtcaggggca tgggcgaggt
     1021 gatcttggcc gaccagctga cagtgttgcc gtccaccttg ccgttttcca gcgggccgga
     1081 gccttgctgt gccgtctggg tgccggtcag ggcgccgtcc tgggtggcga tgtccaacgt
     1141 ggctttttgc gcgcccaggg gcgaattgat gacgatttcc cacttgccgt ccacggccat
     1201 gctgctctcc tgggtgaaat aaggcgcgca tctaaggacg gcatagaccc cggcgcaaga
     1261 gggctgtaca ggtctcgccc atgtcgagaa aaagcatcat tttgccgaaa ggccggcgcg
     1321 cccgcggcgg ctcgccctgg atcttttcca atgaaatccg catggatgac gccgccaagg
     1381 cgatcacccc aggcgcggtg gtcaatgtgc gcggcgagga tgggcgcccc ttcggcacgg
     1441 gttacttcaa tcccaaaagc ctgatcgcgg tcaggctgtg gtcggacgat tgcgatgtgg
     1501 ccatcgaccg cgatttcttc accgcgcggc tgaagcgggc gctggcgctg cgcagcgcga
     1561 tttatgacaa gcctttttat cgcctgctcc acgccgaggg cgacggcgtg ccggggctgg
     1621 tgatcgaccg tttcgacgac actttgacgg tgcagatcgg cacagccggc atggaaaagc
     1681 agatcgagcc cctgatccag gcgctggaca tcgtgctgaa gcccaaaacc atagtgctgc
     1741 gcaacgatgc gccgtcgcgc gccctggaag gactggactc ttatgtgaag acggtgaagg
     1801 gcgaaggcca ccgcatcgcg gtccaggaaa acggcgcgcg ctatatcgcc gacctggccg
     1861 aggggcagaa gaccggctgg tattacgatc agcgcgacaa tcgcgccttc atcgccggtt
     1921 tcgccaaagg caagacggtg ctggacgcct attcctatac cggcggtttt ggcatcctcg
     1981 cggccaaggc gggcgccaag gaagtggtct gcctggacag ttcagcgcct gcactggcca
     2041 tcgcggagga aagcgcccgc gccaatggcg tgaccgtcca ggccgtcaag gccgacgtgt
     2101 ttgaggagct gggccggctg aaaaccgccg gtgagacatt cgatatcgtg gtggcggacc
     2161 cgccgccctt tgtgaaatcg aaaaaggatc tggagccggg ggccaaagcc tatcgcaaac
     2221 tggcgcggct ggcggccgag gtcacggcgc cgaatgggtt gctgctgatc gcttcctgct
     2281 cgcacaatat tctgcccgag cgctttgcgg cggaatgcgc ccaaggcctg ctgcgcgccg
     2341 gccgccgcgc cgcgctgatc cgccaggccg gtgcaggccc ggatcatccg gtgcatccgc
     2401 tgctgccgga gtcggcgtac ctcaaggcgg tcgtctacgc cttggattga tcgcgatctc
     2461 ggcgcgaggg attttggccg atggccagga gcgtcgcgcg gagcgtgcga aagcacgtga
     2521 gcacgcgcga cgccgccagc gggcaaaaga cccgcgccct cgttaaatgg aaacctgcgt
     2581 gcccagctcc accaccctgc ccggcggcag gtgatagaaa cgcgcggggc tgagggcgtt
     2641 ggacacgagc cacatataca ggcccacgcg ccagcgtttc atgctgggct tctcgcccgg
     2701 caccaaggtc tcgcgtccca ggaagtaagt ggtggagtcc ggctccagcg ccaggccttg
     2761 gctgcgggcc agcgccaggg ctgcgggaat gtcggggctc tcgaaaaagc cgtaagagat
     2821 gcgcaccgcg aaaaagccct tgcccagctt gtccaccgtg acgcgcttgg ccttggagac
     2881 atggggcgtg tcggccaccg tgacggtgca gatcaccacc cgctcatgca acaccttgta
     2941 atgcttcagg ctgtgcagca gggcattggg taccacgtcc aggcgcggcg acaggaacac
     3001 ggcggtgccg gcaatgcgct ggctgaattt gtcggcacgc tccaggaaca ggtccaggcc
     3061 cagggcgccg tcgcgcaccg cctcctggtg cacccgccgg ccgatccgcc aggtgtccat
     3121 caccacgaaa gtggccgccg ccaccgccag cggcagccag ccgccttgca cgatcttgag
     3181 cgcgttcgag cccatgaagg cgatatcaat caggcccagg ataccgaaga tcgcgatcac
     3241 cgtggagcgt ctccagttcc agcgatagcg cgccaccacc gccaccaaag ccgtggaaat
     3301 caccatcacg cccgtcaccg cgatgccgta cgccgc
//
LOCUS       DATMDK010000069         2460 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_278749,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000069 DATMDK010000000
VERSION     DATMDK010000069.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2460)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2460)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2460
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_278749"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..339
                     /locus_tag="VNN98_01330"
     CDS             <1..339
                     /locus_tag="VNN98_01330"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM60757.1"
                     /translation="KLKPAPAPILLHGHCHQKAFGAVTPILDVLRLIPGAAPELIETS
                     CCGMAGSFGYDADHYDVSMQMAELSLLPAVRSKPDAIIVADGTSCRHQITHGAGRAAR
                     HIAVLLDELS"
     gene            complement(336..758)
                     /locus_tag="VNN98_01335"
     CDS             complement(336..758)
                     /locus_tag="VNN98_01335"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: protein motif:HMM:NF024970.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HWM60758.1"
                     /translation="MEKSPPELEWRYAAKTDSLYAALSAIEQACMAWNIDAALISRAR
                     IVVEELFSNTIKYGYGKECDAVIRIRLSASPRLTLVYEDDAPLFDPTRWKSLADEHVR
                     PDERPEGRAGIAMVMGLCATAIYQPRDGRNALTMTFGG"
     gene            757..1212
                     /locus_tag="VNN98_01340"
     CDS             757..1212
                     /locus_tag="VNN98_01340"
                     /inference="COORDINATES: protein motif:HMM:NF016648.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FecR domain-containing protein"
                     /protein_id="HWM60759.1"
                     /translation="MRIRPSGILGCAIALAMSFATAQADDAIGQVKTKTGTVSVQRHG
                     KTQPLAIGEHVFQSDLISTAKGASVGLTFADNSMMSLGPNSQLALDQFRFDTTTHVGV
                     FNTSLSKGTLAVKSGQIVQQTPEAMHVKTPAALLGVRGTEFVVRADGKS"
     gene            1212..1802
                     /locus_tag="VNN98_01345"
     CDS             1212..1802
                     /locus_tag="VNN98_01345"
                     /inference="COORDINATES: protein motif:HMM:NF012894.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015288 - porin activity [Evidence IEA];
                     GO_function: GO:0042834 - peptidoglycan binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="OmpA family protein"
                     /protein_id="HWM60760.1"
                     /translation="MAGTLRFLAPLMAVLLAGCASHEMVVVLPAADGHIGGVVVQTGD
                     KKVVLDKAYASDAPGDSQAGTAAPEDVNKTFADVLAARPIPPGEHKLYFQNDSDEMRD
                     DSKIEFNEKVFSDVARRAAAEIVIIGHTDTVGALEYNDQLSLGRAEAIKKLLLDQKGK
                     LPPDMSVTTAGRGKRDDKDADETPNPNERYVDIIVQ"
     gene            complement(1789..>2460)
                     /locus_tag="VNN98_01350"
     CDS             complement(1789..>2460)
                     /locus_tag="VNN98_01350"
                     /EC_number="3.1.3.16"
                     /inference="COORDINATES: protein motif:HMM:NF018884.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004722 - protein serine/threonine
                     phosphatase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PP2C family protein-serine/threonine
                     phosphatase"
                     /protein_id="HWM60761.1"
                     /translation="FDLDALMIPARHIGGDLFDFFKIDNDHLFFAVGDVSGKGMPAAL
                     FMALGKSLCKSCALRGESDIGAIVNLTNREISRDNPEMLFITLFAGILNLATGELRFC
                     NAGHDAPFLLRGGEAPHSLEAEGGPPLCIVEDFDYPAERFQLRPGDMLCVITDGITEA
                     LTEQGVVMGRARAEAVLAVLPPDAAPGAATQALHHAVEDYVAGAEASDDLTILAVRWH
                     GPTAR"
BASE COUNT          470 a          777 c          774 g          439 t
ORIGIN      
        1 aagctcaaac ctgcccccgc gcccattctg ctgcatggcc attgtcatca gaaggccttc
       61 ggcgcggtca cgccaatcct ggatgtcttg cggctgatcc caggcgcggc gccggaattg
      121 atcgagacgt cttgctgcgg catggccggc agcttcggct atgacgccga tcactatgac
      181 gtttcgatgc agatggccga actcagcctg ctgccggcgg tgcggagcaa gccggacgct
      241 atcatcgtcg ccgacggcac cagctgtcgc caccagatca cccatggcgc gggccgggcc
      301 gcccgtcaca tcgcggtatt gctggacgaa ctctcctagc cgccaaaggt catggtcagc
      361 gcgttgcgcc cgtcccgcgg ctgatagatc gccgtggcgc acaggcccat caccatggcg
      421 ataccggcgc ggccttcggg gcgctcatcg gggcgaacat gctcatccgc cagggatttc
      481 cagcgcgtgg gatcgaacaa gggcgcgtca tcctcataga cgagagtaag gcgtggactt
      541 gcgctcaggc gaatgcgaat gacggcatcg cattccttgc catagccata tttgatggtg
      601 ttggagaaaa gctcctcgac cacaattcgc gcccgtgata tcaaggcggc gtcgatattc
      661 catgccatgc aggcctgctc gatcgcgctc agcgcggcat acaggctgtc tgttttcgcg
      721 gcgtaacgcc attccagttc cgggggggat ttttccatgc gcatcaggcc atcaggaatt
      781 ttgggctgcg ccatcgcgct ggccatgagt ttcgccaccg cccaggcgga cgacgccatc
      841 gggcaggtca agaccaaaac cggtactgtc tcggtgcaac gtcacggcaa gacccagcct
      901 ctcgccatcg gcgagcatgt tttccagtcc gaccttatca gcaccgccaa aggcgcttcg
      961 gtcggcctca ccttcgcgga caacagcatg atgtcgctgg gccccaatag ccagctcgcg
     1021 ctggatcagt tccgcttcga tactacgacg catgtggggg ttttcaatac gtcgctgtcc
     1081 aagggcaccc tggcggtcaa atcgggacag atcgtgcagc agacgcccga agcgatgcac
     1141 gtcaaaaccc cggcggcgct gctgggcgtg cggggcaccg aatttgtcgt gcgcgccgac
     1201 gggaaaagct gatggccggg acccttcgtt tcctggcgcc gctgatggcg gtcctgctcg
     1261 cgggctgcgc ttcccatgag atggtggtgg tgctgccggc cgccgatggc catatcggcg
     1321 gtgtggtggt gcagaccggc gacaagaaag ttgtgctgga caaggcctat gcctcggacg
     1381 cgccgggcga cagccaggcg ggcaccgccg cgccggagga cgtcaacaag actttcgccg
     1441 atgtgctggc ggcgcggccg atccccccgg gggagcacaa gctctatttt cagaatgaca
     1501 gcgacgagat gcgggacgat tccaagatcg agttcaatga aaaggtcttc tctgatgtcg
     1561 cccgccgcgc ggcggcggaa atcgtcatca tcggccatac cgacacggtg ggagcgttgg
     1621 aatataacga ccagctgtcg ctgggccgcg ccgaagccat caagaagctg ctgctggatc
     1681 agaagggcaa gcttccgccg gacatgagcg ttaccacggc ggggcgcggc aaacgcgacg
     1741 acaaggacgc cgacgagacg cccaacccca atgagcgcta tgtcgacatc atcgtgcagt
     1801 aggtccgtgc cagcgcaccg ccaggatggt caggtcgtcg gaggcttccg cgccggcgac
     1861 atagtcttcc accgcatgat gtagcgcctg ggtcgctgcg cccggtgccg catccggcgg
     1921 caacaccgcc aatacggcct cggcccgcgc ccggcccatc acaacgcctt gctcggtcaa
     1981 ggcttcggtg atgccatcgg tgatcacgca cagcatgtcg ccggggcgaa gctgaaagcg
     2041 ttccgccgga tagtcgaaat cttccacgat gcagagcggc gggccgcctt ccgcctccaa
     2101 ggaatgcggc gcctcgccgc cgcgcagcag gaatggcgcg tcatgtccgg cgttgcagaa
     2161 gcgcagctcg cctgtcgcca gattcaaaat accggcgaag agggtgatga acagcatttc
     2221 cggattgtcg cgcgatattt cgcggttggt gaggttgacg atggcgccga tatcgctttc
     2281 gccgcgcagg gcgcagcttt tgcatagcga cttacccagc gccataaaca gggcggcggg
     2341 catgcctttg ccgctgacat cgcccacggc aaagaacaga tggtcgttgt ctatcttgaa
     2401 gaaatcgaac aggtcgccgc cgatatgccg cgccggaatc atcagcgcgt ccagatcgaa
//
LOCUS       DATMDK010000070         3201 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_279033,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000070 DATMDK010000000
VERSION     DATMDK010000070.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3201)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3201)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3201
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_279033"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1019)
                     /locus_tag="VNN98_01355"
     CDS             complement(<1..1019)
                     /locus_tag="VNN98_01355"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF014414.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cyclopropane-fatty-acyl-phospholipid synthase
                     family protein"
                     /protein_id="HWM60762.1"
                     /translation="MSLIPASYIEKSWRKALASLEYGTLEFIAPNGEVTIAKGAQPGP
                     SARFHIHDWDVLRRIMARGDIGLGEEYIAGSWDTDSVERLVSLFLLNLDHFADFSDGN
                     ILNRLCFVIHNALVRRNSISGSARNIQDHYDVGNDFYSLWLDKSMTYSSALYDGAADL
                     YRAQQNKYERILSKFTQKKAAVLEIGCGWGGFAERAAADSHHVTGLTISPSQHKFACQ
                     RLKGAAEIKLEDYRRCKGSFDNIVSIEMFEAVGEHYWPAYFTTVAERLKRGGRAIIQT
                     ITIKDELFAGYRTRSDFVRHYVFPGGMLPSLARFREEAEKAGLKFAGAFGFGKDYART
                     LREWLV"
     gene            complement(1067..2419)
                     /locus_tag="VNN98_01360"
     CDS             complement(1067..2419)
                     /locus_tag="VNN98_01360"
                     /inference="COORDINATES: protein motif:HMM:NF013739.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HWM60763.1"
                     /translation="MARIAVVGTGISGLGSAYLLSPDHDITVYEKAARIGGHSRTVTV
                     DYDGRAVPVDTGFIVFNRPNYPNLSGLFAHLDVPTHASDMTFAASIRDGWLEWGARDL
                     DSVIGQRRNLLRPRFGLLVRDVMKFNTQAQGVVEHHPELSLEGLIQKLGLGEWFRRYY
                     LLPMSGAIWSCPPCEMMNFPARALVRFFANHHLMSFTGQPQWRTVTGGSQEYIKRLTV
                     PFAHRIRTRCGAAAVTRQDGKVQIKDTNGAVESYDHVVMASHGNETLALLKDADRDEQ
                     AALACFRYQKNRAVLHRDQSLMPRQRRCWASWVYTSDGEFLHPKITVTYWMNRLQGID
                     DRTPLFVSLNPKRNIPGELTFDQTEFDHPVFDQAALAAQGRIAALQGRRGTWFAGAHL
                     GHGFHEDGLTSAVRVARALGAAVPWETGAVRGAPQQKARQPVMLPGFPAQGPVPAELF
                     "
     gene            2532..2933
                     /locus_tag="VNN98_01365"
     CDS             2532..2933
                     /locus_tag="VNN98_01365"
                     /inference="COORDINATES: protein motif:HMM:NF021462.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2177 family protein"
                     /protein_id="HWM60764.1"
                     /translation="MPYLIAYIACVLVMGGLDFLWLINTSGALYQRDLGPLLAVNPNM
                     TVAAIFYLTYIVGVLIFAVRPALAAGDWKTAALYGALFGFFTYATYDLTNYATMKVWT
                     LRVTLLDIGWGTLLTAATASAGAVAALKLAK"
     gene            complement(2937..>3201)
                     /locus_tag="VNN98_01370"
     CDS             complement(2937..>3201)
                     /locus_tag="VNN98_01370"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM60765.1"
                     /translation="APVMLSTIVHPPSKIATANVLDSQGQTIGAVQRVEVASDGTPTK
                     LAVALTGTDEKLVMLDANAVKYDAARNEILAQQSGAQIRSGAS"
BASE COUNT          574 a          974 c         1037 g          616 t
ORIGIN      
        1 accagccatt cgcgcagggt gcgggcataa tccttgccga aaccgaaggc gccggcgaat
       61 ttcaaccccg ccttttcggc ttcctcgcgg aaacgcgcca gggacggcag catgccgccg
      121 gggaaaacat aatggcggac aaagtcgctg cgggtgcggt aaccggcgaa cagttcgtcc
      181 ttgatggtga tggtctggat gatggcgcgg ccaccgcgtt tcagccgctc ggccaccgtg
      241 gtgaaatagg cgggccagta atgctcgccc accgcctcga acatttcgat ggaaacgata
      301 ttgtcgaagc tgcctttgca gcggcgatag tcttccaact tgatctcggc ggctcccttc
      361 aatcgctggc aagcgaattt atgctgagag ggcgagatgg tcaggccggt gacatggtgg
      421 ctgtcggctg cggcgcgctc ggcaaagccg ccccagccgc agccgatctc cagcacagcg
      481 gctttcttct gggtgaattt ggaaaggatg cgctcatact tgttctgctg ggcgcgatac
      541 agatccgcgg cgccgtcata cagcgccgag gaataggtca tgctcttgtc cagccacagc
      601 gaatagaaat cattgccgac gtcatagtga tcctggatat tgcgcgccga tccggaaatg
      661 gaattgcgcc gcaccagcgc attgtggatc acaaagcaca ggcggttaag gatgttgccg
      721 tccgagaaat cggcgaaatg atccaggttg agcaggaaca ggctcaccag ccgctcaacg
      781 ctgtcggtat cccagctgcc ggcgatatat tcctcgccca ggccgatatc accgcgcgcc
      841 atgatccggc gcagcacgtc ccagtcgtga atatggaaac gggcggacgg ccccggctgc
      901 gcgcctttgg cgatggtgac ctcgccgttg ggggcgatga attccagggt gccgtattcc
      961 agcgatgcca gcgccttgcg ccagcttttc tcgatatagg aagcaggtat cagggacatc
     1021 gcaattttcc catcaggcaa cgtccaagac taagcttgga cggggctcaa aacaattccg
     1081 ccggcaccgg accctgggcg ggaaatcccg ggagcataac gggctggcgg gccttttgtt
     1141 gcggtgcgcc gcggacggcg ccggtctccc acggcacggc cgcgcccagg gcgcgcgcca
     1201 cccggacggc gctggtgagc ccgtcttcgt ggaagccatg gcccagatgg gctccggcga
     1261 accaggtgcc gcggcggccc tgcagggcgg cgatccgccc ctgggcggcg agtgcggcct
     1321 ggtcgaagac gggatgatcg aactcggtct ggtcgaaggt caattcgccc ggaatgttgc
     1381 gcttgggatt gaggctgaca aacagcgggg tgcggtcgtc gatcccctgg agccggttca
     1441 tccaataggt gacggtgatc ttgggatgga ggaattctcc gtccgacgta tagacccagc
     1501 tggcccagca gcggcgctgg cgcggcatca ggctttggtc gcggtgcagc acggcgcggt
     1561 ttttctgata gcgaaaacag gccaacgctg cctgttcgtc gcggtcggcg tccttcagca
     1621 gcgccagcgt ctcattgccg tggctggcca tcaccacatg atcgtagctt tcgaccgcgc
     1681 cgtttgtgtc cttgatctgg acctttccgt cttgacgcgt caccgccgcg gcgccgcaac
     1741 gggtgcggat gcgatgggcg aagggcacgg tgaggcgctt gatatattcc tgcgatccgc
     1801 cggtgacggt gcgccattgc ggctggccgg tgaaggacat cagatgatga ttggcgaaga
     1861 agcgcaccag ggcacgggct ggaaaattca tcatttcgca gggcgggcag ctccagatcg
     1921 cgccggacat gggcagcagg taatagcggc gaaaccattc ccccaggccc agcttctgga
     1981 tcaggccttc caggctgagt tcgggatggt gctcgaccac gccttgcgcc tgggtgttga
     2041 atttcatcac gtcgcgcacc agcaggccga agcgggggcg cagcagattg cggcgctggc
     2101 cgatcaccga atccaggtcc ctggcgcccc attccagcca gccgtcccgg atcgaagcgg
     2161 cgaaggtcat gtcgctggca tgggtgggca cgtccagatg cgcgaacagg cccgacaggt
     2221 tgggatagtt ggggcggttg aaaacgatga agccggtatc caccggcacg gcgcggccgt
     2281 catagtccac cgtcacggtg cggctgtggc cgccgatccg cgccgctttt tcatagacgg
     2341 tgatgtcgtg atccgggctc agcaggtagg cactgcccag ccctgaaatc cccgtcccga
     2401 caaccgcaat cctggccatt ggtccccaac ctctggtccc gtttacgccc ccatgcgcaa
     2461 gccggatcac atatgtttag atgatccggg cgcgcctggc gcgcgtaaaa cagcagcagg
     2521 gagggggcct aatgccgtat ctgatcgcct atatcgcgtg cgtcctggtg atgggcgggc
     2581 ttgatttttt gtggctgatc aacacttcgg gggcgcttta tcagcgggac ctggggccgc
     2641 tgctggccgt caaccccaat atgaccgtgg ccgcgatctt ctacctgacc tatatcgtgg
     2701 gcgtgctgat ctttgcggtg cgcccggcgc tggccgcggg cgattggaaa accgccgctc
     2761 tgtatggcgc gctgttcggc tttttcacct acgccaccta tgacctgacc aactatgcca
     2821 ccatgaaggt ctggaccttg cgggtgactt tgctggacat cggctggggc acactcctca
     2881 ccgccgcgac cgccagcgcg ggcgcagttg ccgcgctcaa gctggcaaaa tagcggtcag
     2941 ctggcgccgg acctgatctg agcgccggac tgctgcgcca ggatttcgtt cctggctgcg
     3001 tcgtatttca ccgcgttcgc atccagcatc accagttttt catccgtgcc ggtcaacgcc
     3061 accgcgagtt tggtgggcgt gccgtcggac gccacctcca cccgctgcac ggcgccgata
     3121 gtctgaccct gggagtccag cacattggcg gtggcgatct tgctgggcgg atgcacgatg
     3181 gtggaaagca tgacgggggc c
//
LOCUS       DATMDK010000071         3203 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_3242940,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000071 DATMDK010000000
VERSION     DATMDK010000071.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3203)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3203)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3203
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3242940"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..240)
                     /locus_tag="VNN98_01375"
     CDS             complement(<1..240)
                     /locus_tag="VNN98_01375"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocation signal
                     domain-containing protein"
                     /protein_id="HWM60766.1"
                     /translation="MKRRDFLTGSAASGAIALPPLAWAQEKSKLKITGIRLVKLTPRN
                     PPPSYTPSPGSWSTQGVEVSAPPNIYPEFRPTRSLF"
     gene            complement(298..1848)
                     /locus_tag="VNN98_01380"
     CDS             complement(298..1848)
                     /locus_tag="VNN98_01380"
                     /inference="COORDINATES: protein motif:HMM:NF019607.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-dependent sugar dehydrogenase"
                     /protein_id="HWM60767.1"
                     /translation="MKRIWLAALALSLSGGLSGAALAQPGVQQNATPAQPAELRIPPR
                     KLQAPVPALLQSRANEIFNTSCAACHGTAAQAGPSARSLFAADFLASRSDAQIVQALT
                     DGVPGTPNHSFKTLFFPDEIAQMPALLRIRGGIVNRKVGVVPDINGKLFNSQKASFKV
                     ESLVKGLNQPWGMAFLPDGRLIFTERSGQLRFMDKAGNASAPVKGTPAVFERQDGGML
                     DVALHPDFAKNGWIYLSYSTVAPGYQVQPGDEAAPNMAPPTMTWVVRGKVNANNEWVD
                     QQVLFNPPADSYRNSADHYGSRFLFDRKGHFFWSMGERHDYQMAQNLASPLGKIHRLN
                     DDGTIPKDNPFVHTPGALGSIWSYGHRNPEGLSFDPATGIFWETEHGPVGGDEVNIIE
                     PGKDYGWGVATMGIEPGIGRLHATGMTDPVTFFNPSIGPSGIAFYTGDKFPAWKGNLF
                     ITGMVGEKLIRMEIKGRQIVSQETVIADYGRVRDVKAGPDGLIYVLLQNMNGDPKGGS
                     IIRLVPAN"
     gene            complement(1913..>3203)
                     /locus_tag="VNN98_01385"
     CDS             complement(1913..>3203)
                     /locus_tag="VNN98_01385"
                     /inference="COORDINATES: protein motif:HMM:NF012428.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="aminotransferase class III-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HWM60768.1"
                     /translation="HNRRYIPGGISSVNRSIDPAITFVKGEGAYLWDSEGKRYIDYHA
                     GFAPYFLGHNFKPVNDAAAAALTSGDSLFGAGPSIAEGRLAELICENVPAVEKITLLN
                     TGSEATSLAIRIGRAVTRRSHIIVMQGGYNGNHDELATNVFNSLAEIGPRVSPGEYPL
                     KPLGAGTTIQQAHFTHAVNYNDLESVRYVCRRFPVAALITEPLLQNIGVVKPQPGYLE
                     GLRDLADEFGFLLVFDEVKTGFRHAVGGYSQVCGVMPDLVVYGKAVANGFPLAVVGGK
                     AEYMDSIIDPDPSRRPFVAGTYNGHPVAVAAAIETVRYLVANKDTLYPKMEAMGAAME
                     AGILDIFARRGITACVARQGSAFSFYLMEKPPADLHDIIQGHDFARDVALRRALIQRG
                     VFFVPIATKQCSLSAAHSDADVQFTLEQFESAVATIW"
BASE COUNT          582 a          986 c         1044 g          591 t
ORIGIN      
        1 gaacaagctg cgggtggggc ggaattcggg atagatattg ggcggagcgg aaacttccac
       61 gccttgcgtg gaccaggagc ccggcgatgg cgtgtaactg ggcggcggat tgcgcggcgt
      121 cagctttacc agccggatgc cggtgatctt gagcttggac ttttcctgcg cccaggccag
      181 cggcggcaag gcaattgcgc ccgaggccgc cgaacccgtc aaaaaatcac gccgtttcat
      241 cttgctctcc ccagggccgg cgccttctgg cgtttcttgg aaagaagcct agccccctta
      301 attcgcgggc accagccgga tgatcgagcc gcccttgggg tcgccattca tgttttgcaa
      361 cagcacatag atcagcccgt ccggcccggc cttgacgtcg cgcacccggc cataatcggc
      421 gatcaccgtt tcctgggaca caatctggcg gcccttgatc tccatgcgga tcagcttctc
      481 gccgaccatg ccggtgatga agagattgcc tttccaggcc gggaatttgt cgccggtata
      541 gaaggcgatg ccgctgggtc cgatcgaggg attgaagaag gtgacgggat cggtcatgcc
      601 ggtggcatgc aggcggccga tccccggttc gatgcccatg gtcgccacgc cccagccgta
      661 atccttgcct ggctcgatga tgttgacctc gtcgccgccc acggggccat gctcggtctc
      721 ccagaaaatg ccggtggccg gatcgaaact caggccttcg ggattgcgat ggccatagct
      781 ccagatactg cccagcgcgc ccggcgtatg cacaaaggga ttgtccttcg ggatcgtgcc
      841 atcgtcgttg aggcggtgaa tcttgcccag cggcgaggcc agattctgcg ccatttgata
      901 gtcgtggcgc tcgcccatgg accagaagaa gtggcccttg cggtcgaaca ggaagcgcga
      961 gccataatgg tcggcgctgt tgcgatagga atcggccggc ggattgaaca ggacctgctg
     1021 atccacccac tcattgttgg cgttcacctt gccgcgtacc acccaggtca tggtgggagg
     1081 cgccatgttg ggcgccgcct cgtcgccggg ctgcacctga tagcccgggg ccacggtgga
     1141 ataagacaaa tagatccagc cattcttggc gaagtccggg tgcagcgcga cgtccagcat
     1201 gccgccgtcc tggcgttcga acacggcggg cgtgcctttc acgggcgcgg aggcgttgcc
     1261 ggccttgtcc atgaagcgaa gctggccgga acgctcggtg aagatcagcc ggccgtcggg
     1321 caaaaatgcc atgccccaag gctggttcag acctttgacc agactttcga ccttgaagct
     1381 ggccttctgg ctgttgaaca gcttgccgtt gatgtcgggc accacgccga ccttgcggtt
     1441 cacgatgccg ccgcggatgc gcagcagggc cggcatctgg gcgatctcgt ccggaaagaa
     1501 cagggtcttg aaactgtgat tgggcgtacc cggcacgccg tcggtcaatg cctggacgat
     1561 ctgggcatcg ctgcggctgg ccaggaagtc cgcggcgaac aggctgcgcg cgctgggccc
     1621 tgcctgtgcg gcggtgccgt gacaggccgc gcagctggtg ttgaaaatct cgttggcgcg
     1681 cgattgcagc aaggcgggca ccggcgcctg cagcttgcgc ggcgggatcc gcagttcggc
     1741 aggctgggcg ggcgtggcgt tctgctgaac gccgggttgc gccaaagcgg cgccggacaa
     1801 gccccccgac aggctcaagg ccaaagcggc cagccagatg cgtttcatga cagtctcccc
     1861 gaatcccggt ttgggtgatt ttggcgcgac tatagcgcct taccagcgcg tcttaccaga
     1921 tagtggcaac cgcgctttcg aattgctcca gcgtgaactg gacatcggcg tcactgtgcg
     1981 ccgccgaaag cgaacattgc ttggtggcga tgggcacgaa gaacacgccg cgctggatca
     2041 gggcgcggcg cagcgccacg tcgcgggcga agtcatggcc ctggatgatg tcgtgcaggt
     2101 cggccggcgg cttttccatc agatagaagg aaaaggctga gccctggcgc gccacacagg
     2161 cggtgatgcc gcggcgggca aagatgtcca ggatgccggc ttccatcgcc gcgcccatcg
     2221 cttccatctt gggataaagc gtgtccttgt tggcgaccag gtaccgcact gtctcgatcg
     2281 ccgccgccac cgcgacggga tgaccgttat aggtgcccgc aacaaagggg cgacgcgaag
     2341 gatcggggtc gatgatggag tccatatact ccgctttgcc gcccaccacg gccagcggga
     2401 aaccgttggc caccgccttg ccatagacca ccaggtccgg catcacgccg cacacctggc
     2461 tgtaaccgcc caccgcatgg cgaaagcccg tcttcacttc atcgaacacc agcaggaagc
     2521 cgaattcgtc cgccagatcg cgcaagcctt ccagatagcc gggctggggc ttcaccaccc
     2581 cgatattctg cagcagcggc tcggtgatca gggcggcgac gggaaagcgg cggcagacat
     2641 agcgcaccga ttccagatcg ttgtagttca ccgcatgggt gaaatgggcc tgctggatag
     2701 tggtgccggc gcccaggggc ttcaggggat attcgcccgg cgagacgcgc gggccgatct
     2761 cggccaggct attgaagaca ttggtcgcca gttcgtcatg attgccgtta tagccgccct
     2821 gcatcacgat gatgtgcgaa cgccgcgtca cggcgcggcc gatgcggatg gccagcgagg
     2881 tcgcctcgct gccggtgttg agcaaggtga tcttttccac cgccgggaca ttctcgcaga
     2941 tcagttccgc cagccggcct tcggcaatgg agggtccggc gccgaacagg ctgtcgccac
     3001 tggtcagcgc cgccgccgcc gcgtcattca ccggcttgaa attatgcccc agaaaataag
     3061 gcgcgaagcc ggcatggtag tcgatatagc gcttgccttc gctgtcccac agataagcgc
     3121 cctcgccttt cacaaaggtg atggcgggat caatgctgcg attgaccgat gagatgccgc
     3181 cgggaatgta gcggcgattg tgc
//
LOCUS       DATMDK010000072         2644 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_39722,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000072 DATMDK010000000
VERSION     DATMDK010000072.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2644)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2644)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2644
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_39722"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(54..1316)
                     /locus_tag="VNN98_01390"
     CDS             complement(54..1316)
                     /locus_tag="VNN98_01390"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HWM60769.1"
                     /translation="MTAPPKVLSLPQLGAVVAGNALEFYDFLTFGFFAVQIGAVFFPG
                     HDATGRLLLTLATFGVGFLTRPLGGAVIGPLGDRLGRKPAMLFSFGLMGLSIVGLALT
                     PSYASIGWYAPLLVVLFRLLQGFALGGEVGPTTAFLMESAPLHRRGLYVSLQNATQYF
                     STLCAGLVGLALANWLSPQDLTAWGWRVAFLLGAAVVPFALIMRKNLPETLPQTVQAE
                     TQRQRLSRPQLWLGLLGLCTLASLTIATYTMNYMGTFGMHSLGIPASKAFGATVAVGV
                     CATAGALLGGFLSDRLGRKPVMIGGSLLLLLLGLPCFAVMSQVKSVFALLAGSGLMAV
                     ATGLYAPAILVGLSESLPTSLRAGSLGILYALAISCFGGSAQFVVTWLIDVTGSPLAP
                     AWYMSGAVLLGLAGMIGMRETAPIKLDR"
     gene            1483..1773
                     /locus_tag="VNN98_01395"
     CDS             1483..1773
                     /locus_tag="VNN98_01395"
                     /inference="COORDINATES: protein motif:HMM:NF022464.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2849 domain-containing protein"
                     /protein_id="HWM60770.1"
                     /translation="MLTANRLRDGDVLYRKGDGWVPMLADGEVYTDQASADAALAAAT
                     AELARNEVVAPYLFEVREVNGKIKPVKEREIIRAAGPTVHPHTGKQAGQINV"
     gene            1766..>2644
                     /locus_tag="VNN98_01400"
     CDS             1766..>2644
                     /locus_tag="VNN98_01400"
                     /EC_number="1.8.7.1"
                     /inference="COORDINATES: protein motif:HMM:NF013259.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0050311 - sulfite reductase (ferredoxin)
                     activity [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nitrite/sulfite reductase"
                     /protein_id="HWM60771.1"
                     /translation="MSSGGVQPNMYRYDEFDARFVSQRVEQFAGQVARRLSGELTEDQ
                     FKPLRLMNGLYLQLHAYMLRIAVPYGTLSSRQMRRLAHIARTYDKGFGHFTTRTNLQF
                     NWIKLVDVPAILRELAEVEMHCIQTSGNCIRNITADQFAGATAEEIEDPRPLAEIIRQ
                     WSSLHPEFVFLARKFKIAVGACEQDRAAMQYHDMAVQVVKNAQGRIGYKVLAGGGMGR
                     TPYIAHVMSEFVEREDILAYLEAVLRVYNQDSRRDNIHKQRIKILINTIGPEEMRKRV
                     AREFEEIKRTGILQLPR"
BASE COUNT          564 a          870 c          806 g          404 t
ORIGIN      
        1 cgctctgtct ctgctggaat ggtggctgct gcggcgctgg cacgaaagcg cgctcagcga
       61 tcgagcttga tcggcgccgt ctcgcgcatg ccgatcatcc cggccaggcc cagcagcacc
      121 gcccccgaca tgtaccaggc cggcgccagc ggcgagccgg taacatcgat cagccaggtg
      181 acgacaaact gcgccgaacc gccgaagcag gaaatcgcca gggcatagag gatgcccagc
      241 gacccggccc gcaaagaggt gggcaggctt tccgacaatc ccaccaggat ggcgggtgca
      301 tatagccccg tcgccaccgc catcaggccg gaccccgcca gcagcgcgaa cactgatttc
      361 acctggctca tcaccgcgaa gcagggcagt cccagcagca acagcagcag gctgccgccg
      421 atcatcaccg gcttgcggcc cagacggtcg ctcagaaatc cgcccagcag cgcgccggcg
      481 gtggcgcaca cgcccaccgc cacggtggca ccaaaggctt tggacgcggg tatgcccaag
      541 ctgtgcatgc cgaaggtgcc catataattc atggtgtagg tggcgatggt gagactggcc
      601 agcgtgcaaa gccccaacag gccaagccac aattgcggac gtgacaggcg ctggcgctgc
      661 gtttccgctt gcactgtttg cggcaatgtt tccggcaggt tcttgcgcat gatcaacgca
      721 aagggcacca ccgccgcgcc cagcaggaag gcaacgcgcc acccccaagc cgtcaggtcc
      781 tgcggcgaaa gccaattggc cagcgccaat cccaccagtc ccgcgcacaa agtggagaaa
      841 tactgggtgg cgttttgcag cgatacataa aggccgcggc gatgaagcgg cgcgctttcc
      901 atcaggaagg cagtggtggg tcccacctcc ccgcccagcg caaaaccctg cagcaagcga
      961 aacagcacca ccagcagcgg cgcataccag ccgatgctgg cataggaggg cgtcagcgcc
     1021 agccccacaa tactcagccc catcagcccg aacgaaaaca gcatggcggg cttgcggccc
     1081 aagcggtcgc ccagcggtcc gatcaccgcc ccgcccaacg gccgcgtcaa aaaaccgaca
     1141 ccgaaagtcg ccagggtcag cagcaggcgg ccggtggcgt catggccggg gaaaaacacc
     1201 gccccgatct ggacggcgaa aaaaccgaag gtgaggaagt cgtagaactc cagggcattg
     1261 ccggccacca cggcgccgag ctgcggcaag ctcaacactt tgggcggcgc ggtcacgaga
     1321 atcccctgtt cctcaggact atgcctgctt cccgccctac aataatacaa ttatttcatg
     1381 ttgttcacgc gtaactacat ctgcgacgtg ttgaagtctt gatttcgcag cccggaagtg
     1441 atctttcccg ccatcatggc gcgcgaaaac caaggttccc agatgctgac cgcgaaccgt
     1501 ctgcgcgatg gggacgttct ctatcgcaag ggcgatggct gggtgccgat gctggcggac
     1561 ggcgaggtct atacggacca ggccagcgcc gacgcagccc tggcggcagc caccgccgag
     1621 ttggcgcgca acgaggtcgt ggcgccctat ctgttcgagg tgcgcgaagt gaatggcaag
     1681 atcaagccgg tgaaggagcg cgagatcatc cgcgccgccg gtcccacggt gcatccccat
     1741 accggcaagc aggcgggcca gatcaatgtc tagtggcggc gtacaaccca acatgtatcg
     1801 ctatgacgag ttcgacgccc gctttgtcag ccagcgggtg gagcaattcg ccggccaggt
     1861 ggcgcgccgc ctgtcgggcg aattgaccga agaccagttc aagccgctgc ggttgatgaa
     1921 cggactgtat ctgcagctgc atgcttacat gctgcgcatc gccgtgccct acggcaccct
     1981 gtcgtcgcgc cagatgcgcc gcctcgccca tatcgcccgc acctatgaca agggcttcgg
     2041 ccatttcacc acccgcacca atctgcagtt caactggatc aagctggtgg acgtgcccgc
     2101 catcctgcgc gaactggccg aagtggagat gcattgcatc cagacctccg gcaattgcat
     2161 acgcaatatc accgcagacc agttcgccgg cgccacggct gaggaaatcg aagacccgcg
     2221 cccgctggcc gagatcatcc gccaatggtc gagtctgcat cccgaatttg tttttctggc
     2281 ccgcaagttc aagatcgcgg tgggggcctg cgagcaggac cgcgccgcga tgcagtatca
     2341 cgacatggcg gtgcaggtgg tgaagaacgc gcaagggcgc atcggctaca aggtgctggc
     2401 tggcggcggc atgggccgca cgccctacat cgcccatgtg atgagcgagt tcgtcgaacg
     2461 cgaggacatc ctcgcttatc tggaagcggt gctgcgggtc tacaaccagg acagccgccg
     2521 cgacaatatc cacaagcagc gcatcaagat cctgatcaac accatcgggc ccgaggaaat
     2581 gcgcaagcgc gtggcgcgcg agttcgagga aatcaagcgc accggcatcc tgcaattgcc
     2641 gcgg
//
LOCUS       DATMDK010000073         4298 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_504230,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000073 DATMDK010000000
VERSION     DATMDK010000073.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 4298)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4298)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4298
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_504230"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            366..611
                     /locus_tag="VNN98_01405"
     CDS             366..611
                     /locus_tag="VNN98_01405"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM60772.1"
                     /translation="MPPENNGKPPLSAAGWITLGVLLGFFGVSLWYAVKVWSAMAGVA
                     MSGWGWTFLGLGIVVTIGLGAGLMALVFYSSRHDMDR"
     gene            complement(614..1375)
                     /gene="cysQ"
                     /locus_tag="VNN98_01410"
     CDS             complement(614..1375)
                     /gene="cysQ"
                     /locus_tag="VNN98_01410"
                     /EC_number="3.1.3.7"
                     /inference="COORDINATES: protein motif:HMM:TIGR01331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008441 - 3'(2'),5'-bisphosphate
                     nucleotidase activity [Evidence IEA];
                     GO_process: GO:0006790 - sulfur compound metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3'(2'),5'-bisphosphate nucleotidase CysQ"
                     /protein_id="HWM60773.1"
                     /translation="MGATLSPHLQTLVRIAQAAGIVVMRHYEAGCDARVKADRSPVTD
                     ADEEAEKLILAGLAAAFPQVPVVAEEEAAAGRIVAVGSRFFLVDPVDGTKEFVKRGGE
                     FTVNIGEVVDGQPVSGVVFAPAIGRLFVGAMGAGAFEISGGATRVIAARVPDADGLVA
                     VSSRSHPDAKTDELLKTLTIKGHTNAGSSLKFCLVAAGEADIYPRAGQTMEWDTAAGH
                     AVLRAAGGKVTNWDGTPFVYGKPGFLNGPFIARGK"
     gene            1447..2061
                     /locus_tag="VNN98_01415"
     CDS             1447..2061
                     /locus_tag="VNN98_01415"
                     /inference="COORDINATES: protein motif:HMM:NF021595.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphotransferase family protein"
                     /protein_id="HWM60774.1"
                     /translation="MTEIEFAALLVSRVCHDLVGPLGAVVNGMEVLEDERDPGMRADA
                     IKLVTMSADQALARIQFMRIAFGAAGSAGAELDLGEIGRLITGLLEGGKIQLVWTVPR
                     LYWPKDWAKLLMNATLLAADCLPRGGLVTVEAGPDPLAPSFHIRAQGLNARVTEEMDR
                     AIKGEALNVDARHVQPFLTYKLSRTINAALTVMPLEGAVELMAG"
     gene            2294..2662
                     /locus_tag="VNN98_01420"
     CDS             2294..2662
                     /locus_tag="VNN98_01420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017978214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HWM60775.1"
                     /translation="MKHCLVVDDSRVIRTVARRILEELSYCVDEAEDGMTGLRACREK
                     MPDLIFLDWNLPSMKGVEFVKSVRGQQDGAHPVILFCTTESDPAEIASAMAAGANEYV
                     MKPFDGSVVRAKLTDIGVAV"
     gene            2672..3487
                     /locus_tag="VNN98_01425"
     CDS             2672..3487
                     /locus_tag="VNN98_01425"
                     /inference="COORDINATES: protein motif:HMM:NF013867.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0008983 - protein-glutamate
                     O-methyltransferase activity [Evidence IEA];
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_process: GO:0032259 - methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein-glutamate O-methyltransferase CheR"
                     /protein_id="HWM60776.1"
                     /translation="MAPDDFHFLARLLRRRSGLSLTLDKRALIGRRLAPVMRRFDFKD
                     TAALIAELRLGREALAEAVTEAMTVNESSFFRDPALFGNFAARVLPRLLAARHQDKRL
                     RIWSAACAAGQEAYSIAILLSEMGLTRQGWSIDLIATDLSGEAIRRAEAGRYAACEIE
                     RGLDARAMRYFRRDGTEWLVDAALRRMVTFRRFNLLDSFGWLDDLDIVFCRNVLMYFD
                     IATRLDVLERIADTLAPDGVLLLSENDTPERSGFQPDSPSIYIKSRAALLRAV"
     gene            complement(3484..>4298)
                     /locus_tag="VNN98_01430"
     CDS             complement(3484..>4298)
                     /locus_tag="VNN98_01430"
                     /inference="COORDINATES: protein motif:HMM:NF022457.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="Kdo hydroxylase family protein"
                     /protein_id="HWM60777.1"
                     /translation="LKAHAVSALERGAVLFFPSLAFALSDAEKIYLDPGVADGKAKNI
                     SLDPASGKMQASSLTGDKAQGLAAMMARFGSQAAGLVQELLPYRDVERARTSFRPVQV
                     KGRSYSKISDDRLLHIDAFPSRPMRGRRILRFFANVAPDGARRWNVGEPFEDFARTFL
                     PRVGPHWPGKSWLYDKLGVTHGRRSLYDELMLSLHDTGKRDSAFQRSSPHHAVEFPPG
                     CCWLVFTDQVLHAALGGEFALEQTFHLDVDQMAEPARAPVKVLERLSGKSLV"
BASE COUNT          724 a         1397 c         1373 g          804 t
ORIGIN      
        1 ggttcatatt cgcgctttcc cttcatgggg cgctcccgcg cctgaaacga atcatccgcc
       61 caaccgcggc gaatcttgac gcagattggg gcttttttat agcttgaagg cgcggccaag
      121 cgccttcaaa gcgcagagcc cgcccgctct gtggagcggc gcgcggcgcg cggtcaacgc
      181 ggccaagcgc cttcaaggcg cagagcccgc ccgctctgtg gagcggcgcg cggcgcgcgg
      241 tcaacgcggc caagcgcctt cgaggcgcag agcacgccgc tacgtggagc ggtgtgcggc
      301 acgcggtcaa ccagttgttg ggtgtcaccc gagaaatgat ttaggattgc ggcaggaaga
      361 tgaatatgcc cccggaaaac aacggaaaac caccgctttc ggccgccggc tggatcacct
      421 tgggcgtcct gctgggcttc ttcggcgtct cgctctggta tgccgtaaag gtctggagcg
      481 cgatggccgg tgtcgccatg agcggctggg gctggacctt cctggggctg gggatcgtgg
      541 tgaccatcgg cctgggtgcg gggcttatgg cgctggtttt ctattcatcc cgccacgaca
      601 tggaccgcta gggttatttg ccgcgcgcga taaacggccc gttgagaaag cccggcttgc
      661 cgtagacaaa tggcgtgccg tcccagttcg tcaccttgcc gcctgccgcc cgcagcacgg
      721 catggcccgc cgcggtgtcc cattccatgg tctgtccggc gcggggatag atgtcggcct
      781 cgcccgccgc caccaagcag aacttcagcg acgagccggc attggtatga cctttgatcg
      841 taagggtttt cagcagctcg tcggtcttgg catcgggatg cgagcggctg ctcaccgcca
      901 ccagcccgtc cgcgtcgggc acgcgcgccg cgatgacgcg cgttgcacct ccagaaatct
      961 caaaggcgcc tgcgcccatc gcgcccacga acagtcgccc gatggcgggt gcgaacacca
     1021 cgccgctgac cggctggccg tccaccactt cgccgatatt gacggtgaac tcgccgccgc
     1081 gtttgacgaa ttccttggtg ccgtccaccg ggtccaccag gaagaagcgc gaccccaccg
     1141 ccacgatgcg tcccgccgcg gcctcttctt ccgccaccac cggtacctgc ggaaaggcag
     1201 cggccagtcc ggccaggatc agtttctcgg cttcctcatc ggcatcggtc accggcgaac
     1261 ggtcggcctt tacccttgca tcgcagccgg cctcgtaatg gcgcatcacc acgatgcccg
     1321 ccgcctgggc aatgcggaca agggtctgca gatgggggga gagcgttgca cccatgttaa
     1381 gaattcctta agacgcgcgg gccaattaac caattgctaa ccagtggggc cgcattgagt
     1441 tcgtccatga ctgagatcga atttgccgct ttgttggtca gccgcgtctg ccacgacctt
     1501 gtcgggcctt tgggcgccgt ggtcaacggt atggaagtgc tggaagacga gcgcgacccc
     1561 ggcatgcggg ctgacgccat caagctggtg accatgagcg ccgaccaggc gctggcccgc
     1621 atccaattca tgcgcatcgc ctttggcgcc gccggttcgg ccggggcgga actggacctg
     1681 ggcgagatcg gccggctgat caccggcctt ttggaaggcg ggaagatcca gctggtgtgg
     1741 actgtgcccc ggctttactg gcccaaggac tgggccaagc tgctgatgaa cgccaccctg
     1801 ctggcggccg actgcctgcc gcgcggcgga ttggtgacgg tcgaagccgg ccctgatccg
     1861 ctggcgccct ccttccatat tcgcgcccag gggctcaatg cccgcgtcac cgaggaaatg
     1921 gaccgcgcca tcaagggcga ggccctgaat gtggacgcac gccatgtcca gcccttcctg
     1981 acctacaagc tgtcgcgcac catcaatgcc gccctgaccg tgatgccgct ggagggcgcc
     2041 gtcgaactga tggccgggtg accgcttggt cttttgtccc ctgagttcgt cgctcgtcgc
     2101 tcatggactc aagtgtccac atcgctcctc gctcctgctc agggaacaaa atcccggcgc
     2161 ggtcccgtcc ggggtaagta tatatttacc gtaacgggcg tagattttcc tcacaaagcc
     2221 gccgatttgg ggactttgct tttatttagg gtcgctccgg ctctcgccta cgctctgggg
     2281 aaatattctg cccatgaaac attgcctggt cgtggatgac agccgcgtga tccgcacggt
     2341 cgcgcgccgc atcctggaag aactgtccta ttgcgtggac gaagccgaag acggcatgac
     2401 gggcctgcgc gcctgccgcg aaaagatgcc cgatctgatt ttcctggact ggaacctgcc
     2461 gtccatgaag ggcgtggaat tcgtcaaaag cgtgcgtggc cagcaggacg gcgcccatcc
     2521 cgtcatcctg ttctgcacca ccgaaagcga tcccgccgaa attgccagcg ccatggcggc
     2581 tggcgccaat gaatatgtga tgaaaccgtt cgatggcagc gtcgtgcgcg ccaagctcac
     2641 cgatatcggt gtcgcagtct gaggcgtggg aatggcgccg gacgacttcc actttctcgc
     2701 ccgcctgctg cgccgccgct ccggcctgtc gctgaccctg gacaagcggg ccttgatcgg
     2761 gcgccggctg gccccggtca tgcgccgctt cgatttcaag gatactgcgg cgctgatcgc
     2821 tgaactgcgg ctgggccgcg aggccttggc cgaggcggtg accgaggcca tgaccgtcaa
     2881 cgagagcagt ttttttcgcg accccgcttt gttcgggaat tttgccgcgc gggtgctgcc
     2941 gcgcctgctg gcggcgcgcc accaggacaa gcggctgcgc atctggtcgg cggcttgcgc
     3001 cgcgggccag gaagcctatt ccatcgccat cctgctttcg gagatgggcc tgacgcgcca
     3061 gggctggagc atcgatctga ttgccaccga cttgtcgggc gaagcgatcc ggcgcgccga
     3121 agccggccgc tatgcggcct gcgagatcga acgcggactg gacgcccgtg ccatgcgcta
     3181 tttccgccgc gacgggacgg aatggctggt ggacgccgcc ttgcgccgca tggtgacctt
     3241 ccgccgcttc aacctgctgg attccttcgg ctggctggac gatttggaca tcgtgttctg
     3301 ccgcaatgtg ctgatgtatt tcgacatcgc cacgcggctg gatgtgttgg agcgtatcgc
     3361 tgacaccctg gcgccggatg gcgtcttgct gctgagcgaa aatgatacgc cggaacgctc
     3421 cggcttccag cccgacagtc ccagcattta catcaagtcc cgcgccgcgc tgttgcgcgc
     3481 tgtttaaacc aagctctttc cacttagccg ttccaacacc ttgaccggcg cgcgcgccgg
     3541 ctcggccatc tggtcgacat ccagatgaaa agtctgctcc agagcgaatt ctccgcccag
     3601 ggcggcatgc agtacctggt cggtgaacac cagccagcag cagccgggcg gaaattccac
     3661 ggcgtgatgg gggctgctgc gctggaaagc ggaatcccgc ttgcccgtgt catgcagcga
     3721 cagcatcagt tcgtcataca ggctgcgccg gccatgggtg acacccagct tgtcgtacaa
     3781 ccaggatttg ccgggccaat gcggccccac ccgcggcagg aatgttcgcg caaaatcttc
     3841 aaacggctcg ccgacgttcc agcggcgcgc gccatcgggc gcgacattgg cgaagaagcg
     3901 caggatgcgc cgcccccgca tggggcggga gggaaaggcg tcgatgtgca gcagccggtc
     3961 gtcgctgatt ttggaatagg accggccctt gacctgtacc gggcggaacg aagtgcgggc
     4021 gcgctcgaca tcgcgatagg gcagcagctc ctgcaccagg ccggccgcct ggctgccgaa
     4081 acgcgccatc atcgccgcca agccctgcgc cttgtcgccg gtcagcgaac tggcctgcat
     4141 tttaccgctg gcgggatcca gcgaaatgtt cttggccttg ccgtcggcca cgccgggatc
     4201 gaggtatatt ttttccgcgt ccgacaaggc gaaggcgagg ctggggaaaa acagcaccgc
     4261 gccgcgctct agggcggaga cggcgtgcgc cttcagcg
//
LOCUS       DATMDK010000074         3562 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_281207,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000074 DATMDK010000000
VERSION     DATMDK010000074.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3562)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3562)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3562
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_281207"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1918)
                     /locus_tag="VNN98_01435"
     CDS             complement(<1..1918)
                     /locus_tag="VNN98_01435"
                     /EC_number="2.3.3.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004645449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004474 - malate synthase activity
                     [Evidence IEA];
                     GO_process: GO:0006097 - glyoxylate cycle [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="malate synthase G"
                     /protein_id="HWM60778.1"
                     /translation="MPDRIEKHGLKVSPALFNFIEKEALPGSGVDADKFWAGFAALAV
                     ELMPQNRALLATRDRLQTAIDGWHKDNPARPVDALDYTAFLREIGYLQPEGADFQIGT
                     ANVDPEIAEVAGPQLVVPLTNARFALNAANARWGSLYDALYGTDAISQDGELAAGKGY
                     NPKRGEKVIVFARDFLDQTAPLADGSHKDTTGYFVTNGALMPPLKNPSQYKGYVGDSD
                     LPSVILLAHNGLHIEIHFDRSTPIGKNDKSGISDVVLESAITTIMDCEDSIAAVDAQD
                     KVEAYRNWLGLMNGTLTASFEKGGKTLQRSANPDREYTTSYNKKFFLPGRSLLFIRNV
                     GHLMTSDAILLADGSEIGEGLMDGVVTSLIGLHDIRGKRRNSRKGSIYIVKPKMHGPA
                     EVAFTSTLFDGVEDLLGLERNTIKMGVMDEERRTSTNLKECIRAAKDRIVFINTGFLD
                     RTGDEMHTSMQAGPMIRKGEMKTSKWLSAYEDQNVDIGLACGFQGKAQIGKGMWAMPD
                     RMADMLKAKIGHPMAGASCAWVPSPTAATLHALHYHQVNVKARQDELKSRTRAKLADI
                     LTIPLADRPNWSPDEVQQELDNNAQGILGYVVRWVDQGVGCSKVPDIHNVGLMEDRAT
                     LRISSQHLANWLHQG"
     gene            complement(2108..>3562)
                     /locus_tag="VNN98_01440"
     CDS             complement(2108..>3562)
                     /locus_tag="VNN98_01440"
                     /inference="COORDINATES: protein motif:HMM:TIGR00795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-lactate permease"
                     /protein_id="HWM60779.1"
                     /translation="VDGFCKIGWIILNVLFLYRLTVEKGLFAVFQHSLGRITADRRLQ
                     ILLIAYCFGAFFEGAAGFGTPVAVVSAMLMGLGFSPLTAAAMALFANTATVAFGAIGA
                     PIQGLVASSGIDAMTLGKAIGIQSVPFSFMMPFFMLWMFCGWKKTLAVLPAILVAALS
                     FSIPQFIFSYYVSPFIVDVAAGGISLACMVLFLRVWKPAEIMTNPAMRFPDDSNSEVK
                     IPPPLEALPTAQQVIRAWTPWIILCVVLAFWATDYWKHLAAILFAPKFPIPGLDKMIM
                     AMPPVVRAPTAQAGAFIFSFLTYSGTGILLSGIVAGLLMGFSPVALVKNWFKTIYAVR
                     FALITITLMLSLATLTGSSGIQGTLGLAFAGTGALFPFFSAVLGWLGVAATGSDTSAN
                     VLFGGLQVVAANTAHFNPVLMAAANSTGGCMGKIIAISSIVIASAATGWTGSEGKILR
                     FVFPAAVFWGILVGLLVMLQAYVIPWTVPVLPGM"
BASE COUNT          705 a         1068 c         1136 g          653 t
ORIGIN      
        1 cgccctgatg cagccagttc gccagatgct ggctggagat gcgcaaggtg gcgcggtctt
       61 ccatcaggcc cacattgtgg atgtccggca ccttggagca gccgacgccc tggtctaccc
      121 agcgcaccac atagcccagg atgccttgcg cgttgttgtc cagttcctgc tgtacttcgt
      181 ccggggacca gttgggccgg tcggccaagg gaatggtgag aatgtccgcc agtttggcgc
      241 gcgtccgcga tttcagttca tcctgccgcg ccttcacgtt gacctggtga taatgcagcg
      301 cgtgcaaggt ggcggcggtg ggtgagggca cccaagcgca ggaggcgccc gccatcggat
      361 ggccgatctt ggccttcagc atgtcggcca ttctgtcggg catggcccac atacccttgc
      421 cgatctgcgc cttgccctgg aaaccgcaag ccaggccgat atcgacattc tggtcttcat
      481 aagcgctgag ccatttggat gtcttcatct cgcccttgcg gatcatcggg ccggcctgca
      541 tcgaggtgtg catctcatcg ccggtgcggt ccagaaagcc ggtattaata aagacgatgc
      601 ggtccttggc ggcgcggatg cattccttca gattggtgga ggtgcggcgt tcctcgtcca
      661 tcacccccat cttgatggtg ttgcgctcca gtcccagcaa gtcctccacg ccgtcgaaca
      721 atgtgctggt gaaggccact tcggcgggac catgcatctt gggcttgacg atatagatgc
      781 tgcccttgcg actgttgcgg cgcttcccgc gaatgtcatg caggccgatc aggctggtga
      841 caacgccgtc catcaggccc tcgccgatct cgctgccgtc ggcgagcagg atggcgtcgc
      901 tggtcatcag atggccgaca ttgcggatga acaacagact gcggccgggc agaaaaaatt
      961 tcttgttata gctcgtggta tattcccggt ccggattggc cgacctttgc agagtcttac
     1021 cgcctttttc gaagctggcg gtcaaggtgc cattcatcaa tcccagccaa ttgcgatagg
     1081 cttcgacctt gtcctgcgca tccacggccg cgatggaatc ttcgcagtcc atgatggtgg
     1141 tgatagccga ttccagcacc acgtcgctga taccggactt gtcattcttc ccgatgggcg
     1201 tactgcggtc gaagtgaatc tcgatatgca gaccgttgtg agccagcaat atgacggacg
     1261 gtaggtcaga gtcgccaaca tagcctttgt actgcgaggg attcttcagc ggcggcataa
     1321 gcgcgccgtt ggtaacgaaa taacctgtcg tgtccttgtg cgagccatcc gccagtggcg
     1381 ctgtctggtc gagaaaatcg cgggcgaaga cgatgacttt ttcgccgcgc ttgggattgt
     1441 agcccttgcc tgccgccagt tcgccgtctt gcgaaatcgc atcggtgccg taaagcgcgt
     1501 cgtataagct tccccagcgg gcattggcgg cgttgagcgc aaagcgcgca ttggtcagcg
     1561 gcaccaccag ttgcgggcct gccacctcgg cgatttcggg gtccacattc gccgtgccga
     1621 tttgaaagtc cgcgccttcg ggctgcagat agccgatctc tctcaggaaa gcggtataat
     1681 ccagcgcatc gaccggcctg gcggggttgt ccttgtgcca gccgtcaatc gcggtctgca
     1741 accggtcgcg cgtcgccagc aaggcccggt tctgcggcat caactctacc gccagcgcgg
     1801 caaagcccgc ccagaatttg tccgcgtcca cgccgctgcc gggcagggct tccttttcga
     1861 tgaagttgaa aagtgcaggg ctgactttca gcccgtgttt ttcgattctg tccggcatgg
     1921 cgcgcttctt ctgtgggaga aggcctcacg gtagagcgcc cggcggcgag ggtcaaaatg
     1981 aaaagggtcc ggatggcggg gcaaagcccg gccatctgga cgccgagcgt ggactagcga
     2041 cagcgtagag tccacgcgaa ggcaggcccg ttagcgtgcg gcctttgtca tgcaaaacca
     2101 cgatttgtca catgccggga aggaccggca ccgtccaggg aatgacatag gcctgcagca
     2161 tcaccagcag gccgaccagg atgccccaga agaccgcggc cgggaagacg aagcgcagga
     2221 tcttgccttc gctgccggtc cagccggtgg ccgccgaggc gatcacgatg gaggagatcg
     2281 caatgatctt gcccatgcag ccgccggtgg aattggcggc tgccatcagc accgggttga
     2341 agtgcgccgt attggccgcc accacctgca agccgccgaa caagacgttg gcggaggtgt
     2401 ccgaacccgt ggccgccacg cccagccagc ccagcaccgc gctgaagaag gggaagagtg
     2461 cgccggtgcc ggcaaaggcc aggcccaagg tgccctggat gcctgaactg ccggtcaagg
     2521 tggcaagcga cagcatcaag gtgatggtga tcagggcgaa gcgcacggcg tagatggtct
     2581 tgaaccagtt cttcaccagc gccacgggcg agaagcccat cagcaagccc gcaacgatgc
     2641 ccgaaagcag aatgccggtc cctgaataag tgaggaagga gaaaatgaag gcgccggcct
     2701 gcgctgtggg cgcgcgcacc acgggcggca ttgccatgat catcttgtcc aggccgggga
     2761 tggggaactt cggcgcaaac aagatcgcgg cgaggtgctt ccaataatcc gtggcccaga
     2821 aggccagcac gacgcagagg ataatccagg gcgtccaggc cctgatcacc tgctgggcgg
     2881 tcggcaaggc ttccagcggc ggcggaattt tgacttcgct attgctgtcg tcgggaaagc
     2941 gcatggcggg attggtcatg atttccgccg gcttccagac ccgcaggaac aaaaccatgc
     3001 aagccagcga aatgccgccc gccgccacgt ccacgatgaa ggggctgaca tagtaggaga
     3061 agatgaattg cgggatggag aaggacagcg ccgccaccag gatcgccggc agcaccgcca
     3121 gcgtcttctt ccagccgcag aacatccaca gcatgaagaa cggcatcatg aacgagaagg
     3181 gcaccgactg gatgccgatc gccttgccca gggtcatggc gtcaatgccg gaggaggcca
     3241 ccaggccctg gatcggcgcg ccgatggcgc cgaaggccac cgtggcggtg ttggcgaaca
     3301 gggccatcgc cgcggcggtg aggggggaga agcccaggcc catcagcatg gcggatacca
     3361 ccgccaccgg agtgccgaag ccggccgcac cttcgaagaa ggcgccgaag caataggcga
     3421 tcagcaggat ctgaagccgc cggtcggcgg tgatgcggcc cagcgagtgc tggaacacgg
     3481 cgaacaggcc cttttcaacg gtcaggcggt agaggaacag cacgttcagg atgatccagc
     3541 cgatcttgca gaatccgtcc ac
//
LOCUS       DATMDK010000075         7340 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2553119,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000075 DATMDK010000000
VERSION     DATMDK010000075.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 7340)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7340)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7340
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2553119"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..532
                     /locus_tag="VNN98_01445"
     CDS             <1..532
                     /locus_tag="VNN98_01445"
                     /inference="COORDINATES: protein motif:HMM:NF044908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM60780.1"
                     /translation="ESGFEHQSQMPVVPDPEGLEDDQQVLLRNPELKPEMREWVARER
                     PFETRSVLGRGPFGNLGDRPARPAVDHIWLKTRGALPDDANIHRALLAFVSDMSLLDT
                     SLLPHGKSIFSNVQVASLDHAMWFHRPFRADEWLLYAQDSPSASGARGFNRGAIYRRD
                     GTLVASVAQEGLIRPR"
     gene            complement(611..1237)
                     /locus_tag="VNN98_01450"
     CDS             complement(611..1237)
                     /locus_tag="VNN98_01450"
                     /inference="COORDINATES: protein motif:HMM:NF019428.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TadE/TadG family type IV pilus assembly protein"
                     /protein_id="HWM60781.1"
                     /translation="MLLRAFRKAGASAPARFARLAKKGALRARAGATNNDGVAAVEFA
                     LILPLMITMFFGVVEVTQALLCRADVSVMASTAADLISRESAATNTDLANIYAAAGTI
                     LYPYTGTPSIRITSVIYDPSTQSTTSGKFDWSCTQAGSGMLPAQSTTTVTLPTAMMPP
                     NGSVIIADVAYGYASPTTKMFVGPITMTNSFWTKPRRVAQITKPASCT"
     gene            complement(1237..1833)
                     /locus_tag="VNN98_01455"
     CDS             complement(1237..1833)
                     /locus_tag="VNN98_01455"
                     /inference="COORDINATES: protein motif:HMM:NF019428.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TadE/TadG family type IV pilus assembly protein"
                     /protein_id="HWM60782.1"
                     /translation="MTIKARCKNLCRRLRTDADKGSAAVEFAMIAPIFFVLLMGTMEA
                     GIIFFAQSTLQNAVNDTARLVRTGQTACYTKDAGNNCVPMTAADFQTQLCSEVSVLLQ
                     GCTTGSLQFDVNAYPAGFKNASNASPLDPTNKTLPTLNAFNVGNACDVVLVRAFYKWP
                     VLVPGLDYFLVNMADNNHLLATAAAFRNEPFNNNAAGC"
     gene            2084..3790
                     /locus_tag="VNN98_01460"
     CDS             2084..3790
                     /locus_tag="VNN98_01460"
                     /inference="COORDINATES: protein motif:HMM:NF024792.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pilus assembly protein TadG-related protein"
                     /protein_id="HWM60783.1"
                     /translation="MGTKMKLIAAKARAFLREKRGNVAMIFAISIIPLTLAAGAGLDF
                     ARAMLVRQQMAEALDAAALAVGSTAGLDQEHAKTMAQAYFDANYTVDKIAFGSPVVQP
                     FTYTNADGAVTIIVNDAMPTMLMQLAGIISMPVSASSTVVWGQTKLWVGLVLDNSGSM
                     CEPEGQPCLNDPDTNSKIYQLKSATNQMLTSLKGVSATAGDVQVAIVPFNREVDVGIG
                     NVSASWIYWGFWEAEPPNALLNNVTDLQGPNDSCPWSTGTQGYTCQTSGTNGASTTGS
                     ITSGGLICPSMDNGKVNTERNVHYYNGCYTSVATGATKQVSSGSFATCSGSGYANCSC
                     SGSGNSKICSTKYYKHTWTPNAHSSWGGCITDRAQDYDIANTLPSGSDTTGFPADNPA
                     NPVDSGGVSVSPSYYCMYGNVTPLEYDWTDLATRVNGMQAKGSTNQAIGVAHAWQALT
                     PGNPYAAPSVPPNTARYIILFSDGLNTQDRWWGDGSTEGTTQDGYIDDREKKVCTAAK
                     ADGVVIYTVFMDVGGSHGDSAPLKNCASDTSKYYDLTAASQIATAFADITRQITNVRV
                     SH"
     gene            complement(3982..4458)
                     /locus_tag="VNN98_01465"
     CDS             complement(3982..4458)
                     /locus_tag="VNN98_01465"
                     /inference="COORDINATES: protein motif:HMM:NF025014.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pilus assembly protein N-terminal
                     domain-containing protein"
                     /protein_id="HWM60784.1"
                     /translation="MRRALFAAALLAATAPAYAAGKNDAVALALDEVHTLTFRAPVAT
                     VYVGNPAIADVTMIDSRHAFVQGKGYGRTNIVALNRDNVQVFNTHVTVTGNDDGGTVT
                     LNRGAQRVTLNCAGGRCEPTPMPGDDQKAYDAANAQSTTHQSAARGAAVAAAEVKN"
     gene            4597..5853
                     /locus_tag="VNN98_01470"
     CDS             4597..5853
                     /locus_tag="VNN98_01470"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF021134.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 87 protein"
                     /protein_id="HWM60785.1"
                     /translation="MKKIVLLLRSGDFLTRARMTLWAAGLVLGYVLCGVFLGLTAHGL
                     NDYTGRPLGTDFSNVYAAGVAALHGDATAPFDILRQQQTEQAIFGAATQLYGWHYPPF
                     FLLVAAALARLPYIPALILWQAATLMLYLGSVWLLLRKSAAPFLSQDRLWPLLALGFT
                     AVFVNVTHGQNGFLTAALFASGLALLDERPVVAGVLFGLLCYKPQFAVVIPLVLAATG
                     HWRTFGAAAATVLAAGGAVTMIFGAEIWPAFMASAHFTRTVVLEQGNTGFYKMQSVFA
                     GIRMWGGGVTLAYGAQAIAAVTVLYGLVRIWRGNIAIGYKGAALCLAALLVTPYSMDY
                     DLMLLAPAIVLLIAEGTARGFKNYERLLLTVLWVVPAIVRNVAHYTIIPLAIPAMVFC
                     LGSIYLRCGARGLSAASGPQPMGMMP"
     gene            6106..6279
                     /locus_tag="VNN98_01475"
     CDS             6106..6279
                     /locus_tag="VNN98_01475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018250824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Flp family type IVb pilin"
                     /protein_id="HWM60786.1"
                     /translation="MNLISRFVRDESGATAIEYGLIAALIAVVIITAVTAVGTQLSSI
                     FNVVQTKLGAANP"
     gene            6355..6864
                     /locus_tag="VNN98_01480"
     CDS             6355..6864
                     /locus_tag="VNN98_01480"
                     /EC_number="3.4.23.43"
                     /inference="COORDINATES: protein motif:HMM:NF013632.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004190 - aspartic-type endopeptidase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin peptidase"
                     /protein_id="HWM60787.1"
                     /translation="MIAEILVIVALPLLLAIAAGWDIASFTIPNFLSLALLAAFALFA
                     VAAGLTLTSIGWHLLAGLLGLSIGFTLFALGYIGGGDAKLFAAVVLWLGFKDLLPYAL
                     LASLFGGVLTLGIVLLRRCPLPDVLARQGWIVKLHDARSGVPYGVALAAGAFILLPST
                     EIFRLAAAA"
     gene            7047..>7340
                     /locus_tag="VNN98_01485"
     CDS             7047..>7340
                     /locus_tag="VNN98_01485"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM60788.1"
                     /translation="MNTQRLIVLGIALVAAGGAAFLVRGMLGGGTPAVQAKAAPAIAM
                     SEVLVANANLTPGQALSVEQVRWEKWPTGSVDPSFITHEAAGSEEQAVKGTVVR"
BASE COUNT         1367 a         2187 c         2248 g         1538 t
ORIGIN      
        1 cgaaagcggc tttgagcatc aatcccagat gccggtggtg ccggatccgg aagggttgga
       61 agacgaccag caggtgctgc tgcgcaatcc cgaactgaag cctgagatgc gcgaatgggt
      121 ggcgcgcgaa cgcccgttcg agacgcgctc ggttctgggg cgcggcccct ttggaaattt
      181 gggtgatcgc ccggcgcggc cggcagtgga tcacatctgg ctgaagaccc gcggcgcctt
      241 gccggacgat gccaatatcc atcgcgccct gctggccttt gtctccgaca tgtcgctgct
      301 ggacacctca ctcttgccgc acggcaaaag catcttctcc aatgtgcagg tggcaagcct
      361 ggatcatgcc atgtggtttc accgcccgtt ccgcgccgac gaatggctgc tgtatgccca
      421 ggacagtcct tcggcctcgg gcgcgcgcgg cttcaaccgt ggcgcgatct atcggcgcga
      481 cggcacgctg gtcgcgtccg tggcgcagga agggcttatt cgtccgcgct gatcgcgcgt
      541 gcgcgcgctt ttcataactg ggcgcatccg cgcgctcttt ttagttgggc gcatctgcgc
      601 ccggtgctga tcaggtgcag gaagcgggtt tggtgatctg tgccacccgg cgcggcttgg
      661 tccagaaact gttggtcatg gtgatcggcc cgacgaacat cttggtggtg ggcgaagcat
      721 agccgtaagc cacgtcggcg atgattacgc tgccgttcgg cggcatcatc gccgtcggca
      781 aggtcacggt ggtggtgctc tgggccggca acatgccgga gccggcttgt gtgcaggacc
      841 agtcaaactt gccggacgtc gtactctggg tgctgggatc atagatcacg ctggtgatgc
      901 ggatgctcgg ggtgcccgtg tagggataga ggatcgtgcc ggctgccgca tagatattgg
      961 cgaggtcggt gttggttgcc gcgctttccc gcgaaatcaa gtcggcggcg gtgctggcca
     1021 tcaccgacac atcagcgcgg cacagcagcg cctgggtgac ttccaccaca ccgaaaaaca
     1081 tggtgatcat cagcggcagt atcagggcga attccaccgc ggcgacgccg tcattattgg
     1141 tcgctccggc ccgggcgcga agcgctcctt tttttgccag gcgcgcgaag cgcgctgggg
     1201 ccgacgctcc tgctttgcga aacgcgcgca gcagcatcag cagcctgccg cattgttgtt
     1261 gaaaggctcg ttgcggaatg ccgccgccgt ggccagcagg tgattgttgt ccgccatgtt
     1321 gaccaggaaa taatccaggc cgggcacgag caccggccat ttgtaaaagg cgcgcaccag
     1381 caccacgtcg caggcgttgc cgacattgaa ggcgttaagt gtcggcaggg tcttgttggt
     1441 ggggtccagc ggcgaggcgt tgctggcgtt tttgaagccg gcgggatagg cgttgacgtc
     1501 gaactgcagg ctgcccgtgg tgcagccctg aagcaggacg gaaacttcgc tgcacagctg
     1561 agtttggaag tcggcggcgg tcatgggcac gcaattgttg ccagcgtcct tggtgtaaca
     1621 ggcggtctgg ccggtgcgca ccaggcgcgc cgtgtcgttc accgcgtttt gcagcgtgga
     1681 ttgggcgaag aatatgatgc ccgcttccat cgtgcccatc aaaaggacga agaagatcgg
     1741 cgcgatcatg gcgaattcca ccgccgccga acctttgtcg gcatcggtac gcaggcggcg
     1801 gcaaaggttt ttgcaacgcg ctttgatggt cacggttaag cctcttcgtc cgccattttt
     1861 aaggacaggt gcgctcaaaa cgaagacaaa caggctttct tgctcaacag agggttaagc
     1921 gcgctgttac aagattatcc ggaaataccg cattttaatc gtttgttcac cagcgttaac
     1981 agcgcggtct attttattaa gggttgcgtt accagcattt gcgaaagcaa cagcatcttc
     2041 actgttttgc gccgaaactg gcggccgagg gattgggctg gccatgggca ccaagatgaa
     2101 gctgattgcc gcgaaggcgc gcgcttttct gcgagagaag cgcggcaacg tcgcgatgat
     2161 attcgccatt tcgattatcc cgcttaccct cgccgcgggc gctgggctgg atttcgcgcg
     2221 cgccatgctg gtgcgccagc agatggccga agccctggat gccgccgctt tggcggtcgg
     2281 ttccaccgcc ggactcgatc aggaacacgc caaaaccatg gcgcaagctt atttcgatgc
     2341 caactacacg gtggacaaga tcgccttcgg atcgccggtg gttcagccat tcacttatac
     2401 caacgcggat ggcgcagtca cgatcatcgt caacgatgcg atgcccacca tgctgatgca
     2461 acttgcgggc atcatttcga tgccagtgtc cgcatcctcg accgtggtgt ggggccagac
     2521 caaattgtgg gtggggctgg tgctggataa ttccggctcg atgtgcgaac cggaaggtca
     2581 gccctgtctc aacgaccccg acaccaatag caagatttac caactcaaat cggccaccaa
     2641 ccagatgctg accagcttga agggggtctc tgcgacagcg ggcgatgtgc aagtcgcgat
     2701 cgtgccgttc aaccgcgagg tggatgtcgg cataggcaat gtcagcgcca gctggatcta
     2761 ttggggtttc tgggaggccg agccacccaa tgcccttctc aacaacgtta ccgaccttca
     2821 gggtcccaac gatagttgcc cgtggagtac cggtacccaa ggctatacct gtcagaccag
     2881 cggcaccaac ggcgcctcca ccactggatc gattacctcc ggcgggttga tttgccccag
     2941 catggacaac ggcaaggtca acaccgagcg caatgttcac tattacaacg gctgctatac
     3001 gagcgtagcg acgggagcca ccaagcaggt ttccagcggc agttttgcga cctgcagcgg
     3061 tagcggctac gccaattgca gctgttccgg cagcggcaac tcaaagatat gcagcaccaa
     3121 atattacaag catacctgga cgcccaacgc gcacagcagt tggggcggtt gcatcaccga
     3181 ccgcgctcag gactacgaca tcgccaacac gctaccctcg ggaagcgata ccaccggctt
     3241 tcctgccgac aatcccgcca atcctgtcga ttccggcggc gtcagcgtca gtcccagtta
     3301 ttattgcatg tacggcaatg tcactccgct ggaatatgac tggacagatc tcgccacacg
     3361 ggtcaacggc atgcaggcca aaggctccac caatcaggcg atcggggtgg cacatgcctg
     3421 gcaggccctg actcccggca acccctatgc cgcaccgtca gtgccgccca acaccgcccg
     3481 ctacatcatc ctgttcagcg acggtctcaa cacccaagac cgctggtggg gcgacggctc
     3541 gaccgaaggc accacccagg acggctacat agacgatcgc gagaaaaagg tgtgcaccgc
     3601 cgccaaggca gacggcgtcg tcatctatac cgtcttcatg gatgtcggcg gctcgcatgg
     3661 cgattccgct ccgctgaaga attgcgccag tgatacttcc aaatattacg atctgaccgc
     3721 ggcgagccag atcgccaccg cctttgccga catcactaga cagatcacca acgtgcgcgt
     3781 gagccattag tgaagatcgc gctcgcgtca aacgcgacgg tgtgggagtg attttcggta
     3841 cccgctatat gccgggcgga cgcggcccag atggcctatc cgttgctgca aagtgatgcc
     3901 gccatacatg gcggcattgc ggccgaacgc gcagcctgag ccgcgcaatt cctgcccgca
     3961 ccttgtcagg gaatcagttc ttcagttctt gacttcggcg gcggcaacgg ccgcgccgcg
     4021 tgcagcgctc tgatgcgtcg tcgactgcgc gttggcggca tcataggctt tctggtcgtc
     4081 acccggcatc ggcgtcggct cacagcgccc gccggcgcag ttcaaggtca cgcgctgggc
     4141 gccgcggttg agggtcaccg tgccgccgtc gtcattgccg gtaacggtga cgtgggtgtt
     4201 gaagacctgc acattgtcgc ggttcagcgc cacgatattg gtgcggccat agcccttgcc
     4261 ctgcacaaag gcgtgacggg agtcgatcat ggtgacgtcg gcgatggcgg gattgccgac
     4321 atagacggtg gccacaggcg cgcggaaggt gagggtatgg acctcgtcca gcgccagcgc
     4381 gacagcgtcg ttcttgcccg cggcataagc aggtgcggtg gcggcaagca gggcggcagc
     4441 gaaaagggcg cggcgcatgg cggactccgg aaaatattcc gtcttgagac taggccggcg
     4501 ccgtaaaaga agccttaagc cttgccggta tgccccacaa ataaccaatc cttaagcgca
     4561 tactgccatt cttgcgcaaa ccttacacag cgccccatga agaaaattgt cctcctgttg
     4621 cgcagtggcg attttctgac acgcgcgcgt atgacgctct gggcggccgg acttgttctg
     4681 ggatatgtcc tttgcggcgt gtttctcggc ctcacagcgc atggcttgaa cgattatacg
     4741 ggccggccgt tgggaacgga tttctcaaat gtctatgcgg cgggcgtggc agcccttcac
     4801 ggcgacgcca ccgcgccgtt cgatattctt cgccagcagc aaaccgagca ggccatattc
     4861 ggtgcggcga cgcagcttta tggctggcat tatccgccct tcttcctgct ggtcgccgca
     4921 gcgctggccc ggctgcctta tattcccgcg ctgatcctct ggcaggccgc tactctgatg
     4981 ctttacctgg gctcggtctg gctgctgctg cgcaaaagcg ccgcgccgtt tctgtcccag
     5041 gatcggcttt ggccgcttct ggcgctggga tttaccgctg tctttgtgaa cgtcacacat
     5101 gggcagaacg gattcctgac ggccgctctg ttcgcatccg gcttggcgct gctcgacgag
     5161 cgcccggttg ttgcgggggt gctgttcggc ctcctctgtt acaagccgca atttgccgtc
     5221 gtgataccgc ttgtgctcgc cgcgaccggg cactggcgaa catttggcgc cgccgccgca
     5281 accgtgctgg cggccggcgg ggcggtgacg atgattttcg gggcggagat ctggccagca
     5341 ttcatggcct cggcgcattt cacgcgcacc gttgttttgg agcagggaaa tacgggcttt
     5401 tataaaatgc aaagcgtgtt tgccgggatc agaatgtggg gcggcggcgt tacgctggct
     5461 tatggcgcgc aggcgattgc cgccgtgacg gtcctgtacg gcctggttcg catatggcgg
     5521 ggaaatatcg cgatcggcta caaaggcgcc gccctttgcc tcgccgcgct gctggtcacg
     5581 ccctacagca tggattacga cctaatgctg ctggcgcccg caatcgtgct gcttatcgcc
     5641 gaaggcaccg cgcggggctt caagaattac gaacgcctgt tgctgacagt tctttgggtt
     5701 gttcccgcca tcgtgcgcaa cgtcgcccat tacacaatca ttcccctggc cattccggcg
     5761 atggtatttt gtcttggatc gatttacttg cgatgcggcg cccgcggact gtcggctgct
     5821 tcgggtcccc agcccatggg gatgatgccg tgatgcccaa atgcagagcg agatcacgat
     5881 gaccatgaaa aaagaaccgg catggtgaat aaagcgcgaa agtttacgat aaggtcggtt
     5941 ccataggggc tttttcgtat cacgccggga caaaaggacg aaagcgcacg tcccgcgatt
     6001 aaggcgaaat taagcggcgg cgcctagtct catcgcgtcc gcagcgtacg aaaagatttc
     6061 gttcggggtt gggcatccta gggtgtcact aagttggaga ctaatatgaa cctcatctcg
     6121 cgtttcgttc gcgatgaatc aggcgccacc gccatcgagt atggcctgat tgccgctctc
     6181 atcgctgttg tcatcatcac cgccgtgact gccgtcggca cacaattgtc gtcgattttc
     6241 aacgtggtgc agaccaagct cggcgcagcc aacccgtagg gttaggctac aagctgtcaa
     6301 gaacggccgc cctccagaaa aggcggccgt tcgtttttct aggctttgca agcaatgatt
     6361 gccgaaatcc tggtcatcgt cgccttgccg ctgctgctgg ccatcgccgc aggctgggat
     6421 attgccagct tcaccattcc caatttcctt tcattggcgc tgctggcggc ctttgcgctg
     6481 ttcgcggtcg cggccgggct gaccctcact tctatcggct ggcatctgct ggcggggttg
     6541 cttgggctat ccatcggttt cacgcttttc gcattgggtt atatcggcgg cggcgatgcc
     6601 aagctgtttg ccgcagttgt gctgtggctg ggcttcaaag acttgctgcc ctatgcattg
     6661 ttggccagcc tgttcggcgg cgtcctcact cttggcatcg tgctgctgcg ccggtgtcca
     6721 ctgccggatg ttctggcgcg ccagggctgg atcgtgaagc tgcacgacgc gcgctccggc
     6781 gttccctatg gcgtggcgct ggccgccggc gccttcatcc tgctgccttc gacggaaatc
     6841 tttcgcctgg ctgcagcggc ttaacaaaag cctaacccgg taaaaaccta ccttaacaaa
     6901 gacctaccga acatgtgcgc tttttgcgcc gattttaaaa atgttcgatg caaaacacag
     6961 ttatctccca gccaattgca ctgctcccat taagcaattt ctaaagggtt gcatggtgaa
     7021 ttgtcaccaa agggagctag cgcgtcatga acacccaacg cctgatcgta ctcggcattg
     7081 ccctggtggc tgccggcggc gctgcgttcc ttgtgcgcgg catgctgggc ggcggtacac
     7141 cggccgtgca ggcaaaggcc gcgcccgcga ttgcgatgag cgaagttctt gtcgccaacg
     7201 ccaaccttac gcccggccag gcgctttccg tcgaacaggt gcgctgggag aaatggccga
     7261 ccggctcggt ggatccgtct ttcatcaccc atgaagcggc gggcagcgaa gagcaggccg
     7321 tgaagggcac cgtggtgcgc
//
LOCUS       DATMDK010000076         3395 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_3009920,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000076 DATMDK010000000
VERSION     DATMDK010000076.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3395)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3395)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3395
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3009920"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1164
                     /locus_tag="VNN98_01490"
     CDS             <1..1164
                     /locus_tag="VNN98_01490"
                     /inference="COORDINATES: protein motif:HMM:NF016289.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M28 family peptidase"
                     /protein_id="HWM60789.1"
                     /translation="KQGHDDFAGQDLKGKIAVVLSGGPADISGAIKSNARFERNAALG
                     KRGALGIISLTTPKQVEILWERQKLLVRQPGMYLADAKLRDTKQPFFAATFDPGQSEL
                     LFKGSGHSFAELCALADDSKPVPVFALPLRLKAGIAATRGPLTSPNIVATLEGSDPKL
                     KSQYVAVSAHLDHLGIGAAVKGDTIYNGAMDDASGVATVLDIAHRLKTGPKPKRSILF
                     LLFTAEEKGLLGSSYYARRPTVPKKSIVADLNFDMPLPLWPLKTVYAPGQEESSLGAD
                     ARAVAASQDLAMVPDPLPDRNVFIRTDQFSFVREGVPALVFKFGFAKDTPEFQIEHDW
                     RANRYHAPSDDLDQPVMKEEAVKLDAFVAALAKHVADAADRPHWLAGSVFGKD"
     gene            complement(1455..2021)
                     /locus_tag="VNN98_01495"
     CDS             complement(1455..2021)
                     /locus_tag="VNN98_01495"
                     /inference="COORDINATES: protein motif:HMM:NF024579.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM60790.1"
                     /translation="MKLLLASAAMAALMATAAQAAPQIQQVIYNVNAVSQCSLAAGEQ
                     ANLKDGLTACNTALSDPAMTHRAALLEDRGVIQARLGNNDAALQDYNGAIALDSQMGD
                     AYVSRAGVLIAMKHYDQARADIAQGMALNASNMHAAYYSRAVIEEETGDVKAAYRDYK
                     AALAIKPDFAPASRELSRFKVVQRSARA"
     gene            2227..3153
                     /locus_tag="VNN98_01500"
     CDS             2227..3153
                     /locus_tag="VNN98_01500"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM60791.1"
                     /translation="MRRQFGFFLIALSICGSVSALAPPPVRPPIISVSHLAVYDADLA
                     KAEHFYVHDLGAVKMPDPENPAGARYYFSPVQFVEVLPLPAGAGLNRMDHIAFNTSNV
                     AGMRVYLIAHKVDVPNLISTIISKGADGSQWFQVKDPEGVSVEFVQPPTPLPSIHVNP
                     LFGHIIHVGAVVHDRALEDSFYRDVLGFRPYWFGGMKDDAPPSWVSQQVPDGPDWLEY
                     MVTSNTLTQAQMGVLNHFSLGVPNMEKAYTALWNGDRLGGQGPTTVPKIGRDAKWQLN
                     LLDPDGTRAEVMELHAIGKPCCSAFTTGDPEK"
     gene            3155..>3395
                     /locus_tag="VNN98_01505"
     CDS             3155..>3395
                     /locus_tag="VNN98_01505"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM60792.1"
                     /translation="MKWILAALLALWSGAAAAAPIKVMILDGASAAAYHDWKLTTQVM
                     KRELDETGLFDVTVVSAPPAAGDFSGFHPDFAGYRV"
BASE COUNT          621 a         1041 c         1071 g          662 t
ORIGIN      
        1 aaacagggtc atgacgattt cgccggtcaa gacctcaaag gcaagatcgc ggtggttctc
       61 agcggcgggc cggccgatat ttccggcgcg ataaaatcca acgcccggtt cgaacgcaat
      121 gcggcgctgg gcaagcgggg cgcgctgggc atcatcagcc tgaccacgcc caagcaggtt
      181 gaaatcctgt gggaacggca gaagcttttg gtgcgtcagc ccggcatgta tctggcggac
      241 gccaaattgc gtgacaccaa gcagcccttc ttcgccgcca ctttcgatcc tggccagtcg
      301 gaattgttgt tcaagggcag cggtcacagt ttcgctgagc tttgcgcctt ggcggatgac
      361 tccaagccgg tgccggtttt tgccttgccc ctgcgtctca aggccggcat cgccgcgacg
      421 cgcgggccgc tgacctcgcc caacatcgtg gccacgctcg agggcagcga tccgaaattg
      481 aaatcgcaat atgtcgcggt gtcggcgcat ctcgatcatc tgggcatcgg cgctgcggtg
      541 aaaggcgata ccatctacaa tggcgcgatg gacgacgcct cgggcgtcgc cacggtgctg
      601 gacatcgccc atcgtctcaa gaccgggccg aaacccaagc gttcgatcct ctttctctta
      661 ttcaccgccg aggaaaaggg cctgctgggc tccagctatt atgcccgccg tcccacggtc
      721 cccaagaaga gcatcgtggc ggacctgaat ttcgacatgc cgctgccgct atggccgttg
      781 aagacggtgt atgcgccggg ccaggaagaa agcagcctgg gtgccgacgc ccgcgccgtg
      841 gcggccagcc aggacctggc gatggttccg gaccccttgc ccgaccgcaa cgtctttatt
      901 cgcaccgacc agttcagctt tgtgcgcgag ggggttccgg cgctggtgtt caagttcggc
      961 tttgccaagg acacgccgga attccagatc gagcatgact ggcgcgccaa ccgctatcac
     1021 gcgccgtcgg acgacctcga ccagccagtg atgaaggagg aggcggtgaa gctggatgcc
     1081 ttcgtcgccg ccctggccaa gcatgtggcc gatgctgcgg atcgcccgca ctggctggcc
     1141 ggcagcgtct tcggcaagga ttagagttgt ttcggattga gaagatgcag gctgcttccc
     1201 tcatcctcac catggccggc ctccggcgca tagcgacagc gtatgcgcgc catccagaac
     1261 cgcaaacacg gaatttgttg ccctggatgg gcgggtcgtg aagcttgtcc tccggccgcg
     1321 ctttgcgcgg accggggggc ccgcccatgg tgagcgtaag tttttcactc aattcaaaac
     1381 ggctctgaaa gaaaatccgc cgcggtcgcc cgcaacggag ttttattctc gtccgtgaaa
     1441 ttcagacgtt tttgttaagc gcgggcgctg cgctgcacga ccttgaagcg cgacagttcg
     1501 cggctggcgg gcgcgaagtc cggcttgatc gccagcgccg ccttataatc gcgataggcg
     1561 gctttcacat cgccggtttc ctcttcgatc acggcgcggc tgtagtaggc agcgtgcatg
     1621 ttggaggcgt tcagcgccat gccctgggcg atgtcggcgc gggcctggtc atagtgtttc
     1681 atcgcgatca gcacaccggc gcggctgaca taggcatcgc ccatctgcga atccagcgcg
     1741 atggcgccgt tataatcctg cagtgccgcg tcgttgttgc ccaggcgggc ctggatcacg
     1801 ccgcgatctt ccagcagcgc ggcccggtgg gtcatcgccg gatcgctcag cgcggtgttg
     1861 caggcggtga ggccgtcctt gagattggcc tgctcgcccg ccgccagcga gcactggctc
     1921 acggcattca cattgtagat cacttgctgg atctgcggcg cggcttgcgc ggcggtggcc
     1981 atcaacgcgg ccatggccgc agaagcgaga agcaacttca tgttcgaaca ctccctggcg
     2041 ggatcgtcag gcggatcccc tggcggagaa tctacacccg cactgtgccg ggcgcgcagg
     2101 ataaaatgcg ccgggagata aaaaaagaca ggtgtggcgg ggttttagac atgcctggca
     2161 aacaggcaat gaagctccga gaacaagacg ctatactccc gcccaagaac aaggtgggga
     2221 gacgggatgc gacgacagtt tggctttttc ctcattgctc ttagcatctg cggcagtgtc
     2281 tccgcgctcg cgccgccgcc tgtgcggccg ccgatcatct cggtgtcgca tcttgctgtc
     2341 tatgacgccg acctggccaa agccgagcat ttctacgtcc atgatttggg cgcggtgaag
     2401 atgcccgatc cggaaaatcc tgcgggcgcg cggtattatt tctcgccggt ccagttcgtg
     2461 gaggtattgc cgctgcccgc cggtgccggc ctcaaccgga tggatcacat cgctttcaac
     2521 acaagcaatg tcgccggcat gcgtgtgtat ctgatcgcgc ataaggtcga tgtgcccaac
     2581 ctcatcagca cgatcatcag caagggcgcc gatggcagcc agtggttcca agtcaaggat
     2641 cccgaaggtg tgagcgtcga attcgtgcag ccgcccacgc cgttgccgtc cattcacgtc
     2701 aatccgctgt tcggccacat catccatgtc ggcgcggtcg tccatgaccg ggcgctggaa
     2761 gatagcttct atcgcgacgt gctgggtttt aggccctact ggttcggcgg catgaaggat
     2821 gacgcgccgc ccagctgggt atcgcagcag gtgccggacg ggccggattg gctggaatat
     2881 atggtcacca gcaacacctt gacccaggcg cagatgggcg ttttgaacca tttctcgctg
     2941 ggcgttccca atatggaaaa ggcctacacc gcgctgtgga acggcgaccg gctgggcggc
     3001 cagggcccca ccacggttcc caagatcgga cgcgacgcca aatggcagct caatctgctg
     3061 gaccccgacg gcacccgcgc ggaagtgatg gaattgcacg ccatcggcaa gccctgctgt
     3121 tcggctttta ccaccggcga tccggagaaa tgacgtgaaa tggattctgg cggccctgct
     3181 ggcgttatgg agcggtgccg ccgccgccgc gccgatcaag gtgatgatcc tggatggcgc
     3241 cagtgcggcc gcttatcacg actggaagct caccacccag gtcatgaagc gtgaactgga
     3301 tgagacgggc ttgttcgacg tgacggtggt gagcgcgccg ccggcagccg gcgacttttc
     3361 cggctttcat cccgacttcg cggggtaccg cgtgg
//
LOCUS       DATMDK010000077         3266 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2324570,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000077 DATMDK010000000
VERSION     DATMDK010000077.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3266)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3266)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3266
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2324570"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..369)
                     /locus_tag="VNN98_01510"
     CDS             complement(<1..369)
                     /locus_tag="VNN98_01510"
                     /EC_number="1.20.4.4"
                     /inference="COORDINATES: protein motif:HMM:NF013607.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030612 - arsenate reductase (thioredoxin)
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="arsenate reductase ArsC"
                     /protein_id="HWM60793.1"
                     /translation="MKQAVLFACTMNAVRSPMAAALLRHLTRGGVYIESAGVKAGELD
                     PLAVAAMEEIGLEIAQHKPRCFEDLEDGSFDLVITLSPEAQHKAVELTRTAATRVEYW
                     PTMDPTAVEGSREQRLLAYRA"
     gene            complement(371..862)
                     /locus_tag="VNN98_01515"
     CDS             complement(371..862)
                     /locus_tag="VNN98_01515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008034738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UPF0262 family protein"
                     /protein_id="HWM60794.1"
                     /translation="MSAAGNYRLSAITLDETSVVTRTPAIEQEREVAIYDLLEANVFK
                     PEGSPGGPYRLILGVEESRLVLDVRLEDGSEQGSEHVRVLLSLAPLRKTVKDYFLVCE
                     SYYKAIRTAPPHQIESLDMARKTLHDEGARELQERLAGKVETDFDTARRLFTLICVLQ
                     MRG"
     gene            complement(865..2166)
                     /gene="hisD"
                     /locus_tag="VNN98_01520"
     CDS             complement(865..2166)
                     /gene="hisD"
                     /locus_tag="VNN98_01520"
                     /EC_number="1.1.1.23"
                     /inference="COORDINATES: protein motif:HMM:NF013013.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004399 - histidinol dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol dehydrogenase"
                     /protein_id="HWM60795.1"
                     /translation="MARRLNAADKSFAADFQTLLFAKREDEEDVAAVVRGIIADVRSR
                     GDAALIALTNKFDKAGVTQESLKLTAAEIETALGQVSKAQLAAIETAAGRIESYHRRQ
                     LPEDARFTDDTGALLGWRWTSVDSVGLYVPGGTASYPSSVLMNAIPAKVAGVARIVMV
                     TPATGGTINPLVLAAARRAGVSDIYRIGGAQAVAALAYGTETIKAVDKIVGPGNAYVA
                     AAKREVFGRVGIDSIAGPSEILVIADGQNDPEWIAADLLSQAEHDVSSQSILITDDAG
                     FADRVAAAAERQTATLPRKDIAAKSWADNGAIIVVKALDDAAPLADVIAPEHLEIATA
                     DPEGFSKKVRHAGAIFLGRHTPEAMGDYIAGPNHVLPTSRTARFSSGLSVLDFMKRTT
                     LLGLDARSMAAIGPDALTLAESEGLEAHARSIVARLNRPKD"
     gene            complement(2156..2590)
                     /locus_tag="VNN98_01525"
     CDS             complement(2156..2590)
                     /locus_tag="VNN98_01525"
                     /inference="COORDINATES: protein motif:HMM:NF022612.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2948 family protein"
                     /protein_id="HWM60796.1"
                     /translation="MTRLKLAAADAEDLQILSARLQDAVVKLKNVTWLPKKRRFAAVL
                     NRLQWEDGGKTRVRAGLHFDGVLKVQSHKVKLGAGEAVVSLLAVTFTPNAGEDPGGTI
                     EIVLAGGGMIRLTVECIDAELADMTGAWAARDTPDHEAPDGP"
     gene            complement(2605..>3266)
                     /locus_tag="VNN98_01530"
     CDS             complement(2605..>3266)
                     /locus_tag="VNN98_01530"
                     /EC_number="2.5.1.7"
                     /inference="COORDINATES: protein motif:HMM:NF006873.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016765 - transferase activity,
                     transferring alkyl or aryl (other than methyl) groups
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine
                     1-carboxyvinyltransferase"
                     /protein_id="HWM60797.1"
                     /translation="AMGAKISGLGSSEIVVEGVARLHGTTHRVMADRIEAGTYAIAAA
                     IAGGEVELIGASHDTIASLLSLLTKSGAEITATPRGLKVHMNGARPHASDVTTAPYPG
                     FPTDLQAQIMALMAVADGTSVIREKIFENRFMHVPELARMGAQVRIDGDTATVRGVEK
                     LKGAPVMATDLRASVSLVLAGLAAEGETNVSRVYHLDRGFDRLEEKLSRVGADIARVP
                     E"
BASE COUNT          516 a         1128 c         1026 g          596 t
ORIGIN      
        1 cgcgcggtag gccagcagcc gctgctcccg cgaaccctcg accgccgtgg ggtccatggt
       61 gggccaatat tccaccctgg ttgccgccgt gcgggtcagc tccaccgcct tgtgctgggc
      121 ttcgggcgac agggtgatca ccaggtcgaa actgccgtcc tccaggtcct cgaaacagcg
      181 cggtttgtgt tgggcgatct ccagcccgat ctcctccatc gccgccaccg ccagggggtc
      241 gagttcgcct gccttgaccc cggccgattc gatatagacg ccgccccggg tcagatggcg
      301 cagcagcgcc gccgccatgg gtgaacgcac cgcgttcatc gtgcaggcga agagcacggc
      361 ctgcttcatc tcagccccgc atctgcaaaa cgcagatcag cgtgaacagc cgccgtgcgg
      421 tgtcgaagtc ggtttccacc ttgccagcca accgttcctg cagttcgcgc gcgccttcgt
      481 cgtgcagggt cttgcgcgcc atgtcgaggg actcgatctg atgcggcggc gcggtgcgga
      541 tcgccttgta ataactttcg cagaccagga aataatcctt caccgtcttg cgcagcggcg
      601 ccagcgacag cagcacccgg acatgctcac tgccctgttc gctgccgtcc tccagccgca
      661 catccagcac cagccggctt tcctccacgc ccaggatcag ccgatagggg ccgccgggcg
      721 agccttccgg cttgaagaca ttggcttcca gaagatcgta gatggcgact tcgcgctcct
      781 gctcgatggc gggagtgcga gtgacgacac tggtttcgtc cagggtgatc gccgacagcc
      841 ggtaattccc cgccgcgctc accgtcaatc cttgggccgg ttcaggcgcg ccacaatgga
      901 gcgggcatgg gcctcaagcc cctcggactc cgccagggtc agcgcgtcag ggccgatggc
      961 ggccatgctc cgcgcgtcca gtcccagcaa ggtggtgcgc ttcatgaagt ccagcaccga
     1021 caggcccgac gagaaccgcg ccgtgcgcga ggtgggcagc acatggttgg gaccggcgat
     1081 atagtcgccc atcgcttcgg gcgtgtggcg ccccaggaaa attgcgccgg cgtgacgcac
     1141 ttttttcgag aagccttccg gatcggcggt agcgatttcc agatgttcgg gcgcgatcac
     1201 gtcggccagc ggtgcggcat cgtccagcgc cttcaccaca atgatggcgc cgttatcggc
     1261 ccagcttttg gcggcgatgt ccttgcgcgg cagggtggcg gtctggcgtt ccgccgcagc
     1321 ggccacccgg tcggcaaagc cggcatcgtc agtgatcagg atgctttgcg aggacacatc
     1381 atgctcggcc tggctgagca ggtcggcggc gatccattcc ggatcgttct ggccgtcggc
     1441 gatcaccagg atttccgacg ggcccgcaat ggagtcgatg ccgacccggc cgaagacttc
     1501 gcgcttggcc gccgcgacat aggcgttgcc gggtccgaca attttgtcca ccgctttgat
     1561 cgtttcggtg ccataggcca gcgcggccac tgcctgcgcc ccaccgatgc ggtagatgtc
     1621 gctgacccct gcccgcctgg ccgcggccag caccagcgga ttgatggtgc cgccggtagc
     1681 gggcgtaacc atgacgatcc gcgccacgcc ggcgaccttg gccggaatgg cgttcatcag
     1741 gacggaactg ggataggagg cggtaccgcc cggcacatag aggcccacgc tgtccacact
     1801 ggtccagcgc caacccaaca atgcgccggt atcatcggtg aagcgggcat cttcgggaag
     1861 ctggcggcgg tgatagcttt cgatgcggcc ggcggcggtc tcgatggccg cgagctgagc
     1921 cttgctgacc tggcccagcg ccgtctcgat ctcggcggcc gtcaatttca ggctttcctg
     1981 ggtgacgccc gccttatcga atttgttggt cagcgcgatc aaggccgcat cgccgcggct
     2041 gcgcacatcg gcgatgatgc cgcgcaccac ggcggcaaca tcttcttcgt cctcgcgctt
     2101 ggcgaaaagc aacgtctgga aatcggcggc gaagctcttg tccgccgcgt tcagcctacg
     2161 ggccatcagg tgcctcgtga tcgggcgtat cgcgcgccgc ccaggctccg gtcatgtcgg
     2221 ccagttcggc gtcgatacat tccaccgtca atcggatcat gccgccgccc gccagcacga
     2281 tctcgatcgt cccgccgggg tcttcacctg cattgggcgt gaacgtcacc gccagcagcg
     2341 acaccaccgc ctcgcccgcg cccagcttga ccttgtgcga ctgcactttc agcacgccgt
     2401 cgaagtgcag cccagcgcgc acccgcgtct tgccgccatc ttcccattgc agccggttca
     2461 gcaccgccgc gaagcggcgc ttcttgggca gccaggtcac attcttcagc ttgaccacag
     2521 catcctgcag ccgcgctgac aggatttgca ggtcttcggc gtcggccgcc gccagtttca
     2581 accgggtcat tccggcacgc tctttcattc tggaactctg gctatatccg cgccgacccg
     2641 ggagagcttc tcttccagcc ggtcgaagcc gcggtccagg tgatagactc tggagacatt
     2701 ggtttcgcct tccgccgcca gccccgccag caccaggctg accgaagccc gcaggtcggt
     2761 cgccatcacc ggagcgccct tgagcttttc cacgccgcgc accgtggcgg tgtcgccgtc
     2821 gatgcgcacc tgcgccccca tgcgcgccag ttccggcaca tgcatgaagc ggttctcgaa
     2881 aatcttttcc cggatcaccg aagtgccgtc ggccaccgcc atcagcgcca tgatctgggc
     2941 ctgcaggtcg gtgggaaacc ctggataggg cgcggtggta acatcggagg cgtgcggccg
     3001 cgccccgttc atatgcacct tcaagccgcg cggcgtggcg gtgatctcgg cgccgctttt
     3061 ggtcagcagc gacagcagcg aggcgatggt gtcgtgcgag gcgccgatca gttccacttc
     3121 cccgccggcg atggcggcgg cgatggcata ggtgccggcc tcgatgcggt cggccatcac
     3181 ccggtgtgtc gtgccgtgca acctggcgac gccctccacg acgatctcac tggaacccag
     3241 gccggaaatc ttggcaccca tggcga
//
LOCUS       DATMDK010000078         3619 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2095408,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000078 DATMDK010000000
VERSION     DATMDK010000078.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3619)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3619)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3619
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2095408"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..260
                     /locus_tag="VNN98_01535"
     CDS             <1..260
                     /locus_tag="VNN98_01535"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM60798.1"
                     /translation="TAVAKFKTAVQMIAIGAMILTPLADVVAPGVPALTYAAIAYILL
                     WVAAALTVYTGVIYFKNGIAYLRPGPTPEIGEEPPRLREPA"
     gene            complement(268..1161)
                     /locus_tag="VNN98_01540"
     CDS             complement(268..1161)
                     /locus_tag="VNN98_01540"
                     /EC_number="2.6.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018408243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004084 - branched-chain-amino-acid
                     transaminase activity [Evidence IEA];
                     GO_process: GO:0009081 - branched-chain amino acid
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid aminotransferase"
                     /protein_id="HWM60799.1"
                     /translation="MADVIPFDQRDGSLWYDGKLVPWKDAKTHVLTHGLHYGSCVFEG
                     ERIYGGTIYKLKEHTARLFKSAEALGMTIPFTQDQINQACIDAAAVQNIKDGYLRPVA
                     FRGSEMMAVSAQNTTIHVAIACWPWPSYFSPAEKLKGIRLDISRWRRPAPDTEPVHAK
                     AAGLYMICTISKHEAEAKGYADALMVDYRGYVAEATGANVFFVQDGELHTPDPDCFLN
                     GITRQSVIAIAKARGVRVVERHIEPEEMKGFSECFLTGSAAEVTPVSEIGPYKFKPGA
                     LTETLMNAYADEVRGVATVSV"
     gene            1331..2035
                     /locus_tag="VNN98_01545"
     CDS             1331..2035
                     /locus_tag="VNN98_01545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014247560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HWM60800.1"
                     /translation="MTMPVPGGDEPHLLVVDDDERLRALLQRYLSSNGYRVSAAPGAA
                     EARALMKSMEFDLLILDVMMPGESGLDLTTSVRKDTIVPILMLTARGDPADRIAGLEL
                     GADDYLPKPFEPRELLLRVNSLLRRAVPPEAPATGPVRMGEALFDPATSRLTRAGKPV
                     KLTGAEAALLQLFATHAGRPFSRTDLCKRLNVALERSIDVQVTRLRRKIEEDPKLPLY
                     LQTVRGVGYMLVPDRG"
     gene            2058..3368
                     /locus_tag="VNN98_01550"
     CDS             2058..3368
                     /locus_tag="VNN98_01550"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HWM60801.1"
                     /translation="MPRGLFGRSLIIIVAPIVLLQAIIAYVFFERDLDTTTRRLARDV
                     AADIAMLVALEDRDGIDRDHLRALAARQLDYRIRFLPGQNLTPFRGKLTSTIDVALDD
                     ILEQRIGKDRDFRTARSGDDFEIKVDVHDGVLAVLVPRDRVTVSKPDIFILWMVGSSL
                     LLMGIAILFLRNQVRPIERLARAADSFGKGRAVPDFKPYGATEVRRAAQAFITMRERL
                     ERHVTQRTEMLAGVSHDLKTPLTRLKLALALLPDGEGHDATNDAASMRDDIAEMEHML
                     DEYLAFARGEEGEESTVTDLGELVSDTAQAASRARQQGGSVAVTVPAHIHVSVKRAAL
                     RRCLTNLIDNALKHGNQVAVSLTRDERLVEIAVEDNGPGIPDARREEAFRPFHRLDQG
                     RNLQSGGSGLGLAIARDIARAHGGDIVLDNSAMGGLKATVRLPV"
BASE COUNT          605 a         1206 c         1165 g          643 t
ORIGIN      
        1 tcacggcggt ggccaagttc aagaccgcgg tgcagatgat cgccatcggc gccatgatcc
       61 tcaccccgct ggccgatgtg gtcgcgccgg gcgtgccagc gctgacctat gccgcgatcg
      121 cttatattct cttatgggtg gccgctgccc tcaccgttta taccggcgtg atctatttca
      181 agaacggcat agcctatcta cgccccggtc ccacgccgga gattggtgaa gagccgccgc
      241 ggctgcgtga gccggcgtga gcgaaagcta gaccgaaacg gtggcgacac cacgcacttc
      301 atcggcataa gcattcatca gcgtctcggt cagcgcaccc ggcttgaact tatagggccc
      361 gatctccgac accggcgtca cttccgccgc cgaaccggtg agaaagcatt cgctgaagcc
      421 cttcatctct tccggttcga tatgccgctc caccacccgc acgccgcgcg ccttggcgat
      481 ggcgatcacc gattggcggg tgatgccgtt gaggaaacag tcggggtccg gcgtgtgcag
      541 ctcgccatcc tgcacgaaga agacattggc gccggtggct tccgcgacat agccgcgata
      601 gtcgaccatc agcgcatcgg catagccctt ggcttccgct tcatgcttgg agatggtgca
      661 gatcatgtag aggccggccg ccttggcatg caccggctcg gtatcgggcg ccggacggcg
      721 ccagcgcgaa atgtccagcc ggatgccttt gagcttttcc gccgggctga aataggacgg
      781 ccagggccag caggcgatgg cgacatggat ggtggtgttc tgcgccgaca ccgccatcat
      841 ctcgctgccg cgaaatgcca cggggcgcag ataaccgtcc ttgatatttt gcaccgcggc
      901 ggcatcgatg caggcctgat tgatctggtc ctgggtgaag ggaatcgtca tgcccaaggc
      961 ctcggccgac ttgaacagcc gcgcggtatg ttccttcagc ttgtagatcg tgccgccata
     1021 gatgcgctcg ccctcgaaca cgcaggagcc gtaatgcagc ccgtgggtca gcacatgggt
     1081 cttggcgtcc ttccagggca ccagcttgcc gtcgtaccag agcgagccat cgcgctggtc
     1141 gaaagggatc acgtctgcca tcgaaacgtc ctcaactccc gcccttagct accattgggg
     1201 gcgggcttgc ccctcttggt gcgagggcct agtttttccg ccatgtattg cagcatgtcc
     1261 ggcgcgaaaa ccgcaagggt gataagggct ttttcgcccc tgccccgggc atggctgcca
     1321 tgagcccgcc atgacgatgc cggttcccgg cggcgacgag ccgcatctgc tggtggtgga
     1381 tgacgatgaa cggctgcgcg ccctgctgca gcgctatcta tcgtccaacg gctatcgggt
     1441 cagtgccgcg cccggcgccg ccgaggcccg cgccctgatg aaaagcatgg aattcgacct
     1501 gctgatcctg gacgtgatga tgccggggga atccggcctc gacctcacca ccagcgtgcg
     1561 caaggacacc atcgtgccca tcctgatgct gacggcgcgc ggcgatcccg ccgaccgcat
     1621 cgccggcctg gaacttgggg ccgatgatta cctgcccaag ccgttcgagc cgcgcgagtt
     1681 gctgctgcgg gtcaattccc tgctgcgccg cgccgtcccg cccgaggcgc ccgctaccgg
     1741 tccggtgcgg atgggcgagg cgctgttcga tcccgccacc tcgcggctga cgcgggccgg
     1801 caagccggtg aaactgaccg gcgcggaagc ggcgctgctg caattgttcg ccacccatgc
     1861 ggggcggcct ttttcccgca ccgacctgtg caagcggctg aacgtggcgc tggaaagatc
     1921 catcgacgtg caggtgaccc gcttgcgccg caaaatcgag gaagacccca agctgccgct
     1981 gtatctgcaa acggtgcggg gggtcggcta tatgctggtg cctgaccgtg ggtgagggac
     2041 tcaccctccg gcggatcatg ccgcgcgggc tgttcggccg ttcgctgatc attatcgtcg
     2101 cgcccatcgt gctgctgcag gcgattatcg cctatgtttt tttcgagcgc gacctggaca
     2161 ccaccacgcg gcgcctggcc cgcgacgtcg ccgccgacat cgccatgctg gtggcgctgg
     2221 aagaccgtga cggcatcgac cgcgaccatc tgcgtgccct ggcggcgcgc cagctcgatt
     2281 accgcatccg cttcctgccc ggccagaatc tcacaccctt ccgggggaaa ctgaccagca
     2341 ccatcgacgt ggcgctggac gatattctgg aacagcgcat cggcaaagat cgcgatttcc
     2401 gcaccgcccg cagcggcgac gatttcgaaa tcaaggtgga cgtgcatgac ggggtgctgg
     2461 cggtgctggt gccgcgcgac cgggtcaccg tctccaagcc ggacatcttc attctctgga
     2521 tggtaggctc gtcgctgctg ctgatgggca tcgccatcct gttcctgcgc aatcaggtac
     2581 gccccatcga gcggctggcg cgcgccgccg acagtttcgg caaaggccgc gccgtgcccg
     2641 acttcaagcc ctatggcgcc accgaagtgc ggcgcgccgc ccaggccttc atcaccatgc
     2701 gcgaacggtt ggagcgccat gttacccagc gcaccgaaat gctggcaggg gtcagccacg
     2761 atctcaagac gccgctgacc cggctgaagc tggcgctggc gctgctgcct gatggtgagg
     2821 ggcatgatgc cacgaacgac gctgcgtcca tgcgcgacga catcgcggag atggaacaca
     2881 tgctggacga atatctcgcc ttcgcgcgcg gcgaagaagg cgaggagtcc accgtgaccg
     2941 atctgggcga actggtgagc gacaccgccc aggccgcatc ccgggcgcgc cagcagggcg
     3001 gcagtgttgc cgtcaccgta ccggcgcata tccatgtcag cgtcaagcgc gccgccctgc
     3061 gccgctgcct gaccaacctg atcgacaatg ccctcaagca tggcaatcag gtcgcggtga
     3121 gtttgacgcg cgatgagcgg ctggtggaga tcgcggtgga ggataacggc cccggcattc
     3181 ccgatgcgcg gcgggaagaa gctttccgcc cctttcaccg cctggatcag ggccgcaatc
     3241 tgcaaagcgg cggctccggc ctgggccttg ccatcgcccg cgacatcgcc cgggcgcatg
     3301 gcggggatat cgtgctggat aacagcgcga tgggcggctt gaaggcgaca gtgcggttgc
     3361 cggtttaatg gttgcacggc cccctcaccc gcggtcgctg cgctcccttg ccctctcccc
     3421 cttaggggga gagggaagag cgcgcgctgt gcgcgcgcga gggtgagggg gtcagcgcaa
     3481 ctcttccgcc cgcttgcgcg ccgcgcgcac cgcgcgcttc atcagcgcca tcagcccgtc
     3541 ttccgccatc aggacataca gtgccgccgc ggtggtgccg cccggactgg tgacggcttc
     3601 gcgcagcgcc gaagccgga
//
LOCUS       DATMDK010000079         2326 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1417849,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000079 DATMDK010000000
VERSION     DATMDK010000079.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2326)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2326)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2326
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1417849"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(77..427)
                     /locus_tag="VNN98_01555"
     CDS             complement(77..427)
                     /locus_tag="VNN98_01555"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM60802.1"
                     /translation="MDMRPILFLLMLLPLAGCGLFADKETRILRKSPDYRAGYQDGCN
                     SAWSPDANKRHDDTVVRDDQQYRDNKAYHVGWNRGLNACRSTGYSGGALPGTVPGGPV
                     PDMNPGNGGAPRGL"
     gene            503..1027
                     /locus_tag="VNN98_01560"
     CDS             503..1027
                     /locus_tag="VNN98_01560"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM60803.1"
                     /translation="MKQTDFSEHRILLLGAKTHALVLLRSLLSHAGITKIIQVEDPRR
                     ALELLSIEHFSAVFCDPSVERAKEKPFIVAARRSDAMLNPMIPIFVMQERARRRDVEK
                     ARDTGVTDVLTTPISPKTLIDKLRAATQTPRPFIVAAEFFGPDRRAKARPAYFGSDRR
                     KRAPKKAKIDFTHL"
     gene            complement(1095..1400)
                     /locus_tag="VNN98_01565"
     CDS             complement(1095..1400)
                     /locus_tag="VNN98_01565"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM60804.1"
                     /translation="MIFRAVFWIGLVSLLAPHEPDLGLGRPGAGTLQTPSPAMIQSAA
                     NGLSRMGQDCGSACAGGLGLLHLFHLNADSSLTAGLADVKAQIEADQRARSQRTKAI"
     gene            complement(1670..>2326)
                     /locus_tag="VNN98_01570"
     CDS             complement(1670..>2326)
                     /locus_tag="VNN98_01570"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing sensor histidine kinase"
                     /protein_id="HWM60805.1"
                     /translation="TPLNAILGFSDLMGTLADTMAPEQIREYAGLVHQGGDNLLKIIN
                     QIMDLTKISAGRYDLRRGCVDAGGVLWMAREAFLAQAVARGIAIDADRCPVGLLADAD
                     EAVLTAMMHSLLDNAVTFTTGNRIILSAGIGKAGIALSVEDNGLGVAPEDLARIQEPF
                     EHAGHSEGSQHAKGAGLGLTLVKAFAELHGGGLELNSRPGEGFRATVMLPAVSPQAES
                     "
BASE COUNT          442 a          743 c          711 g          430 t
ORIGIN      
        1 tcgcgccgct ctgtgccgat acacaggcgc tggacctgcg cacgcaaaag actttggaaa
       61 tcacaaagct ttgtaactag agcccgcgcg gcgcgccgcc attgcccgga ttcatatcgg
      121 gcaccgggcc gccgggcacg gtgcccggca aggcgccgcc gctatagccg gtgctgcggc
      181 aggcattcag tccgcgattc cagcccacat ggtaggcctt gttgtccctg tactgttgat
      241 cgtcgcgcac gacagtgtcg tcgtgtcgct tgttggcgtc gggactccag gcgctgttgc
      301 agccgtcctg atagccggcg cgatagtcgg gcgacttgcg caagatgcgg gtctccttgt
      361 cggcgaacag gccgcagccc gccagcggca acagcatcag taaaaacagg atcgggcgca
      421 tatccacctt gcgttaacca ggccctttta ccccggttta agtcaaaaag gcgcagattc
      481 cgcgcaccaa caagcgggtt tcatgaaaca aacggatttc tccgagcatc gcatactgtt
      541 gctgggcgcc aaaacccacg cacttgtgtt gctgcgctcg ctgctgagcc atgccggcat
      601 caccaagatc atccaggtcg aggaccctcg ccgcgccttg gaactgctga gcatcgagca
      661 tttcagcgcc gtattctgcg atcccagtgt ggagcgcgcc aaggaaaagc ccttcatcgt
      721 ggcggcgcgg cgcagcgatg ccatgctcaa tcccatgatc ccgatcttcg tgatgcagga
      781 gcgcgcccgc cgccgcgacg tggaaaaggc ccgtgatacc ggggtcaccg acgtgctcac
      841 caccccgatc agccccaaga ccctgatcga caagctgcgg gcggcgaccc agacgccccg
      901 cccctttatc gtcgccgcag aattcttcgg cccggaccgc cgcgccaagg cgcgcccggc
      961 ctatttcgga tccgaccgcc gcaagcgggc gcccaagaag gccaagatcg atttcaccca
     1021 tctctgacac ccgcaaaagc gtgcggccag gcgcggtttt ccgcgtctgg ccgttcgatg
     1081 aagcgtccta ggggttagat cgcttttgtc cgctggctgc gggcccgctg gtctgcctcg
     1141 atctgcgctt tcacatcggc aaggccagcg gtcaggctgc tgtcggcatt gaggtggaac
     1201 agatggagca ggccgaggcc gccggcacac gcagaaccac aatcctggcc catccgcgag
     1261 agaccgttag cggcggactg aatcatggcg ggggaggggg tttgcaatgt accggcgccc
     1321 gggcgtccca ggccaagatc aggctcgtgc ggcgccaata gcgacacaag accgatccaa
     1381 aatacagccc ggaaaatcat aacatgctca tctgtgtttc cacgccagca gcatgcccgt
     1441 gccgagttcc cgggcgctta gtagtttctt taaatttgaa gctagttgcg cgttccccat
     1501 ttcagcacaa acgcagtgct gccggaatcg tttcgcttcg attcaaaaaa gcggcgtgat
     1561 tgattcagat gccgctaaaa ttttcacgaa atggcgtcgg tgcgttaagc aaccggccgc
     1621 gcgcaaggcg ggttttgcgg ggattttaag aggatgggcg aaaataaggc taagactcgg
     1681 cctggggcga gaccgccggc aacatcacgg tggcgcggaa accttcgccc ggccggctgt
     1741 tcagttccag cccgccgcca tgcagttcgg cgaaggcctt gaccagggtc aggcccaggc
     1801 cggcgccctt ggcgtgctgg gaaccttcgc tgtgcccggc atgctcgaaa ggttcctgga
     1861 tccgcgccag gtcttcaggc gccacgccca ggccgttgtc ttccacgctc agggcgatgc
     1921 ccgccttgcc gatgccggct gacaggatga tgcggttgcc ggtggtgaag gtgacggcat
     1981 tgtccagcag gctgtgcatc atggcggtga ggacggcttc gtcggcgtcg gccagcagtc
     2041 caaccgggca acggtccgcg tcgatggcga tgccgcgcgc cacggcctgt gccagaaacg
     2101 cttcgcgcgc catccaaagc acgccgcccg catccacgca gccgcggcgc aaatcgtagc
     2161 gtcccgccga tatcttggtg agatccatga tctggttgat gatcttgagc agattgtcgc
     2221 cgccttgatg caccagcccg gcatattcgc ggatctgctc gggggccatc gtatccgcca
     2281 gagtgcccat cagatcggaa aagcccaata tggcgttcag cggtgt
//
LOCUS       DATMDK010000080         5710 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_725712,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000080 DATMDK010000000
VERSION     DATMDK010000080.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 5710)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5710)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5710
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_725712"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            59..1342
                     /locus_tag="VNN98_01575"
     CDS             59..1342
                     /locus_tag="VNN98_01575"
                     /EC_number="1.1.5.-"
                     /inference="COORDINATES: protein motif:HMM:NF019607.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016901 - oxidoreductase activity, acting
                     on the CH-OH group of donors, quinone or similar compound
                     as acceptor [Evidence IEA];
                     GO_function: GO:0070968 - pyrroloquinoline quinone binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-dependent sugar dehydrogenase"
                     /protein_id="HWM60806.1"
                     /translation="MKRFWIGAALLALLPTALAAQDTPPAPPRTQGDTREFPAPRLVE
                     GQSWETRPPEKADDHPLFPLQTRAPYHKSASYKVTTITDKLRLPWSIAFLPDGKMLVT
                     EKYPGHMRIVSPDGTLSEPLAGIDELAPPRKLGLLDVVLAPGFAKNHRVYFSFFENLG
                     PAYSNTYLAYGTLDEAAGALHEVTVIYRGVPAMPEKNYSAKQGGRIAFARDGSLFMSV
                     GDRDGNDKAAYDAALAQKLDNDVGKIIHLTPDGTPAPDNPFLHTPGVRPEIWAYGIRS
                     PEGFAFDASGRLWETEHGPRGGDELNQIQRGKNYGWPMITHGIDYPGGPVNEGIIAKE
                     GMEQPVYYWDPVIAPSGLAVYHGKLFPQWNGNLLAGALRGLGVYRLELKNGKVVAEEP
                     LLSELKTRIRDVRAGPDGAVYVLTEQKALLKLTPP"
     gene            1389..1919
                     /locus_tag="VNN98_01580"
     CDS             1389..1919
                     /locus_tag="VNN98_01580"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM60807.1"
                     /translation="MTDSGRILASLALASALLLSAPAQAQNQPPVTVAVQASGELPGF
                     RIEEAWPYLAAQMAGAGIGSWHFVPRDMGAAAPNRIEWNFEVLPYAGGQVRRFFPMPE
                     TPGLDMHLQGTHRLISAQVKLYLDGQYQTVTVGQEAVQGGDTDPDLGAFLVRLTRTLE
                     SGYRATDMTPVPHRTP"
     gene            1948..3231
                     /locus_tag="VNN98_01585"
     CDS             1948..3231
                     /locus_tag="VNN98_01585"
                     /inference="COORDINATES: protein motif:HMM:NF016830.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate porin"
                     /protein_id="HWM60808.1"
                     /translation="MLLLALPARAEVLNYEDIFQSPTLTGDWNGARTRLEDRGVQLGG
                     DEILETLGNLDSGKRRGAAVEGRFELFANVDLDKALGWQGAIFHANAYQIHGEGLSAH
                     NLYNLLTVSNIEARPATRLFALWVQQSLFNDSVSLRAGQIAADDEFFVSQYAPLFINS
                     TFGWPAILGINLPGGGPAYPVARPGVRARIAVSPRLVLSAALFSGDASADETGFDFHI
                     NGDVFAISELAYSMTMFELPGTMKLGSWIHSGRFTDQRFDAAHVSLADPASGAPAQHR
                     GDYGGYFILDQLLWRKDGTSDAGLGGFFRVGGNPSDRNRIELHMDSGLTYAAPFGRAN
                     DTIGIGLSYEQVSATQRDLTLDYRRLTGTMPVTPSFESALETSYQAQVATWWIVQPDI
                     QWIIHPGGGVLNLSSPLSGHGAGAVVLGLRTAVAL"
     gene            3337..4296
                     /locus_tag="VNN98_01590"
     CDS             3337..4296
                     /locus_tag="VNN98_01590"
                     /inference="COORDINATES: protein motif:HMM:NF013429.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016853 - isomerase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar phosphate isomerase/epimerase"
                     /protein_id="HWM60809.1"
                     /translation="MKIGVFTPLLSALSLDQVLKKLKSLDIDTVEFGTGNYPGDAHAK
                     LSMLDNPAELATFKSKIADAGMTISALSSHGNPLHPDKEIAAKYAQTSRRTILLAEKL
                     GVKTVVDFSGCPGDSANAKFPNWVTCSWPPEYLEILNWQWDEVVTPYWKTHGKFAADH
                     GVKVAIEMHPGFVVYNPETMLRLRAIAGSSVGANLDPSHLFWQGIDPIVAVRELGEAI
                     HYVHAKDTQLFPTNVTRNGVLDTKSYTDERHRSWIFRTVGYGHSAEWWSEFISTLRMY
                     GYDNVLSIEHEDSLMSPDEGLSKAAALLAQVIIKEKPAAAWWV"
     gene            4296..5435
                     /locus_tag="VNN98_01595"
     CDS             4296..5435
                     /locus_tag="VNN98_01595"
                     /inference="COORDINATES: protein motif:HMM:NF014893.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0016651 - oxidoreductase activity, acting
                     on NAD(P)H [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HWM60810.1"
                     /translation="MDRIRTAVIGTGFMGRVHLEALRRVENVDVVEVAATSLDKAREA
                     GAGYNVLNVTGDWHDVIRDPSIDAVHIATPNVLHFPIAKAALEAGKHVLCEKPLAMSI
                     AEAQELTELAVAKGLRGGLNHNLRYYPMVQQMRRMREAGDFGDILVVQGTYSQDWMLY
                     ESDWNWRVDPKVSGPSRVMADIGSHFFDMAEHVTGLKVSAVCSDLQIFHPTRKQPKGG
                     GETFSGKASSETVDTQIVTEDFGATLFRMGKARGVMTASQVSAGRKNGLVLEIYGTKG
                     GVSWRQERPEELWLGHRDAPNQVLLKDPSLMMDQARAFADFPGGHAEGYPDTFKQLFR
                     RFYASIADPTLTPDYPGFADGLRQMKILDAELASHKAHTWMDVPA"
     gene            5432..>5710
                     /locus_tag="VNN98_01600"
     CDS             5432..>5710
                     /locus_tag="VNN98_01600"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM60811.1"
                     /translation="MKWLIVPLLAAASFATAAESSYPALSYPDWAYAVPTPENEATAP
                     HDDGTLFSLPASEGRFTRSQINGANHTAPADWYPHDHPPMPKLVASGDT"
BASE COUNT         1091 a         1819 c         1769 g         1031 t
ORIGIN      
        1 ggcaggtctg cgtaacagcg gttaataagc aacagcggct gacaataagg gaaacgcaat
       61 gaaaagattc tggatcggcg ccgcgttgct ggctttgctg cccaccgcac tggcggcgca
      121 ggacaccccg cccgcgccgc cgcggacgca aggcgatacc cgtgaattcc cggcgcctcg
      181 gctggtggag gggcagagct gggaaacacg tccgccggaa aaggccgacg accacccgct
      241 gttcccgcta cagacccgcg cgccctacca caaaagcgcg tcttataaag tcaccaccat
      301 caccgacaag ctgcgcctac cctggtccat cgcgttcctg cccgacggca agatgctggt
      361 gaccgagaaa tatcccggcc atatgcgcat cgtcagcccc gacggcacgc tgtcggagcc
      421 gcttgccggc atcgacgaac tggcaccgcc ccgcaagctg ggcctgctgg atgtggtgct
      481 ggcgccgggc ttcgccaaaa accatcgcgt ctatttttcc tttttcgaga atctggggcc
      541 ggcctacagc aacacctatc tggcctatgg cacattggac gaagcggcgg gcgcgctgca
      601 cgaagtcaca gtgatctatc gcggcgtgcc cgcgatgccg gagaagaatt attccgccaa
      661 acagggcggg cgcatcgctt tcgcccgcga tggttcgctg ttcatgtcgg tgggggaccg
      721 cgacggcaac gacaaggcgg cctatgacgc cgcgctggcg cagaagctgg acaatgacgt
      781 gggcaagatc atccatttga cgccggacgg tacgcccgcg ccggacaatc ccttcctgca
      841 cacgccgggc gtgcgccccg agatctgggc ctatggcatt cgcagtccgg aaggcttcgc
      901 cttcgacgct tccggccggc tgtgggagac cgagcatggc ccgcgcggcg gtgacgagct
      961 gaaccagatc cagcgcggca agaattacgg ctggccgatg atcacccacg gcatcgatta
     1021 tcccggtggc cccgtcaacg aaggcatcat tgccaaggag ggcatggagc agccggtcta
     1081 ttactgggac ccggtgatcg cgccctccgg cctggcggtc tatcacggca agctgttccc
     1141 ccaatggaac ggcaatctgc tggcgggtgc gctgcgcgga ctgggcgtct accggttgga
     1201 gttgaagaac ggcaaggtgg tagcggagga gccattgctg agcgagttga agacgcgcat
     1261 ccgtgacgtg cgggccgggc cggacggcgc ggtctatgtc ctgaccgagc aaaaggccct
     1321 gctcaagctg acgcctccct gatctgctga cacgggactg tcacggtcgc cgccctatct
     1381 tggggcgcat gacggactct ggccgcatcc tggcaagcct tgccctggcg agcgcgttat
     1441 tgctgtccgc gcctgcccag gcacaaaatc aaccgcccgt caccgtcgcg gtccaggcca
     1501 gcggcgagtt gccgggcttc cgcatcgagg aggcttggcc ctatctcgcc gcacagatgg
     1561 ccggggcggg gattggctcc tggcactttg tgccccgcga catgggcgcc gccgcgccca
     1621 accggatcga atggaatttt gaagtcctgc cctatgccgg cggccaggtg cgccgcttct
     1681 ttcccatgcc ggagacgccc gggttggaca tgcatctgca ggggacgcat cgcctgatct
     1741 ccgcccaggt caagctttac ctggacggac aatatcagac cgtaaccgtc ggccaggaag
     1801 cggtacaggg cggcgacacc gatcccgacc ttggcgcctt cctggtccgg ctcacgcgca
     1861 ctctggaaag cggctaccgg gcaaccgaca tgacgcccgt gccccatcgg acgccctgac
     1921 atgcgcgtcc tgggggccct catcattatg ctgctgcttg ccctgcccgc gcgggccgag
     1981 gtgctgaact atgaggacat ttttcagagt cctaccctga ccggtgattg gaacggcgca
     2041 cgcaccaggc tggaagatcg cggcgtgcaa ctgggcggcg acgaaatcct cgagacgttg
     2101 ggtaatctgg actccggcaa gaggcgcggc gcggcggtgg aaggccgttt cgaactcttc
     2161 gccaatgtgg acctggataa agccctgggc tggcaaggcg cgatctttca cgccaatgcc
     2221 taccagattc atggtgaagg cctgtcggcg cacaatctgt acaacctgct gacggtgagc
     2281 aacatcgaag cgcgtcccgc cacaagactg tttgccttgt gggtacaaca gtcactattc
     2341 aacgacagtg tgtcgctgcg cgccggccag atcgccgccg atgacgaatt cttcgtcagc
     2401 caatatgcgc ctttgttcat caactcgacc ttcggctggc ccgccatcct ggggatcaac
     2461 ctgcccggcg gcggtcccgc ctatccggtc gcccggcccg gcgtgcgagc acggatcgcg
     2521 gtgtcgccgc gcctggtcct gtcggcggcg ctgttcagcg gcgatgcatc cgccgacgaa
     2581 accggattcg acttccacat caatggcgat gtcttcgcca tcagcgaact ggcctatagc
     2641 atgaccatgt ttgaactgcc cggcaccatg aaactgggca gctggattca cagcggccgt
     2701 ttcaccgacc agcgttttga tgcggcgcat gtctcgctgg ccgaccccgc ctccggcgcc
     2761 ccggcacagc atcgcggcga ctatggcggc tatttcatcc tcgaccagct gttgtggcgc
     2821 aaggacggca ccagcgatgc cggactgggc ggctttttcc gggtgggcgg caatccctcc
     2881 gaccgcaaca gaatcgaact tcatatggat agcggcctga cctatgccgc ccccttcggc
     2941 cgcgccaatg acaccatcgg catcggactg agctatgagc aggtcagcgc cacccaacgc
     3001 gacctgacgt tggactatcg ccgcctgacc gggacgatgc cggtcacgcc cagtttcgaa
     3061 tccgcactgg aaacctccta tcaggcgcag gtcgcgacct ggtggatcgt gcagcccgat
     3121 atacagtgga tcatccatcc cggcggaggg gtgctgaacc tgtcttcgcc gctttcaggc
     3181 catggtgcgg gtgcggtggt gctgggcctg cgcaccgccg tggcgcttta aagagccgaa
     3241 ggtctgttcc cggttgcaag ggccgggcta atggtctgaa atcggatcct taagccccgc
     3301 gcaggggcat caggagaacg tcatgaagac caaatcatga aaataggtgt gttcacgccg
     3361 ctgctgtcgg ctttgtcgct ggaccaggtg ctgaagaaac tgaaatcgct ggacatcgac
     3421 acggtggagt tcggcaccgg caattacccc ggcgacgccc atgccaaact atccatgctg
     3481 gacaatccgg ccgagcttgc gaccttcaaa agcaagatcg ccgatgccgg catgacgatt
     3541 tcggccctgt ccagccacgg caacccgctg catccggata aggaaatcgc tgccaaatat
     3601 gcgcagacca gccgcaggac catccttctg gctgagaagt tgggcgtgaa gacggtggtg
     3661 gatttctccg gctgcccagg cgatagcgcc aatgcgaaat ttcccaactg ggtcacctgt
     3721 tcctggccgc cggaatatct ggagattctg aactggcagt gggacgaggt cgtgacgccc
     3781 tactggaaga cgcacggcaa gttcgccgcc gaccatggcg tgaaggtcgc gatagaaatg
     3841 catcccggct ttgtcgttta caatcccgag actatgctgc ggctgcgcgc catcgccggg
     3901 tcctcggtgg gcgccaatct cgatcccagc catctattct ggcagggcat cgatcccatc
     3961 gtggcagtgc gcgaattggg cgaagccatc cattatgttc atgccaagga cacccagctc
     4021 ttccccacca acgtgacgcg caacggggtg ctggacacca agtcctacac cgatgaacgt
     4081 caccggtcct ggattttccg caccgtgggc tatggccaca gcgccgaatg gtggagcgaa
     4141 ttcatctcca ccttgcgcat gtacggctat gacaatgtcc tgtccatcga gcatgaggac
     4201 agcctgatgt cgcccgacga gggcctttcc aaggcggcgg cgctgctggc ccaggtgatc
     4261 atcaaggaaa agcccgccgc ggcctggtgg gtgtgatgga ccgtatccgc acagcggtga
     4321 tcggcaccgg ctttatgggc cgggtgcatc tggaagcgct gcgccgcgtt gaaaacgttg
     4381 atgtggtgga agtggctgcc acctccctgg acaaggcgcg cgaagcgggt gccggctaca
     4441 atgtgctgaa tgtcaccggc gactggcacg atgtgatccg tgacccttcg atcgacgcgg
     4501 ttcacattgc cacgcccaac gtattgcact ttcccatcgc caaggcggcg ctggaggccg
     4561 gcaaacatgt gctgtgtgaa aaaccgctgg cgatgtcgat tgcggaagcg caggaactga
     4621 ccgagctggc ggtggcaaaa gggttgcgcg gcggcctgaa ccacaatctg cgctattatc
     4681 ccatggtaca gcagatgcgc cgcatgcgcg aggccggcga cttcggcgat atcctggtag
     4741 tccagggcac ctattcccag gactggatgt tgtacgagag tgattggaac tggcgcgtag
     4801 accccaaggt cagcggaccg tcgcgggtga tggccgatat cggctcgcac tttttcgaca
     4861 tggccgagca tgtcaccgga ctgaaggtct cggcggtgtg cagcgatctg cagatattcc
     4921 atcccacccg caagcagccc aagggtggcg gcgaaacctt ttccggtaaa gcgagcagcg
     4981 agacggtgga cacccaaatc gtcaccgagg atttcggcgc caccctgttt cgcatgggca
     5041 aggcgcgcgg ggtgatgacc gccagccaag tttcggcggg gcgcaagaac gggctggtgc
     5101 tggaaatcta cggtaccaag ggcggcgtca gctggcgcca ggaacgcccg gaggaattgt
     5161 ggctgggaca ccgcgacgcc cccaaccagg tcttgctcaa ggacccgtcg ctgatgatgg
     5221 accaggcgcg cgcctttgcc gactttcccg gcggccacgc cgaaggctat cccgacactt
     5281 tcaagcagct gttccggcgc ttttatgcgt ccatcgccga tcccacgctg acgccggatt
     5341 accccgggtt cgccgacggc ctgaggcaaa tgaaaattct ggacgcggag cttgccagcc
     5401 acaaggccca tacctggatg gacgtaccgg cgtgaagtgg ctgattgtcc cactgctcgc
     5461 agcggcatct tttgcaaccg ctgcggagtc ttcttatccc gccctctctt atccagactg
     5521 ggcctatgcc gtgccgacac cggaaaacga ggctaccgct ccgcacgacg atggcacgct
     5581 attcagcctg ccggcttcgg agggccgttt cacccgcagc cagatcaacg gcgcgaacca
     5641 caccgccccc gccgactggt acccgcacga ccatccgccc atgccgaagc tggtggcaag
     5701 tggcgacacg
//
LOCUS       DATMDK010000081         3746 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_508339,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000081 DATMDK010000000
VERSION     DATMDK010000081.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3746)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3746)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3746
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_508339"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..757)
                     /locus_tag="VNN98_01605"
     CDS             complement(<1..757)
                     /locus_tag="VNN98_01605"
                     /inference="COORDINATES: protein motif:HMM:NF024674.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042578 - phosphoric ester hydrolase
                     activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00282 family metallophosphoesterase"
                     /protein_id="HWM60812.1"
                     /translation="MNILFLGDIIGKPGRDVVHAELPRLRDRLKLDFVIANGENAAGG
                     FGLTRAIAEEFFGMGIDVISTGNHWADQKEILTYIGTEDRILRPANYPPGTPGRGANL
                     YQTPAGSVLVVNAMGRVFMDALDDPFAAVERELSACPLGEGADVVVVDIHAEATSEKM
                     AMGHFCDGRASLVVGTHQHVPTGDAQILPGGTAYQTDAGACADYDSVIGMEKFEPIQR
                     FTKKMPTGRMTPALGPATLCAVFVETDRLTGLAL"
     gene            complement(754..1302)
                     /locus_tag="VNN98_01610"
     CDS             complement(754..1302)
                     /locus_tag="VNN98_01610"
                     /EC_number="6.3.3.2"
                     /inference="COORDINATES: protein motif:HMM:TIGR02727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030272 - 5-formyltetrahydrofolate
                     cyclo-ligase activity [Evidence IEA];
                     GO_process: GO:0006730 - one-carbon metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5-formyltetrahydrofolate cyclo-ligase"
                     /protein_id="HWM60813.1"
                     /translation="MTSFDKSQLRHAAREYRKALMHLGFARKVARHAEALNIAKGMVV
                     GGYHALPEEADPSLLLEQLVALGCHIAFPRVASKGLPLEFHRVPDGEVLAPGAFGIHE
                     PLDSWPRAIPHVLLVPLLAFDAVGHRLGYGGGFYDRTLAQLKVPAIGIAYAGQEMASI
                     PHEAHDRTLDMVLTERGVRRFR"
     gene            complement(1488..1642)
                     /gene="ssrS"
                     /locus_tag="VNN98_01615"
     ncRNA           complement(1488..1642)
                     /ncRNA_class="other"
                     /gene="ssrS"
                     /locus_tag="VNN98_01615"
                     /product="6S RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00013"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00013"
     gene            complement(1655..2002)
                     /locus_tag="VNN98_01620"
     CDS             complement(1655..2002)
                     /locus_tag="VNN98_01620"
                     /inference="COORDINATES: protein motif:HMM:NF017016.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000917 - division septum assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein ZapA"
                     /protein_id="HWM60814.1"
                     /translation="MPLVNVMVNSRAYTIACDEGEEEHLKQLAAVVDTKAREVLGSVG
                     QVGDARMLLMAALLIADEHNELTGKIAAEGTGEDEKKSLHLRAEQAEGAAADALESAA
                     KRLEDIAERLAHA"
     gene            complement(2012..2275)
                     /locus_tag="VNN98_01625"
     CDS             complement(2012..2275)
                     /locus_tag="VNN98_01625"
                     /inference="COORDINATES: protein motif:HMM:NF025122.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4164 family protein"
                     /protein_id="HWM60815.1"
                     /translation="MSRLDLAQNRFKTALEALENAAGSVGESLDSAAKLPERIAELEV
                     ERKKLLGRIAELEDEVAALSGLTEEVEGRLDGAIGEIRAVLAR"
     gene            2422..>3746
                     /locus_tag="VNN98_01630"
     CDS             2422..>3746
                     /locus_tag="VNN98_01630"
                     /inference="COORDINATES: protein motif:HMM:NF012670.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008661 - 1-deoxy-D-xylulose-5-phosphate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0016114 - terpenoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate synthase
                     N-terminal domain-containing protein"
                     /protein_id="HWM60816.1"
                     /translation="MTQPDQAPPDQHNVRRLANAIRALSMDAVETAKSGHPGLPMGMA
                     DVATVLFSRFLKFNAAQPGWPDRDRFVLSAGHGSMLLYSLLWLTGYPKVTTQDLKTFR
                     KVGSPAAGHPEHGDLPGIETTTGPLGQGIANAVGMALAERILNARFGDELVSHKTYVI
                     ASDGDLMEGISHEAIGLAGHLKLSGLIVLWDHNNITIDGALSLSDSTNQAERFQAGGW
                     VVDSCDGHDAADIFRALEKAQSADRPVMIACRTIIGFGLPGREGTQKAHSDAPGADVV
                     AGARKELGWEFPPFIVPDDLLNQWRAIGQTGAKAFDAWQTRKTASSRAKEFDDTINDV
                     IPASLSPALTALKEKLSTEKPAAGTRKMSEKALEVINAELQNTVGGSADLTPSNNTKT
                     KGLVEISPGNFAGRYIHYGIREHGMCAAMNGMALHGGVIPYGGTFMVFS"
BASE COUNT          701 a         1285 c         1116 g          644 t
ORIGIN      
        1 gcagagccag gccggtcagc cggtcggtct ccacgaagac ggcacagagg gtcgccgggc
       61 cgagggctgg cgtcatgcgc cccgtaggca tcttcttggt gaagcgctga atcggctcga
      121 acttctccat cccgatcacc gaatcataat cggcgcaggc cccggcatcg gtctgatagg
      181 cggtaccgcc aggcaggatc tgggcgtcgc cagtggggac atgctgatgc gtgcccacca
      241 ccaggctggc gcggccgtcg cagaaatggc ccatcgccat tttctcactc gtcgcctcgg
      301 cgtggatgtc caccacaaca acatcggcgc cttcgcccaa cgggcaggcg gaaagctccc
      361 gctccaccgc cgcgaacgga tcgtccagcg catccatgaa gacgcggccc atggcattga
      421 ccaccagcac gctgccggcg ggggtctgat agagattggc gccgcgccca ggcgtgcccg
      481 gcggatagtt ggcgggccgc aggatgcgat cctctgtgcc gatgtaagtg aggatttcct
      541 tctggtcggc ccagtgattg ccggtggaaa tcacatcgat gcccataccg aagaattcct
      601 cggcaatggc gcgggtcagg ccgaaaccgc ccgccgcatt ctcgccattg gcgatgacga
      661 agtcgagttt caaccggtca cgcagccgcg gcagctcagc atgcaccacg tcgcggcccg
      721 gtttgccgat gatatcgccc aggaaaagaa tgttcatcga aagcgcctga cgccccgttc
      781 ggtaaggacc atatccaggg tcctatcatg cgcttcatgg ggaatcgagg ccatctcctg
      841 ccccgcatag gcgatgccga tcgccggcac tttgagctgc gcaagcgtgc ggtcgtaaaa
      901 gccgccgcca tatcccagcc ggtgacccac cgcgtcgaac gccaacagcg gcaccagcag
      961 cacatggggg atggcgcgcg gccaactgtc caatggttcg tgaataccga aggcgcccgg
     1021 cgccagcacc tcaccatccg gcacacggtg gaattccagc ggcaagccct tgcttgccac
     1081 ccgcgggaaa gcaatgtggc agcccagcgc caccaactgt tccagcagca gcgaaggatc
     1141 ggcttcttcg ggcagggcgt gatagccgcc caccaccata cccttggcaa tattcagcgc
     1201 ctcggcgtgg cgcgcaacct tccgcgcaaa gccgagatgc atcagcgcct tgcggtactc
     1261 gcgtgcggcg tggcggagtt gggatttgtc aaaactggtc aacagtttga tccatgtctg
     1321 tgatttgcct cgcgcgagcc gcgcattccg cgcggcgacc cgcagcatcc gacagcttcc
     1381 tcccccttcg gcgcgaagcg ccacggaagg gggaggtggc ggcaaggagg tgtttgcgga
     1441 acgcaaaccc gacttgctgc cggaggggga tcatcaaaat aaagcggacg gaaccgcgtt
     1501 cgccgttggt attggatctc atgggcctgc aagtgcaggt gggcgtcgtg tgcccgggac
     1561 cacgatccca ggcagggaca actcccgatg agtacaatta aggcccctgg gcatcgcaac
     1621 ctgacgcacg aggcagtatc cgtccgcccc taacttaggc gtgcgccaag cgctccgcaa
     1681 tgtcttccag ccttttcgcg gcgctttcca gcgcgtcagc ggcggcgcct tcggcctgtt
     1741 ccgcccgcag atgcaggctt ttcttctcgt cttcgccggt tccttcagcg gcaatcttgc
     1801 cggtcagctc gttatgttcg tcggcgatca gcagcgccgc catcaacagc atgcgcgcat
     1861 cgcccacctg ccccaccgac cccagcacct cgcgcgcctt ggtatcgacg acggcggcga
     1921 gctgtttgag atgctcctcc tcgccctcgt cgcaagcgat agtataagcc cggctgttca
     1981 ccataacgtt cacaagaggc atgggcgtct cctagcgcgc cagcacggcg cggatttcgc
     2041 cgatggcgcc atccagccgg ccttccactt cctcggtcag gcccgaaagc gcggcgactt
     2101 cgtcctccag ttccgcgatg cggcccagca gtttcttgcg ctcgacttcc agttcagcga
     2161 tgcgttccgg cagtttggcg gctgagtcca gactttcgcc caccgatccg gccgcgtttt
     2221 ccagggcttc gagggccgtt ttaaagcggt tttgcgccaa atccagccgg ctcatgcgcg
     2281 cctcttcgct caatttcccc aagaccttag gcgttccagg gaaatcgggt caaccgatac
     2341 gcgttagcgg catgccccca gcccttgacg gaggtgcggg ccgctcgcta aggccaccca
     2401 ccaccacgcc gggaaaccca aatgacccag cccgatcagg ccccccctga ccagcataac
     2461 gtccgccgcc tcgccaatgc catccgggcg ctgtccatgg acgcggtgga gaccgccaaa
     2521 tccggccatc ccggcctgcc catgggcatg gccgatgttg ccaccgtgct gttttcccgc
     2581 ttcctgaaat tcaacgccgc ccagccgggc tggcccgacc gtgaccgttt tgtgctttcg
     2641 gccggccatg gctcgatgct gctctattcc ctgctgtggc tgaccggcta tcccaaggtc
     2701 accacccagg acctgaagac cttccgcaaa gtcggcagcc ctgccgccgg ccatcccgag
     2761 catggcgacc tgcccggtat tgaaaccacc accggccccc tgggccaagg catcgccaat
     2821 gccgtgggca tggccttggc cgagcgcatt ctgaacgccc gcttcggcga cgaactggtc
     2881 agccacaaga cctatgtcat cgcctcggac ggcgacctga tggaaggcat cagccatgag
     2941 gccatcgggc tggccgggca tctgaagctc tcgggcctga tcgtgttgtg ggaccataac
     3001 aacatcacca tcgacggcgc cctgagcctg tcggactcca ccaaccaggc cgaacgcttc
     3061 caggccggcg gctgggtggt ggacagttgc gacggccatg acgccgccga catcttccgc
     3121 gccctggaaa aggcccaatc cgccgaccgc ccggtgatga tcgcctgccg caccatcatc
     3181 ggcttcggcc tgccgggccg cgaaggcact cagaaagcgc atagcgatgc gccgggcgcc
     3241 gacgtggtgg caggcgcccg caaggaactg ggctgggaat tcccgccctt tatcgtgccc
     3301 gacgatctgc tgaaccaatg gcgcgccatc ggccagaccg gcgccaaggc gtttgatgcc
     3361 tggcagacgc gcaaaactgc cagcagccgt gccaaggaat tcgacgacac catcaacgac
     3421 gtgatccccg cttctctgtc gccggcgctg acggcgctga aagaaaagct gagcaccgaa
     3481 aagcccgccg ccggtacccg caagatgtcg gaaaaagcgc tggaggtgat caacgccgaa
     3541 ttgcagaaca ccgtcggcgg cagcgccgac ctgacgccgt ccaacaacac aaaaaccaaa
     3601 ggcctagtgg agatcagccc cggcaatttc gccggccgct atatccatta cggcatccgc
     3661 gagcacggca tgtgcgccgc gatgaacggc atggcgctgc atggcggcgt tatcccgtat
     3721 ggcggcacct tcatggtgtt cagcga
//
LOCUS       DATMDK010000082         2635 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1871120,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000082 DATMDK010000000
VERSION     DATMDK010000082.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2635)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2635)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2635
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1871120"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(129..362)
                     /locus_tag="VNN98_01635"
     CDS             complement(129..362)
                     /locus_tag="VNN98_01635"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM60817.1"
                     /translation="MPRYTCKRYRRRAPGEATGTLIDALTFSATSAAEAEDKIRRNAL
                     FRIADMDWEKDFATLEDESGTVLVTWLRGVLHA"
     gene            complement(362..748)
                     /locus_tag="VNN98_01640"
     CDS             complement(362..748)
                     /locus_tag="VNN98_01640"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM60818.1"
                     /translation="MPRVSAAFFMTGALCLLIGMCWGMAMAGAQNFALAPAHAHLNLL
                     GWVTMSIYGTFYALTRETMSPRLAWINYGCATLGVAIMIPTLAVFLTTNNPALEPVIG
                     IGSLLNVIALLTFALSAFRELKRSRA"
     gene            complement(771..1544)
                     /gene="lipB"
                     /locus_tag="VNN98_01645"
     CDS             complement(771..1544)
                     /gene="lipB"
                     /locus_tag="VNN98_01645"
                     /EC_number="2.3.1.181"
                     /inference="COORDINATES: protein motif:HMM:NF010921.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0033819 - lipoyl(octanoyl) transferase
                     activity [Evidence IEA];
                     GO_process: GO:0009249 - protein lipoylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipoyl(octanoyl) transferase LipB"
                     /protein_id="HWM60819.1"
                     /translation="MGITERPSTTEISTLTLSTLEAMQRSLTSVEIPARVPEHGFGKL
                     NLDAPVQSQVEWKVSDQPVAYPQALAEMGARAAAIAEDTAGEQVWLLEHPPIYTAGTS
                     AKDADLIEARFPVYRTGRGGQFTYHGPGQRVGYVMLDLKTRKPDVRAYVRDLEQWLIE
                     TLAQLGVKGERREGRVGIWVQRGQREDKIAALGVRIKRWVTLHGVALNVDPDLSHFSG
                     IVPCGVRAHGVTSLADLGIVATMADVDMALKQNFKKIFG"
     gene            1477..1710
                     /locus_tag="VNN98_01650"
     CDS             1477..1710
                     /locus_tag="VNN98_01650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013079925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FliM/FliN family flagellar motor switch protein"
                     /protein_id="HWM60820.1"
                     /translation="MASNVDNVKVEISVVLGRSVIPMHQLLRMGRGAVIELDSHQDDP
                     VTILANDKPVAKGEIQIQGDKIAVSVVELLKGY"
     gene            1802..2305
                     /locus_tag="VNN98_01655"
     CDS             1802..2305
                     /locus_tag="VNN98_01655"
                     /inference="COORDINATES: protein motif:HMM:NF024638.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HWM60821.1"
                     /translation="MLPLVLNPVNLKAGLAGRGPERDRRAALLAEAGVEARLLPQTVP
                     DDMLASLQVLFVAGLPEGEARDLAVRARALGVLVNVEDVLPLCDFHVPAIVRRGDLLL
                     TASTGGQVPGLARALRESLADQFGPEWTVRLKELGAARAKWRSAGLTPREVSQNVREL
                     IVRMGWL"
     gene            2302..>2635
                     /locus_tag="VNN98_01660"
     CDS             2302..>2635
                     /locus_tag="VNN98_01660"
                     /inference="COORDINATES: protein motif:HMM:NF013658.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoadenosine phosphosulfate reductase family
                     protein"
                     /protein_id="HWM60822.1"
                     /translation="MSNVSVIDTKRGIAPRPGVTDAAVAAHLKELQDKAAGRDAHGIL
                     ELALTGEFAGKTAVVSSFGAESAVLLKLVADIDPGTPILFLNTGKLFGETLRYRDRLQ
                     DVLGLGDVR"
BASE COUNT          468 a          820 c          851 g          496 t
ORIGIN      
        1 agaaggggtt tatccgcaag ccgtcgcttt aactctttgt cattcccgcg aaagcgggaa
       61 tccaacttcg ggcattcgcc gccggataga aagttggatg cccgctttcg cgggcatgac
      121 aacgagggtc aagcgtgtag gacaccgcgc agccacgtca ccagcacagt gccggattca
      181 tcctccaggg tggcaaagtc tttttcccaa tccatatctg caatgcgaaa cagcgcgttg
      241 cgccgaattt tatcctcggc ttcagcggcg cttgtcgcgg agaaggtcag cgcatcgata
      301 agggtgcccg tggcctcacc aggcgcgcga cggcgatagc gcttgcaggt gtagcgcggc
      361 atcaggcgcg cgaacgcttc aactcgcgaa acgcggaaag cgcgaaggtc agcagcgcaa
      421 tgacgttgag caggctgccg atgccgatca ctggctccag tgccgggttg ttggtggtga
      481 gaaagaccgc cagggtcgga atcatgatcg ccacgcccaa ggtggcgcag ccataattga
      541 tccaggccag gcgcggcgac atggtctcgc gcgtcagggc atagaaggtg ccgtagatcg
      601 acatggtcac ccagcccagc aggttgagat gggcatgcgc cggtgccagc gcgaaattct
      661 gggcgcccgc catcgccatg ccccaacaca ttccgatcag caagcacaga gcgcccgtca
      721 tgaaaaaagc agcagatacg cgcggcatga attcccccct tgttttatga ctagccaaat
      781 atctttttga aattctgttt cagggccatg tcgacatcgg ccatggtggc gacaataccc
      841 agatcggcca ggctggtgac gccatgggcg cgcacgccgc acggcacgat gccggaaaaa
      901 tggctgaggt cgggatccac gttcagcgcc acgccatgca gggtgaccca gcgcttgatg
      961 cgcaccccca gggcggcgat cttgtcttcg cgttggccac gttgcaccca gatgccgacc
     1021 cggccctcgc gccgctcgcc ctttacgccc aactgcgcca gggtctcgat cagccattgc
     1081 tccaggtcgc ggacataggc gcgcacgtcc ggcttgcggg tcttcaggtc cagcatgaca
     1141 tagcccaccc gctggccggg gccgtgatag gtgaactggc cgccgcgccc ggtgcgatag
     1201 accggaaagc gcgcctcgat caggtcggcg tctttggcgc tggtgccggc ggtgtagatg
     1261 gggggatgtt ccagcagcca gacttgttcg cctgctgtgt cttccgcgat agcggcggcg
     1321 cgggccccca tttcggccag ggcttggggg taggcgaccg gctggtcgct cactttccac
     1381 tccacttggc tctgaacggg ggcgtccaaa ttaagctttc cgaaaccatg ttccggcacc
     1441 cttgccggga tttccacaga tgtaaggctc cgttgcatgg cttccaatgt cgataatgtc
     1501 aaagtcgaaa tctcggtggt gctgggccgt tcggtgatcc ccatgcacca gctgctgcgt
     1561 atgggccgcg gcgccgttat cgagctggac agccatcagg atgacccggt gaccatcctg
     1621 gccaatgaca agccggtggc caaaggcgaa atccagattc agggcgataa gatcgccgtt
     1681 tccgtggtgg aactgctcaa gggctattaa tacgtcaaat caggcgtaga attatttatt
     1741 ccccactcaa ttcttgcatt ttagcccttg cgggcatacc tctctgctcc tgagagggtc
     1801 aatgcttccc cttgtcctga atcccgtcaa tctcaaggcc ggcctggccg gccgggggcc
     1861 tgagcgcgac cgcagggccg ccctgctggc cgaggcgggg gttgaggcgc ggctgctgcc
     1921 ccagaccgtc cctgacgaca tgctggcctc cctgcaggtc ctgtttgtgg cggggctccc
     1981 cgagggcgag gcccgcgatc tggccgtccg ggcccgggcg ctgggcgtgc tggtcaatgt
     2041 cgaggacgtg ctgccgctgt gcgatttcca cgtcccggcc attgtgcgcc ggggcgatct
     2101 gctgctgacc gcctccaccg gcggacaggt gccgggtctg gcgcgggccc tgcgcgaaag
     2161 cctggccgac caattcggtc cggaatggac ggtgcggctg aaggaactgg gcgcggcccg
     2221 cgccaaatgg cgctccgccg gcctgacgcc gcgtgaggtt tcccaaaatg tgcgcgaatt
     2281 gatcgtgcgg atgggctggt tatgagcaac gtctccgtca tcgacaccaa gcgcgggatc
     2341 gcgccgcggc ccggcgtcac cgacgccgct gtggccgcgc atctgaagga attgcaggac
     2401 aaggccgcgg gccgcgacgc ccacggcatt ctggaactgg cgctgaccgg cgagttcgcc
     2461 ggcaagacgg cggtggtgtc gtccttcggc gcagaatcgg cggtgctgct gaagctggtg
     2521 gccgacatcg atccgggtac gcccatcctg ttcctcaaca ccggcaagct gttcggcgag
     2581 accctgcggt atcgcgaccg gctgcaggat gtgttgggcc tgggcgatgt ccgct
//
LOCUS       DATMDK010000083         2611 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2327665,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000083 DATMDK010000000
VERSION     DATMDK010000083.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2611)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2611)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2611
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2327665"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1009)
                     /locus_tag="VNN98_01665"
     CDS             complement(<1..1009)
                     /locus_tag="VNN98_01665"
                     /inference="COORDINATES: protein motif:HMM:NF014717.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HWM60823.1"
                     /translation="MRNLRLALRFARRELRGGFAGFRIFFLCLMLGSAAIAGVESLSD
                     AFLTGLQDQGQVLLGGDVSVNLVHRPANPGELAFLNAQGRVSQTLSMRAMAYAQGNNA
                     RQLVELKGVDDRWPLFGAPKLTPVQPLHDVLACEDDGICGAAAEQTLLDRLHVRRGDL
                     IKLGDATFRIMAALDSEPDRISTGFSLGPHLLISSKGLPATGLVTPESLVDYTYRIAL
                     KDVPSDPVQSRAAIAAFRDQAQRRFPDAGWNIRDRGDAAPGIKRFVEQLTMFLTLVGL
                     VALGVGGVGAGQAILAFLDRKRADIAILKTLGASGGFVFLVFFLQVMAVAVLATLLGA
                     AL"
     gene            complement(1002..1682)
                     /locus_tag="VNN98_01670"
     CDS             complement(1002..1682)
                     /locus_tag="VNN98_01670"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HWM60824.1"
                     /translation="MNNPPPALILQDISLSLKSLAGPVDILSGVSLSIAAGETVALTG
                     PSGSGKSSLLMVAAGLEKPTSGRATLTGTDITHMGEDALARFRLGRVGVVFQSFHLIP
                     TMTALENVAVPLELMGVADAFDRAERELRAVGLILRTDHYPGQLSGGEQQRVALARAM
                     APRPQILFADEPTGNLDSATGAGVADLLFALNAERGATLFLVTHEESLARRCGRVLRM
                     ADGKIAGA"
     gene            1704..2330
                     /locus_tag="VNN98_01675"
     CDS             1704..2330
                     /locus_tag="VNN98_01675"
                     /inference="COORDINATES: protein motif:HMM:NF012863.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arylesterase"
                     /protein_id="HWM60825.1"
                     /translation="MTCKFKALLNIVLLFIMAGAGPAVAAPVKILAMGTSLTQGYGLP
                     PGTEFTVQLQAALKKSGVDAVVTNAGVSGDTSAGGLARLDWSLADHPDAVILELGSND
                     MLRGIAPVETEKNLRAILDRLKAAHVKVLLTGMHAQRNLGADYVKQFDAIYPRLAKDT
                     HVLFYPFILDGVALNPKLNQADGMHPNPAGVKIIVARILPLVKKLVKS"
     gene            2330..>2611
                     /locus_tag="VNN98_01680"
     CDS             2330..>2611
                     /locus_tag="VNN98_01680"
                     /inference="COORDINATES: protein motif:HMM:NF015013.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid II flippase MurJ"
                     /protein_id="HWM60826.1"
                     /translation="MLKKLLSVGGFTLASRITGFTRDMVLAWTLGSGILSDAFFVAFI
                     FPNNFRVIFGEGTINPAFLPRYAALRARGEDKAAAKFANEIFAWQMAAQI"
BASE COUNT          492 a          847 c          835 g          437 t
ORIGIN      
        1 ccagcgctgc acccagcaaa gtggccagca ccgccaccgc catcacctgc aggaaaaaca
       61 ccagaaagac gaagccgccg ctggcgccca gggttttcag aatcgcgatg tcggcgcgtt
      121 tgcggtccag gaaggccagg atcgcctggc ccgcgcccac cccgcccaca cccagcgcca
      181 ccagtcccac caaagtcagg aacatggtga gctgttcgac aaaacgcttg atgccgggag
      241 cggcgtcgcc gcgatcgcgg atgttccagc cggcgtccgg aaagcgccgc tgcgcctggt
      301 cgcggaaagc ggcgatggcg gcgcgcgatt gtaccggatc gctgggtacg tctttcagcg
      361 cgatacggta ggtgtaatcc accaggcttt ccggtgtgac cagtccggtg gcgggcagtc
      421 ccttcgatga aatcagcaaa tgcggaccca gcgaaaagcc ggtggagatg cggtcgggct
      481 cgctgtccag cgccgccatg atgcgaaaag tggcgtcgcc cagtttgatc aggtcgccac
      541 gccgcacatg cagccggtcc agcaaggtct gttccgccgc cgcgccgcaa atcccgtcat
      601 cctcgcaggc cagcacgtcg tgcaggggct gtaccggagt gagtttggga gcgccgaaca
      661 agggccagcg gtcatccacg cctttcagct cgaccagctg gcgcgcgttg ttgccctgcg
      721 cgtaagccat ggcgcgcatg gaaagcgttt gggaaacgcg gccctgcgcg ttcagaaagg
      781 caagttcgcc ggggttggcg ggccggtgca ccagattgac cgagacgtcg ccgcccagca
      841 gcacctgacc ctggtcctgc aagccggtga gaaaagcgtc gctcagcgat tccacgccgg
      901 cgatggcggc ggagcccagc atcaggcaga gaaagaaaat gcgaaaaccg gcaaagccgc
      961 cgcgcagctc gcgccgcgca aagcgcaggg ccagccgcag attacgcacc ggcgatcttt
     1021 ccgtccgcca tgcgcaacac ccggccgcag cgccgcgcca ggctttcttc atgcgtcacc
     1081 aaaaacaggg tggcgccgcg ctcggcattc agggcaaaga gcaggtcggc cacgcccgcg
     1141 ccggtggcgc tgtcgagatt gccggtgggt tcgtccgcga acaggatctg cggtctcggc
     1201 gccatggcgc gtgccagcgc gacgcgctgc tgctcgccgc ccgacagttg cccgggatag
     1261 tgatcggtgc gcaggatcag ccccacggcg cgcaattcgc gctccgctct gtcgaaggcg
     1321 tctgccacgc ccatcagctc cagcggcacg gcgacattct ccagcgctgt catggtgggg
     1381 atcaggtgga agctctggaa taccaccccc acgcgcccca gccgaaagcg cgccagcgcg
     1441 tcttcgccca tatgggtgat gtcggtgccg gtgagggtcg cgcgccccga tgtgggcttt
     1501 tccagccccg ccgccaccat caaaagcgaa gacttgcccg agccggaagg gccggtcagc
     1561 gccaccgttt cccccgctgc gatggacagg gaaacgcccg acaggatgtc caccggtccg
     1621 gccaggcttt tcaagctcag gcttatgtct tgaaggatga gggcgggcgg gggattgttc
     1681 atgtcgactc ggataaaatg acgatgacct gcaaattcaa ggcactgctt aacatagttc
     1741 tgctgttcat catggcggga gcggggccgg ctgtggcggc gcctgtaaaa attctggcga
     1801 tgggcaccag cctgacccag ggctatggcc tgccgccggg caccgaattc accgtgcagc
     1861 ttcaagcggc gctgaagaaa agcggggttg atgcggtggt gaccaatgcg ggtgtttccg
     1921 gcgacacttc ggccggcggc ttggcgcggc tggactggtc gctggccgat catcccgatg
     1981 cggtgattct ggaactgggc tccaacgaca tgctgcgcgg catcgcgccg gtggaaaccg
     2041 aaaagaatct gcgcgccatc ctggaccggc tgaaagcggc gcacgtcaag gtgctgctga
     2101 ccggcatgca tgcccagcgc aatctgggcg ccgattatgt caagcagttc gacgccatct
     2161 atccgcgcct cgccaaggat acccatgtgc tattctatcc cttcatcctg gacggcgtgg
     2221 cgttgaaccc caaactcaac caggcggacg gcatgcatcc caatccggcg ggcgtgaaga
     2281 tcatcgtggc gcgcatcctg ccgctggtga agaagctggt aaaaagctga tgctgaaaaa
     2341 actgctctcg gtcggcggct ttacgctggc ctcgcgcatc accggcttca cccgcgacat
     2401 ggtgctggcc tggacattgg gcagcggcat cttgtcggac gccttttttg tcgctttcat
     2461 cttccccaac aatttccgcg tcatcttcgg cgaaggcacc atcaaccccg ctttcctccc
     2521 gcgctatgcc gcgcttcggg ccaggggcga ggacaaggcg gccgcgaaat tcgccaacga
     2581 gatattcgcc tggcagatgg cggcgcagat c
//
LOCUS       DATMDK010000084         3468 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2786852,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000084 DATMDK010000000
VERSION     DATMDK010000084.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3468)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3468)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3468
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2786852"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(112..606)
                     /locus_tag="VNN98_01685"
     CDS             complement(112..606)
                     /locus_tag="VNN98_01685"
                     /inference="COORDINATES: protein motif:HMM:NF009932.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ureidoglycolate lyase"
                     /protein_id="HWM60827.1"
                     /translation="MTRKLTPVPLTAEAFAPFGDVIEARGIPRQINYGVTQRFHDLAG
                     IDAGDGRVSVNIFRSQPIDFPFVLKLMENHPLSSQGFVPLSGRPFIVVVAPAGPFDPA
                     AVRAFLALPQQGVNFRKGTWHHFNLALEAQSDFLVIDREGPGPNCEEVTLEDTVLLAP
                     QAGL"
     gene            complement(603..1787)
                     /locus_tag="VNN98_01690"
     CDS             complement(603..1787)
                     /locus_tag="VNN98_01690"
                     /inference="COORDINATES: protein motif:HMM:NF017945.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="urate hydroxylase PuuD"
                     /protein_id="HWM60828.1"
                     /translation="MSDFIPWLELALRWLHVITGIAWIGASFYFIWLDGNIRPAEGKP
                     LVAGELWAVHGGGFYHNQKYLVAPAELPPHLHWFKYEAYFTWISGFLLLAVIYYAGAD
                     AFLIDSAKLALTVPQAILISLGFLAGGWLVYDGLCRSPLGRDGRVFGAVWFVLLTGAA
                     YALTRIFSDRAAFLHVGAVIGTAMVGNVFFVIIPNQKKVVAAMLAGHLPEAWLGREAK
                     QRSLHNNYMTLPVILCMISNHFPILFGNPANWLVLAALSLSGLIIRHFFNLRHKGVLK
                     WDLAVGAAVIFVFTMLIANDVQRRGRQAPAASPVVFATVRALIDKHCIACHSAAPVHA
                     GITAPPAGLNFSRDDMVVKNAARIRMQAVDSKTMPLGNETGMTDTERKTLGAWIAQGA
                     RP"
     gene            complement(1780..2778)
                     /gene="xdhC"
                     /locus_tag="VNN98_01695"
     CDS             complement(1780..2778)
                     /gene="xdhC"
                     /locus_tag="VNN98_01695"
                     /inference="COORDINATES: protein motif:HMM:TIGR02964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043546 - molybdopterin cofactor binding
                     [Evidence IEA];
                     GO_process: GO:0009115 - xanthine catabolic process
                     [Evidence IEA];
                     GO_process: GO:0065003 - protein-containing complex
                     assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="xanthine dehydrogenase accessory protein XdhC"
                     /protein_id="HWM60829.1"
                     /translation="MSSWWSLAAARIAEAKPVVLVTICAVEGSAPREAGAKMLVWDDA
                     QDGTVGGGKLEFTIVDQARRMLAGDVPWRIQHYPLGPLLGQCCGGRVGILLERLGPES
                     AGWLGVIAAAERTGKPYTVVSRLGAGGIAREISPCDAVVADVPLLVRAPPGEVIATRI
                     GEGFTLIEHVRPQPRLLMFGAGHVGQALAPIMRTLPFDLTWLDLRPDFAGTGATVTGD
                     LLGAVRTAPPGSFALIFTHSHDLDYQLCRAVLARGDFRYCGLIGSATKRTRFEKRLAV
                     DGVARSGLICPIGEIGLASKVPQVMAVAIAAELLLELQKVAIQALPQKAGAKAGNV"
     gene            complement(2775..>3468)
                     /locus_tag="VNN98_01700"
     CDS             complement(2775..>3468)
                     /locus_tag="VNN98_01700"
                     /inference="COORDINATES: protein motif:HMM:NF042649.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="molybdopterin cofactor-binding domain-containing
                     protein"
                     /protein_id="HWM60830.1"
                     /translation="RLTGLAAERFSCAPESIVFRDGRVHGGAASLSFAELARAAHLAR
                     ISLSSTGFYKTPKIHYSRAEHRGRPFYYYAYGAAVSEVAIDTLTGENRVLRVDLIHDV
                     GRSINPALDLGQIEGGFVQGMGWLTSEELWFDAAGNLRTHAPSTYKIPTASDRPPIFN
                     MELWKGENREETVHRSKAVGEPPLMLALSVFSALTDAVASVGDRKTLPDLDAPATPER
                     ILLAVEKLRPVL"
BASE COUNT          697 a         1126 c         1099 g          546 t
ORIGIN      
        1 catcctccac cagtagcacg ccgtcgggat aataggagtc cagcggcgcc cgcgcgggat
       61 cgggctcgtc catcagatgg aacagttggg cgcgataggc ctggcgtgcc atcaaagacc
      121 ggcctgcgga gcgagaagga cggtgtcttc cagcgtcacc tcttcacaat ttggacccgg
      181 accttcgcgg tcgatcacca gaaaatcgct ttgcgcctcc agcgccagat tgaaatggtg
      241 ccaggtgcct ttgcggaaat tgaccccctg ctgcggcaac gccagaaagg cgcggacagc
      301 ggcgggatcg aaaggccctg cgggcgcaac cacaacaatg aagggcctgc cgctgagcgg
      361 cacgaagccc tggctggaca gcggatgatt ttccatcagt ttcaggacaa agggaaaatc
      421 gatcggctgc gagcggaaaa tgttgacgct cactcgtccg tcgcccgcat cgatcccggc
      481 cagatcgtga aagcgctggg ttacgccgta attgatctgg cggggaatgc cccgcgcctc
      541 gatcacatcg ccgaaaggcg caaaagcctc tgccgtcagc ggtaccggcg tcagcttgcg
      601 tgtcatggcc gcgccccttg cgcgatccag gcgcccaagg tcttgcgctc ggtatcggtc
      661 atgccggtct cgttgcccag cggcatggtc ttgctgtcga ccgcctgcat gcggatgcgc
      721 gccgcattct tcaccaccat atcatcgcgg ctgaaattca ggccggccgg cggcgccgtg
      781 attccggcgt gaacgggggc ggcgctgtga caggcgatgc aatgcttgtc gatcagcgcc
      841 cgcaccgtcg cgaaaaccac cggcgatgcg gccggcgcct ggcggccgcg gcgctgcacg
      901 tcattggcga tcaacatggt gaaaacaaag atgacggccg cgccgaccgc cagatcccat
      961 ttcaacacgc ctttgtgacg cagattgaag aagtgccgga ttatcaaccc ggacagcgac
     1021 agcgccgcca gcaccagcca attggcgggg ttgccgaaca ggatgggaaa atgattgctg
     1081 atcatgcaga gaatgaccgg cagggtcatg taattgttgt gcagcgagcg ctgcttggcc
     1141 tcgcgcccca gccaggcttc ggggaggtgg ccggccagca tggcggccac gactttcttc
     1201 tggttgggaa tgatgacgaa gaagacgttg cctaccatgg cggtgccgat gacggcgccg
     1261 acatgcagga aggcggcgcg gtcgctgaag atgcgggtca gcgcataggc cgcaccggtc
     1321 agcagcacaa accagaccgc accgaacacg cggccgtcgc gccccagggg agagcggcac
     1381 agcccgtcat agaccagcca gccccccgcc aggaatccca gcgaaataag aatggcctgc
     1441 ggcaccgtca gcgccagctt ggcgctatcg atcaggaacg cgtcggcgcc ggcataatag
     1501 atcaccgcca acaacagaaa gccgctgatc caggtaaagt aagcttcgta tttgaaccag
     1561 tgcagatgcg gcggcagttc ggcgggcgcc accaggtatt tctggttgtg atagaagccg
     1621 ccgccatgca ccgcccacag ctcgccggcc accagcggct taccttcggc ggggcggatg
     1681 ttgccgtcca gccagatgaa atagaaggag gcgccgatcc aggcgatgcc ggttatgaca
     1741 tgcagccagc gcagcgccag ttcgagccaa ggaatgaaat cagacattac cggcctttgc
     1801 gccggccttt tgcggcaagg cctggatggc caccttttgc agctccaaca acaactccgc
     1861 ggcaatcgcc accgccatca cctgcggcac tttcgaggcc aggccgattt cgcctatggg
     1921 acagataagc ccggagcgcg ccacgccgtc cacggccaag cgcttttcaa accgcgtccg
     1981 cttggtggcg gaaccgatca gcccgcaata gcggaagtcg ccccgcgcca gcaccgcccg
     2041 gcacagttga tagtcgaggt catggctgtg ggtgaagatc agggcgaaac tgccgggcgg
     2101 cgccgtgcgc accgcaccca gcagatcgcc ggtgacggtg gcgccggtgc cggcgaaatc
     2161 ggggcgcagg tcgagccatg tcagatcgaa gggcaaggtc cgcatgatgg gggccagcgc
     2221 ctgaccgaca tgtccagccc cgaacatcag cagacgcggc tgcggacgaa catgttcgat
     2281 gagtgtaaaa ccttcgccga tgcgagtggc aatcacttcg ccaggtggcg cgcgcaccaa
     2341 aagcggcacg tccgccacca ccgcatcgca aggggagatc tcgcgcgcga tgccgccggc
     2401 ccccagccgc gataccaccg tataaggctt gccggtgcgt tccgccgcgg cgatgacgcc
     2461 aagccatccg gcgctttcgg gacccaggcg ttccagcaaa atgcccaccc ggccgccgca
     2521 gcattggccc agcagcggcc ccagagggta atgttggatg cgccagggga catcgccggc
     2581 cagcatccgg cgagcctggt ccacgatggt gaattccagc ttgccgccgc ccaccgtgcc
     2641 gtcctgggca tcatcccaca ccagcatttt cgcaccggcc tcgcgcgggg cggagccttc
     2701 cacggcacag atcgttacca gcacgaccgg cttggcttcg gcgatacggg ccgcggcgag
     2761 ggaccaccag ctgctcataa gacaggccgc agcttttcca ccgccagaag aatccgttcc
     2821 ggtgtggcgg gggcatcgag atcgggcagg gttttacgat caccgacact ggccaccgcg
     2881 tcggtcaggg ccgaaaagac cgatagcgcc agcatcagcg gcggctcgcc caccgccttg
     2941 gagcggtgaa ccgtctcctc gcggttctcg cccttccaca attccatgtt gaaaatgggc
     3001 ggccggtcgc tggcggtggg aatcttgtag gtcgaaggcg catgggtgcg caggttgccg
     3061 gccgcgtcga accacaattc ctcgctggtc aaccagccca tgccttgcac gaaaccgcct
     3121 tcgatctggc ccagatccag cgccgggttg atcgagcggc cgacatcgtg aatgaggtcc
     3181 acccgcagca cccggttttc gccggtcaaa gtgtcgatcg ccacctccga taccgccgcg
     3241 ccataggcat aatagtaaaa gggacggccg cgatgctccg cgcggctgta atgaatcttg
     3301 ggcgtcttgt agaagccggt ggaggacagc gagatgcgcg ccagatgcgc cgcccgtgcc
     3361 agctccgcga aactgaggct ggcggcgccg ccatgaacgc gcccatcgcg gaagacgatg
     3421 ctttcgggag cgcaggaaaa acgctccgcc gccaagcccg tcagccgt
//
LOCUS       DATMDK010000085         2530 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1872563,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000085 DATMDK010000000
VERSION     DATMDK010000085.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2530)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2530)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2530
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1872563"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..424)
                     /locus_tag="VNN98_01705"
     CDS             complement(<1..424)
                     /locus_tag="VNN98_01705"
                     /EC_number="2.7.1.71"
                     /inference="COORDINATES: protein motif:HMM:NF010552.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate kinase"
                     /protein_id="HWM60831.1"
                     /translation="MTLTKTVALVGMMGAGKTSIGKRLAARLDVPFADADQEIEAAAG
                     MTVAEIFEKYGEPEFRRLERSVIARLLGEGPRVLATGGGATMDETTRAAMTTAAFTIW
                     LKAPVEILLGRVRKRQGADQTRPLLANDDTRGTLERLLA"
     gene            460..1398
                     /locus_tag="VNN98_01710"
     CDS             460..1398
                     /locus_tag="VNN98_01710"
                     /inference="COORDINATES: protein motif:HMM:NF001399.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0009037 - tyrosine-based site-specific
                     recombinase activity [Evidence IEA];
                     GO_process: GO:0006313 - DNA transposition [Evidence IEA];
                     GO_process: GO:0007049 - cell cycle [Evidence IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific tyrosine recombinase XerD"
                     /protein_id="HWM60832.1"
                     /translation="MTRPNSAHLIETFLDMMSAERGAGANTLAAYRRDLMNFAGYLSS
                     KGADPGKAGREQVRAFLTGLSSSGMAASTQARKLSTLRQFYGFLYVEGIRTDDPTQTI
                     AAPQARRSLPKILSGDDLEAMLQAAALDQTPEGLRLTLIVEMLYGGGLRVSELAGLTL
                     AAVRSKEAFLRITGKGNKERLSPLSPAARIALDAYLAVREEFVPSRDKNNRYLFASRG
                     VEGFLTRRRFHQLLKGLALKAGIDPTKVSPHVLRHAFATHLVEGGADLRSVQTLLGHA
                     DIATTQIYTHVARDHLTKVVRAAHPLAKPKTVKNAR"
     gene            1481..2431
                     /locus_tag="VNN98_01715"
     CDS             1481..2431
                     /locus_tag="VNN98_01715"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020045072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009317 - acetyl-CoA carboxylase complex
                     [Evidence IEA];
                     GO_function: GO:0003989 - acetyl-CoA carboxylase activity
                     [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase carboxyltransferase
                     subunit alpha"
                     /protein_id="HWM60833.1"
                     /translation="MHYLEFERPIAELEGKIVELRKLAEEDPSMDINGEVERLQSRAG
                     TLVADTYARLTSWQKVQVARHPGRPHFLDYANRILEDFTPLAGDRNFGEDQAVIAGLA
                     RFRGRPIAFIGQEKGNDTESRIRHNFGSAMPEGYRKAVRIFELANRFGLPVLSFCDTS
                     GAYPGVSAEERGQAEAIARSISAGLSVKAPFIATIIGEGMSGGAIAIAAASRVYMLEH
                     AIYSVISPEGCASILWRSADKAQEAATALKITAQDLLQLKVIDAIVPEPVGGAHRAPL
                     DTIDAVADQIAAGLKEMDGISGEELLRQRRAKFLGMGRNL"
BASE COUNT          452 a          841 c          785 g          452 t
ORIGIN      
        1 ccgccagcaa gcgttccagg gtaccccgtg tgtcgtcatt ggccagcagg ggccgtgtct
       61 ggtcggcacc ctggcgcttg cgcacccgtc ccagcaggat ttcaaccggc gccttcagcc
      121 agatggtgaa ggcggccgtc gtcatcgcgg cgcgggtggt ctcatccata gtggcgccgc
      181 cgccggtggc cagcacgcgc ggtccctcgc ccaagaggcg ggcgatgacg ctgcgttcca
      241 ggcggcggaa ttccggctcg ccgtattttt cgaaaatctc cgccaccgtc atgcccgcag
      301 cggcttcgat ctcctgatcg gcatcggcga agggcacgtc caggcgcgcg gccaggcgct
      361 tgccgataga ggttttgccc gcccccatca tgcccaccag cgccacggtc ttggtcaagg
      421 tcatgggcct tccgatacag ggatgataaa ccagtgtcca tgactcgtcc caacagtgcc
      481 cacttgatcg aaacctttct cgacatgatg agcgccgagc gcggcgcggg cgccaacacc
      541 ctggccgcct atcgccgcga cctgatgaat tttgccgggt atttaagttc gaagggggct
      601 gaccccggca aggccggccg cgagcaagtg cgggccttcc tcaccggctt gtcgtcatcc
      661 ggcatggcgg cctccaccca agcgcgcaaa ctgtcgacac tgcgccagtt ctacggcttt
      721 ctgtacgtcg agggcattcg cactgacgat cccacccaga ccatcgccgc accgcaggcc
      781 cgccggtcgc tgcccaagat actgtcgggc gacgatctgg aggcgatgct gcaagcggcg
      841 gcactggacc aaacgccgga gggcctgcgg ctgaccctga ttgtcgagat gctctatggc
      901 gggggcttgc gcgtctccga actggcaggg ctgacattgg cggcggtgcg cagcaaagaa
      961 gctttcctgc gcattaccgg caagggcaac aaggagcggc tctcgccgct cagtcctgcc
     1021 gcacgcatcg cgctggacgc ctatctggcg gtgcgcgagg aattcgtgcc cagccgcgac
     1081 aaaaacaatc gctatctctt cgcctcgcgc ggggtggaag gctttctcac aaggcggcgc
     1141 ttccaccagc ttttgaaagg gctggcgctc aaggcgggga tcgatcccac caaagtttcg
     1201 ccgcatgtac tgcgccatgc tttcgcaact cacctggtgg aaggcggcgc cgatttgcgc
     1261 agcgtccaga ccctgctggg ccatgccgat atcgccacca cccagatcta cacccatgtc
     1321 gcgcgggacc atttgaccaa ggtggtgcgg gccgctcacc cgctggccaa acccaagact
     1381 gtgaagaacg cccgttaaca cactggaaca gaaaggttct ttagccattt cctttcgtga
     1441 gtgcctgtgc cattttccgc ccccaacggt gatttgagcc atgcattatc tggaattcga
     1501 gcgtcccatc gcggaactgg agggcaagat cgtcgagctg cggaagcttg ccgaggaaga
     1561 ccccagcatg gacatcaacg gcgaggtgga acggctgcag agccgcgccg gaaccctggt
     1621 ggccgatacc tatgcccggc tgacctcctg gcagaaggtg caggtagccc gtcatccggg
     1681 gcggccgcat ttcctcgatt acgccaatcg catcctggaa gacttcacgc ccctggccgg
     1741 ggatcgcaac ttcggcgaag accaggcagt gatcgccggg ctggcgcggt ttcgcggccg
     1801 tcccatcgcc ttcatcggcc aggaaaaagg caacgacacc gaaagccgca tccggcacaa
     1861 tttcggctcc gccatgcccg aaggttatcg caaggcggtg cgtattttcg aattggcgaa
     1921 ccggttcggc ctgccggtgc tgtccttctg cgatacgtcg ggcgcctatc ccggcgtcag
     1981 cgccgaggaa cgcggccagg cggaagccat cgcccgctcc atttcggcgg gcctgtcggt
     2041 caaggcgccc ttcatcgcca ccatcatcgg cgaaggcatg tcgggcggcg ccatcgccat
     2101 cgccgccgcc tcccgcgtct atatgctgga acatgcgatc tattcggtga tctcgcctga
     2161 gggctgcgcc tccatcctgt ggcgcagcgc cgacaaggcg caggaggctg ccacggcgct
     2221 gaagatcacc gcccaggacc tgctgcagct caaagtaatc gacgccatcg tgccggagcc
     2281 ggtgggcggc gcccatcgcg cgcccttgga cacgatcgac gccgtggccg accagatcgc
     2341 cgcgggcctg aaggaaatgg acggtatttc cggcgaggaa ttgctgcgcc agcgccgggc
     2401 caagttcctg ggcatgggcc gcaatctctg aggcattgtg cgcaaggtct ttcgcgcgtc
     2461 ataatttccg ggcacttgta cgcagccagc cctgtcacca cttgacgggg ggcaagttca
     2521 cagcagtgcg
//
LOCUS       DATMDK010000086         3024 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_955551,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000086 DATMDK010000000
VERSION     DATMDK010000086.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3024)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3024)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3024
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_955551"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..392)
                     /locus_tag="VNN98_01720"
     CDS             complement(<1..392)
                     /locus_tag="VNN98_01720"
                     /EC_number="3.1.11.6"
                     /inference="COORDINATES: protein motif:HMM:NF025118.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII large subunit"
                     /protein_id="HWM60834.1"
                     /translation="MSETASSANLANLPEFSVTELSAALKRAVEDQFAMVRVRGEISG
                     LKFHSSGHVYFDLKDDKAVLNAVIWRGVAGRLRVRPEAGMEVICTGKLSTYAGSSRYQ
                     LIVEQVELAGLGALMALLEERRKKLAAEG"
     gene            409..1698
                     /gene="purD"
                     /locus_tag="VNN98_01725"
     CDS             409..1698
                     /gene="purD"
                     /locus_tag="VNN98_01725"
                     /EC_number="6.3.4.13"
                     /inference="COORDINATES: protein motif:HMM:TIGR00877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004637 - phosphoribosylamine-glycine
                     ligase activity [Evidence IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylamine--glycine ligase"
                     /protein_id="HWM60835.1"
                     /translation="MTAKNGEADVRVLLVGSGGREHALAWALAQSPLLTKLYCAPGNA
                     GIAQVAECVPIPATNFAALAKFAVEARINFAMIAADAQLVGGLWDVLEAAGIRSLGPS
                     KAAAVLEGSKGFVKDLCTEAGIPTAAYRRFTAPDAAKVFADTLGYPVVIKADGLAAGK
                     GVIIAADKAESDKAIDFMFEGGFGDSGHAIVIEEYMEGEEASFFALSDGTHVIPLAGA
                     QDHKRVGDGDTGPNTGGMGAYSPAPVLPPSLEQMAMDRFIKPTVAAMAAKGMPYMGVL
                     YLGLMITKQGPKLVEYNARFGDPECQVLMPRLKIDLLATLLAARAGTLQPLEWREEAA
                     LTVVMASKFYPGAYEKGHVITGLEAAAKLPGVIIFHAGTARRGSDIVAIGGRVLDVTA
                     VGATIAEAQARAYAAVELIHWEGAFCRRDIGWRALKR"
     gene            1791..2411
                     /locus_tag="VNN98_01730"
     CDS             1791..2411
                     /locus_tag="VNN98_01730"
                     /inference="COORDINATES: protein motif:HMM:NF013718.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatase PAP2 family protein"
                     /protein_id="HWM60836.1"
                     /translation="MLLWAGFLSILAGIAALTIDRALAHFIYDHVSAKVHKALDGVTH
                     YAKAGHWLAAAFLALAVAAGMRHFGVLADDATQLIGYSLAFIASLTLGSGVLHVIKLV
                     LGRRRPRDDMEMGLYGFMPLAFNPAYNSFPSGHALTICCVAVIFTCVWPLWWPVWFAV
                     AALLAVTRALLTAHFLSDVLIGAGIGLIAAREVLQLGFPGLSQPWF"
BASE COUNT          531 a          967 c          967 g          559 t
ORIGIN      
        1 ccttcggcgg ccagcttctt gcgtcgctct tccagcaggg ccatcagcgc gcccaacccg
       61 gccagttcca cctgctcgac aatcagctga tagcgcgagc tgccggcata ggtggacagc
      121 ttgccggtgc agatcacttc catgccggct tccgggcgga cccgcagccg tcccgccacg
      181 ccgcgccaga tcaccgcatt cagcaccgcc ttgtcgtcct tgagatcgaa atagacatgg
      241 ccggaggaat ggaatttcaa cccggaaatc tcgccccgca cccgcaccat ggcgaactgg
      301 tcctccaccg cgcgcttgag ggcggcggac agttcggtga ccgagaattc gggcaggttg
      361 gccaagttgg cggaagaggc tgtttcgctc atggggctat gatacagggt gacggcgaaa
      421 aatggcgagg ctgacgtgag ggtgttgttg gtaggttccg ggggccgcga acatgcgctg
      481 gcctgggcgc ttgcgcaaag cccgctgctg acaaagctgt actgcgcccc cggcaatgcc
      541 ggaatcgcgc aggtggcgga atgcgtgccg attcccgcca ccaactttgc cgccctggcg
      601 aaattcgccg tcgaggcccg aatcaacttc gccatgatcg ccgccgacgc ccagctggtg
      661 ggcggactgt gggacgtgct ggaagccgcg ggcatccgca gtctggggcc gtccaaggcc
      721 gccgcggtgc tggaaggttc caagggtttt gtcaaagacc tttgcaccga ggcgggcatt
      781 cccaccgccg cctatcgccg cttcaccgcg ccggatgcgg caaaagtctt cgccgacact
      841 ctgggatatc ccgtggtgat caaggccgat ggcctcgccg ccggcaaggg cgtgattatt
      901 gccgccgata aagccgaaag cgacaaggcg atagacttca tgttcgaagg cggcttcggt
      961 gacagcggcc acgccattgt tatcgaggaa tatatggaag gcgaggaagc cagcttcttt
     1021 gctttgtctg atggcaccca tgtgatcccg ctggcaggcg cgcaggatca caagcgcgtg
     1081 ggcgatggcg acaccggtcc caacaccggc ggcatgggcg cctattcgcc cgcgccggtc
     1141 ttgccgccgt ccctggaaca gatggcgatg gaccggttca tcaagcccac ggtcgccgcc
     1201 atggcggcca aaggcatgcc ctatatgggc gtgctctatc tggggctgat gatcaccaaa
     1261 cagggtccca agctggtgga atacaatgca cgcttcggcg atccggaatg ccaggtgctg
     1321 atgccgcggc tgaaaatcga tctgctcgcc accctgctgg cggcacgggc cggcaccttg
     1381 cagccattgg aatggcgcga ggaagcggca ctgacggtgg tgatggcgtc caagttctat
     1441 cccggcgcct acgagaaagg ccatgtcatc accgggcttg aagcggccgc caaattgccc
     1501 ggcgtcatta ttttccacgc cggcaccgcg cggcgcggca gcgacatcgt tgccatcggc
     1561 ggacgggtgc tggacgtcac ggcggtgggc gcaaccatcg cagaggccca ggcccgcgcc
     1621 tatgccgccg tggaactgat ccactgggaa ggcgccttct gccgccgcga cattgggtgg
     1681 cgcgcgctaa agcgctgaaa aagcgcttta gcgctgccta tgcgcgcttc cgcgtgcgcg
     1741 gcgcgcactg aatcgttgac agacgcgccc cgacaaggca cccactcctt atgcttctgt
     1801 gggcaggttt cctttccatc ctggccggta tcgcggcact gacgatagac cgcgccctgg
     1861 cgcacttcat ctacgatcat gtcagcgcca aggttcacaa ggcgctggac ggcgtcaccc
     1921 attacgccaa ggcgggtcac tggctggcgg cggcgttcct ggcgctggcg gtggcggccg
     1981 gcatgcgcca cttcggtgta ctggcggacg acgcaaccca gctgatcggc tacagcctgg
     2041 ccttcatcgc cagcctgacc ttgggcagcg gcgtgctgca tgtgatcaaa ttggtgctgg
     2101 gccgccgccg gccgcgcgac gatatggaga tgggcctgta cggcttcatg ccgctggctt
     2161 tcaatcccgc ttacaattct ttccccagcg gccatgccct gaccatctgc tgcgtggcgg
     2221 tgatcttcac gtgcgtctgg ccgctctggt ggccggtctg gttcgccgtc gccgccttgc
     2281 tggcggtgac ccgtgccctg ctgacagcgc atttcctcag cgatgtgctg atcggcgcgg
     2341 gcatcggcct gatcgcggcg cgcgaagtgc tgcagctggg cttccccggc ctttcgcagc
     2401 cttggtttta gcattcttcc ctctcccctt gagggagagg acgcaaaatc ttgcacttag
     2461 cggagcgcat gcggagctaa gtgcttagat tttgctaggt gagggggtga gttgcggcgc
     2521 gcgaagcgcg tgagcgggtc cagtggatcc gcgaaagcaa cgaacgcccg gagcgtagcg
     2581 aagggccgga ggcggggcgg aaagaccggc cgctcgcttt ggctcgcggc gttcgtcgct
     2641 cgaaatggtc caccggacca tttcgtttgc tccgcaaaac gctccttacc ccctcacctg
     2701 aaaaatcaat gggttgagcg ccgctgcgcg ccgctaaccc aatgattttt cttcctccac
     2761 tgggcgcgct tggccgcgca cccgtccttc ggacccctca aggggagagg gaaaacgaaa
     2821 acaaaggcgt tcctcgaaat tccaccccgt cgggttaccc aaggcagtcc taaactctac
     2881 gcgcccgaaa gaagtcccgc aaaatctcgc ccgcttcggc cgcatgcggc tcggtctgag
     2941 tcactgaagg gcggtgatgg caggtgggct gctcgaaaaa acgcggccca tgcagcaccg
     3001 ctccgccctt gggatcgcaa gccg
//
LOCUS       DATMDK010000087         5123 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1188646,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000087 DATMDK010000000
VERSION     DATMDK010000087.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 5123)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5123)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5123
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1188646"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..242
                     /locus_tag="VNN98_01735"
     CDS             <1..242
                     /locus_tag="VNN98_01735"
                     /inference="COORDINATES: protein motif:HMM:NF013584.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="amidase family protein"
                     /protein_id="HWM60837.1"
                     /translation="VGAKTADPVEMYLQDVFTVTVNLAGLPGISVPAGLTESGLPLGL
                     QLIGKAFDEATLLRAAQAIETAADFKHSPAKWWSV"
     gene            263..1759
                     /gene="gatB"
                     /locus_tag="VNN98_01740"
     CDS             263..1759
                     /gene="gatB"
                     /locus_tag="VNN98_01740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005247018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016884 - carbon-nitrogen ligase activity,
                     with glutamine as amido-N-donor [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatB"
                     /protein_id="HWM60838.1"
                     /translation="MKNKLLKGESGEWEIVIGMEVHAQVLSNSKLFSGASTEFGSEPN
                     SNVSFIDAGFPGMLPVINEKCIEQAVRTGLGLRAKINLRSIFDRKNYFFPDLPQGYQI
                     SQYKDPIVGEGEVLIDLKDGESIKVGIERLHLEQDAGKSLHDQHPDNSFVDLNRSGIA
                     LMEIVTKPHMRTSEEAAAFLKKLRAIVRYLGTCDGNMDEGSMRADVNVSVCRVGGYDK
                     FRADGSFKHLGTRCEIKNVNSMRFIAQAVEYEARRQIEVIEGGGTIAQETRRYDSKLG
                     ETRSMRSKEEAHDYRYFPDPDLLPLELDAAWVEAIKKTLPELPDEKKARFMAAGLSAY
                     DASVLVTERELADYFEELAKGVDAKAAANWLNNEILGRLNRDGLSITDVPVSAAANNA
                     IIAMITDKTISGKIAKDLLDIVWTEGGDPHAVVEARGMKQVTDTGAIDAAIEAVIAAN
                     PDKVEEVKAKPKLAAWFVGQVMKQTGGKANPAAVNAALKTRLNLPDEG"
     gene            2295..3005
                     /locus_tag="VNN98_01745"
     CDS             2295..3005
                     /locus_tag="VNN98_01745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017405991.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0006749 - glutathione metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase N-terminal
                     domain-containing protein"
                     /protein_id="HWM60839.1"
                     /translation="MKRAKARVRRPKPIALYYWSTPNGHKISIMLEELGVPYEVHPID
                     IGKGAQFVPAFLKISPNNRIPAIVDPGGPGGRPISVFESGAILQYLGRKYGRFYPSDE
                     RGRVAVEEWLFWQMGGLGPMAGQANHFLNYAPEDLPYAKKRYRDEVHRLLGVMNTRLA
                     TRKFLAGAYSIADMACWSWVLSASKYTPLDEFPHLAAWKDRVGARAAVRRGKAAAAEL
                     RKPLNDEDRKNLFGQRAR"
     gene            3311..3583
                     /locus_tag="VNN98_01750"
     CDS             3311..3583
                     /locus_tag="VNN98_01750"
                     /inference="COORDINATES: protein motif:HMM:NF019843.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM60840.1"
                     /translation="MACIDIDSLAQYERDAKEGRADALYNLGLAYSTGQGVGVDMVAA
                     HKWFNLAAVRGVEAAKSWRNQLAAEMSTGQIAEAQRLAREWLNIFK"
     gene            complement(3771..>5123)
                     /locus_tag="VNN98_01755"
     CDS             complement(3771..>5123)
                     /locus_tag="VNN98_01755"
                     /inference="COORDINATES: protein motif:HMM:NF013618.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lytic transglycosylase domain-containing
                     protein"
                     /protein_id="HWM60841.1"
                     /translation="YSYGLPKAQAVVEKLHDSSDPGLLFDWSHALRMAERDREAHAML
                     LRAPAAPLVKDHAARWWAEVSIQARDALAATDPRTALSLAQHAGFMSGDQYAEQQFLA
                     GFIALRFLKESSTALAAFQRLEAGVSRPISKSRAQYWQGRSYEALGDTAGALTHYRLA
                     AAYPETFYGQIALAHIDATPTLHLSDTAVEAATAAELDSDPLMPEIKVLADLGQAGSL
                     RVFVDRDVEVYSSPRHLKRLMLMLSDWGYPEIALRLAKTASYAGAPMPALTHPVIPLP
                     SYPGPGAAPDPAMVLGLIRQETEFDATAVSGAGARGLMQMMPASARLAAKQAGLAYRP
                     EALMTDTAYNMQLGMTEYRVHLDRYGSSNVLALASYNAGPSNVKKWLAANGDPRVTDP
                     LDWIEQIPFGETRNYVQRVLENTEVYRARLAGKDVPLKILQDLYAPGQPSMPVLAAKN
                     "
BASE COUNT         1049 a         1567 c         1580 g          927 t
ORIGIN      
        1 gggttggtgc caagacagcc gatccggtcg agatgtatct tcaggacgtc ttcaccgtca
       61 cggtcaatct tgcgggactg ccgggcatct cggtgccggc cggcctgacc gaaagcggcc
      121 tgccgctggg cctgcagctg atcggcaagg cttttgacga agccaccctg ctgcgcgctg
      181 cccaggcgat tgagacggca gcggatttca agcatagccc ggccaaatgg tggtccgtat
      241 gagcgcacca aaagaaacat ccgtgaaaaa caagcttttg aagggtgaaa gtggcgagtg
      301 ggaaatcgtc atcggcatgg aagtccatgc ccaggtcctt tccaattcca agctgttttc
      361 cggcgcctcg accgaattcg gcagcgagcc caacagcaat gtgtcgttta ttgacgcggg
      421 tttccccggc atgctgccgg tcatcaacga aaaatgcatc gaacaggcgg tgcgcacggg
      481 cctgggcctc agggccaaga tcaatcttcg cagcattttc gaccgcaaga actacttctt
      541 tcccgacctg ccccagggct accagatcag ccagtacaag gaccccatcg tgggcgaggg
      601 cgaggtgctg atcgacctga aggacgggga atccatcaag gtcggcatcg aacggctgca
      661 tctggagcag gacgctggca aaagcctgca tgaccagcat cccgacaaca gtttcgttga
      721 cctgaaccgt tcgggcatcg ccctgatgga aatcgtcacc aagccgcaca tgcgcacatc
      781 cgaggaagcc gcggctttcc tgaaaaaatt gcgggccatc gtgcgctatc tgggcacctg
      841 cgacggcaac atggacgagg gttccatgcg ggccgacgtc aatgtctcgg tctgccgggt
      901 gggcggctat gacaagttcc gtgccgatgg cagcttcaag catctgggca cgcgctgtga
      961 gatcaagaac gttaattcca tgcgcttcat cgcccaggcg gtggagtatg aagcccgccg
     1021 ccagatcgag gtgatcgaag gcggcggcac tatcgcccag gaaacccggc ggtatgacag
     1081 caagctgggc gagacccgct ccatgcgctc caaggaagag gcgcacgact atcgctactt
     1141 ccccgatccc gacctcttgc cgctggaact ggacgccgcc tgggtcgaag ccatcaaaaa
     1201 aaccttgccg gaactgccgg acgagaagaa ggcgcggttc atggcggcgg gcctgtcggc
     1261 ctatgacgca tcggttctgg tcaccgagcg cgaactggcc gactatttcg aggagttggc
     1321 caagggtgtg gacgccaagg cggccgccaa ctggctgaac aatgagatac ttggccgtct
     1381 caatcgtgac gggctgtcaa tcaccgacgt gccggtgagt gcagccgcga acaacgccat
     1441 catcgcgatg attacggaca agaccatctc cggcaagatc gccaaggacc tcttggacat
     1501 cgtttggacc gaaggcggcg acccgcacgc cgtggtggag gcgcgcggca tgaagcaggt
     1561 gaccgacacc ggcgccatcg atgcggccat cgaagcggtg atcgccgcca accccgacaa
     1621 ggtggaagag gtgaaggcca agcccaagct cgccgcctgg ttcgtcggtc aggtgatgaa
     1681 gcagacgggg ggcaaggcca atcctgccgc cgtgaatgca gccctcaaga cccgactcaa
     1741 tttgcccgac gaggggtgat tcgcacaaaa tgcgcaattc gcgaaccagc cccgcatttt
     1801 tcgcaaattt tattccgtac acggaatagc aattttaacc cttgtgaaat ggggtttttc
     1861 tgcatttcgc gattttgggt gtttttcaaa acaccggcga cagttgcatt tcaaaatgca
     1921 agtaattcat attgatgacg ttttgggggg cgacgatgtc gttcagaccc gaacaaacga
     1981 tagaggagtt gaacatggct gcgaagaaaa aggccaagaa ggccaccaag aagaaggcga
     2041 ccaagaagaa ggccgccaag aagaagaagt aattgacctc ggtcagttag ttcttcacgg
     2101 ctacccctga acattcactc aggacgtatc cgatgaataa ggcaaaggcc gcggctccta
     2161 ggcaaatcgc caaaggtgcc gcggccaagc ttttttagta atgctgtaag ccttgccgat
     2221 ataccggcta ttccccatct gttccctggt gcagcggaga gagggatatg gcgaagaaat
     2281 ccacaaagaa gactgtgaaa agggccaagg ctcgggtccg taggcccaag cctatcgcgc
     2341 tttactattg gtccacgccc aacggccata agatcagcat catgctggaa gagcttgggg
     2401 tgccctatga ggttcacccc atagacatcg gcaagggcgc gcagttcgtc cccgctttcc
     2461 tgaaaatctc ccccaacaac cgcatcccgg ccattgtcga tccaggcggc cccggcggcc
     2521 gccccatctc ggtcttcgaa tccggcgcca tccttcaata tctcggccgc aaatacggcc
     2581 gcttctatcc ttcggacgag cgcggccggg tggcggtgga ggagtggctg ttctggcaga
     2641 tggggggcct ggggcccatg gcgggccagg ccaatcactt tctcaactat gcgcccgagg
     2701 acttgcccta tgccaaaaag cgctaccgcg acgaggtcca tcgcctgttg ggggtgatga
     2761 acacccggct ggccacgcgc aagttcctgg cgggcgccta ttccatcgcc gacatggcct
     2821 gctggagctg ggtactgtca gcgtcgaaat acaccccgct ggacgaattc ccgcacctgg
     2881 cggcctggaa ggaccgggta ggggccaggg ctgcggtccg gcgcggcaag gcggcagcgg
     2941 ccgagctgcg caagccgctc aacgatgagg atcgcaagaa cctgttcggg caaagagccc
     3001 gctaaagcag gtcttttttg ttgccccctc cggtccggcc ttcgcgcctg acggcgctcg
     3061 gcgttcggtt ggcttggccg ccaatctcac ccttcgcatc gcaagcgctg ctacggccac
     3121 ctcccccgct aacgtgctga cgcacgcggg ggaggcggac tcgctgatct tcagactttg
     3181 ttttctctcc ctaacgtttc ttagcaatta gcactaacgc gcatttaccg cgtcttagct
     3241 tctctcgccg caccatcccg gtcgcgcgaa aggcctcatg ccactcgcgc gagacgagag
     3301 ggactaggtc gtggcctgca tcgacataga ttcactggcg caatatgagc gcgacgccaa
     3361 ggaagggcgc gcggatgcgc tctacaatct cggcttggcc tattccaccg gccagggcgt
     3421 gggcgtggac atggtcgcgg cccacaaatg gttcaacctt gccgccgtgc gcggcgtgga
     3481 agccgccaag agctggcgca accagctggc ggccgaaatg agcaccggcc agatcgccga
     3541 agcgcagagg ctggcgcgcg aatggctgaa tattttcaag tgatgtcatg gcccgccacc
     3601 ccggtccgcg cgaagcgcgg ccggagcgta aactccgtgc gggccaccca gttgaagtct
     3661 gcgctggccg agaaataaaa gcgccgcaaa actatcgaaa atcagcttgt atcacctggg
     3721 tggcccgttt gtacgctgtc gctacaaacc ccgggccatg acaaggtggg ttagttcttc
     3781 gccgccaaca ccggcatgct gggttggcct ggcgcataaa ggtcctgcag tatcttgagc
     3841 ggaacgtcct tgcccgccag ccgcgcccgg tagacctcgg tattctccag cacacgctgt
     3901 acataatttc gggtttcccc gaagggaatc tgctcgatcc aatccagggg atcggtgacc
     3961 ctgggatcgc cattggccgc cagccacttt ttcacattgc tcggaccagc attgtaggac
     4021 gccagcgcca gcacgttgga gctgccgtaa cggtccagat ggacgcgata ttcggtcatg
     4081 cccagttgca tgttgtaggc cgtgtcggtc atcagcgcct caggccggta agccagaccc
     4141 gcctgcttgg ccgccagcct ggcgctggcc ggcatcatct gcatcagccc gcgcgcgccc
     4201 gcgcccgaca cggcagtggc atcgaactcg gtctcctgcc ggatcaggcc cagcaccatg
     4261 gcgggatcgg gcgccgcgcc cggccccgga taggacggca ggggaatgac gggatgggta
     4321 agggcgggca tgggcgcgcc ggcatagctt gcggtcttgg ccaggcgcag ggcgatctcg
     4381 ggatagcccc agtcactcag catcagcatc agccgcttca agtgccgggg cgaggaatag
     4441 acctcgacgt cgcggtcgac gaatacgcgc aaggatcccg cctggcccag gtcggccagc
     4501 accttgatct ccggcatcaa gggatcgctg tccagttcgg cagcggtggc cgcttccacc
     4561 gcggtgtcgc tgagatgcag ggtgggggtg gcatcgatat gagccagcgc gatctggccg
     4621 tagaaggttt ccggataagc cgccgccaac cggtaatgcg tcagtgcgcc ggcagtgtcg
     4681 cccagcgcct catagctgcg gccctgccag tattgcgcgc gggacttgct gatggggcgg
     4741 ctgacccccg cctccagtct ctggaaggcc gccagcgccg tgctggactc cttcaggaag
     4801 cgcagggcga tgaagcccgc caggaattgc tgctcggcat attggtcgcc tgacatgaag
     4861 ccggcatgtt gggccaggga cagcgcggtt cggggatcgg tggcggccag cgcatcgcgc
     4921 gcctggatgc tgacttccgc ccaccagcgc gccgcatggt ctttcaccag cggcgcggcg
     4981 ggcgcgcgca gcaacatagc atgcgcttcg cggtcgcgct ccgccatacg caaggcatgg
     5041 ctccagtcga acagcaggcc cggatcggaa ctgtcatgca gcttttccac caccgcctgc
     5101 gccttgggca ggccgtagga ata
//
LOCUS       DATMDK010000088         2009 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1188856,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000088 DATMDK010000000
VERSION     DATMDK010000088.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2009)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2009)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2009
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1188856"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..609)
                     /locus_tag="VNN98_01760"
     CDS             complement(<1..609)
                     /locus_tag="VNN98_01760"
                     /inference="COORDINATES: protein motif:HMM:NF036997.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM60842.1"
                     /translation="MRARLNPAPPPEIQQKPVVGVLLPLPLAGAYDYKLPPGSNAGRG
                     AVVAAPLGNREVLGVVWGAAEGTVGDNRLKVAEPLEGAPALPGKLCDFIDWVADYTLN
                     PPGSILAMALRSRGAFEPEARRIAYVRGSVTPPRMSAGRIRALEIAGDGLARSITGLA
                     EDANVSPAVVRGLVQAGALVPTELPEFAPFTQPDAGFAAPSLN"
     gene            667..1323
                     /gene="fsa"
                     /locus_tag="VNN98_01765"
     CDS             667..1323
                     /gene="fsa"
                     /locus_tag="VNN98_01765"
                     /inference="COORDINATES: protein motif:HMM:TIGR00875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016832 - aldehyde-lyase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fructose-6-phosphate aldolase"
                     /protein_id="HWM60843.1"
                     /translation="MKIFLDTADVAEIREYAASGLVDGVTTNPSLAAKTGRDYVESLK
                     EICAIVPGAVSAEVLATEFDGMMKEAAVFTKIAKNIAVKVPLTWDGLKACKALSDAGT
                     MVNVTLCFSPVQAMMAAKAGASFISPFIGRVDDIGEDGMGLIRDIRTIYDNYNFKTEI
                     LAASVRHVAHVREAALSGSDVATIPSSVFKALLSHPLTDKGLAAFMADAKKAGVVIKG
                     "
     gene            1323..>2009
                     /locus_tag="VNN98_01770"
     CDS             1323..>2009
                     /locus_tag="VNN98_01770"
                     /inference="COORDINATES: protein motif:HMM:NF012798.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0015074 - DNA integration [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HWM60844.1"
                     /translation="MADAAAGLRKHWLASLAHERRASPHTLRAYGDDVARFIGFQAGH
                     TGGALTEKVLAKLTPADIRAFITVRRGEGLGPGGVQRALAAVRSFYKFLAKEGILENA
                     AARSIRTPRVRRGLPRPLSVVDAERAITEAGEHKVEWMGARDAALLTLLYGAGLRISE
                     ALGLKRGDVPLGETLTVVGKGAKERSVPVLPLVAAALADYAAQIPFSGAPSSPLFLSR
                     RGKPMSAREAQ"
BASE COUNT          335 a          695 c          654 g          325 t
ORIGIN      
        1 attcagcgac ggcgcggcaa accccgcgtc cggctgcgtg aagggcgcga actccggcag
       61 ttcggtgggg accagcgcgc ccgcctgcac caagccgcgc accacggcag gcgaaacatt
      121 ggcgtcttcc gccagccccg tgatactgcg cgccaacccg tcgcctgcga tctccagcgc
      181 ccggatgcgg cccgccgaca tgcgcggcgg tgtcacactg ccacggacat aggcgatgcg
      241 ccgcgcttcc ggctcgaacg cgccgcgtga gcgcaacgcc atggccagga tcgagcccgg
      301 cgggttcagg gtgtaatccg ccacccaatc gatgaaatcg cacagtttgc ccggcagcgc
      361 cggcgcgcct tccagaggct ccgcaacttt cagccggttg tcgccgacgg tgccttcggc
      421 ggcgccccac accacgccca ggacctcccg gttccccaaa ggcgcggcaa ccaccgcccc
      481 ccggcccgcg ttagacccag gcggcagctt gtagtcatag gcgccggcca gtggcagcgg
      541 cagcagcacg ccgaccactg gtttttgctg tatttccggt ggcggtgcgg ggtttaagcg
      601 ggctctcatc ttgggctaca cttcgccccg cccaacccca aggtcaataa caaggtcatc
      661 gctcccatga aaatcttcct cgacaccgcc gacgtggcgg aaatccgcga atatgccgcc
      721 agcggcctgg tggacggcgt caccaccaat ccctcgctgg ccgccaagac cggtcgcgac
      781 tatgtcgaat cgctgaagga gatttgcgcc atcgtgccgg gcgcggtcag cgccgaagtg
      841 ctggccaccg agttcgacgg tatgatgaag gaagccgccg tcttcaccaa gatcgccaag
      901 aacatcgcgg tgaaggtgcc gctgacctgg gacgggctga aagcgtgcaa ggcgctgtcc
      961 gatgccggca ccatggtcaa tgtcacgctg tgcttctcgc cggtgcaggc gatgatggcg
     1021 gccaaggcgg gcgcgtcgtt catctcgccc ttcatcggcc gggtggacga tatcggcgaa
     1081 gacggcatgg ggctgatccg cgacatccgc accatctatg acaattacaa tttcaagacc
     1141 gagatcctgg cggcttcggt gcgccatgtc gcccatgtgc gcgaagccgc gctgtccggc
     1201 tccgatgtcg ccaccattcc gtcttcggtg ttcaaagcgc tgctcagcca tcccttgacc
     1261 gacaagggcc tggccgcctt catggccgac gccaagaagg ctggcgtggt catcaaaggc
     1321 tgatggcgga cgcggccgcc ggtctgcgca aacactggct ggcctcgctg gcgcatgaac
     1381 gccgcgcttc gccccacacc ttgcgcgcct atggcgatga cgtggcgcgc tttatcggct
     1441 ttcaggccgg tcataccggc ggcgcgctga ccgagaaggt gctggccaaa ctcacccccg
     1501 ccgacatccg cgccttcatc accgtgcgcc ggggcgaagg gctcgggccg ggcggggtgc
     1561 agcgggcgtt ggcagcggtg cgcagcttct acaaattcct ggccaaggaa ggcatcctgg
     1621 aaaatgccgc cgcccgttcc atccgcacgc cccgggtgcg gcgcggtttg ccgcggccgc
     1681 tgtcggtggt ggacgcagaa cgggccatta ccgaagccgg cgagcacaag gtcgaatgga
     1741 tgggcgcgcg cgacgctgct ttgctgacgc ttctctacgg cgcgggcctg cgcatttccg
     1801 aagccctggg gctgaagcgc ggcgatgttc ccctgggcga aaccctcacc gtggtcggca
     1861 agggcgccaa ggaacgcagc gtgccggtgt tgccgctggt cgccgccgca ctggccgatt
     1921 atgcggcgca aatccccttc agcggcgcgc cgtcatcgcc gctgtttctg tcgcggcgcg
     1981 gcaagccgat gagcgcgcgc gaggcgcaa
//
LOCUS       DATMDK010000089         5082 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_511747,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000089 DATMDK010000000
VERSION     DATMDK010000089.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 5082)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5082)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5082
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_511747"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(141..824)
                     /locus_tag="VNN98_01775"
     CDS             complement(141..824)
                     /locus_tag="VNN98_01775"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM60845.1"
                     /translation="MAAKRTPADPKRNVQDKGMVQRLKDQRSVFLKAQAVHENPRVLK
                     ERAFYPAHDKRLETPAYKQAHDHLTRTLDLPCLVCGVKNSTLKDKSQNRYGAKQMETH
                     HHVIEWALANAIDPAKFNKIILPHLKVRHPQNPLYAKAALTAQDVSDWVDHSEDNLWV
                     LCDVHHRAAYLGIHEITYPIWCPMDLLRDDFEDYVRQQIQEQKTTGKNTAGLTKAKPA
                     KKKSAKKKA"
     gene            complement(889..1386)
                     /locus_tag="VNN98_01780"
     CDS             complement(889..1386)
                     /locus_tag="VNN98_01780"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM60846.1"
                     /translation="MSIRRIAAAALLLAAAPAFATPALAQAPLRATPPDGFKFDSHET
                     IDKAVSIPEPGRLYGATFMNDHEDYYVEFVKRIDKGNMVETHAHWVDHITILSGEGVL
                     THGGTLTNAKESAPGEVRGGTLTGAGTQAVHAGDYFQIPAGMPHMLEAAPGKTLSYVV
                     FKARS"
     gene            complement(1408..1899)
                     /locus_tag="VNN98_01785"
     CDS             complement(1408..1899)
                     /locus_tag="VNN98_01785"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM60847.1"
                     /translation="MRSVLLAAALFAAMPAVATPALAQTPLRATSPDDFKFLSAQELD
                     QALMTPERGRVYSGHVINDHENYWVEFMKRMDHGNLVEFHAHWIDYITVLSGEGSVTY
                     GGALTGANPAGIGETRGGTLSGAAVQVIKPGDYIQIPAGVPHIINAAPGQELKFVLFK
                     HRV"
     gene            complement(1910..2383)
                     /locus_tag="VNN98_01790"
     CDS             complement(1910..2383)
                     /locus_tag="VNN98_01790"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM60848.1"
                     /translation="MMHALLLAAALAAAPPFTALDKTGAENAVRHLPGTELTQALKAA
                     KKPGDFYAQATLSKGERYQLINTIRDKDGQAEVHDGWNDHIFVQEGEASFVTGGVAVD
                     ANVTAPGEKRGTVIKGGATAAMHPGDYFFVPAGTPHQMLVAPGQHIKFIAFKTHK"
     gene            complement(2391..2885)
                     /locus_tag="VNN98_01795"
     CDS             complement(2391..2885)
                     /locus_tag="VNN98_01795"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM60849.1"
                     /translation="MTCNRILAAAALAALPFTASAQTPVPAPPPPHATQFEPFVYQPA
                     AEVEAMTHKSGGKTVSVITSDHETYFIEYVTRGINTAPEAHGHWYDYIQVLDGEGSIT
                     YGGTQEGAQDAGQQEMRGGKLVGGKLQILHPGDRLVVPPGLPHLFTATPGHSFTYLIF
                     KQRV"
     gene            complement(2997..3221)
                     /locus_tag="VNN98_01800"
     CDS             complement(2997..3221)
                     /locus_tag="VNN98_01800"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM60850.1"
                     /translation="MAKKSKLAVRAAELEAAVAGLFTGTPAPAKKKKKKKAKKAKVVK
                     AAKKPAKKAKKAKKATKKTAKKAKKKTKKR"
     gene            complement(3381..>5082)
                     /gene="rpsA"
                     /locus_tag="VNN98_01805"
     CDS             complement(3381..>5082)
                     /gene="rpsA"
                     /locus_tag="VNN98_01805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020044131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="30S ribosomal protein S1"
                     /protein_id="HWM60851.1"
                     /translation="AMLEQSFETQSPQEGQVIKGTIVAIENDFAMVDVGLKTEGRISL
                     KEFAMPGVPADIKVGDTVEVYLERVENALGEAVLSRDKARREESWVKLEKAFNDVTRV
                     TGVIFGRVKGGFTVDLDGAVAFLPGSQVDVRPMRDVGPLMNQPQLFQILKMDRRRGNI
                     VVSRRAVLEERRAEERTSLVASLQEKQIVEGVVKNITDYGAFVDLGGVDGLLHVTDIA
                     WRRVSHPTEVLQVGQTVTVQIIKINHETQRISLGMKQLQTDPWEGVAVKYPVGVQFKG
                     KVTNVTDYGAFVELEPGVEGLVHVSEMSWVKKNMAPSKLVTPGTDVDVAVLEVDSNKR
                     RISLGLKQTQENPWNAFTANHPAGTIIEGEIKSITEFGLFIGLDSDIDGMVHLSDLSW
                     SVPGEDAIKTYEKGQTVKAKVLDIDIEKERVSLGIKQLESDPIQKAGPMGGALRKGSV
                     VTGTVTEVNDGGIEVELEGGVKAFIRRADLARDRNDQRPERFGKGDKVDAQVTSVDKA
                     TRKVSLSIKAREVSEEKEAVAQFGSSDSGASLGDILGAALKKKTPKKKGSTETDEEDE
                     "
BASE COUNT          839 a         1544 c         1577 g         1122 t
ORIGIN      
        1 ttcggcttcg ccgccagcgc cgccatcctg ggcgagcccc tgcccttgtg gaaaatcggc
       61 gccacggcgc tgatcatagc ggggttggcg gtgaatttgc tgtggcgacc caaggctctg
      121 accgcgccgc agccctgacg tcaggctttc ttcttggcgg actttttctt cgccggcttg
      181 gccttggtca ggcccgccgt gttcttgccg gtggtcttct gttcctgaat ctgctggcgg
      241 acatagtctt caaaatcgtc gcgcagcaaa tccatcgggc accagatggg ataggtgatc
      301 tcatggatgc ccagataggc ggcgcggtga tgcacatcgc acagcaccca gagattgtct
      361 tcgctatggt ccacccagtc gctcacatcc tgggcggtca gcgcggcttt ggcataaagc
      421 gggttttgcg gatggcgcac cttcaggtgc ggcaggatga tcttgttgaa cttggccgga
      481 tcaatggcat tggccagcgc ccattcgatg acgtggtgat gggtttccat ctgcttggcg
      541 ccatagcggt tctggctctt gtccttcagg gtggagttct tcaccccgca caccaggcag
      601 ggcaagtcca aggtcctggt cagatggtca tgggcctgtt tgtaggcggg cgtttccagc
      661 cttttgtcat gagccgggta aaaggcccgt tctttcagga cacggggatt ttcatgaacc
      721 gcctgcgcct tgagaaagac tgagcgctgg tctttcaggc gttgcaccat gcccttatcc
      781 tggacattgc gcttcggatc ggccggagtt cgtttcgccg ccatgacgtt ctccaacagg
      841 gaacagcgaa actctccgct ttatttgtga cgattgctta tgcggtggtc atgaccgcgc
      901 cttgaacacc acatagctca gggttttgcc gggcgccgcc tccagcatgt gcggcatgcc
      961 cgccggaatc tggaaatagt caccggcatg caccgcctgg gtgccggccc cggtcagcgt
     1021 cccaccgcgc acttcaccgg gcgcgctttc tttggcattg gtcagggtgc cgccatgggt
     1081 caagacacct tcacccgaca ggatggtgat gtgatccacc cagtgggcat gggtttccac
     1141 catgttgcct ttgtcgatcc gcttcacgaa ttcgacatag taatcttcgt ggtcgttcat
     1201 gaaggtggcg ccatacagac gccccggctc cgggatggac accgccttgt cgattgtctc
     1261 atggctatcg aacttgaagc catcgggcgg tgtggcgcgc agcggggcct gggccaaagc
     1321 aggggttgcg aaagcgggcg cggcggccag cagcagcgcg gcggcggcga tacggcgaat
     1381 ggacatgggt aactcctgtt tgtttgatca gacccggtgc ttgaaaagca cgaacttcaa
     1441 ttcctgtccg ggggccgcat tgatgatgtg cggcacgcct gccggaatct ggatataatc
     1501 gcccggcttg atgacctgca ccgccgcgcc cgacagcgtg ccgccgcggg tctcaccgat
     1561 cccggcggga ttggcgccgg tcaaggcgcc gccataggtg acgctgccct cgcccgacag
     1621 gaccgtgatg taatcaatcc aatgggcatg gaattcgacc aaattgccat gatccatccg
     1681 cttcatgaac tcgacccaat agttctcatg gtcgttgatg acatggccgg aatagacccg
     1741 gccgcgttcc ggcgtcatca gcgcctggtc cagctcttgg gccgagagga atttgaaatc
     1801 atccggcgac gtggcgcgca gcggggtctg ggccaaagca ggggttgcga cggcgggcat
     1861 cgccgcaaac aaagcggcgg caagcaggac actgcgcata aagcgactcc tatttgtggg
     1921 ttttgaaagc aataaactta atgtgctggc ctggcgcgac cagcatctga tgcggtgtgc
     1981 cggcgggcac gaagaaataa tcgcccggat gcatggcggc ggtggcgccg cccttgatga
     2041 cggtgccgcg tttttccccg ggtgcggtga cgtttgcatc caccgccacc ccgccggtga
     2101 cgaagctggc ctcgccttcc tgcacgaaaa tatggtcgtt ccagccgtca tggacttcgg
     2161 cctgaccgtc cttgtcgcgg atggtgttga tcagctgata gcgctcgccc ttggacagag
     2221 tggcctgggc gtagaaatca cccggtttct tggccgcctt caacgcctga gtcagctcgg
     2281 tgcccggcag atggcggacg gcattttccg cgcccgtctt gtccagggcc gtgaagggtg
     2341 gtgcggcggc cagcgccgcc gccaacagga gtgcgtgcat catggggccc tcagactctc
     2401 tgcttgaaga tcagataggt gaaggagtgg cccggcgtcg ccgtaaaaag atgcggcagg
     2461 ccgggcggga ccaccagccg gtcaccggga tgcaggatct gaagcttgcc gcctaccagc
     2521 ttgccgccac gcatttcctg ctgtccggca tcctgggcgc cttcctgggt gccgccatag
     2581 gtgatgctgc cttcgccatc cagcacttgg atatagtcgt accaatggcc gtgcgcctcc
     2641 ggcgccgtgt tgataccgcg ggtgacatat tcgatgaaat aggtttcgtg gtcggaggtg
     2701 atgaccgaga ccgtcttgcc gccggacttg tgggtcatcg cttccacttc ggcggccggc
     2761 tggtagacaa agggctcgaa ctgggtggcg tgcggcggcg gcggtgcggg caccggagtc
     2821 tgggcggagg cggtgaaagg cagcgccgcc agcgcggccg cggccaaaat cctgttgcat
     2881 gtcatgcgcg ttcctcttgg ttattttgga ggaactttag cggcggcttg cacaaaagaa
     2941 aggggcgctt tttccgatgt ggaagcgccc ctttccatgt cgcagtgcgg tgaagtctag
     3001 cgcttcttgg tcttcttctt ggcctttttg gcggtctttt tcgtggcctt cttggctttc
     3061 ttagccttct tggcaggctt tttcgccgcc ttcaccacct tggccttctt ggccttcttc
     3121 tttttcttct tcttggccgg ggccggtgta cccgtgaaca ggcccgcaac cgcggcttcc
     3181 agttcagcgg cgcgaaccgc cagcttgctc ttcttcgcca taactcaact cctcatcaac
     3241 attgatgccc gcatgactag agtgattctg aagtggggca aaatgtccgg ctatttctac
     3301 gcgcgagcgc cagaccggtt cccccaaaca aaaagggcgc ggcctgcgcc gcgcccgatt
     3361 tgttcggaag gaagcgagga ttactcgtct tcttcgtccg tttccgtgct gcccttcttc
     3421 ttgggcgtct tcttcttcag ggccgcaccc aggatgtcgc ccaggctggc gccgctgtcg
     3481 gacgagccga actgcgccac ggcttccttc tcttccgaga cttcccgggc cttgatggag
     3541 agcgagactt tgcgcgtggc tttgtccacg ctggtgacct gcgcgtccac cttgtcgccc
     3601 ttgccgaagc gttccgggcg ctggtcgttg cggtcccgcg ccaggtcggc gcggcggatg
     3661 aaggccttca cgccgccttc cagttccact tcgataccgc cgtcattgac ttcggtgacc
     3721 gtgccggtga cgaccgagcc cttgcgcagc gcgccgccca tggggcccgc tttctggatc
     3781 ggatcgcttt ccagctgctt gatgccgagg gagacgcgct ccttctcgat atcgatgtcc
     3841 agcaccttgg ccttgacggt ctggcccttc tcataggtct tgatggcgtc ttcgcccggt
     3901 accgaccagg agagatcgga caggtgcacc atgccgtcaa tgtcggaatc cagaccgatg
     3961 aacaggccga attcggtgat cgacttgatc tcaccctcga tgatcgtgcc ggccggatgg
     4021 ttggcggtga aggcattcca gggattttcc tgggtctgct tcaggcccag gctgatgcgg
     4081 cgcttgttgg aatccacttc cagcaccgcc acgtccacgt ccgtgccggg ggtgaccagc
     4141 ttggaggggg ccatgttctt cttgacccag gacatttcgg agacatggac caggccttcg
     4201 acaccaggct ccagctccac aaaagcgccg taatcggtga cgttggtgac cttgcccttg
     4261 aactgcacgc ccacgggata tttgacggcg acgccttccc agggatcagt ctgcagctgc
     4321 ttcatgccca gcgaaatgcg ctgggtctcg tggttgatct tgatgatctg cacggtgacg
     4381 gtctggccca cctgcaacac ttcggtgggg tgggagacgc ggcgccaggc gatgtcggtg
     4441 acatgcagca agccgtccac gccgcccagg tccacaaagg cgccgtaatc ggtgatgttc
     4501 ttgaccacgc cttcgacgat ctgcttttcc tgcaagctgg cgaccagcga ggtgcgttcc
     4561 tcggcgcggc gctcttccag tacggcgcgg cgcgacacca cgatattgcc gcggcggcgg
     4621 tccattttca ggatctggaa cagttgcggc tggttcatca gcgggccgac atcgcgcatc
     4681 ggacgcacat cgacctgcga accgggcagg aaggccaccg cgccgtcgag atcgacggtg
     4741 aagccgccct tgacgcggcc gaagatcacg ccggtgacgc gggtgacatc gttgaaggcc
     4801 ttttccagct tgacccagct ttcctcgcgg cgggccttgt cgcgcgatag tacggcttca
     4861 ccgagcgcgt tctcgacgcg ctccaggtaa acttccaccg tgtcgcccac cttgatgtcg
     4921 gcggggacgc ccggcatggc gaattctttg agagagatgc ggccttcggt cttgaggccg
     4981 acatcgacca tggcgaagtc gttctcaatg gcaacgatgg tgcccttgat gacctggcct
     5041 tcctgcggcg actgggtttc gaaactctgc tccagcatgg cc
//
LOCUS       DATMDK010000090         5365 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1646727,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000090 DATMDK010000000
VERSION     DATMDK010000090.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 5365)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5365)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5365
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1646727"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..415)
                     /locus_tag="VNN98_01810"
     CDS             complement(<1..415)
                     /locus_tag="VNN98_01810"
                     /inference="COORDINATES: protein motif:HMM:NF013069.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HWM60852.1"
                     /translation="MGANISAPFIQRPVATSLLMIAILLVGLAGYKFLPLSALPEVDY
                     PTIQVQTFLPGGSPDVMTTSVTAPLEKQFGQMPGLKEMSSISSAGSSVITLQFDLSLS
                     LDIAEQEVQAAINASNSLLPNALLPAPPVYAKVNPA"
     gene            complement(457..1953)
                     /locus_tag="VNN98_01815"
     CDS             complement(457..1953)
                     /locus_tag="VNN98_01815"
                     /inference="COORDINATES: protein motif:HMM:TIGR01730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HWM60853.1"
                     /translation="MNIDRSPAAFQRAEPGASGPVGRAWSGVKGWSSRNPRLSRLVWF
                     ALGLALLALLIWAIYPAKTAGRRGLINQGAQSVGVARATSGDINVTLNALGTVTPLAT
                     ATVRPQVGGMLVKLNFTEGQMVKAGDTLAQIDPRPYQAALDQARGQLARDAATLANAK
                     VDLLRYQALMAQNATSQQTVATQAALVRSTEGVVVSDQANVESARINLGYTNIVSPVA
                     GRAGIHLVDIGNIVQASQAGGIVVVTQLQPMSVLFTIPEDSIGAVMDRMNGGATLAVD
                     AYDRSQTYKIASGTLSAVDTVVDPTTGSVKLRALFDNADNKLFAAQFVNVKLLVDTLH
                     NQTVVPVAAIQRGADGSFVFAVTPDKTVAQRNVKTGVQDGNNIQILSGIKAGDTVVVD
                     GADRLRDGADVEIPNLNAKIAAPSGGTSDAAGTALRARNAALLAKSCSEDIKKLCPSA
                     TPGREVRLCLIQNRDQLGADCSKAMAQMRRGAGGGGGPRGGGGGGGPQ"
     gene            2193..2735
                     /locus_tag="VNN98_01820"
     CDS             2193..2735
                     /locus_tag="VNN98_01820"
                     /inference="COORDINATES: protein motif:HMM:NF020893.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HWM60854.1"
                     /translation="MFLGIFHWFVHDARLWVKVTAQAHPYWAFPIAFLIAFTESFVGV
                     SFIVPGTFLLVTLGGVIGASHIGLFPAWLGAVLGSILGDWISWWIGFHYHHKIVHSWI
                     FRRFEEQIEKALHLFHNWGSWAIFIGRFMGPFRATVPLVAGMSELEFWPFMVANAASA
                     VVWAYVLLAPGAAILRHFFP"
     gene            2962..3639
                     /locus_tag="VNN98_01825"
     CDS             2962..3639
                     /locus_tag="VNN98_01825"
                     /inference="COORDINATES: protein motif:HMM:TIGR03025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003678 - DNA helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA];
                     GO_process: GO:0032508 - DNA duplex unwinding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exopolysaccharide biosynthesis polyprenyl
                     glycosylphosphotransferase"
                     /protein_id="HWM60855.1"
                     /translation="MSRQDTSETVMKAVFPAFDGFGLTIPHAPDSIAAKRMLDIALAG
                     LLAVLLSPMLALVSLAVALDSGGPVLFCQKRTGLNGKTFPIFKFRSMHVLEDGAEVVQ
                     ASKNDARVTRVGRVIRKLSLDELPQLVNVIAGDMSLVGPRPHAVAHDTHYGAALSNYA
                     VRQQVKPGITGWAQVNGARGATPTLDVMQQRINFDAWYVANANLALDLLILVRTPLEV
                     LRTRNAV"
     gene            3639..4472
                     /locus_tag="VNN98_01830"
     CDS             3639..4472
                     /locus_tag="VNN98_01830"
                     /inference="COORDINATES: protein motif:HMM:TIGR00696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="WecB/TagA/CpsF family glycosyltransferase"
                     /protein_id="HWM60856.1"
                     /translation="MRAALPAQYEVPSLPALEAANDSYSEVTVGGINTACLSRDGLAR
                     MMLQDCLDSRANDKRQPKLVFASNGHAIALAAQDEAFRFILEQADIIHADGQAAVFAS
                     RMTKTPIPERSATTDFIHDASQIAAEHGLRFFLLGATEEANAEAARVLAATYPGLQIV
                     GRRHGYFSRDEEDEICDEINLTLPDVIWVGLSVPLEYEFSVRNKTRLRAGWLVTCGGC
                     YNFVTGAYKRAPRWMQTIGLEWLFRLVLEPKRLFWRYAVTNPLAIFLLLTRTSSLQTA
                     Q"
     gene            4480..>5365
                     /locus_tag="VNN98_01835"
     CDS             4480..>5365
                     /locus_tag="VNN98_01835"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM60857.1"
                     /translation="MTVSDSVLPPGSRVPGKALSTALRYGLSAAGPVAVSAAHFLASL
                     LFLRNLPAHEFGLFSFVMVVVSFGMSLNASLITVPITRHLVTGEAEARPACFQMNWLV
                     CAGFAALLFAALLAGGAPLKEAVLLALFAAVFTFRWFARCFAYVDDRIGAAIQSDLVY
                     SLLLVGSLGALAMGHRVTFALGSEMLLLSALAALLPFGLKFFRTQLVSLRGNPKRYWP
                     IFRDLSRWSLMGVFLTEVTVNAHAYLVTFIAGPGAFALLALGMLLMRPASLMQSALPD
                     LERPAMARAIAAKDKPALS"
BASE COUNT          860 a         1762 c         1676 g         1067 t
ORIGIN      
        1 cggcgggatt gaccttggca tagaccggcg gcgccggcag cagcgcgttg ggcagcaggc
       61 tgttggaggc gttgatcgcc gcctgcactt cctgttcggc gatgtccagg ctgaggctga
      121 gatcaaattg cagggtgatg accgaggagc cggccgagga aatagacgac atctccttca
      181 ggccgggcat ctggccgaac tgtttttcca gcggcgcggt gaccgaggtg gtcatcacat
      241 cggggctgcc gcccggcagg aaggtctgca cctggatggt gggataatcc acttccggca
      301 gcgccgacaa aggcaggaac ttgtagcccg ccagccccac cagcaggatg gcgatcatca
      361 gcagcgaggt cgctacgggg cgctggatga acggcgcaga aatattggcg cccatctggg
      421 attcgggcgg agcgctaggc gcggatggtg tggcggtcac tgggggccgc cgccaccgcc
      481 gcccccacgg ggcccgccac caccgccggc gccacggcgc atctgcgcca tggccttgga
      541 gcagtccgcg ccgagttggt cacgattttg gatcaggcac aggcgcacct cgcggccagg
      601 cgtggcgctg ggacacagct tcttgatatc ctcgctgcag gacttggcca gcagcgccgc
      661 attgcgggcg cggagcgcgg tgccggcggc gtcgctagtg cccccggacg gcgcggcgat
      721 cttggcgttc agattgggaa tttcgacatc ggcgccgtcg cgcagccggt cggcgccatc
      781 caccaccacg gtgtcgcccg ccttgatgcc ggacaggatc tggatgttgt tgccgtcctg
      841 cacgccggtc ttgacgttgc gctgagccac agtcttgtcc ggcgtcaccg cgaagacgaa
      901 gctgccatcg gcgccgcgct ggatggcggc gaccggcacc acggtctggt tgtgcaacgt
      961 gtccaccaaa agcttgacgt tcacgaactg ggccgcaaac agcttgttgt cggcattgtc
     1021 gaacaaggcg cgcagcttga ccgagccggt ggtgggatcc accaccgtgt ccaccgccga
     1081 caaggtgccg ctggcgatct tataggtctg gctgcggtca taagcgtcca ccgccagggt
     1141 ggcgccaccg ttcatccgat ccatcaccgc accgatactg tcctcgggga tcgtgaacag
     1201 caccgacatg ggctgaagct gggtcaccac cacgatgccg cccgcctggc tggcttgcac
     1261 gatattgccg atatccacca gatggatgcc ggcgcggccc gccaccggtg agacgatatt
     1321 ggtgtagccc agattgatgc gggcactttc gacattggcc tggtcggaga ccacgacgcc
     1381 ttcggtggac cgtaccaagg cggcctgggt cgccaccgtc tgctgggagg tggcgttctg
     1441 cgccatcagg gcctgatagc gcagcaggtc caccttggcg ttggccaggg tggcggcatc
     1501 gcgcgccagc tggccacgcg cctgatccag cgccgcctga taggggcgcg gatcgatctg
     1561 ggccaaggtg tcgccggcct tgaccatctg accttcggtg aagttcagct tgaccagcat
     1621 gccgccgacc tgcgggcgca ccgtggcggt ggccagcggc gtcaccgtgc ccagcgcgtt
     1681 gagtgtcaca ttgatatcgc cggacgtcgc ccgcgccacg cccaccgact gggcgccctg
     1741 attgatcagg ccgcggcggc ccgcagtctt ggccggatag attgcccaga tcagcagcgc
     1801 cagcagtgcc agccccaagg caaaccacac cagccgggac aggcggggat tgcgggaact
     1861 ccagcccttg acccccgacc aggcccgccc caccggtccc gatgcgcccg gttcggcgcg
     1921 ctgaaaggca gctggggaac ggtcgatatt catcggtcta tccgtgtcac aaaagggccg
     1981 aaaagccccg ggaaagtgaa tatgtcaaat gggttagcac cgcgaaactg aacggggcat
     2041 gaaccttata cccttacagg gctacacctg atatagccgc cgggtaagtg agaaatatgt
     2101 cggaaatgtc gcgataactg gtgcagcggc ctcattaccg gtatgtgggc ctccggcccg
     2161 gaaccggccc gaaaactaga ataggcggac gcgtgtttct cggcatcttt cattggtttg
     2221 ttcacgatgc acgcctttgg gtcaaagtca cggcccaggc ccatccttat tgggcctttc
     2281 ccattgcctt cctcatcgcc ttcaccgagt cctttgtcgg cgtgtccttc atcgtgccgg
     2341 gcaccttctt gctggtaacg ctgggcgggg tgatcggagc cagtcatatc ggcttgtttc
     2401 ccgcctggct gggcgcggtg ctgggctcga ttctgggcga ctggatctcc tggtggatcg
     2461 gctttcatta tcatcacaag atcgtgcatt cctggatctt ccggcgcttc gaggagcaga
     2521 tcgaaaaggc gctgcatctg tttcacaatt ggggtagctg ggcgatcttc atcggccgct
     2581 tcatgggacc gttccgcgcc accgtgccgc tggtggcggg gatgtccgaa ctggaattct
     2641 ggcccttcat ggtcgccaat gccgcctccg ctgtcgtttg ggcctatgtg ctgctggccc
     2701 ctggcgccgc tattttgcgg cactttttcc cctgatttaa aagttatttt tccgtaaggt
     2761 cgccgggcgt gccctttgct tccgcatgcc tttctcccgc taacccaaaa tgggaccgcg
     2821 ttcgaaggtt aattggccgc gtgtcccgct tctggatgca gccgcctctg ttttcgcgcc
     2881 aaaacgggga taaaagcccc gctttctctg gcccgtctcc tgcaacgccc cctcacgaag
     2941 ccatagcccc aaggcttaac cgtgagcagg caggacacat ccgagacggt gatgaaggcg
     3001 gttttccccg cctttgacgg ctttggcctg acgattcccc acgcccccga cagcatcgcc
     3061 gccaagcgga tgctggatat cgccctcgca ggcttgttgg ctgtgctgct cagccccatg
     3121 ctggcactgg tgtcgctggc ggttgcgctg gactccggcg gtcccgtgct gttctgccaa
     3181 aaacgcaccg gcctgaacgg caagactttt ccgattttca aattccgctc catgcatgtg
     3241 ctggaggatg gcgccgaagt ggtgcaagcg tcgaagaacg atgcccgcgt cacgcgggtg
     3301 ggccgcgtca tccgcaagct ttcgctcgac gagctgccgc agctggtcaa cgtcatcgcc
     3361 ggcgacatgt cgctggtcgg tccccgcccc catgcggtgg cgcatgacac ccattatggc
     3421 gccgcgcttt ccaactacgc cgtccgccag caggtcaagc cgggcatcac cggctgggcc
     3481 caggtgaacg gcgcacgcgg cgccacaccc accctggacg tgatgcaaca gcgcatcaat
     3541 ttcgacgcct ggtacgtcgc caacgccaat ctggcgctgg atcttctgat ccttgttcgt
     3601 acgccgctgg aagtgttgcg caccaggaac gcggtctgat gcgcgccgcc ctccccgcac
     3661 aatatgaagt gccgagcctt ccggcgctgg aagccgccaa cgattcctac agcgaagtca
     3721 cggtgggcgg catcaacacc gcctgtctgt cgcgcgacgg cctggcgcgc atgatgctgc
     3781 aggattgcct ggactcccgc gccaatgaca agcgccagcc caagctggtt ttcgcctcca
     3841 acggccatgc catcgcgctg gccgcccagg atgaagcttt ccgctttatc ctcgagcagg
     3901 ccgacattat tcatgccgac ggccaggccg cggtgttcgc ctcgcgcatg accaaaacgc
     3961 cgatccccga gcgcagtgcc accaccgact tcattcacga cgcgtcgcag atcgcagcgg
     4021 agcacggttt gcgcttcttc ctgctgggcg ccaccgagga agccaatgct gaagccgcgc
     4081 gcgtcctggc ggccacttat cccggccttc agatcgtggg ccgccgccac ggctatttca
     4141 gccgcgacga ggaagacgag atctgcgacg agatcaacct gaccctgccg gatgtgatct
     4201 gggtcggcct gtcggtgccg ctggaatatg aattctccgt ccgcaacaag acccgccttc
     4261 gcgccggctg gctggtgacc tgcggcggct gctacaattt cgtcaccggg gcttataagc
     4321 gggcgccccg ttggatgcag accatcggcc tggaatggct gttccgcctg gtgcttgagc
     4381 ccaaaaggct gttctggcgc tatgccgtga ccaatccgct tgcgatattt ttacttttga
     4441 cgcgcacaag ttccctccag acggcgcaat aggaccgcca tgacggtatc ggatagcgtg
     4501 ctgccccccg gatcgcgcgt gccaggcaag gcgctgagca cggcgctgcg ctatggcctg
     4561 tcggcggccg ggccggtggc ggtgtcggcg gcgcatttcc tcgcctcgct gctctttctg
     4621 cgcaatctgc cggcccatga attcggcctg ttctctttcg tgatggtggt ggtgtcgttc
     4681 ggcatgagcc tgaacgcctc gctgatcacc gtgccgatca cccgccatct ggtcaccggc
     4741 gaggcagagg ctcgccccgc ctgcttccag atgaactggc tggtctgtgc cggctttgcc
     4801 gcgctgctgt ttgccgccct gctggccggc ggcgcgccgc tcaaggaggc cgtgctgctg
     4861 gcgctgttcg ccgccgtctt caccttccgc tggttcgcgc gctgttttgc ctatgtcgat
     4921 gaccgtatcg gcgccgccat tcaatcggac ctggtctaca gcctgctgct ggtgggatcg
     4981 ctgggcgcgc tggctatggg tcatcgcgtg accttcgcct tgggcagcga gatgctgctc
     5041 ttgtcggcgc tggcggcgct gctgcctttc ggcctcaaat tcttccgcac ccaactggtt
     5101 tcgctgcgcg gcaatcccaa acgctactgg ccgatcttcc gcgatctcag ccgctggtcg
     5161 ctgatgggcg tgttccttac cgaagtgacg gtcaatgccc atgcctatct ggtgacgttc
     5221 atcgccggtc ccggcgcctt cgcgctgctg gcgctgggca tgctgctcat gcggcccgcc
     5281 tcgctgatgc aatcggcctt gcccgatctg gaacgccccg ccatggcccg cgccatcgcg
     5341 gccaaagaca agcccgcttt gtcgc
//
LOCUS       DATMDK010000091         2848 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_290596,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000091 DATMDK010000000
VERSION     DATMDK010000091.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2848)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2848)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2848
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_290596"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(191..1288)
                     /locus_tag="VNN98_01840"
     CDS             complement(191..1288)
                     /locus_tag="VNN98_01840"
                     /inference="COORDINATES: protein motif:HMM:NF012551.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="endo-1,4-beta-xylanase"
                     /protein_id="HWM60858.1"
                     /translation="MTFHSNMGRRQFLAAGAGALVFPAVAQDMRTLKAIAASKGFVFG
                     SAAASYELKDGDFKPLLLREAGQLVPEYEMKRGALEIKPGVYDFAALDSLFAFAAAGG
                     LSMRGHTLVWYYANPLWLAPMLAARRDETLLTGHVQAVLRRYKMASVDVVNEALAPPG
                     TATRPDGLRPSFWLDTFGPGYIDLAFHAARAADPHVKLVYNDWGFEQGAAENDRFRSV
                     TLRLLDGLLKRGVPVDALGIQGHLSAFGNKVDQRKLHSFLEEVRARGLAVLITELDVE
                     DTGGPYDAAARDRAVADEARRFLDVALDSPATQGVLTWNLSDRYVDPPDGWKLKLLGW
                     RFRKTPYDARMHKKPLWDAMARSFAGRRISY"
     gene            complement(1285..2241)
                     /locus_tag="VNN98_01845"
     CDS             complement(1285..2241)
                     /locus_tag="VNN98_01845"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF025025.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HWM60859.1"
                     /translation="MTVPFFSVIIPVYNRAAILRAAIESVRAQSCQDFEIVVVDDGSK
                     DNPRAVVEAFGDSRIRFIAQPNGGGGKARNTAIDQSRGRFIAPLDSDDIFLTHHLASM
                     KTLLEHNTDMVGYARVRVDRGGGRVFLKPPRAIREGEDMATYLLCDRGFVPTITVVAP
                     RDAASRIRYAENLGPAEDTDFAIRLFLAGYRFHMLEEPGAVWRDEFDPHRTSAGKGGD
                     KLGAWLERMRSSIPARAYHGGRGWAYAKLIVHQHPLKALGLYLNAALRGCYRPSLAMI
                     IALQIFLGRNGYRRLADRAISWLHLGLRERADKAPARKLERA"
     gene            complement(2302..>2848)
                     /locus_tag="VNN98_01850"
     CDS             complement(2302..>2848)
                     /locus_tag="VNN98_01850"
                     /inference="COORDINATES: protein motif:HMM:NF016800.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="O-antigen ligase family protein"
                     /protein_id="HWM60860.1"
                     /translation="GLSRAVLAALAALLVVTLASFVLIDADVIARALEDPTEFTGRSA
                     IWAAELRYIADHPLLGAGFGTFTDTRGQSPLHNYVSGSWVVAVSHGHNGYLQVLVTIG
                     GVGFFLAMLALLAAPVRRFWTLDWEESAFKPMLLALFVFAILHNFMESDFLEGDGVTW
                     ASLLLVIAALNGNARHTLRGR"
BASE COUNT          566 a          922 c          899 g          461 t
ORIGIN      
        1 agccccccaa ggctttaacg tgtaacgctg ccctgcctga cgaatggtta acgccagcat
       61 ggacggtggc ttgtcaggct ccaaaaaccg ggctttttgc cgttaaagcg gatgtcgcga
      121 cactttccag cagggctcgg cggcttgcgg cgcgtccgat gatggctatc gccagatctc
      181 gcgccacggc tcaataggat atccgccggc cggcaaagct ccgcgccatc gcatcccaga
      241 gcggcttctt gtgcatccgc gcgtcatagg gcgtcttgcg gaagcgccag cccagcagct
      301 tcaatttcca tccgtcgggc ggatcgacat agcggtccga caggttccag gtcagcacgc
      361 cttgcgtggc gggactgtcc agcgccacgt ccaggaaacg ccgcgcctca tccgccaccg
      421 cccggtcgcg cgcggccgca tcgtaaggcc cgcccgtatc ctcgacgtcc agttcggtga
      481 tcagcaccgc caagcccctg gcgcggacct cctccaggaa gctgtgcagt ttgcgctgat
      541 ccactttgtt gccgaaagcg gaaagatggc cttggattcc caaggcatcg accggcacgc
      601 cccgcttcaa cagcccgtcg aggaggcgca aggtgacgct gcgaaagcgg tcattctccg
      661 ccgcgccctg ttcaaagccc caatcgttat agaccagctt gacgtgggga tcggcggcgc
      721 gcgccgcatg gaaggcgaga tcgatatagc cgggaccgaa ggtgtccagc cagaacgatg
      781 gcctgaggcc atcgggccgg gtggcggtgc ccggcggcgc cagtgcctca ttgaccacat
      841 ccaccgaggc cattttgtaa cgccgcaaca cggcctgaac atggccggtc agcagcgtct
      901 cgtcgcgccg cgccgccagc atgggtgcca gccaaagcgg gttggcgtaa taccacacca
      961 gagtgtggcc gcgcatggag agtccgcccg cggcggcgaa ggcaaacaag gagtcgagtg
     1021 cggcaaagtc atagacgccg ggtttgattt ccagcgcccc tcgcttcatt tcatattccg
     1081 gcaccagctg ccccgcctcg cgcagcagca gcggtttgaa gtcgccgtct ttcagttcat
     1141 aacttgcagc tgcgctgccg aagacaaagc ctttcgacgc cgcgatggcc ttgagggtgc
     1201 gcatatcctg cgccactgcg ggaaacacca gggcgccggc gccggccgcc agaaattgcc
     1261 gccgccccat attggaatga aaagtcacgc ccgttccagc ttgcgcgccg gggccttgtc
     1321 ggcccgttcg cgcaaaccga gatgcaacca ggaaatggcg cgatcggcga ggcggcgata
     1381 gccgttgcgg ccgaggaaaa tctgcaaggc gatgatcatc gccaatgacg gccggtaaca
     1441 gccgcgcagc gccgcattga gatacagacc caaagccttc agcggatgtt ggtgcacgat
     1501 cagtttggca taggcccagc cgcgcccgcc atgataggcg cgggcgggaa tcgaagaccg
     1561 catgcgctcc agccaggcgc ccagcttgtc accgcctttg ccggccgacg tgcggtgcgg
     1621 atcgaactcg tcccgccata ctgcgccggg ctcttccagc atgtggaagc gatagccggc
     1681 caggaacagg cggatggcga aatcggtatc ctcggccggg cccagattct cggcatagcg
     1741 gatgcgcgag gccgcatcgc gcggtgccac caccgtgatg gtgggcacaa agccgcggtc
     1801 gcacagcaga taggtcgcca tgtcttcacc ttcgcgaatg gcgcgcggcg gcttcaggaa
     1861 cacgcggccc ccgccgcgat ccacccgcac ccgggcatag ccgaccatgt cggtgttgtg
     1921 ctccagcaat gtcttcatgc tggccagatg atgggtgagg aagatatcgt cggaatccag
     1981 cggtgcgatg aagcggccgc gcgactggtc tatcgcggta ttgcgcgcct tgccgccgcc
     2041 gccattgggc tgggcgataa agcggatgcg cgaatcgccg aaagcttcca ccacggcgcg
     2101 gggattgtcc ttggagccgt catccaccac cacgatctcg aaatcctggc agctctgggc
     2161 gcgcacggat tcgattgccg cgcgcaagat tgccgcgcgg ttgtagaccg ggatgatgac
     2221 gctgaagaac gggacggtca tgacggtggc aatctagcgg accgatgtta gcgtctcgtt
     2281 aataatgaca cccggtaaca cttaacggcc acgaagcgtg tggcgcgcgt tgccgttcaa
     2341 ggccgcaatc accagcaaaa gcgaggccca ggtgacgcca tcgccctcca ggaaatccga
     2401 ttccatgaaa ttgtgcagga tggcaaaaac gaacaaagcc agcagcatgg gtttgaaggc
     2461 gctttcctcc cagtccaagg tccagaagcg ccgcaccggc gcggccagca gcgccagcat
     2521 tgccaaaaag aatcccacgc cgccgatggt gaccaggacc tgcagatagc cgttatgacc
     2581 atggctgacg gcaaccaccc agctgccgct gacataattg tgcagcgggg attgaccgcg
     2641 cgtgtcggtg aaagtgccga aacccgcacc cagcagcggg tggtcggcga tatagcgcag
     2701 ctccgccgcc cagatggcgg agcggccggt gaattcggtc gggtcttcca gcgcccgggc
     2761 gatgacgtcg gcgtcgatca gcacaaagga cgccagcgtg acgacgagca aggccgccag
     2821 cgccgccagc acggcgcgcg acaggcca
//
LOCUS       DATMDK010000092         2005 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_514294,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000092 DATMDK010000000
VERSION     DATMDK010000092.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2005)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2005)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2005
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_514294"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            172..1281
                     /gene="mltG"
                     /locus_tag="VNN98_01855"
     CDS             172..1281
                     /gene="mltG"
                     /locus_tag="VNN98_01855"
                     /inference="COORDINATES: protein motif:HMM:NF014656.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008932 - lytic endotransglycosylase
                     activity [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0071555 - cell wall organization [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="endolytic transglycosylase MltG"
                     /protein_id="HWM60861.1"
                     /translation="MRFFFFLVILAVIAAGAVEWANAAWDVPGLPAASGKETVVLIPP
                     HSRTHDIAQMLEQKGVMKYSLVFELDLRLRGLTGKIKAGEYAIPSQASMGAIAAILVE
                     GKSIQHKLTAAEGLTSDMIWKLVQGDSVLVGDAGPAPQEGSLLPETYLFTRGETRAHI
                     LVQMAKAQEKFFNEKWLGRAAGLPFHSAREAVILASIVEKETSLPEERRHIAAVFINR
                     LKAGMKLQTDPTIIYGLTKGYPLGRGIRQSEIEGATPYNTYVIAGLPPGPICNPGKDS
                     LAAVLNPEPSDDLFFVATGKGGHVFASTISEQARNVAAYRAFERQQQAPEPESRQVEP
                     SARVDNPEVAVPDAVTPKLPAARDKVLHKRVRHHR"
     gene            1328..>2005
                     /locus_tag="VNN98_01860"
     CDS             1328..>2005
                     /locus_tag="VNN98_01860"
                     /inference="COORDINATES: protein motif:HMM:NF015699.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016788 - hydrolase activity, acting on
                     ester bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YicC/YloC family endoribonuclease"
                     /protein_id="HWM60862.1"
                     /translation="MTFASMTGFAESAGSHEGVRWRWEAKSVNGRSLDMRLRTPPGYD
                     GLEAPARRLAGERFLRGAFQISLTVEEQEAARGLRVDAAALASAVRIAREVAAETGMA
                     PARVDGLLALKGVIVADEGAVPLDPVIRAHRDAAILESLAAALDKLVKERCSEGAKLA
                     ALLTAQMNGIEKLVGEAGRLAAAQPQVLRARLNAQLKELLDAAPVSEDRLAQEVALLA
                     VKADVREE"
BASE COUNT          367 a          651 c          671 g          316 t
ORIGIN      
        1 ggccatgcgt gatggcatgg tgccgcccac catcaacctg gacaatcccg acgtcaccac
       61 cgccctggac ctggtgccgc acaaggcgca gaaatgcgac gtcaacattg ccatgtccaa
      121 cagcttcggc ttcggcggca ccaatgctgc gctgatcctg tccaagatct gatgcgcttt
      181 ttctttttcc tggtcattct cgccgtcatc gccgccggcg cggtggaatg ggccaatgcc
      241 gcctgggacg tgcccggcct gcccgcagca tccgggaaag agactgtcgt cctgatcccg
      301 ccgcacagcc gcacccacga catcgcccag atgctggagc aaaagggcgt gatgaagtat
      361 agcctggtgt tcgaactcga cctgcgcctg cgcggcctga cgggcaagat caaggcgggc
      421 gaatatgcca ttccttcgca agcctcgatg ggcgccatcg ccgcaattct ggtggagggc
      481 aagtccatcc agcacaaact gaccgccgcg gaaggcctga ccagcgacat gatctggaag
      541 ctggtgcaag gtgactcggt gctggtgggc gatgccgggc cggcgcccca ggaaggcagc
      601 ttgctgccgg agacctatct gttcacccga ggcgagaccc gcgcccatat cctggtccag
      661 atggccaagg cgcaggagaa attcttcaac gaaaaatggc tcggccgcgc cgcgggcctg
      721 ccattccatt ctgcgcgcga agccgtgatc ctggcctcga tcgtggaaaa ggaaacttcg
      781 ctgccggaag agcgccgcca tatcgccgcc gtcttcatca accgcctcaa ggccggcatg
      841 aagctgcaga ccgatcccac catcatctac ggcctgacca agggttatcc tttgggccgc
      901 ggtatccgcc agagcgagat cgaaggggcc acgccctaca atacctatgt catcgccggg
      961 ctgccgccgg ggccgatctg caatcccggc aaggattcgc ttgccgcagt gctcaacccc
     1021 gaaccgagcg acgacctgtt cttcgtcgcc accggcaagg gcgggcatgt cttcgcgtcc
     1081 accatttcgg aacaggcgcg caatgtcgcg gcctatcgcg ccttcgagcg ccagcaacag
     1141 gcgccggaac cggagagccg ccaggtcgaa cccagcgccc gggtggacaa cccggaggtt
     1201 gcggtgccgg atgcagtgac gcccaagctg ccggcggccc gggacaaagt cctgcacaag
     1261 cgcgtccgtc accacaggtg acagggccaa cgcccgcgcg ctagtttcgc ggccgcagga
     1321 gcacagtatg actttcgcca gcatgaccgg ttttgccgaa agcgcaggca gccatgaagg
     1381 ggtgcgctgg cgctgggaag ccaagagcgt caatggccgc agcctggata tgcggctgcg
     1441 cacgccgccg ggctatgacg ggctggaagc gccggcgcgg cggctggccg gcgagcgctt
     1501 tttgcgcggc gcttttcaga tttccctcac cgtcgaggag caggaagcgg cgcgcggcct
     1561 tcgggtggat gcagccgccc tggccagtgc ggtccgaatc gcgcgcgagg tcgctgcgga
     1621 aaccggcatg gcgccggcgc gggtggacgg ccttctggcg ctcaagggcg tgatcgtggc
     1681 cgacgagggc gccgtcccgc tggatccggt gatccgcgcc catcgcgatg ccgccatcct
     1741 ggaaagcctg gcggccgcac tcgacaagtt ggtgaaggag cgctgcagcg aaggcgccaa
     1801 gctggcggcg ctgctgacgg cgcagatgaa cgggatcgaa aaactcgtcg gtgaagcagg
     1861 ccgcctggcc gcggcgcagc cccaggtctt gcgggcgcgg ctgaacgcgc agttgaagga
     1921 attgctggat gcggcgcctg tttcggaaga ccggctggcg caggaagtgg cgctgctggc
     1981 ggtgaaggcc gatgtgcgcg aggag
//
LOCUS       DATMDK010000093         2257 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_3017606,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000093 DATMDK010000000
VERSION     DATMDK010000093.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2257)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2257)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2257
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3017606"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            3..1288
                     /locus_tag="VNN98_01865"
                     /pseudo
     CDS             3..1288
                     /locus_tag="VNN98_01865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009820019.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS1380 family transposase"
     gene            1512..>2257
                     /locus_tag="VNN98_01870"
     CDS             1512..>2257
                     /locus_tag="VNN98_01870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019706040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS5 family transposase"
                     /protein_id="HWM60863.1"
                     /translation="MWTEITRPQYQRGGLRYASDTTDGEWAVIAALMPPPHKGRGRRR
                     TTPLRAVVNAIFYIAQSGCQWRMLPKDFPPFTTVQHYFYPWRDNGLWRQINHVLLMLA
                     REAVGREASPSAGVIDSQSVKTTEAGGPRGYDAGKKIKGRKRHILTDTTGLLVGAIVH
                     EASLQDRDGAPLLLAAVRYAFPWLRHVFADAGYAGDKLQTALKKLGKWTIEIVKRVQA
                     TPGFHLIKRRWVVERTIAWLNRNRRLAKDF"
BASE COUNT          426 a          762 c          702 g          367 t
ORIGIN      
        1 cggtgcacgt ggcctttgat ggcggcctga tgacctcgga cgccggggta ttgctgctgg
       61 cggcaatcga gcagcggctg gggatcgccg agcgcctggc cgattgcatc gaggaccggc
      121 gagcgccgga acgggtgcgg catacgctcg ccgagatgat ccgctatcgg gcactgctga
      181 tcgcggcggg ctatcccgat ggcaacgact gtgatgcgct gaagtctgat cccgccttca
      241 agatggcggt aggacggctg cccgagagcg gcgccgactt gtgctcgcaa ccgaccatca
      301 gccggctgga gaacctgccc ggcccgaccg cgctcaagcg gatgatggcg gcgatggtgg
      361 aagtattctg cgacagcttc gagcaggtgc cgcgccgcat cgtgctcgat attgacgaca
      421 ccgaggaccg ggttcacggc ggccagcaac tcgcgctgtt caacgcctat tacgacagcc
      481 gctgctttca gccgatccat atctatgaag cgaccaccgg caagcccgtc gccatcatcc
      541 tgcgcccggc aagacgccgg acggcgccga ggtaaccctg gtgttgcgcc atgtcatcgg
      601 ccgcatccgc gctcgctggc cggcggttga catcgtggtg cgcggcgaca gccattacgc
      661 ccggacgcaa gcgatggcgt ggtgcgagcg caagcgcatc ggctacatct ttggcctcgc
      721 cggcaatccg gtgctgctcg gccgggtcgg cgatcttgct gaagatgctg gcttgggccg
      781 gatcggcggc gaaggcgaca aggtccgccg ttacggcgaa ttgcgctatg ccgccaaaag
      841 ctggaaaacc gagcgccgcg tcatcgcccg cgtcgaggcc ggaccccagg gcgccgacag
      901 ccgcttcatc gtcaccaacc tcgcgggcct gcccaaatcg ctctacgaaa aggtctactg
      961 cgccaggggc caggccgaga acctgatcaa ggcgcataag ctgcacctca cctccgaccg
     1021 cacctcgtgc accaaggcca ccgccaacca gttccgcctg ttgatccaca ccgccgccta
     1081 ctggctgatg ttgagcctgc gcgggctggc accccgcaca tcgttctggc gcgacgccca
     1141 gttcgacacg atccgccttt gcctgatcaa ggttgccggg cgggtgaccg agatggtcac
     1201 ccggatcaag atcgccctgc caaccgccta cccctatcag gtcgggttcg ccgatttcgc
     1261 cggccgcctc gccaaattgc cgccgtgaac aacggggcgg tgtgccccac aaacaaaccc
     1321 ttcggtgcaa ccgcaaaccc cgatcagccg cgtcccaggc gccaccaaaa actgcgccag
     1381 gaggccgcgg tcaccccaca tcctcagggg cctcatgaat gatccgggtt agaggctgac
     1441 ccaaaattaa ggttagtgat ttcagtgtct tgtgattctg tcgtgtttgc gagagacgac
     1501 ggaggcacaa gatgtggaca gaaatcactc gaccgcagta tcagcggggt gggcttcgct
     1561 atgcaagcga caccaccgat ggcgaatggg cggtgatcgc ggcgttgatg ccaccgccgc
     1621 acaaggggcg cgggcggcgg cgcacgacgc cgctgcgagc ggtggtgaac gccatcttct
     1681 acatcgccca gagcggctgc cagtggcgca tgctgcccaa ggatttcccg ccctttacca
     1741 cggtgcagca ctacttctat ccctggcgcg acaacggcct gtggcggcag atcaaccatg
     1801 tcctgctgat gctggcgcgt gaagcggtgg gccgcgaagc gagtccctcc gccggggtca
     1861 tcgacagcca gtcggtcaag accaccgaag ccggcggccc gcgagggtat gacgccggca
     1921 agaagatcaa gggccgcaag cgccacatcc tgaccgacac aacgggcttg ctggtcggcg
     1981 cgatcgtgca tgaagcaagc ctccaggatc gtgatggagc cccgctcctc ctcgccgccg
     2041 tccgctatgc ctttccctgg ctgcgccatg tcttcgccga tgccggctac gccggcgaca
     2101 aactccaaac cgcactcaaa aagctcggca agtggacgat cgaaatcgtc aagagggtcc
     2161 aagccacccc aggcttccac ctcatcaaac gccgctgggt tgtcgagcgc accatcgcct
     2221 ggctcaaccg aaaccgccgg ctcgccaagg acttcga
//
LOCUS       DATMDK010000094         2043 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_732822,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000094 DATMDK010000000
VERSION     DATMDK010000094.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2043)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2043)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2043
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_732822"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..308
                     /locus_tag="VNN98_01875"
     CDS             <1..308
                     /locus_tag="VNN98_01875"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM60864.1"
                     /translation="LIVEPGQFRTELAGGAMRHMPEIGAYKDVIGGTRAFAHQMHQTQ
                     DGDPAKAARAIEAALDAPATPLRLVLGHDAVDAIRAHAQTLLTDMQAWEELSRSTSF"
     gene            513..1205
                     /locus_tag="VNN98_01880"
     CDS             513..1205
                     /locus_tag="VNN98_01880"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HWM60865.1"
                     /translation="MSSAVSLRQVIKHYRRGKESVEVLHGLSLEIPEGEFVSLMGPSG
                     SGKTTILNLVGGLDHADSGEVIVGGEHLEKMSGGQLTKWRAGHIGFIFQFYNLMPMLS
                     AAGNVELPLLLTHLSKAERRRRVDVALQIVGLSDRAAHKPGEMSGGQQQRVGIARAIV
                     ADPPILLCDEPTGDLDRTTADEILGLLQQLNRQHNKTIVMVTHDPKAADHASRQLEMD
                     KGQLIERVLARA"
     gene            1235..>2043
                     /locus_tag="VNN98_01885"
     CDS             1235..>2043
                     /locus_tag="VNN98_01885"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HWM60866.1"
                     /translation="MRKPARAVLTLLSVMVAFTLFGLTIGMNATFAKVQEEARNDRIY
                     SFARFSGGPSALPIALAGQIERLPGVAMVSGDTFIAGYHQDPKNRVFVQMHDDKIAKV
                     MTEWPITPQQWQLIRDNRRGMIVSKMQADRWHLKIGDTFTIAAPMIKKADGTNSWTFQ
                     VVAITDDVAYMTQGYMQGNYDYMDKARVLSDQGKVGQFRVMVTDPSHTADIAERIDNA
                     FANSTTPIQSITEKAALDISNVGMDLASVDRDVAIAGMFMVLFLTANGIAQA"
BASE COUNT          418 a          642 c          600 g          383 t
ORIGIN      
        1 ttcttatcgt cgagcccggc caattccgca ccgaactggc gggcggcgcc atgcgccaca
       61 tgccggagat cggtgcttat aaagacgtga ttggcggcac gcgcgccttt gcccaccaga
      121 tgcatcagac ccaggacggc gatccggcca aggcggcgcg cgcgattgaa gctgcgctgg
      181 atgcgcccgc cacaccgctg cgcctggtgc tgggccatga tgcggtggac gccatccgcg
      241 cccatgccca aactttgctc accgatatgc aggcatggga ggaattgtcg cgcagcacca
      301 gcttctgata cgtcccgccg aaccggcttc gcatcattgg ctgacattct atcaattacg
      361 cctgcgagcc tgctcgccgc tctcgtaaaa gatttgtcag gaatagtgac tggacattgg
      421 tatcgtgtta tgcaagatag ccataccggg ctgggttgac cggcattgcg gtggccgtgc
      481 gttcctgaaa acttaaaata aagggcaggc tcatgtcgtc agcggtgtca ttgcgtcagg
      541 tcatcaagca ttaccggcgg ggcaaggaat ccgtcgaagt cctgcatggg ctgagcctgg
      601 aaattcctga aggcgaattc gtttcgctga tggggccgtc aggctcgggc aagaccacca
      661 tccttaacct ggtcggcgga ttggatcatg ccgactcggg cgaggtcatt gtcggcggcg
      721 aacatctgga gaagatgtcc ggcggccagc tcaccaagtg gcgcgccggc catatcggct
      781 tcatcttcca attttacaat ctgatgccca tgctatcagc ggcgggcaat gttgaactgc
      841 cgctgctgct gacccacctg tccaaggcgg agcgccgccg cagagtcgat gtggcgcttc
      901 agatcgtggg cctgtccgac cgcgccgccc acaaaccggg cgaaatgtcg ggcggccagc
      961 aacagcgcgt cggtattgcg cgggccatcg tcgccgatcc cccaatcctg ctgtgcgacg
     1021 aacccaccgg cgatttggac cgcaccaccg ccgacgaaat cctgggcctg ttgcaacagc
     1081 tcaaccgcca gcacaacaag accatcgtga tggtgacaca tgatcccaag gccgccgacc
     1141 atgccagccg ccagctggag atggacaagg gccagctgat cgaacgcgtc ctggcccgcg
     1201 catgaaatac cttcccctcg tctgggccgc gatcatgaga aagcccgcgc gggcggtgct
     1261 gacgctgttg tcggtgatgg tggcttttac cttgttcggg ctgaccattg gcatgaacgc
     1321 caccttcgcc aaagtgcagg aagaggcgcg caacgaccgc atttattcct tcgcgcgctt
     1381 ttcgggcggc cccagcgcac tgcccatcgc ccttgcgggc cagattgaaa gactgccggg
     1441 tgtcgcaatg gtctccggcg atacctttat tgccggctat catcaggacc ccaagaatcg
     1501 cgtttttgtc cagatgcatg acgacaagat cgccaaggtg atgaccgaat ggccgatcac
     1561 gccccagcaa tggcagctga tccgcgacaa ccgccggggc atgatcgtca gcaagatgca
     1621 ggcggatcgc tggcatctca agatcggcga caccttcacc attgccgcgc ccatgatcaa
     1681 aaaggcggac ggcaccaaca gctggacgtt ccaggtcgtg gcgataaccg atgacgtggc
     1741 gtacatgacc cagggctaca tgcagggcaa ttacgattat atggacaagg cgcgcgtgct
     1801 gtccgaccaa ggcaaggtcg gccagttccg ggtgatggtc accgatccca gccacaccgc
     1861 cgacatcgct gaacgtatcg acaacgcctt cgccaactcc accaccccga tacagtccat
     1921 caccgagaaa gccgcgctcg atatctccaa tgtcgggatg gacctcgcgt cggtcgatcg
     1981 cgacgtcgcg atcgccggca tgttcatggt gctgttcctg accgccaacg gcattgccca
     2041 ggc
//
LOCUS       DATMDK010000095         2323 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_291838,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000095 DATMDK010000000
VERSION     DATMDK010000095.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2323)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2323)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2323
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_291838"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(62..853)
                     /locus_tag="VNN98_01890"
     CDS             complement(62..853)
                     /locus_tag="VNN98_01890"
                     /inference="COORDINATES: protein motif:HMM:NF012774.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thermonuclease family protein"
                     /protein_id="HWM60867.1"
                     /translation="MRGIPLTYWLFWAAMCLPLDAYAASYSDAGYLPDCADSVEIAHA
                     HVARVEQNGALILPDGRAVLLEGIRLPQQGDGPRFLADQALAALRDMALAGPVTFTAT
                     APKEDRYDRIRVQGFGRQWFQVALLEQGLARVAIAPDRNECAPDLYEAEARARARHAG
                     IWALAAYQTRKPEAMKGTSGTFQVVDGWVTNVSGGGGRVFIDFGSNGQRSFSAIIAPE
                     DRRAFRDFDLDGLTAHHIRIRGTVQDYRGRPEIALSNPSQIEVLN"
     gene            936..1850
                     /locus_tag="VNN98_01895"
     CDS             936..1850
                     /locus_tag="VNN98_01895"
                     /inference="COORDINATES: protein motif:HMM:NF044972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008381 - mechanosensitive monoatomic ion
                     channel activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel family protein"
                     /protein_id="HWM60868.1"
                     /translation="MALSALPASLPTLAAMPGDVKDALPALTVMMVNGAWSFLIAVLI
                     LIAGWAVASWVGRWVHDLIGRSHYIDETLKPLITNFARYGILAVTVVAVLSQFGVQTT
                     SLIALLGAAGLAIGLALQGTLSNVASGVMLLVLRPFRVYDKIKVTDAVGTVREIGLFR
                     TELITDEGSYISIPNATIFSASITNLSREGRRRTDFSVEVDRSENLDVVQKVILECLD
                     REPQVLKTPAPIVQVESLGPVSTILSVRAWAENRDFLTTLSDVKKRVRHGLEAANITA
                     PVPVPAPAVAPWTPPAEQPKDEQGKKPN"
     gene            complement(1847..>2323)
                     /locus_tag="VNN98_01900"
     CDS             complement(1847..>2323)
                     /locus_tag="VNN98_01900"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM60869.1"
                     /translation="KACIPHLKKAANPHVVMLSPPLDLRPQWFAPHLAYTMAKYGMSL
                     CVLGMAEEFKGEIAFNALWPRTAIATAALRNVLSGEEGIAHCRKPEIVADAAWHLFQK
                     PKSFSGNFLIDDTFLAQNGVTDFDQYWVDPSKDLLPDFFVPDDAVLPRGVTLKAKI"
BASE COUNT          432 a          752 c          718 g          421 t
ORIGIN      
        1 ttttcacacc gagcctgcgt caccttggtg gcccgcattc gcgggccatg acacttgggg
       61 gttagttcag cacttcaatc tgcgacggat tcgacagcgc gatctccggg cggccgcgat
      121 agtcctgcac cgtgccgcga atgcggatgt ggtgggcggt caagccgtcc aggtcgaagt
      181 cgcggaaggc gcggcggtcc tcgggcgcga tgatggcgga aaaactgcgc tggccgttgc
      241 tgccgaaatc gatgaacacc cgtccgccgc cgccggagac attggtcacc cagccatcca
      301 cgacctggaa ggtgccgctg gtgcctttca tcgcctcagg cttgcgggtc tgataggccg
      361 ccagcgccca gatcccggca tgcctggcac gggcgcgggc ctccgcctcg tacaggtccg
      421 gagcgcattc gttgcggtcc ggcgcgatcg ccacccgcgc cagcccctgt tccagcagcg
      481 ccacctggaa ccattgacgg ccaaacccct gcacccgtat ccggtcgtag cggtcttcct
      541 tgggcgctgt ggcggtaaag gtcacaggtc ccgccagcgc catgtcgcgc agcgccgcca
      601 gggcctggtc ggcaagaaaa cgcggcccgt cgccttgctg cggcaagcgg atgccttcca
      661 gcagcacagc gcgaccatcg ggcaggatca gggcgccatt ctgttccacc cgcgccacat
      721 gggcatgggc gatctctacg ctgtcggcac aatcgggcag atatccggcg tcggaataac
      781 ttgccgcata agcgtccagc ggcaaacaca ttgccgccca aaagagccaa taggtcaggg
      841 gaataccgcg catgcgccca taggttccaa aaccccattg gcggtcaagc gttgtccaaa
      901 tacgcgccgc gcaaaatcga tcgaaggtta acggcatggc tctttccgcg cttccggcat
      961 cgctccccac gcttgcggcc atgcccggcg acgtgaaaga cgccctgccc gccttgaccg
     1021 tgatgatggt caatggcgcg tggagtttcc tgatcgccgt cctgatcctg atcgccggct
     1081 gggcggtggc aagctgggtg ggccgctggg tgcacgacct gatcgggcgc agccattaca
     1141 tcgacgaaac actgaagccg ctgatcacca acttcgcgcg ttacggcatc ctcgccgtca
     1201 ccgtggtggc ggtgctgagc cagttcgggg tccagaccac gtcactgatc gcccttctgg
     1261 gcgccgccgg cctggcgatt ggcctggcgc tgcaaggaac gctttccaat gtcgcatcgg
     1321 gcgtgatgct gctggtcctc aggccctttc gtgtctatga caagatcaag gtgacggatg
     1381 ccgtcggcac ggtgcgcgag atcggactgt ttcgcaccga gctgatcacc gacgaaggca
     1441 gttacatatc cattcccaac gccacgattt tctccgcctc cattaccaat ctctcacgtg
     1501 agggcagacg gcggaccgat ttcagcgtcg aagtcgaccg cagcgagaat ctcgacgtcg
     1561 tgcaaaaagt catcctggaa tgtttggacc gcgagccgca ggtgctgaag accccggcgc
     1621 ccatagtgca ggtggaaagc ctgggcccgg tttccaccat cctttcggta agggcgtggg
     1681 cggagaaccg ggatttcctc accactctgt cggacgtgaa aaagcgcgtg cggcatggcc
     1741 tggaagccgc caatatcacc gccccggtgc cagtgcccgc gcccgccgtg gcgccctgga
     1801 cgccgccggc cgagcagccc aaggacgaac aaggcaagaa accgaattag attttggcct
     1861 tcaaggtcac gcctcgcggc agcacggcat catcgggcac gaagaaatcc ggcagaagat
     1921 cttttgacgg gtcgacccag tattggtcga aatccgtcac gccattctga gccaagaatg
     1981 tgtcgtcgat caggaaattg ccgctgaagc ttttgggctt ttgaaataag tgccaggccg
     2041 catcggccac gatctcgggc ttgcggcaat gggcgatgcc ctcctccccg ctcagcacat
     2101 tgcgcagggc ggcggtggcg atggcggtgc gcggccacaa ggcgttaaag gcgatctcgc
     2161 ccttgaactc ttccgccatc cccagcacac acaggctcat gccgtatttc gccatcgtgt
     2221 aggccaggtg cggcgcgaac cattgggggc gcaggtccag cggcggcgac agcatcacca
     2281 catgcgggtt ggccgctttc ttcagatgcg gaatgcaggc ctt
//
LOCUS       DATMDK010000096         2844 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2103957,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000096 DATMDK010000000
VERSION     DATMDK010000096.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2844)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2844)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2844
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2103957"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..660)
                     /locus_tag="VNN98_01905"
     CDS             complement(<1..660)
                     /locus_tag="VNN98_01905"
                     /EC_number="1.3.5.1"
                     /inference="COORDINATES: protein motif:HMM:NF004616.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008177 - succinate dehydrogenase
                     (ubiquinone) activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase iron-sulfur subunit"
                     /protein_id="HWM60870.1"
                     /translation="MVEIMLPKNSRVKKGKVWPADKAANGKKPKRSKEFKVYRYNPDA
                     GENPSVDTYTVDLDSCGPMVLDALIKIKNEIDPTLAFRRSCREGVCGSCAMNIAGGNT
                     LACTKAINDCSGAVSVYPLPHMPVVKDLVPDLTNFYAQYSSIQPFLKTKTAEPEKEWQ
                     QSPEDRAKLDGLYECILCACCSTSCPSYWWNSERYLGPAALLQSYRWLIDSRDEETGE
                     RL"
     gene            complement(951..2642)
                     /locus_tag="VNN98_01910"
     CDS             complement(951..2642)
                     /locus_tag="VNN98_01910"
                     /inference="COORDINATES: protein motif:HMM:NF019552.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016829 - lyase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="heparinase II/III family protein"
                     /protein_id="HWM60871.1"
                     /translation="MVPLLPELIRAGLRRVATPARVWWRRNWVYRRLLKGPLADHIVF
                     HPWDATPRRLEEADSLLRGRFRFYGIHVDVPDGVSVFDLPPPNPAWHAALHSFAWLPA
                     LSNAGGDNARRLATNLIGQWVKRHGGYSEPVWAPHIMARRLAALFSHGRLVILNSEMM
                     WRSRLFVSLREQSKMLERICGEAPDGLPRLEAAAVLALSGLCLDDSARRRHAGLARLE
                     QEIERQILPDGGHVSRSPEALLAAYRHVIMVMESLSAAGEEPPHTLRNVHDRMAPMLR
                     FFRHADGALALFNGGAEGDPRMIAGLLARDDVRGQPFHHARHSAYQRLTAGRTLCLLD
                     CGKTPDGAFALDAHAGAGAFELSSGPDRIVVNCGAGGLTHQTWNWALRATAAHSTLTL
                     SDTSSAHILPAGLARDLLGPRLMGGPKVPLSRRVETAQGWTMEAMHDAYVELFGVRHE
                     RQITLSPQGLMVTGRDRLVPASDPPDSAAVRNFAVRFHIHPDVRVSPLDGGGILLKLP
                     GGEGWRFRAGGGALSVEGSVYLGGPMVRRAEQLVISGTMKDSPAEIAWVFEQIVA"
     gene            complement(2660..>2844)
                     /locus_tag="VNN98_01915"
     CDS             complement(2660..>2844)
                     /locus_tag="VNN98_01915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005267383.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ribulose-phosphate 3-epimerase"
                     /protein_id="HWM60872.1"
                     /translation="AARKRIDATGRDIALEVDGGITPDTAKRAIAAGATVLVAGTAVF
                     QGGPSKYAANIAALRG"
BASE COUNT          504 a          947 c          917 g          476 t
ORIGIN      
        1 cagccgctcg ccggtttcct cgtcacggct gtcgatcagc cagcgatagg attgcagcag
       61 cgccgccggt cccagatagc gttccgaatt ccaccagtag ctggggcatg aggtcgagca
      121 gcaggcgcag agaatgcact cgtaaagccc gtccagcttg gcgcggtctt ccggcgactg
      181 ctgccattcc ttttccggct cggcggtctt ggtcttgaga aaaggctgga tggaggaata
      241 ttgggcgtag aaattggtca ggtccggcac caggtccttg accaccggca tatgcggcaa
      301 cggatagacg ctgaccgcgc ccgaacaatc gttgatcgcc ttggtgcagg ccaaggtgtt
      361 gccgcccgcg atgttcatgg cgcaggaacc gcacacgcct tcgcggcagg agcggcggaa
      421 ggccagggtc ggatcgatct cgttcttgat cttgatcagc gcgtccagga ccatggggcc
      481 gcagctgtcc agatccaccg tataggtgtc caccgacgga ttttcgccgg catcgggatt
      541 gtagcggtag accttgaatt ccttgctgcg cttgggcttc ttgccgttgg ccgccttgtc
      601 ggcgggccac actttgccct ttttcacccg gctgtttttc ggcagcatga tctcgaccat
      661 aaacggctcc tggaggcgtt gcgtgcagat tgccagtgcg ggcggtccgg aacaacccca
      721 ttagtgtcct gagtcatttt gacttgagag gaactacact ctgggtgtca tggcccgcaa
      781 atgcgggcca cccaggtggg cagcctcaat atcgaagaac ctggctgcgg cctatttttc
      841 gacattcgcg attggtgtca cctgggcggc ccggattccc gggccgtgac aataggggta
      901 aggccaacca aaacgccttc gcttccacgt acaggttacg gaaccgaact ctatgcgact
      961 atctgttcga acacccatgc aatttcggcg ggagaatcct tcatcgtccc gctgatcacc
     1021 agctgttcgg cccggcgcac catggggccg cccagataga cgcttccctc cacgctcagc
     1081 gcgccgccgc cggccctgaa gcgccaaccc tctccgcccg gcagcttgag caggatgccg
     1141 ccgccgtcca gcggcgacac ccgcacatcg ggatggatat ggaaacgcac cgcgaaattg
     1201 cgcaccgcgg cagagtccgg cggatcggaa gccggcacca gccggtcgcg ccccgtcacc
     1261 atcagccctt gcggcgacaa ggtgatctgg cgttcgtggc gcaccccgaa cagttcgaca
     1321 taggcgtcgt gcatcgcttc catcgtccag ccctgggcag tctccacccg gcgcgacaag
     1381 ggcaccttcg gcccgcccat caggcgcggg cccagcaggt cgcgggccag gcccgcaggc
     1441 aggatgtgag cgctggaggt gtcggacagg gtcaaggtgg aatgggcggc ggtggcacgc
     1501 agggcccagt tccaagtctg atgcgtcagt ccgccggcgc cgcaattgac cacgatgcgg
     1561 tcaggaccgg aggagagttc gaacgcgcct gccccggcat gggcgtccaa tgcgaaagcc
     1621 ccgtccgggg tcttgccgca atccagcagg cacaaggtgc gtcccgccgt caaccgctga
     1681 taggcgctgt ggcgggcatg atgaaacggc tggccgcgca catcgtcgcg cgccaagagc
     1741 ccggcgatca tgcgcggatc gccttccgcg ccgccgttga acagcgccag cgcgccatcg
     1801 gcatggcgga agaaacgcag catcggcgcc atgcggtcat ggacgttgcg caaagtgtgc
     1861 ggcggttcct cgcccgccgc gctgaggctt tccatcacca tgatgacatg gcgataggcc
     1921 gccagcagcg cctcgggcga gcggctgaca tggccgccat cgggtagtat ctggcgctcg
     1981 atttcctgtt ccaggcgcgc gagaccggca tggcggcgcc gggcgctgtc atccaggcag
     2041 aggccggaca gcgccagcac cgcggcggct tccagccgcg gcaagccgtc gggcgcctcg
     2101 ccgcaaatcc gttccagcat cttggactgc tcgcgcagcg acacgaacag ccgcgagcgc
     2161 cacatcattt cggaattcag gatcaccagc cgcccatggc tgaacagggc ggccagccgc
     2221 cgcgccatga tgtgcggcgc ccagaccggc tcgctatagc cgccatggcg cttgacccac
     2281 tggccgatca gattggtcgc cagcctgcgg gcattgtcgc cgccggcatt ggacaaggcg
     2341 ggcaaccagg caaagctgtg cagcgccgca tgccaggccg ggttgggcgg cggcagatcg
     2401 aacaccgaca cgccgtcggg cacgtcgaca tggatgccat agaaacgaaa gcgcccgcgc
     2461 aacagggagt cggcttcttc caatcggcgc ggggtcgcgt cccaaggatg aaagacgatg
     2521 tgatcggcca gcgggccctt gagcaggcgg cgatagaccc agttgcgccg ccaccacacc
     2581 cgcgccggcg tcgccacgcg gcgaaggccc gcccggatca gctcgggcag gagcggcacc
     2641 atctcgcccc cctgcaccgt caacctctta aagcggcaat attggcggca tattttgacg
     2701 gcccgccctg gaacaccgcg gtgcccgcca ccagcacggt ggccccggcg gcgatggcgc
     2761 gcttggcggt gtccggcgtg atgccgccat ccacttccaa tgcgatgtca cggccggttg
     2821 cgtcgatgcg cttgcgcgcg gcct
//
LOCUS       DATMDK010000097         5853 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1649254,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000097 DATMDK010000000
VERSION     DATMDK010000097.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 5853)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5853)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5853
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1649254"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(36..1697)
                     /locus_tag="VNN98_01920"
     CDS             complement(36..1697)
                     /locus_tag="VNN98_01920"
                     /inference="COORDINATES: protein motif:HMM:NF017050.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GMC family oxidoreductase"
                     /protein_id="HWM60873.1"
                     /translation="MPQHNKKPHREFEPDVVVVGSGAGGGMAAYVLTKAGVKVLILEA
                     GRDYDPLADSAMLKWNHEAPLRAAPTPDKDFGYYDATVGGGWSVPGEPYTSAPGSTFR
                     WWRARMLGGRTNHWGRHVPRFGPYDFKPYTRDGLGMDWPLSYQDMASYYDRTEKLIGV
                     IGTNSGLENHPDSSPGVLLPSPKPRATELMIQAAANDLGIPCVPSRYAVLSRAIDHPH
                     APRQACFNASSCGRGCGIGAAFQSTTSLLPMAMGTGKLRITTNATVSLVVTDERGRAK
                     GVEYFDKDGASHVVRARVVVLAASACDTAKILLNSRDGGLANSSGEVGRNLMDTTGTN
                     IAGHIPALENRPRYNEDGMDVAHLYIPFWLYKEQAAGKLDFPRGYHYEIGGRFGMPGA
                     GSPLGGVEDGYGLSLKEDARRYYGAQLSFTVRGEMIPNTDSFCELDPDVKDKYGMPVL
                     RFHWKWSQHEIRQIAHGIKSARDMIHRLGGTVTTPDLPPERAISDGGFIIHELGTTRM
                     GDRADNSVTDSFGKSWDVDNLVIADGSVFTSNAHKNPTLTIMALA"
     gene            complement(1962..2819)
                     /locus_tag="VNN98_01925"
     CDS             complement(1962..2819)
                     /locus_tag="VNN98_01925"
                     /inference="COORDINATES: protein motif:HMM:NF012955.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acyl homoserine lactonase family protein"
                     /protein_id="HWM60874.1"
                     /translation="MALRPVAVFLAVMALCVAATAQPVPGLPPLPKLTGVRLYVIDCG
                     TIISHQPERFGLTRDDVPDPDFSDPCFLVMHPKGILLFDTGLTDAQVGRPIYENKMGY
                     EGQLKTVTLKGELANIGVTAPMITYLAISHSHWDHVGNANDYAGSTWLARKAEYDVMF
                     GPNANALVRKSYAALATAKTQYIEGDHDVFGDGSVVLLSTPGHTPGHQSLYVKLARTG
                     GVVVSGDLYHYSAERSLNRVPPREQTLGTPASRKRIDDFLQRTHSQLWMGHAIDWYQS
                     AVKAPGWYD"
     gene            complement(2860..4230)
                     /locus_tag="VNN98_01930"
     CDS             complement(2860..4230)
                     /locus_tag="VNN98_01930"
                     /inference="COORDINATES: protein motif:HMM:NF024206.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ankyrin repeat domain-containing protein"
                     /protein_id="HWM60875.1"
                     /translation="MRKSLGLGFCLLCALPAFASAAEYRLVAAVKNDDHAAIKKLLAG
                     HANVNAPLPDKSSVLSWAVDRQDTESVSLLLAAGAKPNVVDIDGASPLTLACELGGAE
                     IVADLLKAGADAKAARADGIGALALCAGSSAPETLGLLIARGAKVDAADPTGQTALMW
                     AAAKGRTENVSFLIAHGANVNAVSQHSFTPLFFALRSKVPAASLALLDAGANSKSVLQ
                     DGTSVVAAALDNDNVPFATTVVSRGTDLTQRDAKGRQLLHVAAASGQAELVKVVLSKG
                     VDPNALSEPPPAPAPPPQPAQAAGGGKVAVADGTRPPPPSAVATPPLVFAAEAGSADA
                     MKALVDAGAKVSIKAQDGTTVALAAAGSGNLDAVKYALQLDPDLTAIGPGGKSIMHYA
                     IANKNPDLAIPVLQYLADKGAKLDVKNTKGDTPGDFINRGGQQDIRIFYIQLLKDHGI
                     VSDHDH"
     gene            complement(4253..5596)
                     /locus_tag="VNN98_01935"
     CDS             complement(4253..5596)
                     /locus_tag="VNN98_01935"
                     /inference="COORDINATES: protein motif:HMM:NF019222.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1552 domain-containing protein"
                     /protein_id="HWM60876.1"
                     /translation="MMITRKPMGRRTMLHGMGTAMALPLLEAMSPSAKAAEEAAAARK
                     RLQVIYTPNGMMMQNWTPAQTGADFAMSPILKPLEPYRGKLTVFTGLSHVQAEALGDG
                     AGDHGRCCGGYLTGTHVKKTEGADITAGVSMDQVVAKQFGDQTQIPSLEIGLEPPSLV
                     GSCDSGYSCAYTNTLSWASASTPLPVTINPREVFERLFGDGDSLDARSRLAQLKRQAS
                     ILDFVAQDAKRLSHTMGASDKKKLDEYLTSVRDIEKRIQKVERGGTEATALPAYSRPS
                     GVPDGFEDYAHMMIDLQVLAMQADLTRVSSFMIGREVSGRSYPEIGVPDAHHPLSHHG
                     NDAEKIAKLTRINTLHMEQVAYYLKRMSETKEGEGSLLDHTLVLAGASLADPNRHDHR
                     ALPVIVMGGLIKGNRHVEVAKDTPMTNMMLSLMDTLGVHADSLGDSTGRLAEFAA"
     gene            complement(5593..>5853)
                     /locus_tag="VNN98_01940"
     CDS             complement(5593..>5853)
                     /locus_tag="VNN98_01940"
                     /inference="COORDINATES: protein motif:HMM:NF019253.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1585 domain-containing protein"
                     /protein_id="HWM60877.1"
                     /translation="AVLPDGTKFDGPKGLQDILLSRKDQFIEALTERLMTYALARGVE
                     SYDMPAVRQVRYQAAQDDYRMQSIILGIVQSVPFSMRRTPQT"
BASE COUNT         1021 a         1862 c         1843 g         1127 t
ORIGIN      
        1 ttccgcaggc gcgcggccaa atgatccatg ctgcgctagg ccagcgccat gatggtcaag
       61 gttggattct tgtgcgcatt ggaggtgaac acgctgccat cggcgatgac cagattgtcg
      121 acgtcccagc tcttgccgaa actgtcggtg acagaattat cggccctgtc tcccatgcgg
      181 gtggtgccca actcgtggat aatgaaaccg ccatcggaga tcgccctctc cggcggaaga
      241 tcgggcgtcg tgaccgtacc gcccaggcga tgaatcatgt ccctggcgct cttgatgcca
      301 tgcgcgatct ggcgaatttc atgttgcgac catttccagt ggaagcgcag caccggcatg
      361 ccgtatttgt ccttcacgtc gggatcgagt tcgcagaaag aatccgtatt ggggatcatc
      421 tcgccgcgta cggtgaagga gagctgcgcg ccataatagc gccgcgcatc ttctttcagg
      481 gagaggccgt aaccgtcctc cacgccgcca agcggagagc cggcgcccgg catgccgaag
      541 cgtccgccga tctcatagtg atagccgcgc ggaaaatcga gcttgcccgc cgcctgctct
      601 ttatagagcc agaaggggat atagagatgc gccacatcca tgccgtcttc attgtagcgc
      661 gggcggtttt ccagggcggg aatatggccg gcgatattgg tgccggtggt gtccatcaga
      721 ttgcgcccca cctcgccgct ggaattggcg agaccgccgt cccgcgaatt gagcaggatc
      781 ttggcggtat cgcaggcgct ggccgccagc accaccacgc gggcgcgcac aacatggctg
      841 gcgccgtcct tatcgaaata ctccacgcct ttcgccctgc cgcgttcgtc ggtgaccacg
      901 aggctgaccg tggcattggt ggtgatgcgc aacttgcccg tgcccatcgc catgggcagc
      961 agagaggtcg tgctttggaa ggccgcgccg atgccgcagc cgcgcccgca ggacgatgcg
     1021 ttgaaacaag cctgccttgg cgcatgggga tggtcgatgg cgcgcgacag cacggcatag
     1081 cgtgagggaa cgcagggaat gcccagatcg ttcgccgccg cctggatcat cagctcggtg
     1141 gcgcgcggct tgggcgacgg cagcaacacg cccggcgaag agtcgggatg gttttccagc
     1201 ccgctgttgg tgccgataac accgatcagc ttttctgtgc ggtcgtaata agacgccatg
     1261 tcctggtaag acagcggcca gtccatcccc aacccatcgc gggtatacgg cttgaagtcg
     1321 taagggccga agcgcggtac atgccggccc caatgattgg tgcgcccgcc cagcatgcgc
     1381 gcgcgccacc agcggaaggt cgaacccggc gcgctggtat agggctctcc cggcacgctc
     1441 cagccgccgc ccacggtggc gtcgtaataa ccgaagtctt tgtccggggt cggcgcggct
     1501 cgcagcggcg cctcatggtt ccatttcagc atggcgctgt cggccagcgg atcgtaatcg
     1561 cggcccgctt ccaggatcag caccttcacc ccggctttgg tcaggacata agcggccata
     1621 ccgccgccgg cgcccgatcc gacgaccaca acatcgggct cgaactcccg gtgcggtttt
     1681 ttgttgtgct gcggcatgcg gcctgacgtt ttttgaatcg gcgacgggga cggtattgga
     1741 tcgcttcggg gtgatccaga gcccggctca gaccgccgaa aacccgcccc agcgaacaga
     1801 ttttatgctt atatatcaat tacttatata ttatggtgac accatgaagt ttcttttggt
     1861 gactttggat cgatcgaaga tctttttcca ttcctgcgat cggcgaagcg ctgcgccagc
     1921 ggggccacac ggtcgtcatc gcctccaaca ggcccggcgg cctagtcgta ccagccgggc
     1981 gccttcaccg cgctctggta ccagtcgatg gcgtggccca tccatagctg tgaatgggtg
     2041 cgctgcagga agtcgtcgat ccttttgcgc gatgctggcg ttccaagagt ctgttcgcgc
     2101 ggcggcacac ggttcaagct tcgttcggcg ctgtagtgat agagatcgcc cgagaccacc
     2161 acgccgccgg tgcgcgccag cttcacatag agcgactgat gacccggggt gtggcctggc
     2221 gtggacagca gcaccacgct gccgtcgccg aatacgtcat ggtcgccttc gatatattgg
     2281 gttttcgccg ttgccagcgc ggcgtagctt ttgcgcacca gggcattggc gttcggcccg
     2341 aacatgacat catattctgc cttgcgcgcc aaccaggtcg agccggcata gtcgttggcg
     2401 ttgccgacat gatcccaatg ggaatgggaa atggccagat acgtgatcat cggagcggta
     2461 acgccgatgt tcgccagctc acccttcagg gtcacggtct tgagctgacc ttcgtaaccc
     2521 atcttgttct cataaatcgg gcggccgacc tgcgcatcgg tcagcccggt gtcgaacagc
     2581 agaattccct tggggtgcat caccagaaaa cagggatcgg aaaaatcggg gtccgggacg
     2641 tcgtcgcggg tgaggccgaa ccgctccggc tgatgggaaa tgatggtacc gcaatcgatc
     2701 acatagagcc gcacacccgt cagcttgggc agcggcggca ggcccggtac gggttgggcc
     2761 gttgccgcca cgcaaagcgc catcacagcc agaaaaacgg caaccggacg cagagccatg
     2821 gcgtgtcgcc cagtgtgggt ccgtaagtgt gggtccgtat cagtggtcgt ggtcgctcac
     2881 gatgccgtga tccttcagca gctggatata gaagatgcga atatcctgct gcccgccccg
     2941 gttgatgaaa tcgccgggcg tatcgccctt tgtgttcttg acgtccagct tggcgccctt
     3001 gtccgcgaga tactggagca cggggatcgc caggtcggga ttcttgttgg cgatggcgta
     3061 atgcatgatg ctcttgccgc caggaccgat cgccgtcagg tcgggatcca gctgcagcgc
     3121 gtatttcacg gcgtccaggt ttccgctgcc cgcggctgcc agcgccacgg tggtgccgtc
     3181 ctgcgccttg atgctcacct tggcaccggc atccaccagc gccttcatcg catccgccga
     3241 gcccgcctcg gccgcgaaca ccaagggcgg cgtggcgaca gcggacggcg gcggcggcct
     3301 ggtgccatcg gcaacggcca ccttgccgcc acctgccgct tgggccggtt gcggcggggg
     3361 cgccggcgcc ggcggcggct cggacaaagc attggggtcc acacctttgg acagcaccac
     3421 cttgaccaat tccgcctgac cactggcggc ggcgacatgc agcagctgcc ggcccttggc
     3481 gtcgcgttgc gtcagatcgg taccgcgcga taccacggtc gtggcgaagg gcacattgtc
     3541 gttgtccaac gccgccgcca ccaccgaggt cccgtcctgc agcacgctct tactgttggc
     3601 gcccgcatcc agcagcgcca gggacgcggc cggcaccttg ctgcgcagcg cgaagaacag
     3661 cggtgtgaag ctatgctgcg aaaccgcatt cacattggcg ccgtgcgcga tcaggaagga
     3721 gacattctca gttcgcccct tggccgccgc ccacatcagg gcggtctggc ctgtcgggtc
     3781 ggccgcgtcc accttggcgc ccctggcgat cagcagcccc agcgtttccg gcgcggaact
     3841 gcccgcacac agcgccaagg cgccaatccc gtccgcgcgg gccgccttcg catcggcacc
     3901 ggccttcagc aggtcggcga caatctccgc accgcccaat tcgcaggcca gggtcaaagg
     3961 cgaagcgccg tcgatatcga cgacattggg cttggcgccc gcagccagga gcaggctcac
     4021 cgactccgta tcctggcggt ccaccgccca ggacagtacg gaggatttgt cgggcagcgg
     4081 cgcgttcaca ttggcgtggc cggccagcag cttcttgatg gccgcgtgat catcgttctt
     4141 gaccgccgca accagccggt attccgcggc gctggcaaaa gccggcaagg cgcacagaag
     4201 acaaaaaccg agtcccagtg attttctcat agccccaaat ttccgcccgc gatcaagcgg
     4261 caaattccgc aagacggccg gtcgagtcgc ccaggctgtc cgcgtgcacg cccagcgtat
     4321 ccatcagtga caacatcatg ttggtcatgg gcgtatcctt ggccacttcc acatgacgat
     4381 tgcccttgat caacccgccc atcacgatca ccggcagagc gcgatggtcg tggcggttgg
     4441 gatcggccag gctggcgccg gccaggacca gggtatgatc cagcagactg ccctcgcctt
     4501 ccttggtttc gctcatccgc ttgaggtaat aggccacctg ctccatgtgc agggtgttga
     4561 tcctggtcag cttggcgatc ttttccgcat cattgccgtg atggctgagg ggatggtgcg
     4621 cgtcgggcac gccgatttcc ggataggagc gcccgctgac ttcgcggccg atcatgaagc
     4681 tggaaacccg ggtcaggtcg gcctgcatgg ccaggacctg caggtcgatc atcatatggg
     4741 cataatcttc aaaaccgtcc ggcacgccgg acgggcgcga ataggccggc agcgcggtcg
     4801 cctcggtgcc gccccgctcg accttttgga tgcgcttttc gatatcgcgc accgatgtca
     4861 gatattcgtc cagcttcttc ttgtcgctgg cgcccatcgt gtgcgacagg cgcttggcgt
     4921 cctgcgccac gaaatccagg atgctggctt ggcgcttcaa ctgcgccaac cggctcctgg
     4981 cgtccaggct gtcgccgtcg ccgaacaggc gctcgaagac ttcgcgcgga ttgatggtga
     5041 ccggcagcgg cgtggaggcg cttgcccatg acagggtgtt ggtataggcg cagctgtagc
     5101 cggaatcgca gcttcccacc aggctgggag gctccaggcc tatttccagc gagggtatct
     5161 gcgtctggtc gccgaactgc ttggccacca cctggtccat cgacacgccg gcggtaatgt
     5221 cggcgccttc ggttttcttg acgtgggtac cggtcagata accaccgcag cagcgtccat
     5281 gatcgccggc gccgtcgccc agggcttcgg cctggacatg cgacaggccg gtaaagaccg
     5341 tgagcttgcc ccgatagggc tccagcggct tgagaatggg agacatggca aaatccgccc
     5401 ccgtctgggc cggggtccag ttctgcatca tcatgccgtt gggcgtgtag atgacctgca
     5461 gccgcttgcg cgcggcggcg gcctcctccg cggccttggc gctggggctc atagcttcca
     5521 gcagcggcaa cgccatcgcg gtgcccatgc cgtgcagcat ggtgcggcgg cccattggct
     5581 tgcgtgtgat catcatgttt gcggagtcct tctcatggaa aaaggcacac tctgaacgat
     5641 gccgagaatg atggattgca tacggtagtc gtcttgtgcc gcctggtagc gcacctggcg
     5701 caccgccggc atgtcatagg attccacccc gcgcgccagg gcataggtca tcagccgctc
     5761 ggtcagggct tcgatgaact ggtccttgcg gctgagcagg atgtcctgca accccttggg
     5821 gccgtcgaac ttcgtcccgt caggcagcac ggc
//
LOCUS       DATMDK010000098         3434 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_960472,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000098 DATMDK010000000
VERSION     DATMDK010000098.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3434)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3434)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3434
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_960472"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(64..1050)
                     /locus_tag="VNN98_01945"
     CDS             complement(64..1050)
                     /locus_tag="VNN98_01945"
                     /inference="COORDINATES: protein motif:HMM:NF016107.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase"
                     /protein_id="HWM60878.1"
                     /translation="MLQEILTGQARSFMLLAWAVALFVYFLPSVLAFRRGHRHFFVIL
                     VLNVLLSPVQGTLLHFLAPSLLVIDPANAAGTMLAAVLANLGLGWILLLVWSLLPGAP
                     DPRLLKAQETKYYDAITALPLILWFAYGAFQLRAVLAHHAILIANGTATLFVWVQFIS
                     LSMAALFDLLLIYLLLVRDKPVAKSRGVLPRIFGVVGTFMGVGILQLKVAPLSLPMQI
                     LAAALIGIGSLGSLLVLYRLGKSFSIMPEARKLVTGGPYAYARHPLYTVEMVTIVGTA
                     LQFAAPWSWLIALVVVTLLWIRSHFEEQVLAEAYPEYAVYRTKTKRFIPGVI"
     gene            complement(1083..1826)
                     /locus_tag="VNN98_01950"
     CDS             complement(1083..1826)
                     /locus_tag="VNN98_01950"
                     /EC_number="2.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HWM60879.1"
                     /translation="MAYYERYRLAYPDRLIGRVAGLLGLKPGDAVLDLGCGTGMLGIA
                     FARLGMAVTAMDPESDMLAAAGAAAKAAGVTLSLKLGGSHDLRPELRPFRLVAMGRAF
                     HWMDRAATLAMLDCIVTQDGGVALFHDAHPPVEENGWFKLLHAIQDKYGRAAAERHGG
                     HRRYEPFLFASAFTQLDGLSVTIRAGLTVEDIVGRAFSMSNSSPQKLGARQEEFTASL
                     SAALRELSPDGKFTEVAELVAVLARRPNA"
     gene            1935..2639
                     /locus_tag="VNN98_01955"
     CDS             1935..2639
                     /locus_tag="VNN98_01955"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HWM60880.1"
                     /translation="MANIALVDDDKNILASVSMLLEQEGYHVRTFSDGAAALTALTTS
                     PPDLAILDIKMPRMDGLELLRRLRQAQDLPVIFLTSKDEEIDELMGLNAGADDYIRKP
                     FSQRLLLERVRAVLRRAEGKGAAAPANGEAAKKEALTRGKLALDPQRHECTWDGKPVR
                     LTVTEFLILQALAQRPGFVKSRDSLMDAAYDDQVYVDDRTIDSHIKRLRKKFKAVADD
                     FDAIETLYGVGYRYRE"
     gene            2639..>3434
                     /locus_tag="VNN98_01960"
     CDS             2639..>3434
                     /locus_tag="VNN98_01960"
                     /inference="COORDINATES: protein motif:HMM:NF025131.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stimulus-sensing domain-containing protein"
                     /protein_id="HWM60881.1"
                     /translation="MPHFSALTWRILGFNALALLILIGGVILVQVSSRGLVEERLNGI
                     HQQAAIVAGTIAQYAIDPNNHTLKVDDAELLLPQLIAPTRLRGRLYLPGGQLAVDTRF
                     FLSRGVVRVAQLPSLDTVSQVKEWLKRLYDGIMGVRPFARLDPYYEAGDDGRVYHEVE
                     SALTGVAASAERVDDQNRLVLSVAVPVQGVAAVYGVLLVSTEGGDIDDILRQERATLI
                     EVFAVAFLVMLFSSLYLSGTIAEPVKRLAAAADRVRSGAGGREEIPN"
BASE COUNT          692 a         1114 c         1051 g          577 t
ORIGIN      
        1 cgcgcccgtc cttcggaccc cccaaggggg gagagggaat ggagcgggcc atgacgagtt
       61 gggctaaatc acccccggaa taaaccgctt ggtctttgtc ctatacaccg catattccgg
      121 ataggcctcc gccagcacct gttcttcaaa gtggctgcgg atccacagca aggtcaccac
      181 caccagcgcg atcagccagg accaaggcgc ggcgaattgc agcgccgtac ccacaatggt
      241 gaccatctcc acggtataaa gcggatggcg ggcataggcg taaggcccgc cggtcaccag
      301 cttgcgcgcc tcgggcatga tcgagaaact cttgcccagc cggtacagca ccagcagcga
      361 gcccaggctg ccgatgccga tcagcgccgc cgccaatatc tgcatcggca ggctcagcgg
      421 tgccaccttc aattgcagaa ttcccactcc catgaaagtg ccgaccacgc caaaaatgcg
      481 cggcagcaca ccgcgggact tggcgacggg cttgtcgcgc accagcagca gatagatgag
      541 cagcaggtcg aacaaagccg ccatcgacag cgagataaat tgcacccaga cgaacagggt
      601 cgcggtgccg ttcgcgatca gtatcgcgtg atgcgccaga acggcgcgca gctggaacgc
      661 gccataagcg aaccacagga tcagcggcaa ggcggtgatg gcgtcgtaat atttggtctc
      721 ctgcgccttg agcaggcgcg gatcgggcgc gccgggaagc agcgaccata ccagcagcag
      781 tatccatcca aggcccagat tggcgaggac cgccgccagc atggtgccgg cggcattggc
      841 ggggtcgatc accagcaggc tgggcgctag aaaatgcagc agcgttccct gaaccggcga
      901 caacaaaaca ttcagcacca ggatgacaaa gaaatgacga tgtccccggc gaaaggccag
      961 caccgaaggc agaaaataga cgaacagcgc caccgcccac gccagcagca tgaagctcct
     1021 ggcctggccc gtcaaaattt cctgcaacat gctcccccca attgacttta cacttgcgct
     1081 ttttatgcgt tgggccgccg cgccaatacc gccaccagct ccgcgacctc ggtgaacttc
     1141 ccatccggcg acaattcccg caaggccgcc gacagggacg cggtaaattc ttcctgtcgc
     1201 gcgcccagtt tttgcggcga ggagttggac atggaaaagg cgcggccgac aatatcctcc
     1261 accgtcagac cggcacggat ggtgaccgac aagccgtcca gctgggtaaa ggcggatgcg
     1321 aacaggaacg gttcatagcg gcggtgaccg ccgtgccgct cggccgcggc gcggccatat
     1381 ttgtcctgaa tagcatgcag cagcttgaac cagccattct cctccaccgg cggatgggcg
     1441 tcatgaaaca gcgccacgcc gccgtcctgt gtcacgatgc agtccagcat ggcgagcgtg
     1501 gcggcacgat ccatccagtg aaaggcgcgg cccatcgcca ccagccggaa gggcctcagc
     1561 tccggcctga gatcatgaga gccgcccagc ttcaagctca gcgtcacgcc ggccgccttg
     1621 gcggcggccc cagcggcggc cagcatgtcc gactccggat ccatcgcggt cacggccatg
     1681 cccagccgcg cgaaagctat ccccagcatt cctgtgccgc agcccagatc gagcaccgca
     1741 tcgcccggtt tgaggcccaa cagccccgcc acccgcccga tcagccggtc cggataagcc
     1801 agccggtagc gctcataata ggccacggtg ctctgaaagg gacgcgggtc aggggacagc
     1861 gggatggaac cttttggact ttgctttgtt gatcatgggc ttatactagc caagccttat
     1921 tttgaacgga ctcgatggcg aatattgcgc tggtagatga cgataaaaac atcctcgcct
     1981 ccgtcagcat gctgctggag caggaaggct atcatgtccg caccttctcc gatggcgccg
     2041 cggcgctgac ggcgctgacc accagcccgc ccgacctcgc catcctggac atcaagatgc
     2101 cgcgcatgga cggtttggaa ctgctgcgcc gcctgcgcca ggcccaggat cttcccgtga
     2161 tcttcctcac cagcaaggac gaggagatcg acgagctgat gggactcaat gccggggccg
     2221 acgattatat ccgcaagccc ttctcccagc gcctgctgct ggaacgtgtg cgcgccgtgc
     2281 tgcgccgcgc cgaaggcaaa ggcgcagctg cgcccgccaa tggcgaggcc gccaagaagg
     2341 aagccttgac gcgcggcaag ctggcgctgg acccccagcg gcatgaatgc acctgggacg
     2401 gcaagccggt gcggctgacc gtcaccgaat tcctgatcct gcaggcgctg gcccagcgcc
     2461 ccggcttcgt caaaagccgc gacagcctga tggacgccgc ctatgacgat caggtctatg
     2521 tcgatgaccg caccatcgac agccacatca agcggctgcg caagaagttc aaggccgtgg
     2581 ccgacgattt cgacgccatc gagacgctgt acggcgtcgg ttatcgctac agagaatagt
     2641 gccccacttt tccgccctca cctggcgcat cctgggcttc aatgcgctgg cgctgctgat
     2701 cctgatcggc ggcgtcatcc tggtgcaggt ctcaagccgc ggcctggtcg aggagcggct
     2761 caacggcatc catcagcagg cagccattgt ggcgggcact atcgcccaat atgccatcga
     2821 tcccaataat cataccttga aggtggatga tgccgagttg ctgctgcccc agttgattgc
     2881 gccaacccgc ctgcgcggac ggctttatct gccaggcgga cagcttgccg tcgacacccg
     2941 cttctttctg tcacgcggcg tggtgcgggt ggcgcaactg ccgtcgctgg acaccgtcag
     3001 tcaggtgaag gaatggctca agcgccttta tgacggcata atgggggtca ggccctttgc
     3061 ccgactggat ccttattacg aggctggcga tgacggccgt gtttatcacg aagtggagag
     3121 cgcgctgacc ggcgtcgcag ccagcgccga acgggtggac gaccagaacc ggctggttct
     3181 gtcggtggca gttcctgtcc aaggcgtggc ggcggtctat ggcgtgctgc tggtttccac
     3241 cgaaggcggc gacatcgacg acattctgcg ccaggagcgc gccaccttga tcgaagtctt
     3301 cgccgtggcc tttctggtga tgctgttctc ctcgctgtat ctgtcgggca ccatcgccga
     3361 gccggtgaag cggctggcgg cggcggccga ccgggtgcgc tcgggtgcgg gcgggcgcga
     3421 ggagattccc aatt
//
LOCUS       DATMDK010000099         4969 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1194293,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000099 DATMDK010000000
VERSION     DATMDK010000099.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 4969)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4969)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4969
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1194293"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..769)
                     /locus_tag="VNN98_01965"
     CDS             complement(<1..769)
                     /locus_tag="VNN98_01965"
                     /inference="COORDINATES: protein motif:HMM:NF024586.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain-containing protein"
                     /protein_id="HWM60882.1"
                     /translation="MRPIRGQGRRPGTGGRRWRGFLLAAAPCALPLPAWAGDPQTAAL
                     AFQNGNVVVLSALACGGVALAIAAALWALAEQRAARRLRRSLRSVGAKTKAALGEREA
                     LLGAGREALVVWGRDGSGPFSYGGGDDMLQSCLKGADALALSSALDGLSDRGAAFQLS
                     VHDSHGRLLLARGRAVGGMAAVWMEEPTITAVEQGADYRAILDALPIPVWLRDKALTL
                     TWANHAFLKGAGAANLDTARRDQLALDKSERELAASAR"
     gene            complement(1043..2464)
                     /gene="ahcY"
                     /locus_tag="VNN98_01970"
     CDS             complement(1043..2464)
                     /gene="ahcY"
                     /locus_tag="VNN98_01970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019457169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004013 - adenosylhomocysteinase activity
                     [Evidence IEA];
                     GO_process: GO:0006730 - one-carbon metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylhomocysteinase"
                     /protein_id="HWM60883.1"
                     /translation="MSAAPANPFSDYIVKDIALAEWGRKELTMAEIEMPGLMAIRAEY
                     GAKQPLKGARIAGSLHMTIQTGVLIETLKALGADIRWVSCNIYSTQDHAAAAIAAAGI
                     PVFAIKGESLKDYWDYTAKLFEWHGGGYPNMILDDGGDATMLVHLGLRAEKGDTAFLD
                     KPENEEEEVFYALIKRLLKEKPKGWFAEVAAAIKGVSEETTTGVHRLYLMEKDGKLLF
                     PAINVNDSVTKSKFDNLYGCRESLVDGIRRGTDVMMSGKVAMVAGFGDVGKGSAASLR
                     QAGCRVLVSEVDPICALQAAMEGYEVVTMETAAPRADIFVTATGNVDVITVEHMRAMK
                     DRAIVCNIGHFDSEIQVGATKNFKWHNVKPQVDEIEFPDGKRIILLSEGRLVNLGNAM
                     GHPSFVMSASFTNQTLAQIELWNNTGKYEKKVYTLPKLLDEKVARLHLAKIGVQLTEL
                     STKQSDYITIPKSGPYKPDTYRY"
     gene            complement(2662..3576)
                     /locus_tag="VNN98_01975"
     CDS             complement(2662..3576)
                     /locus_tag="VNN98_01975"
                     /inference="COORDINATES: protein motif:HMM:NF014066.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TraB/GumN family protein"
                     /protein_id="HWM60884.1"
                     /translation="MSSRRLLALLFTVFLSAPAAAQISVQPAIAPGIGSVRAYPSLWH
                     IKGEQGEVYLLGAVHVLPPEVRWRTQAISRVLSRSDVFVFEVPEDAAAMAELHTLIQA
                     QGFLPPDQSLRAQLHPAALPDYDAAVTASGLPPPTLERERPWLAGIQLMFAQMAKLKY
                     AAGNGVDSILMADAVRDHRQTRYFETIADQFTLLAPDDKNLEVQEFEAGLKDLRDLSA
                     GIQPMIHAWSVGDQAKLDQLINGDLDEFPQARKLLLDDRNARWVPKIEAMLKEKHVFF
                     ITVGAGHLTGAKGVPALLRKAGYAVEGP"
     gene            complement(3659..3934)
                     /locus_tag="VNN98_01980"
     CDS             complement(3659..3934)
                     /locus_tag="VNN98_01980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017978864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009401 - phosphoenolpyruvate-dependent
                     sugar phosphotransferase system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HPr family phosphocarrier protein"
                     /protein_id="HWM60885.1"
                     /translation="MSAKLSAKVIIPNKRGLHARASAKIVEASARFKSEIHVVKDGIA
                     VNGRSIMGLMMLAASIGSEVEITTEGTDAEEAMKAILALVEAKFGEE"
     gene            complement(3935..4330)
                     /locus_tag="VNN98_01985"
     CDS             complement(3935..4330)
                     /locus_tag="VNN98_01985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010163554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:1902495 - transmembrane transporter
                     complex [Evidence IEA];
                     GO_function: GO:0016301 - kinase activity [Evidence IEA];
                     GO_process: GO:0008643 - carbohydrate transport [Evidence
                     IEA];
                     GO_process: GO:0009401 - phosphoenolpyruvate-dependent
                     sugar phosphotransferase system [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIA"
                     /protein_id="HWM60886.1"
                     /translation="MIGIVLVTHGRLAQEFVSAMEHMVGPQTHLRAVCIGPEDDIERR
                     QREIAAAAKSVDVGSGVIIATDMFGGTPCNLALTLLERGKIEVLAGANLPSLIKLIDI
                     RTKLPLDQAVKEAIEAGRKYMRAGSADLA"
     gene            complement(4384..4845)
                     /locus_tag="VNN98_01990"
     CDS             complement(4384..4845)
                     /locus_tag="VNN98_01990"
                     /inference="COORDINATES: protein motif:HMM:NF019118.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM60887.1"
                     /translation="MSEANIHASCVALGGKGVLLLGPSGAGKSDLALRLIDQGAKLVA
                     DDRTILYIAKGVLHARAPASIKGLLEIRGLGIVKLPVRTNVKIALVVRLGREGARLPS
                     PALYRPPAPLKPTHLPPQIALDSRFASTPAKVRAALAAFSQDLFGDTFITK"
BASE COUNT          878 a         1560 c         1575 g          956 t
ORIGIN      
        1 cgcgggcgct ggccgccagt tcgcgctcgc ttttgtccag cgccagctgg tcgcgccggg
       61 cggtgtccag attggcggcg ccggcgccct tgaggaaagc atgattggcc caagtcaggg
      121 tcagggcctt gtcgcgcagc catacgggaa tcggcagcgc atccaggatc gcacgatagt
      181 cggcgccttg ttccaccgcg gtgatggtgg gttcttccat ccacaccgcc gccatgccgc
      241 ccacggcgcg tccgcgcgcc aacagcagcc ggccatggct gtcatgtact gaaagctgga
      301 aggccgcgcc gcgatccgac aagccgtcca gcgcgctgga cagcgccagc gcatcggcgc
      361 ccttcaggca ggactgcagc atgtcgtcgc cgccgccata ggagaaagga ccggagccgt
      421 cgcggcccca caccaccagc gcctcgcgcc ccgcgccgag cagcgcctcg cgttcgccca
      481 gcgccgcctt ggtcttggcg cccacgctgc gcaatgagcg gcgcaagcgg cgcgcggcac
      541 gctgctccgc cagcgcccac agggctgccg ctatcgccag cgccacgccg ccgcaggcca
      601 gcgccgacag caccacgaca ttgccgttct ggaaggccag ggcggccgtt tgcggatcgc
      661 cggcccaggc gggcaggggc agggcgcaag gcgcggcggc cagcaggaaa ccccgccacc
      721 gccgtccccc ggtccccggc cttctgccct gtccccttat gggacgcatg ccgtcagccc
      781 ccgttaacct gtcgcctatt cagcgaatca ctttggaatc aacaagatag cttcggaggc
      841 cgagtccgac taggtattgt ggttaataaa atatgaaaaa cgaaatgcgg ctcacggccc
      901 cagatttaga ggtctgtgga taatctgcga gtaggatcaa ggcgttaatt aattgccgcg
      961 ctgcggcgag gtgcgccgag cccgcggtca cgaaaaaggg cgcgcctgtt aggacgcgcc
     1021 cttcgtcgcc gccgagtggc ggttagtagc ggtaggtatc cggcttgtac ggacccgact
     1081 tggggatggt gatgtagtcg gactgcttgg tcgacagctc ggtcagctgc acgccgatct
     1141 tggccagatg caggcgggcg accttctcgt ccagcagctt gggcagggta tagaccttct
     1201 tctcatactt gccggtgttg ttccacaatt cgatctgggc cagcgtctgg ttggtgaagc
     1261 tggcgctcat cacgaaagac ggatggccca tggcgttgcc cagattcacc aggcggcctt
     1321 cggacagcag gatgatgcgc ttgccgtcgg ggaattcgat ttcgtccacc tgcggcttca
     1381 cattgtgcca cttgaaattc ttggtggcgc cgacctgaat ttcgctgtcg aaatggccga
     1441 tgttgcagac gatggcgcgg tccttcatgg cccgcatatg ctccaccgtg atcacatcga
     1501 cattgccggt ggcggtgacg aagatgtcgg cgcgcggggc ggccgtctcc atcgttacca
     1561 cttcatagcc ttccatggcg gcctgcaggg cgcagatcgg gtccacttcc gacaccagca
     1621 cgcggcagcc ggcctggcgc agcgaagcgg ccgagccttt gccgacatcg ccgaaaccgg
     1681 cgaccatggc gaccttgccc gacatcatca cgtcagtgcc gcggcggatg ccgtccacca
     1741 gcgattcgcg gcagccatag agattgtcga acttcgactt ggtgacgctg tcgttcacat
     1801 tgatggcggg gaaaagcagc ttgccgtcct tttccatcag gtacaggcga tgcacgccgg
     1861 tggtggtctc ctccgacacg cccttgatgg cggcggcgac ttcggcgaac caacccttgg
     1921 gcttttcctt cagcagccgc ttgatcagcg cgtagaagac ttcctcttcc tcattctccg
     1981 gtttgtcgag gaaggcggtg tcaccctttt cggcgcgcag gcccagatgc accagcatgg
     2041 tggcgtcgcc gccgtcgtcc agaatcatgt tggggtagcc gccgccatgc cattcgaaca
     2101 gcttggcggt gtagtcccaa tagtccttca ggctctcgcc cttgatggcg aagaccggga
     2161 tgccggccgc ggcaatcgcg gcagccgcat gatcctgggt cgaatagatg ttgcacgaca
     2221 cccagcggat gtcggcgccc agcgccttca gggtttcgat cagcacgccg gtctggatgg
     2281 tcatgtgcag cgagccggcg atgcgcgcgc ccttcaaggg ttgcttggct ccatattcgg
     2341 cgcgtatggc catcaggccc ggcatctcga tttcggccat ggtcagctct ttgcggcccc
     2401 attcggcgag ggcgatgtcc ttgacgatat agtcgctgaa gggattggca ggggcggcgg
     2461 acatgaaggg attcctgtgg ttttcgggct gcctaatagc agccggccgg ggacagggca
     2521 agaaacatat aaagaaatct gcatatggtt agaaagggcg cggaaaggct gtgttttttt
     2581 acgggtccgg ccgcgcgccg actctacgct gacgctaatc ggcgcttggg gcgccttgat
     2641 ggccgcggct acgccgcgcc atcaaggccc ttcgaccgcg taacccgcct tgcgcagcag
     2701 cgcgggcacg cctttggcac cggtcaggtg gccggcgccc acggtaatga agaagacatg
     2761 cttttctttc agcatggctt cgatcttggg cacccagcgc gcattgcggt catccagcag
     2821 cagcttgcgg gcttgcggaa attcatcgag atcgccgttg atcaattgat ccagcttggc
     2881 ctgatcgccg acgctccagg cgtgaatcat gggctgtatc ccggcggaaa gatcgcgcag
     2941 atccttcagg ccagcctcga actcctgcac ttcgaggttt ttgtcgtcgg gggccagcaa
     3001 agtgaactga tcggcgatgg tttcgaaata gcgtgtctgt ctgtggtccc gcaccgcgtc
     3061 cgccatcagg atggaatcca cgccattgcc ggcggcatat ttcagcttgg ccatttgcgc
     3121 gaacatcagc tggatacccg ccagccaggg ccgttcgcgc tccagggtag ggggcggtag
     3181 tcccgaagcc gtcaccgccg catcatagtc gggcagcgca gcaggatgca gttgcgcccg
     3241 caggctctgg tctgggggca gaaagccttg cgcctggatc agggtgtgaa gctccgccat
     3301 cgccgccgcg tcttcgggca cctcgaagac aaacacgtcg ctgcgcgaca gcacccggct
     3361 gatggcttgt gtacgccagc gcacttcggg cggcagcaca tgcactgcgc cgagcagata
     3421 gacctcgcct tgctcgccct tgatatgcca cagcgaagga taagcccgga cgctgccaat
     3481 ccctggggca atcgctggct gcaccgagat ctgggcggcg gcgggggctg agaggaatac
     3541 tgtgaagagg agagcgagta agcgccgaga gctcatttta tccttcctgc cgcgcgcaaa
     3601 gtctacgctg tcgctacttt gcgcttggca agttcggtga agagtgatcg ctgtgcgatc
     3661 actcttcacc gaacttagcc tccaccagcg ccaatatcgc tttcatagcc tcttcggcgt
     3721 cggtcccttc ggtggtgatt tccacttccg aaccgatgga ggcggccagc atcatcaatc
     3781 ccatgatgga gcggccattg acggcgatgc cgtccttgac gacgtgaatt tcggacttga
     3841 agcgcgccga ggcttccaca atcttggcgc tggcgcgggc gtgcaagccg cgcttgttgg
     3901 gaatgatgac tttggccgag agctttgcgc tcatttaggc aagatccgcg ctgcccgcac
     3961 gcatgtattt gcggcccgcc tcgatggcct ctttcacggc ctggtccagc ggcagcttgg
     4021 tgcggatgtc gatcagcttg atcaggctgg gcaggttggc gcccgccagc acctcgatct
     4081 tgccgcgctc gagcaaggtc agcgccagat tgcagggcgt gccgccgaac atgtcggtgg
     4141 cgatgatgac gccgcttccc acatccaccg acttggcggc ggccgcgatt tcgcgctggc
     4201 ggcgttcgat atcgtcttcg ggcccgatac agacggcgcg cagatgagtc tgagggccca
     4261 ccatatgctc catcgcggaa acgaattcct gcgccaagcg gccatgcgta accagaacaa
     4321 taccaatcat gcggattccc taagcggcgg ggacagtagc aaaaacccct gccgtggaaa
     4381 ggcttatttg gtgataaaag tgtcgccaaa caagtcctgc gaaaatgccg caagtgcggc
     4441 gcgcaccttg gccggcgtgg aagcgaagcg ggaatccagc gcgatttgcg gcggcaagtg
     4501 ggtgggtttg agcggtgcgg gcgggcgata aagcgcagga ctgggcaagc gcgcgccttc
     4561 gcggcccagc cggacgacca gcgcgatttt cacgtttgtg cgcaccggca gcttgacgat
     4621 gcccagccca cgtatctcca gcaggccctt gatgctggcc ggcgccctgg catgcaacac
     4681 gcctttggct atgtacagga tggtgcggtc gtcggccacc agtttggcgc cctgatcaat
     4741 cagccgcagc gccaggtcgg attttcccgc gccgctgggt cccagcagca gcacgccttt
     4801 gccaccaagc gcgacgcagc tggcatggat gttcgcctca gacatggtgg tgcgccagcg
     4861 gcagttccac gatcagccgc gcgcctcttt cttcgcgatt ttcggcatag atgcgtccgc
     4921 ccgcgccttc gatgatctgg cgggcgatgg aaagtcccag cccggaatt
//
LOCUS       DATMDK010000100         4052 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_292687,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000100 DATMDK010000000
VERSION     DATMDK010000100.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 4052)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4052)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4052
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_292687"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..609)
                     /locus_tag="VNN98_01995"
     CDS             complement(<1..609)
                     /locus_tag="VNN98_01995"
                     /inference="COORDINATES: protein motif:HMM:NF013086.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HWM60888.1"
                     /translation="MTRVDNIVETDGALILGAGIAGLFTALKLAPMPSIVLAGTRPGL
                     SGSSAWAQGGIAASVAPGDSWQSHAHDTMVAGAGLCDPAIVDLVAQEAPARIEDLVGY
                     GAPFDRNGDGSLAVAREAAHSLPRIVHVKGDGAGAAISGTLAARANEAGCITLLEGFH
                     AVELALENGRVTGIFARSGIGAEARLILFRARAVILATGGLGA"
     gene            complement(614..1627)
                     /gene="nadA"
                     /locus_tag="VNN98_02000"
     CDS             complement(614..1627)
                     /gene="nadA"
                     /locus_tag="VNN98_02000"
                     /EC_number="2.5.1.72"
                     /inference="COORDINATES: protein motif:HMM:NF006879.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008987 - quinolinate synthetase A
                     activity [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0009435 - NAD biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="quinolinate synthase NadA"
                     /protein_id="HWM60889.1"
                     /translation="MGVELAYTDAVARATEGLYAKVAGFIPKMEWHAYAPVIAEINRL
                     KRAKGAVILAHNYMTPEIFHGVGDFVGDSLALAREAARTDAKIIVQAGVHFMAETSKI
                     LSPDKTVLIPSTKAGCSLAASITGADVRLLKQKYPGLPVVTYVNTSAEVKAESDICCT
                     SGNAVRVVEAIAREFGTDTVIMIPDKYLARNVAAKTGVKVITWEGACEVHERFTAQEI
                     RDYRTAHPGIVVLAHPECPPEVVAEADFAGSTAAMINYVGDHKPRRVVMITECSMSDN
                     VAVEYPDVDFVRPCNLCPHMKRITLDSILHSLQTMTTEVIVPAHIAARAKAPIDRMLA
                     VKA"
     gene            complement(1809..2798)
                     /locus_tag="VNN98_02005"
     CDS             complement(1809..2798)
                     /locus_tag="VNN98_02005"
                     /inference="COORDINATES: protein motif:HMM:NF040269.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM60890.1"
                     /translation="MSAKDLVSIGLSAAIVAVEGERPSVLVVAHDGTEDALPFGPFDP
                     EQQRTLESGLRKWVGEQTKFDLGYTEQLYTFGDKGRHTPAGGDKGRHLPASGSAGTRV
                     VSVGYLALTRQGKEAPETQWRGWYHYFPWEDWRDTKPAMIESTILPALKKFVKDAPNA
                     ESAELRRDRVNVCFGEGWDEERVLERYELLYEAGLVEEFYRDSGGKPAKGARPINGNL
                     GTPMLFDHRRILATAIARLRGKLKYRPVVFELMAPTFTLLELQRAVEALAGLRLHKQN
                     FRRLVAEQGLVEGTGKFAVAARGRPAELFRFRREVLRERPAPGVRLGGRRARL"
     gene            complement(2809..3327)
                     /locus_tag="VNN98_02010"
     CDS             complement(2809..3327)
                     /locus_tag="VNN98_02010"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM60891.1"
                     /translation="MPRLLVAPLSSLADALDAHAPSHLISLLSPEHMITTPAGFPAAK
                     HLRLGVNDIVDPAAGTDPPARRHIDALLDFSRAWDGRQPLLIHCWAGISRSMASAFTI
                     LCDRLGPDREIEIAHAMRQRAPHAQPNRLLVRHADEALGRQGKMIAAVNAMAPPLLVE
                     EGVTTAFPLVGL"
     gene            complement(3366..3926)
                     /locus_tag="VNN98_02015"
     CDS             complement(3366..3926)
                     /locus_tag="VNN98_02015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008035435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD family hydrolase"
                     /protein_id="HWM60892.1"
                     /translation="MLSGRRLDLLEPSPLDIEIADIAHGLARVARWNGQTKGAHAFSV
                     AQHSVLVERLVAELSPRLSREARLMALLHDAPEYVVGDLISPFKAAVGVNYKALEEKL
                     QAAIHLRFGLPAQIPAPLKTLLKRADHLSAYYEATQLAGFEEPEARRLFGTPPKGVKT
                     PRLVPLSTAEAQGLFLARFGRLCDLN"
BASE COUNT          712 a         1319 c         1309 g          712 t
ORIGIN      
        1 cgcccccagc ccgccggtgg ccaggatcac ggcccgggcg cggaacagga tcaaccgcgc
       61 ctccgcaccg atgccggagc gggcgaaaat gccagtgacc ctcccattct ccagcgccag
      121 ctccacggcg tgaaagcctt ccagcagggt gatgcaaccc gcctcattgg cgcgcgccgc
      181 cagggtgccg gaaatcgccg cgcccgcgcc gtcgcctttc acatgcacaa tgcggggcag
      241 ggaatgagca gcctcgcgcg ccacggccag cgagccgtcg ccattgcggt cgaacggtgc
      301 gccatagccc acaagatctt cgatgcgggc cggggcttcc tgcgccacca ggtcgacaat
      361 cgccggatcg cacaggcctg cgcccgccac catcgtgtca tgggcgtggg attgccaact
      421 gtcgccgggc gccacggacg ccgcgatgcc gccctgggcc caggcgctgg agcccgacag
      481 gccgggccgg gttcccgcca gcacgatgct gggcatgggc gccagcttca gggcggtaaa
      541 caagccggca atgcccgcgc ctaaaatcaa tgcgccgtca gtttcgacga tgttgtctac
      601 gcgtgtcatg atctcaggcc ttcaccgcca gcatgcggtc gatgggcgct ttcgcccgtg
      661 ccgcgatatg ggctggcacg atcacttcgg tggtcatggt ctgcagcgaa tgcagaatgc
      721 tgtcgagcgt gatgcgcttc atgtgcgggc atagattgca gggccgcacg aaatcgacat
      781 cgggatattc gaccgcgaca ttgtcactca tcgaacattc ggtgatcatc accacgcgcc
      841 tgggcttgtg gtcgccgaca taattgatca tggccgcggt cgagccggcg aagtcggctt
      901 ccgccaccac ttcgggcggg cattcgggat gggccagcac cacaatgccg ggatgggcgg
      961 tgcgatagtc gcgaatctcc tgcgccgtga agcgctcatg cacctcgcag gcgccttccc
     1021 aggtgatcac tttcacgccg gtcttggccg ccacgttgcg ggcgagatat ttgtccggga
     1081 tcatgatcac cgtgtcggtg ccgaattccc gggcgatggc ttccaccacc cgcacggcat
     1141 tgccgctggt gcagcagata tcgctttccg ccttcacttc ggcgctagtg ttcacatagg
     1201 tcactaccgg caggccggga tatttctgct tgagcagccg cacatcggcg ccggtgatgg
     1261 aggcggccag ggaacagccg gccttggtgc tggggatcag cacggtcttg tccggcgaca
     1321 ggatcttgga ggtctcggcc atgaagtgca ccccggcctg gacgatgatc ttggcgtccg
     1381 tgcgcgccgc ctcgcgggca agggcgaggc tgtcgcccac gaagtcgcct acgccgtgga
     1441 agatttccgg tgtcatgtaa ttgtgcgcca ggatgacggc gcccttggca cgcttaagac
     1501 ggttgatctc ggcgatcacc ggggcatagg cgtgccactc catcttgggg atgaagcccg
     1561 caaccttggc gtagaggccc tcggtggcgc gcgccacggc gtcggtatag gccagctcaa
     1621 cacccatttg agtcctccgt caccaaataa tactcatttc gagtatatat gtggggcaaa
     1681 aaacccggcc ttcaaggagc cggttgaggc tttatgctac acaagagcat taaggggtca
     1741 agagtcgaaa acgcgcagat cagacttgtg ttgcacgctt atgacgctgc gctgcaccat
     1801 ttttgatttt acagccgggc gcggcgaccc ccgaggcgga cgccaggggc agggcgctcg
     1861 cgcagcactt cgcggcggaa gcggaacagt tcggcggggc ggccccgggc ggcaacggcg
     1921 aacttgccgg tgccttccac cagcccctgt tccgccacca ggcggcggaa attctgcttg
     1981 tgcaggcgca agcctgccag cgcctccacc gcccgctgca gctccagcag ggtaaaggtg
     2041 ggcgccatca gctcgaacac cacggggcgg tatttcagtt tgccccgcag ccgcgcgatg
     2101 gcggtggcca gaatccggcg atggtcgaac agcatgggag tgcccaaatt tccatttatc
     2161 gggcgagcgc ctttcgccgg cttaccaccg ctgtcgcgat aaaattcctc caccagcccc
     2221 gcttcataca aaagctcgta gcgctccagc acgcgctctt cgtcccaacc ttcgccgaaa
     2281 cagacattga cgcgatcacg ccgcagttcg gcgctttccg cattgggcgc gtccttcacg
     2341 aatttcttca gcgccggcag gatggtgctt tcgatcatgg cgggcttggt gtcgcgccag
     2401 tcttcccagg gaaaatagtg ataccagccg cgccattggg tttccggcgc ctccttgccc
     2461 tggcgcgtca aggccagata tcccaccgac accacgcggg tgccggccga accggaggcg
     2521 ggcagatgcc gccccttgtc gccgcccgct ggcgtatgcc ggcccttatc gccaaacgtg
     2581 tagagttgct cggtatagcc caggtcgaat ttggtctgct cgcccaccca tttgcgcagg
     2641 cccgattcca aggtgcgctg ctgctccgga tcgaagggac cgaacggcag cgcgtcttcc
     2701 gtcccgtcat gcgccaccac cagcaccgat gggcgttcgc cttccaccgc cacgatggcg
     2761 gccgacaggc cgatggagac aaggtccttg gcgctcaccg tgtttctctc acaggcccac
     2821 cagcgggaag gcggtggtga cgccttcctc caccagcaaa ggcggggcca tcgcattcac
     2881 cgccgcgatc atcttgccct ggcgtcccag cgcttcgtcg gcatggcgca ccaacaggcg
     2941 attgggctgg gcatgcgggg cgcgctggcg catggcgtgc gcaatttcga tctcgcggtc
     3001 cggccccagc cggtcgcaca ggatggtgaa ggccgatgcc atcgaacggg agattccggc
     3061 ccagcaatga atcagcaagg gctgccggcc atcccacgcc cgcgaaaaat ccagcagcgc
     3121 gtcgatatgc cggcgcgccg gcggatcggt gccggcggcg gggtccacga tatcgttgac
     3181 ccccagccgc aaatgcttgg cggccggaaa gcccgccggg gtcgtgatca tatgctcggg
     3241 cgacagcagg ctgatcagat gcgaaggggc atgggcatcg agggcgtcgg caaggctcga
     3301 caagggggca accaggaggc ggggcatggc cccttttaac agctaatgcg cggttttttg
     3361 aacggctagt tgagatcgca aagccggcca aaccgggcca ggaacaggcc ttgcgcctcg
     3421 gcggtgctca aagggaccag ccggggcgtt ttcacgccct tggggggcgt tccgaacagc
     3481 cggcgggcct cgggctcctc gaagccggcc agctgggtgg cctcgtaata ggccgagagg
     3541 tgatcggccc gtttgagcag ggtcttgagg ggggcgggaa tctgcgccgg caggccgaag
     3601 cgcagatgaa ttgcagcctg aagtttttcc tccaaggcct tgtaattgac gccgactgcc
     3661 gccttgaagg gactgatgag gtcgccgaca acatattcgg gcgcatcgtg cagcagcgcc
     3721 atcagccggg cctcccgcga cagccggggc gacagttcgg ccaccagccg ctccaccagc
     3781 acgctgtgct gggcgactga gaaggcatgt gcccctttgg tctggccgtt ccagcgcgcc
     3841 acccgcgcca ggccgtgagc gatgtccgca atctcgatgt ccagcgggct gggctccagc
     3901 aggtccagcc gccgtccgct cagcatccgc tgccaggcac ggggcttttt tccagaattt
     3961 tttgaacttg gccggtcagg catagagcag ccgtgtcgcg acaatggtga gggttgcggc
     4021 cagcacgatg cgcagcgccc ggtcgggcaa gc
//
LOCUS       DATMDK010000101         5182 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_3019459,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000101 DATMDK010000000
VERSION     DATMDK010000101.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 5182)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5182)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5182
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3019459"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..662)
                     /locus_tag="VNN98_02020"
     CDS             complement(<1..662)
                     /locus_tag="VNN98_02020"
                     /inference="COORDINATES: protein motif:HMM:NF015431.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HWM60893.1"
                     /translation="MEPKKPTLDQIAVFLAIVETGSFAAAARRLGRAASVISYAIANL
                     ESQLGVTLFARAGTARPALTDAGRAILSDSRGLAIALDGLLAKARGLTQGLEAEVSLV
                     VDVMLPAKKLVKALDEFRKKYPTVALRLRVEALGAVTQAVLEGAAAFGISGPLEMASD
                     LLTRGPAGSVKLLAVAAPDHPLALMAGPVSAAAARDHIQLVLTDRSALTDGRDFGVVS
                     VK"
     gene            762..1373
                     /gene="wrbA"
                     /locus_tag="VNN98_02025"
     CDS             762..1373
                     /gene="wrbA"
                     /locus_tag="VNN98_02025"
                     /EC_number="1.6.5.2"
                     /inference="COORDINATES: protein motif:HMM:NF002999.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003955 - NAD(P)H dehydrogenase (quinone)
                     activity [Evidence IEA];
                     GO_function: GO:0010181 - FMN binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H:quinone oxidoreductase"
                     /protein_id="HWM60894.1"
                     /translation="MAAPKVLIPFYSRTGTVEALAKAVAEGAEAEGAEVRLRRARELI
                     GHDVMSSVPGWKESAEAMNARYPAPTPEDAVWADAVIFGTPTRFGNVSSELKAYIDGL
                     GGLWAQGKLVGKTGSAFAGSSQPHGGNESTVISMWNPLAHLGFIIVPTGYADGVMFAG
                     AGSPYGASVISGHPPSGPTEAELAVARFQGKRVTQVARKLIAA"
     gene            1384..1830
                     /locus_tag="VNN98_02030"
     CDS             1384..1830
                     /locus_tag="VNN98_02030"
                     /inference="COORDINATES: protein motif:HMM:NF024844.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MaoC family dehydratase"
                     /protein_id="HWM60895.1"
                     /translation="MQELYLEDFAVGRRFISTTRGLDADQIKAFASQFDPQPFHLDEA
                     AAAESFFHGLAASGWHTAAITMSLLVKSGMPIAGGLIGAGAEIQWPRPVRPGDVLQVE
                     SEVLAVTPSRSRPERGMITVKSETKNQHGEVVQILTSKMLVWKRPT"
     gene            complement(1933..3549)
                     /locus_tag="VNN98_02035"
     CDS             complement(1933..3549)
                     /locus_tag="VNN98_02035"
                     /inference="COORDINATES: protein motif:HMM:TIGR00831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015385 - sodium:proton antiporter
                     activity [Evidence IEA];
                     GO_process: GO:0006814 - sodium ion transport [Evidence
                     IEA];
                     GO_process: GO:0006885 - regulation of pH [Evidence IEA];
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter"
                     /protein_id="HWM60896.1"
                     /translation="MLLPELPLTFSLVAVTGFAALGARRWRIPYSIFLVLLGLAIGFL
                     PGIPRIELRPDLVLSLFLPPLLYRAGVDMSWRGFHANLRPILLLAVGAVIFTAVAVAG
                     LSHYLLGLPLAAGFVLGAVVSPPDAVAPMAIARRFALPQRVLTILEGEGLVNDATALI
                     LFSFAVGAVTLGRTFSLPAAIGEFLVIVAGEIAWGLFIGWGALSLRRWAGEPRVEMVF
                     ALLTPFAAFWVPESLGGSGVLATVIAGLYVSWNGPRFISPATRLQGFFVWDLVVYLIE
                     GVIFLMTGLQARVVADTLDLTQWEHLALACAAVCLAIIVVRFIWVFLATYLPRLLLPA
                     LARKDPAPPWQSTFVIAFTGIRGVVSLAAALSIPLMADGMPFPDRGLMLLVTFAVILV
                     TLVGQGFTLPWVIGLLGIAEHGKREADDDKKREIAARLASIDAALARLDSLEGAVASP
                     EMAAALRRRSTDRRAYFVAACQDLAAGDVSNAAATLQLQFVDAERASIADLYYREEIS
                     DQARRRIERELDLEDSRIRHAAESGAARAL"
     gene            complement(3884..3960)
                     /locus_tag="VNN98_02040"
     tRNA            complement(3884..3960)
                     /locus_tag="VNN98_02040"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(3924..3926),aa:Arg,seq:ccg)
     gene            complement(4045..4374)
                     /locus_tag="VNN98_02045"
     CDS             complement(4045..4374)
                     /locus_tag="VNN98_02045"
                     /inference="COORDINATES: protein motif:HMM:NF039485.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YidB family protein"
                     /protein_id="HWM60897.1"
                     /translation="MGLLDDVVGAVKGAVLGGDGAQGVLSNVLQGSSLGGMSGVLEQL
                     NSSGLGNLVSSWTGGGQGQPISVDQLKGALTPEHIQEIAGALHMDPDGALAHLAEHLP
                     GLAGNQA"
     gene            complement(4406..4771)
                     /locus_tag="VNN98_02050"
     CDS             complement(4406..4771)
                     /locus_tag="VNN98_02050"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM60898.1"
                     /translation="MRLLFATAFICAAIALPASAADTAQQTSMKTCAATWKTMAAADK
                     AKTKYTEYMGTCMKGSAKSAAAPVAAPAMAMTAKPAAAMKMAAPAGGGSAKCKDGKTV
                     TYKNRSGTCSGHGGVATWM"
     gene            complement(4858..>5182)
                     /locus_tag="VNN98_02055"
     CDS             complement(4858..>5182)
                     /locus_tag="VNN98_02055"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM60899.1"
                     /translation="SAIQIELLRGEIALPLGAKLVLVHALDPAAFAGVAGSPDWPSAM
                     LGAVATEDLPKVRDLAVLTLAGCGEKLAPVLQARLPGARIEILPPAGDIGRAQDGIAA
                     FFASQ"
BASE COUNT          962 a         1711 c         1684 g          825 t
ORIGIN      
        1 ctcttgaccg agaccacacc gaagtcgcgc ccgtcggtca gggccgagcg atcggtcaac
       61 accagctgga tatgatcgcg cgccgcggcc gcgctgaccg gccccgccat caaggccaag
      121 ggatgatcgg gggccgccac cgccagcagc ttcaccgatc cggcggggcc gcgggtcaga
      181 agatcgctgg ccatctccaa aggaccgctg atcccgaaag cggccgcgcc ttccagcacc
      241 gcctgggtca ctgcacccaa cgcttccacc cgcaggcgca gcgccacggt ggggtatttc
      301 ttgcggaatt catccaacgc tttgaccagc ttcttggcgg gcagcatcac atccaccacc
      361 agactgactt ccgcttccag gccctgagtc agcccacgcg ccttggccag caatccgtcc
      421 agggcaatgg ccaggccccg gctgtcggac aggatggcgc gccccgcatc ggtcagcgcc
      481 gggcgggcgg tgccggcgcg tgcgaacagg gtgacgccca actggctttc cagattggcg
      541 atggcgtagc tgatgaccga ggcggcgcgc cccaaccggc gggcggcggc ggcgaagctg
      601 ccggtttcca caatcgccag aaagacggcg atctggtcca gggtgggttt ttttggctcc
      661 aactgttcaa ctttctcgaa tagtaagatc gaaattatgc cagttttcag aacaaggcca
      721 gatgcccatc ctccgcgttg agcttcaaac ggagagtccc catggctgcg cccaaagttc
      781 tgatcccctt ttactcccgc accgggaccg tcgaggcgct ggccaaggcg gtggctgaag
      841 gcgccgaggc cgagggcgcc gaggtgcggc tgcgccgggc ccgcgaactg atcggccatg
      901 acgtcatgag ttcggtgccg ggttggaagg aaagcgccga agcgatgaac gcgcgctatc
      961 ccgcccccac gccggaagat gcggtatggg ccgatgccgt gatcttcggc acccccaccc
     1021 gcttcggcaa tgtgtcgtcc gagctgaagg cctatatcga cgggcttggc ggattgtggg
     1081 cgcagggcaa attggtcggc aagacgggtt cggccttcgc cggctcgtcc cagccgcatg
     1141 gcggcaatga gtccacggtg atctcgatgt ggaatcccct ggcgcatctg ggcttcatca
     1201 tcgtgcccac cggctatgcc gatggcgtga tgtttgccgg ggcgggctcg ccctatggcg
     1261 cgtcggtgat ttccggccat cccccgtccg gccccaccga ggctgaactg gccgtggcgc
     1321 ggtttcaggg caagcgcgta acccaggtgg cgagaaagct catcgccgct taacattgag
     1381 ggcatgcaag aactctatct cgaagacttt gcggtgggtc ggcgcttcat cagcacgacc
     1441 cgcgggctgg acgccgacca gatcaaggcc ttcgcctccc agttcgatcc gcagcctttt
     1501 catctcgatg aagcggcggc ggcggaaagc ttcttccacg gcctggccgc cagcggctgg
     1561 cacaccgccg ccatcaccat gtcgttgctg gtgaaaagcg gtatgccgat cgcgggcggg
     1621 ctgatcggcg cgggggcgga gatccaatgg ccgcgcccgg tgcgccccgg agatgtgctg
     1681 caggtggaaa gcgaggtgct ggcggtgacg ccgtcgcgct cccgccccga gcgcggcatg
     1741 atcacggtga aaagtgaaac caaaaaccag cacggcgaag tggtgcagat tctcaccagc
     1801 aagatgctgg tgtggaaaag gcccacctga aaaagacaca cctcttgtca tgcccgcgca
     1861 agcgggcatc caacttttcc atccggcggc gctgccctaa gttggattcc cgctttcgcg
     1921 ggaatgacaa cgttagaggg cgcgcgcagc cccgctctca gcggcatgac gaatgcgcga
     1981 atcctccaga tcaagttcgc gctcgatgcg gcggcgggct tggtcgctga tctcttcccg
     2041 gtaatacaga tcggcgatgc tggcgcgctc ggcatccacg aattgcagtt gcaaggtcgc
     2101 cgccgcgttg ctgacgtcac cagccgccag atcctggcag gcggcgacga aataggcacg
     2161 gcggtccgtg ctgcgccgtc tcagcgccgc cgccatttcg ggcgacgcca ccgcgccttc
     2221 cagagagtcc agccgcgcca gggccgcgtc tatgctggcc agcctggcgg cgatctcgcg
     2281 tttcttgtcg tcatcggcct cgcgcttgcc gtgttcggcg atgcccagaa ggccgatcac
     2341 ccagggcagg gtgaagccct ggcccaccag ggtcaccagg atcacggcga aggtgaccag
     2401 cagcataagg ccgcgatcag ggaagggcat gccgtcggcc atcaggggaa tggacagcgc
     2461 cgccgccagc gacaccacgc cccggatgcc ggtgaaggcg atgacgaagg tgctctgcca
     2521 gggcggggca gggtccttcc gcgccaaggc cggcagcagc agacgcggca gataggtcgc
     2581 caggaaaacc cagataaaac gcaccacgat gatggcgagg caaaccgccg cgcaggccag
     2641 cgccagatgt tcccattgtg tgaggtccag ggtgtcggcc accacccggg cctgcagccc
     2701 cgtcatcagg aagatcacgc cctcgatcag atagaccacc aggtcccaga cgaaaaatcc
     2761 ctgcagccgc gtggcgggcg agatgaagcg cggtccgttc cagctgacat aaagcccggc
     2821 gatcacggtc gccagcacgc ccgatccgcc caggctttcg ggcacccaga aggcggcgaa
     2881 gggcgtgagc agggcgaaca ccatctccac ccttggttcg ccggcccagc ggcgcagcga
     2941 caacgccccc cagccgataa acaggcccca ggcgatttcg cccgccacga tcaccagaaa
     3001 ttcgccgatc gccgccggca gcgaaaaggt ccgccccagg gtcaccgcgc ccaccgcaaa
     3061 gctgaacagg atcagggcgg tggcgtcgtt caccagccct tcgccttcca gaatggtgag
     3121 gacgcgctgg ggcagggcaa agcgccgcgc gatggccatg ggcgccaccg cgtcgggcgg
     3181 tgacaccacc gcccccagca cgaagcccgc ggccagcggc agacccagca ggtaatgcga
     3241 caggcccgcc accgccacgg cggtaaagat taccgcgccc accgccagca gcaggatggg
     3301 ccgcaggttg gcgtgaaagc cgcgccaact catatcgact ccggcgcgat agagcagcgg
     3361 cggcaagaac aggctcagca ccagatcggg gcgcaattcg atgcgcggta tccccggcag
     3421 aaacccgatt gccagcccca gcagcaccag gaagatggaa tagggaatgc gccagcgtcg
     3481 cgcccccagg gcggcgaaac cggttaccgc gaccaggctg aaggtgaggg ggagttcggg
     3541 gaggagcatg ggggcagtat agcaagcggg tggcggcgat gcggggcaag ataaaaatgg
     3601 gaagcgggaa gtcggaacca ttgccgcgcc cgcctcaagt cgcggacgcg cggcgggctt
     3661 ggcggcgcca ttcatttgcg cggggggcgg tgcaggttgc atggcgccca ctcgcctgat
     3721 cgctatcgct cgaagacctg aggtgctgcc gcgctgcgcc cgccctcaag tcgctgacgc
     3781 gcgggcggtg caggttgcat ggcgcccact cgcctgctcg ctgtcgctcg caggctcggt
     3841 ggcactcagt ttttgtaagc tcgctgcgct cgctaacaaa aactggtgca cccgacagga
     3901 ttcgaacctg tgacctctgc cttcggaggg cagcgctcta tccagctgag ctacgggtgc
     3961 ggactttggc cggtccggct cgctataaag aaaacgggcc cgccttgcaa agcgagcccg
     4021 ttttcgtaag aaaaaagcgt gtgttcaggc ctggttgccg gcaagcccgg gcaggtgctc
     4081 ggccagatgg gccagcgcgc cgtcggggtc catatgcagg gcgcccgcga tttcctggat
     4141 atgttccggc gtcagcgcac ccttcagttg atcgacactg atcggctggc cctggccgcc
     4201 gccggtccag gacgacacga gattgcccag tccggaagag ttgagctgtt ccagcacgcc
     4261 cgacatgccg cccaacgacg aaccttgcag gacattgctc agaacgccct gggcaccgtc
     4321 accgcccaaa actgcgccct ttacggcgcc gacgacatca tccaacaaac ccattgcctg
     4381 ctcctgtgag agttaggtgc taaaactaca tccaggttgc gacgccgccg tgaccggaac
     4441 aggtgccgct gcggtttttg taggtgacgg tcttgccgtc tttgcacttg gccgagccgc
     4501 cgcccgcggg tgccgccatc ttcatggcgg cggccggctt ggcggtcatt gccatggccg
     4561 gggcagcaac aggcgcggct gcgctcttgg cgctaccttt catgcaggtg cccatatact
     4621 cggtgtattt ggtcttggcc ttgtcggcgg cggccatggt tttccaggtc gcggcgcaag
     4681 tcttcatgct ggtctgctgc gcggtgtcgg cggcgctggc gggcagagcg atggcggcac
     4741 agatgaaggc ggtggcgaaa agcaaacgca tgcaaagacc cccttgttga taatccgacc
     4801 gtgatcttcc gcgcgctgca aagaccttgc aagcggattc gcccctgtct cgaaaaatta
     4861 ttggctggca aaaaatgctg caatgccgtc ctgcgcccgc ccaatatcgc cggcaggcgg
     4921 cagaatctcg atcctggccc ccggcagccg cgcctgcagc accggtgcca gcttttcacc
     4981 gcacccggcc aatgtcagca ccgccagatc gcggactttg ggcagatcct cggtcgccac
     5041 tgctcccagc atggcagacg gccaatcggg gctgcccgcg acgccggcaa aggcggccgg
     5101 gtccagggca tgcaccagca ccagcttggc acccagcggc agcgcgattt cgccgcgcag
     5161 cagctcgatc tggatggccg ag
//
LOCUS       DATMDK010000102         3453 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2104684,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000102 DATMDK010000000
VERSION     DATMDK010000102.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3453)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3453)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3453
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2104684"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..768)
                     /gene="thiS"
                     /locus_tag="VNN98_02060"
     CDS             complement(<1..768)
                     /gene="thiS"
                     /locus_tag="VNN98_02060"
                     /inference="COORDINATES: protein motif:HMM:NF017501.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfur carrier protein ThiS"
                     /protein_id="HWM60900.1"
                     /translation="MTVEIILNGEARRLDAPTSVRGLLESLGLDPAKIAVERNLEIVP
                     RARYGEVALGHGDRLEIIHFIGGGNAPPTSKSLSVPREDKPLVIAGRSFKSRLIIGTG
                     KYKSYADNAAALEASGAEIVTVAVRRVNLTDRSQPMLVDFIDPRKVTYLPNTAGCFTG
                     EDAIRTLRLAREAGGWSLVKLEVLGEKKLLYPDMIETLRACEMLSKEDFQVMVYCSDD
                     PLMAKRLEDVGAVAIMPLAAPIGSGMGMQATVNIRMII"
     gene            848..1318
                     /gene="aroQ"
                     /locus_tag="VNN98_02065"
     CDS             848..1318
                     /gene="aroQ"
                     /locus_tag="VNN98_02065"
                     /EC_number="4.2.1.10"
                     /inference="COORDINATES: protein motif:HMM:NF003806.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003855 - 3-dehydroquinate dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0009423 - chorismate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II 3-dehydroquinate dehydratase"
                     /protein_id="HWM60901.1"
                     /translation="MAKKPKQSKILPIYILNGPNLNLLGHREPEVYGYTTLAEIEKMC
                     ADQAKGHGLSIIFRQSNREGEIVDHLQEARTSGCAVIINPAGYGHTSIAILDSIQALK
                     IPVIEVHLSNLAKREAYRHHSYVSKGATGIVMGLGAQGYLRAVDAIAEILKVKK"
     gene            1315..1806
                     /gene="accB"
                     /locus_tag="VNN98_02070"
     CDS             1315..1806
                     /gene="accB"
                     /locus_tag="VNN98_02070"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: protein motif:HMM:TIGR00531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009317 - acetyl-CoA carboxylase complex
                     [Evidence IEA];
                     GO_function: GO:0003989 - acetyl-CoA carboxylase activity
                     [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxyl carrier
                     protein"
                     /protein_id="HWM60902.1"
                     /translation="MTSKGKKPAAKSGAKSDTKPGIDAAAVRELAKLLKETGLTEIEI
                     EHQGAHIRVSRGATAAPAAAPALAAAPAAAAPAAPSAPSGPPAGAVPSPMVGTVYLSP
                     EPGRPPFVTVGKTVKEGDTLFIIEAMKTMNAITAPKGGKVLEISVSDGSPVEFGQTLA
                     VIA"
     gene            1806..3149
                     /gene="accC"
                     /locus_tag="VNN98_02075"
     CDS             1806..3149
                     /gene="accC"
                     /locus_tag="VNN98_02075"
                     /EC_number="6.3.4.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004280198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009317 - acetyl-CoA carboxylase complex
                     [Evidence IEA];
                     GO_function: GO:0003989 - acetyl-CoA carboxylase activity
                     [Evidence IEA];
                     GO_function: GO:0004075 - biotin carboxylase activity
                     [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxylase
                     subunit"
                     /protein_id="HWM60903.1"
                     /translation="MFEKILIANRGEIALRVIRACKEMGILTVAIHSTADSEAMHVKL
                     ADESVCVGPPAAAQSYLNIPAIIAACEITGAEAIHPGYGFLSENAKFADIIKEHGLTF
                     IGPTPEHIRMMGDKITAKQTVKELGIPTVPGSDGEVSDGDAARMAEEIGYPVLIKATA
                     GGGGRGMKVAKNAGELSFALSQARTEAKAAFGNDTVYMEKYLQRPRHIEIQILADSHG
                     HVVHLGERDCSLQRRHQKVWEEAGSPALNAQERNEIGGGVTKALKQLGYLGAGTIEFL
                     YEDGNFYFIEMNTRLQVEHPVSEAITGIDIVREQIRIATGAPLAFTQKDILFEGHAIE
                     CRINAENSFTFRPSPGTITQFHTPGGLGVRFDSAIYSGYRIPPFYDSLVGKLIVHAKN
                     RNECLLRLRRALDELVVDGIETTIPLFQKLVREPDIINGDYSIHWLEKYLASLGH"
     gene            3153..>3453
                     /locus_tag="VNN98_02080"
     CDS             3153..>3453
                     /locus_tag="VNN98_02080"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM60904.1"
                     /translation="MAALLPFQPETDIERRILDVRLRKYPADALMLELSNAELCIPSQ
                     TKTQGGWRGYVPVLLEQNGIVFVAVFTTASRQTRDFAPHLLRADGRSFVQRLPAGY"
BASE COUNT          682 a         1155 c          998 g          618 t
ORIGIN      
        1 gatgatcatg cggatgttca ccgtcgcctg catgcccatg cccgagccga tgggggcggc
       61 cagcggcatg atcgccaccg cgccgacatc ttccagccgc ttggccatca agggatcgtc
      121 gctgcaatag accatcacct gaaaatcttc cttggacagc atctcacatg cgcgcagggt
      181 ttcgatcatg tcgggataga gcagtttctt ctcgcccagc acttccagct tgaccaggga
      241 ccagccgccc gcttcgcgcg ccagccgcaa ggtgcgtatt gcgtcctcgc cggtgaagca
      301 gcctgcggtg ttgggcaggt aggtcacttt cctggggtcg atgaagtcca ccagcatggg
      361 ctggctgcgg tccgtgaggt tcacccgccg caccgccacg gtgacgatct cggccccgct
      421 ggcctccagc gcggcggcat tgtcggcata ggacttgtac ttgccggtgc cgatgatcag
      481 ccgggacttg aagctgcggc cggcgatcac cagcggcttg tcttcacggg gcacgcttaa
      541 agatttggaa gtggggggcg cgttgccgcc gccgatgaaa tggatgatct ccagccggtc
      601 gccatggccc agagcaacct cgccatagcg ggcgcgcggc acgatctcca gattgcgctc
      661 caccgcgatc ttggcggggt ccaaccccag gctctccagc aagccgcgca cgctggtggg
      721 cgcatccagc cgccgcgctt cgccattcag gatgatttca actgtcattg ctttggcacc
      781 ttaagcattt ccgtatccgt tgggatcaga ttataaggct tgaatcagct ttacccgcgg
      841 aaagtctatg gcaaaaaagc ccaaacaatc caagatctta cccatatata ttctcaacgg
      901 ccccaacctc aatctgctgg gacaccgtga gccggaggtc tatggctata ccaccctggc
      961 cgagatcgag aagatgtgcg ccgaccaggc caagggtcac ggcctttcca ttattttccg
     1021 ccagagcaat cgcgaaggcg aaatcgtcga tcacctgcag gaagcgcgca ccagcggctg
     1081 cgccgtgatc atcaatccgg ccggctatgg ccacacctcc atcgccatcc tggacagtat
     1141 ccaggcgctg aagattccgg tgatcgaagt gcatctgtcc aatctcgcca agcgcgaggc
     1201 ctatcgccat cattcctatg tctccaaggg cgccaccggc atcgtgatgg gcctgggggc
     1261 gcagggctat ctgcgtgccg tggacgccat tgccgaaatt ctcaaggtga agaaatgacg
     1321 tccaaaggca agaagcccgc agccaaatcc ggcgccaagt ctgatacaaa acctggcatc
     1381 gacgccgccg cggtacgcga gctggccaag ctgctgaagg aaaccggcct caccgaaatc
     1441 gagatcgagc atcagggcgc gcacatccgc gtcagccgtg gcgccaccgc cgcgccggct
     1501 gccgccccgg cgctcgccgc cgcaccggct gctgccgcgc cggccgcgcc ctccgcgccc
     1561 tcaggcccgc ccgccggtgc agtgccctcg cccatggtcg gcaccgtcta tctttcgccc
     1621 gaacctggcc ggccgccctt cgtgactgtc ggcaagacgg tgaaggaagg cgacacgctg
     1681 ttcatcatcg aagcgatgaa gacgatgaac gccatcaccg cgcccaaggg cggcaaggtg
     1741 ttggagatca gcgtctccga tggctcgccc gtcgaattcg gccagacact ggccgtcatc
     1801 gcctgatgtt cgaaaagata ctcatcgcca atcgcggcga aatcgccctt cgcgtcatcc
     1861 gcgcctgcaa ggagatgggc atcctgacgg tggcgatcca ttccaccgcg gacagcgagg
     1921 cgatgcatgt caagctggcc gatgagagcg tctgcgtcgg accgcccgcc gccgcccagt
     1981 cctatctgaa tatccccgcc atcatcgccg cctgcgagat caccggcgcc gaggccattc
     2041 atcccggcta tggcttcctg tccgagaacg ccaaattcgc cgacatcatc aaggaacatg
     2101 gcctgacctt catcggtccg acgcccgagc atatccgcat gatgggcgac aagatcaccg
     2161 ccaagcagac ggtgaaggag ctgggcattc ccaccgtacc gggctccgac ggcgaagtca
     2221 gcgacggcga tgcggcgcgc atggccgagg agatcggcta tcccgtgctg atcaaggcca
     2281 cggcgggcgg cggcggccgc ggcatgaagg tggccaagaa tgcgggcgag ctctccttcg
     2341 ctttgtccca ggcccgtacc gaagccaagg ccgctttcgg caacgacacc gtctatatgg
     2401 agaaatatct tcagcgcccg cgccatatcg aaatccagat cctggccgac agccacggcc
     2461 atgtcgtgca tctgggcgag cgcgattgct cgctgcagcg ccgccaccag aaagtgtggg
     2521 aggaagcagg cagtccggcc ctcaacgccc aagaacgcaa tgagatcggc ggcggcgtca
     2581 ccaaggccct taagcagctg ggctatctgg gcgccggcac catcgagttc ctgtacgaag
     2641 atggaaattt ctatttcatc gagatgaaca cccgcctgca ggtcgagcat cctgtcagcg
     2701 aagccatcac cggcatcgac attgtgcgcg agcagatccg catcgccacc ggcgcgcccc
     2761 tggccttcac ccagaaggac atcctgttcg agggccatgc catcgaatgc cgcatcaatg
     2821 ccgaaaattc cttcaccttc cgcccctcgc ccggcaccat cacccagttc cacacccccg
     2881 gcgggctggg cgtgcgcttc gactccgcga tctattccgg ctatcgcatc ccgcccttct
     2941 acgacagcct ggtgggcaag ctgatcgtcc atgccaagaa ccgcaacgaa tgcctgctgc
     3001 gcctgcgccg cgccctggac gaattggtgg tggacggcat cgaaaccacc atccccttgt
     3061 tccagaaact ggtgcgcgag cccgacatca tcaatggcga ctattcgatt cattggcttg
     3121 agaagtacct agccagtctg ggccactagc ctttggcagc gctcctgccg ttccagcccg
     3181 aaaccgacat cgagcgccgc attctggatg tgcggctgag aaaatatccc gctgacgcgt
     3241 tgatgctgga actgtccaat gcggaactct gcattcccag ccagaccaag acacaaggcg
     3301 gctggcgcgg ctatgtcccc gtccttctgg aacagaatgg cattgtcttc gtcgcggtct
     3361 ttacaacggc gtcgcggcag acacgggact tcgcaccgca cctgctgcgg gcggacggca
     3421 ggtcatttgt ccagcggtta cccgccggct atg
//
LOCUS       DATMDK010000103         3326 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1880168,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000103 DATMDK010000000
VERSION     DATMDK010000103.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3326)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3326)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3326
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1880168"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..652
                     /locus_tag="VNN98_02085"
     CDS             <1..652
                     /locus_tag="VNN98_02085"
                     /inference="COORDINATES: protein motif:HMM:NF006667.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004739 - pyruvate dehydrogenase
                     (acetyl-transferring) activity [Evidence IEA];
                     GO_process: GO:0006086 - acetyl-CoA biosynthetic process
                     from pyruvate [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="pyruvate dehydrogenase complex E1 component
                     subunit beta"
                     /protein_id="HWM60905.1"
                     /translation="PIVFRGPNGPAARVAAQHSQDYSAWYASVPGMKVIAPYSAADAK
                     GLLKAAIRDPNPVIFLENEILYGKSFPVPKLDDFVLPIGKARIVRSGKDVTIVAYSFT
                     VGQALEAAEKLAEDGIDAEVIDLRSLRPLDMDTVIASVKKTNRIVTMEQGWPICSIGS
                     EVCSRVALEAFDYLDAPPTKVSGKDVPMPYAANLEKLALPTVEDLIEAVKAVSYKA"
     gene            656..2050
                     /locus_tag="VNN98_02090"
     CDS             656..2050
                     /locus_tag="VNN98_02090"
                     /EC_number="2.3.1.12"
                     /inference="COORDINATES: protein motif:HMM:TIGR01349.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045254 - pyruvate dehydrogenase complex
                     [Evidence IEA];
                     GO_function: GO:0004738 - pyruvate dehydrogenase activity
                     [Evidence IEA];
                     GO_function: GO:0004742 - dihydrolipoyllysine-residue
                     acetyltransferase activity [Evidence IEA];
                     GO_process: GO:0006086 - acetyl-CoA biosynthetic process
                     from pyruvate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate dehydrogenase complex dihydrolipoamide
                     acetyltransferase"
                     /protein_id="HWM60906.1"
                     /translation="MATNILMPALSPTMEEGKLTKWLVKEGDTVKSGDILAEIETDKA
                     TMEFEAVDEGKIGKILVPEGSEGVKVNAPIAVLLEEGEKADAVVDIAGAMKDIKAAVK
                     AEVPLTPVAANGKAAAPLPLPPMGGSEGRARDQARPVEGGAAQAAPGAARLFASPLAK
                     RIAASKGIDLSGVAGTGPRGRIVKSDVENAKPGAAKPAAAGAPAVAGAALSGIAPLPD
                     ARLFYAAGSYEEIPHDSMRKAIAKRLTSAKTLIPHYYLTIDCNLTALMQTREALNGAA
                     PFKKGEGGKDKVPAYKLSVNDFVVKASAMALIKHPDVNASWTDTAILRHKNADVGIAV
                     AIPSGLITPIVFRCETKGLVDISNEVKDLAGRAKDKKLKPSEYEGGGFSVSNLGMFGI
                     KSFTSIINPPQSCIIAVGAGEERAIVKDGKIEVATMMTVTMSCDHRVVDGATGAKFLQ
                     TLKTFIEEPASMLL"
     gene            2068..3168
                     /locus_tag="VNN98_02095"
     CDS             2068..3168
                     /locus_tag="VNN98_02095"
                     /inference="COORDINATES: protein motif:HMM:NF023828.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3667 domain-containing protein"
                     /protein_id="HWM60907.1"
                     /translation="MSDFEAILETGGAAAVEFAAAAIAEHGGKTGQCANCREPLLGPY
                     CAVCGQPRDIHRRSFGGLLKDFVQDVASFDSRILRTARALLFQPGELARAYHEGRTQP
                     FVPAVRLYLFVSLMFFLLLSMTGIALIQFEMQSNPLAVQIDAKGHPYVAADGERQALP
                     QRYADGNLHYNFNTRISFFSRLGSIRPHIPADARQRMLDKLHDRTQRAAERGRWITQG
                     INSGLGKLMADPASLNGPITSWVPRVLFLLLPLFALLLAAFYWRQRETFLFVDHLVFS
                     LSFHSFVFALLMGAALVAQVLPSIAVDWVVVAVVPVYLLLAMRRMYRQNWFWTGMKFA
                     TLSTIYTLFFLLPAFGIIISLAIFGVEGPHIG"
     gene            3180..>3326
                     /locus_tag="VNN98_02100"
     CDS             3180..>3326
                     /locus_tag="VNN98_02100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001738005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HWM60908.1"
                     /translation="MDTFDVIVVGGGPGGYVCAIRCAQLGLKTAVVERDRMGGICLNW
                     GCIPT"
BASE COUNT          620 a         1023 c         1046 g          637 t
ORIGIN      
        1 ccccattgtg ttccgcggcc ccaacggtcc ggccgcgcgc gtggcggccc agcacagtca
       61 ggattattcg gcctggtatg ccagcgtgcc cggcatgaag gtgattgcgc cttactcggc
      121 cgccgatgcc aagggcttgc tgaaagcggc gatccgcgat cccaatccgg tcatcttcct
      181 ggaaaatgaa atcctttacg gcaagtcgtt cccggtgccc aagctggacg atttcgtact
      241 gccgatcggc aaggcgcgca tcgtgcgctc cggcaaggat gtcaccatcg tcgcctactc
      301 cttcaccgtg ggtcaggcgc tagaagctgc cgagaagctg gcggaagacg gcatcgacgc
      361 cgaagtgatc gacctgcgca gcctgcggcc actggacatg gacaccgtga tcgcgtcggt
      421 gaaaaagacc aaccgcatcg tcaccatgga acagggctgg ccgatctgct ccatcggctc
      481 ggaagtctgt tcgcgcgtgg cattggaggc gttcgattat cttgatgcgc cgcccactaa
      541 ggtttcgggc aaggacgtgc ccatgcccta tgccgccaat ctggaaaagc tggccttgcc
      601 gacggtcgaa gatttgatcg aggccgtcaa agccgtcagc tacaaggcgt aaccgatggc
      661 caccaacatt ctcatgcccg ctttgtcgcc caccatggaa gagggcaagc tgaccaaatg
      721 gctggtcaag gaaggcgaca ccgtcaagtc tggcgacatc ctggccgaaa tcgagaccga
      781 caaggcgacg atggaattcg aggccgtgga cgagggcaag atcggcaaga tactggttcc
      841 cgaaggcagc gaaggcgtga aggtcaacgc ccccatcgcg gtgctgctgg aggaaggcga
      901 gaaggctgac gctgtcgtcg acatcgctgg cgccatgaag gacatcaagg cggcggtgaa
      961 agcggaggtc cccctcaccc ccgtcgcagc aaatggcaaa gccgccgccc ctcttcccct
     1021 cccccccatg ggggggtccg aaggacgggc gcgcgaccaa gcgcgccccg tggagggtgg
     1081 cgccgcgcaa gcggcgccgg gggcggcacg cctctttgcc tcgccgttgg ccaagcgcat
     1141 tgccgcgagc aagggcatcg acctttccgg cgtcgccggc accggcccgc gcggacgcat
     1201 cgtcaagtcc gacgtggaaa acgccaaacc gggtgcagcc aagccggctg ctgcgggtgc
     1261 gcccgctgtc gctggtgcgg cactatcggg tatcgcaccg ctgccggatg caaggctgtt
     1321 ctatgccgcg ggcagctacg aggaaatccc gcacgactcc atgcgcaagg ccattgccaa
     1381 gcgcctgacc agcgccaaga cgctgatccc gcattactac cttaccatcg actgcaacct
     1441 gacggcgctg atgcagacgc gcgaggcgct gaacggtgca gcgcccttta aaaagggaga
     1501 ggggggcaag gataaggtcc cggcctacaa gctgtcggtg aatgatttcg tggtgaaggc
     1561 ttcggccatg gcgctgatca agcaccccga tgtgaatgcg tcctggacgg acaccgccat
     1621 cctgcgccac aaaaacgccg atgtcggcat cgccgtggcc attccgtccg gcctgatcac
     1681 ccccatcgtg ttcaggtgcg agaccaaggg gctggtggac atctccaacg aagtgaaaga
     1741 cctggcgggc cgcgccaagg acaagaagct caagcccagc gaatatgagg gcggcggctt
     1801 ctcggtttcc aatctgggca tgttcgggat caagagcttc acctccatca tcaacccgcc
     1861 gcaaagctgc attatcgcgg tgggcgcggg cgaggagcgc gccatcgtca aggacggcaa
     1921 gattgaagtc gccaccatga tgaccgtgac catgtcctgt gatcaccggg tggtggacgg
     1981 cgccaccggg gccaagttcc tccagacgct caagaccttc atcgaggaac cggcctccat
     2041 gcttctctag cgcggcggag gcgccccatg agcgacttcg aggccattct ggaaaccggc
     2101 ggtgcggcgg cggtggagtt cgccgctgct gccatcgccg agcacggcgg caagaccggc
     2161 caatgcgcca attgccgaga gccgttgctg ggcccttatt gtgcggtctg cggccagccc
     2221 cgcgatatcc atcgccgctc gttcggcggg ttactgaaag acttcgtcca ggacgtcgcc
     2281 agcttcgaca gccgcatcct gcgcaccgcg cgggcgctgc tgttccagcc gggcgaactg
     2341 gcgcgggcct atcatgaagg ccgcacccag cctttcgtgc cggcggtgcg gttgtacctg
     2401 ttcgtgtcgc tgatgttttt tttgctgctg tcgatgaccg gcatcgcgct gatccagttc
     2461 gaaatgcagt ccaatcctct tgcggtgcag atcgatgcca agggacatcc ttatgtcgct
     2521 gcggatggcg aaaggcaggc gctgccgcag cgttatgccg acggcaacct gcattataat
     2581 ttcaacacca ggatcagttt cttttcccgg ctggggtcca tccgtccgca tattccagcc
     2641 gacgcacgcc agcggatgct ggataagctg catgacagga cccaacgcgc tgcggaacgg
     2701 ggcaggtgga tcacgcaagg catcaacagc gggcttggga aattgatggc cgatccggcg
     2761 tctctcaacg ggccgatcac aagttgggtg cccagggtat tgttcctgct tttgccgttg
     2821 ttcgcgttgc tgctggcggc cttctactgg cgccagcgcg agacttttct ttttgtagac
     2881 catctggttt tttccctgtc gttccacagc tttgtcttcg ccctgctgat gggggcggcg
     2941 ctggtggcac aggtgctgcc ctctattgcc gttgattggg tggtcgtggc ggtcgttccg
     3001 gtctatctgc tgctggcgat gcggcgtatg tatcgccaaa actggttctg gacggggatg
     3061 aaattcgcca ctttgtcaac aatctacaca ctgttcttcc tgctgccggc gttcggcatc
     3121 atcatctcgc ttgcgatttt tggggttgaa ggcccgcata taggttagag gtaaaaccca
     3181 tggatacttt cgatgtcatc gtggtcggcg gcggcccagg cggctatgtc tgtgccatcc
     3241 gctgcgctca gctgggcctg aagacagcgg tggtggaacg cgaccgcatg ggcggcatct
     3301 gcctgaactg gggctgtatc ccgacc
//
LOCUS       DATMDK010000104         3547 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2336275,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000104 DATMDK010000000
VERSION     DATMDK010000104.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3547)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3547)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3547
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2336275"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(147..2297)
                     /locus_tag="VNN98_02105"
     CDS             complement(147..2297)
                     /locus_tag="VNN98_02105"
                     /inference="COORDINATES: protein motif:HMM:NF024753.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-binding-like beta-propeller repeat protein"
                     /protein_id="HWM60909.1"
                     /translation="MSRTRKFLAGTAALIALGGAYAFAPKAFAQGHGVFTDAQATAGH
                     SAYVTSCAGCHRANLAGGGDAPGLGGNSFMTSFGNRSTADLYKFIVTSMPAGAPGSLS
                     EEQYTNITAYLLWANGAKAGAAPFNKTTAVKVSAIATGTIPPEAIAAQNLGKMAAMEA
                     RAAEFATPAGHGLTVSGTVKNYVDVTDEMLGHPADDEWLMYRRNYQGWSFSPLTQITP
                     DNVKTLTLKWAWNMNEGGASQVTPIVHAGVMFLSNTSNTVQALDARTGELIWENRIGP
                     VSKIAYGGTRSLAIYHDKVFVATTDAKIHALDARNGKIVWEQTLGNPNNSATGGVMVM
                     RGKVLTGLTGCDNYSENNCYISAFDADTGKRDWKFFTTALEGQPGGDTWNGLPNLLRG
                     GGDTWIAGTYDPELNTTYWGVAQTKPWFRASRKTFGAATLYSSSTLALDPDTGKLKWY
                     FQHAPGESLDLDEVFERVLIDHGDQKTLMTIGKPGILWKLDRVTGKFIAAKETLFQNV
                     FANIDHKTGAVTYRKDIIDQKTNQWLSSCPGPEGGHDWQATSYNQPSDLLIIPLSQSC
                     VMIQGHDVDMKLGGGGTAASQKFFFMPGTHQNMGKLVAYRTSDMKEVWSWQQRVPFLT
                     AVLSTGGGVAFVGDFNRSFKAVDVKTGKIVWQTRLGNTVQGYPVSFSLDGKQYIAVAT
                     GLGGGSPQQKPTMLLDEVHRPSTGHQLYVFGLPD"
     gene            complement(2299..2739)
                     /locus_tag="VNN98_02110"
     CDS             complement(2299..2739)
                     /locus_tag="VNN98_02110"
                     /inference="COORDINATES: protein motif:HMM:NF019095.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CHRD domain-containing protein"
                     /protein_id="HWM60910.1"
                     /translation="MSRPGRILSCATLMLLLATPAFAAGYEAELDPVPFDAVNRADVL
                     GSIGNVTATLDGGTLTISGSFSNLTSNATGGSVRIGLAKGVPGDAIAALTVSHGRLGQ
                     VSGTVKLNAAQAAALNKQALYIRIDSEKAPDGNLQGWLESVGNN"
     gene            complement(2769..>3547)
                     /locus_tag="VNN98_02115"
     CDS             complement(2769..>3547)
                     /locus_tag="VNN98_02115"
                     /inference="COORDINATES: protein motif:HMM:NF013429.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016853 - isomerase activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="sugar phosphate isomerase/epimerase"
                     /protein_id="HWM60911.1"
                     /translation="ANPMELQKLMDAAGLTFIGASNGEKGQSTNFIDVDQIPKTMADH
                     IAFCRDFLQPLGCDHWKINMGARPAGGPSEEQLRRLADTLNELGAKTIAMGVRLAPHP
                     HIWGPLEREKDMRWVMDHTDPKYVWMTADTGHLVLGGGDPVQIISDYFPRVAEVHLKD
                     TYAKYRGNTQTPTPEMHAQASVYHNLGGGGVDFPAVFDVLRKKHFKGWAIFDVDGPRK
                     GDDGYDAIGGNRELAVDDYISHNINYLRDVIGIKLPPYST"
BASE COUNT          622 a         1082 c         1117 g          726 t
ORIGIN      
        1 gtgaggggtg agttgagcgc agaactcacc cctcacctag caaaatctaa gcacttagct
       61 ccgtatgcac tccgctaagt gcaagatttt gcgtcctctc cctcaagggg agagggatta
      121 atgagtagac atgataacaa gcgactctag tccggcaatc caaacacata cagctgatgc
      181 ccggtggacg ggcggtgcac ttcgtccagc agcatggtcg gcttctgctg cgggctgccg
      241 ccgcccaggc cggtggcgac cgcgatatac tgcttgccgt ccaggctgaa ggacaccgga
      301 tagccttgca ccgtgttgcc gagccgcgtc tgccagacga tcttgccggt cttgacgtcc
      361 accgccttga agctgcggtt gaagtcgccc acgaaggcga cgccgccgcc ggtggacagc
      421 acggccgtca ggaagggcac gcgctgctgc caggaccaaa cttccttcat gtcgctggtg
      481 cgataggcga ccagcttgcc catattctgg tgggtgccgg gcatgaagaa aaacttttgc
      541 gaggccgcgg tgccgccgcc gcccaatttc atatcgacat catgcccctg gatcatcacg
      601 cagctctggc tgagcggaat gatcaaaagg tcgctcggct ggttgtagct ggtggcctgc
      661 cagtcatggc cgccttccgg ccccgggcaa gacgaaagcc actgattggt cttctggtcg
      721 ataatgtcct tgcggtaggt caccgcgccg gtcttgtgat cgatattggc gaagacgttc
      781 tggaacagcg tctccttggc ggcgatgaac ttgccggtga cccggtccag tttccacagg
      841 atgccgggct tgccgatggt catcagcgtc ttctggtcgc cgtgatcgat caacacccgc
      901 tcgaacactt catctaggtc caggctttcg cccggcgcat gttggaaata ccatttcagc
      961 ttgccggtat cggggtccaa cgccagggtc gaagacgaat aaagcgtcgc cgcgccgaag
     1021 gtcttgcggc tggcgcggaa ccagggcttg gtctgggcca cgccccaata ggtcgtgttc
     1081 aattccggat cgtaggtgcc ggcgatccag gtatcgccgc cgccgcgcag caggttcggc
     1141 aagccgttcc aggtatcgcc gccgggctgg ccttccagcg ccgtggtgaa gaacttccag
     1201 tcgcgcttgc cggtgtcggc atcaaaggcg ctgatgtagc agttgttctc cgaatagttg
     1261 tcgcagccgg tgaggccggt gagcaccttg ccgcgcatca ccatcacgcc gccggtggcg
     1321 gagttgttgg gattgcccaa agtctgttcc cacacgatct tgccgttgcg ggcgtccagc
     1381 gcgtggatct tggcgtcagt ggtcgcgaca aagactttgt cgtgatagat cgccaggctg
     1441 cgggtgccgc cataggcgat cttggacacc gggccgatgc ggttctccca gatcagctcg
     1501 ccggtgcgcg catccagcgc ctgcaccgtg ttggaggtgt tggacaggaa catcactccg
     1561 gcatggacaa tgggcgtcac ctggctggcg ccaccctcgt tcatgttcca ggcccatttc
     1621 agggtcaggg tcttgacgtt gtcgggtgtg atctgggtga gcgggctgaa gctccagcct
     1681 tggtagttgc ggcggtacat cagccattcg tcgtccgccg gatgccccag catctcgtcg
     1741 gtgacgtcga catagttctt caccgtgccg ctcacggtca ggccgtggcc ggccggggtg
     1801 gcgaattcgg cggcgcgcgc ttccatggcc gccatttttc ccaaattctg tgcggcgatg
     1861 gcctcgggcg gaatcgtgcc ggtggcgatg gcggacactt tcacggcggt ggtcttgttg
     1921 aacggcgccg cgcccgcctt ggcgccattg gcccataaca ggtaggcggt gatgttggtg
     1981 tattgctcct cgctcaggct gccgggggcg cccgccggca tagaggtgac gatgaacttg
     2041 tagagatcgg cggtggagcg attgccgaac gaagtcatga agctgttgcc gcccaggccc
     2101 ggcgcatcgc cgccgcccgc caggttggcg cgatggcagc cggcacaact ggtgacgtag
     2161 gcggagtgac ccgccgtcgc ctgcgcatcg gtaaagactc catgcccttg agcaaaggct
     2221 ttgggcgcaa aggcataagc gccgcccagg gcgatcagcg cggccgtgcc ggccagaaat
     2281 tttctggtgc gagacatctt aattattccc cacagattcc agccagccct gcagattgcc
     2341 gtcgggggcc ttctcactat caatgcgaat gtaaagcgcc tgcttgttca gcgccgccgc
     2401 ctgcgcggcg ttcaacttca ccgtgcccga aacctggccc aggcggccat ggctgacggt
     2461 caaggcggca atggcatcgc ccggcacccc tttcgccagt ccgatccgca ccgaaccgcc
     2521 ggtggcgttg gaggtcaggt tggaaaagct gccgctgatc gtcagggtgc cgccgtccaa
     2581 tgtggccgtg acgttgccga tactgcccaa cacatcggcg cgattgacgg cgtcgaacgg
     2641 caccggatcc agttcggctt catagccggc ggcaaatgca ggcgtcgcca gcagcagcat
     2701 gagcgtggcg caactcaaaa ttcttccagg acgtgacatg cgccggttct cctgatcttt
     2761 cgtgagcgtt acgtggagta aggcggcagc ttgatgccaa tgacatcgcg cagataattg
     2821 atgttatgcg agatataatc gtccaccgcc agctcgcggt tgccgccgat cgcgtcatag
     2881 ccgtcatcgc ccttgcgcgg cccgtccacg tcgaaaatcg cccagccctt gaagtgcttc
     2941 ttgcgcagca cgtcaaacac ggcggggaag tcgacaccgc cgccgcccag attgtgatag
     3001 acggacgctt gcgcgtgcat ttccggcgtc ggggtctggg tattgccgcg atacttggca
     3061 taggtgtcct tgagatggac ttctgcaaca cggggaaaat agtcgctgat gatctgcacc
     3121 ggatcgccgc cgcccagcac cagatggccg gtgtcggccg tcatccagac atatttggga
     3181 tcggtgtggt ccatcaccca gcgcatgtcc ttttcgcgct ccagcggtcc ccagatatgg
     3241 ggatgcggcg cgagccgtac gcccatggcg atggtcttgg ctcccagttc gttcaaggtg
     3301 tcggccaggc gcctcagctg ctcctcgctc gggccacctg cggggcgcgc acccatgttg
     3361 atcttccagt gatcgcagcc cagcggttgc aggaaatcgc ggcaaaaggc gatgtggtcg
     3421 gccatggttt tgggaatctg gtccacgtcg ataaagttgg tggactgtcc cttctcaccg
     3481 ttcgaggccc cgatgaaggt cagacccgcc gcatccatca gcttctgcag ttccatggga
     3541 ttggcgc
//
LOCUS       DATMDK010000105         2610 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2794769,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000105 DATMDK010000000
VERSION     DATMDK010000105.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2610)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2610)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2610
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2794769"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            208..1401
                     /locus_tag="VNN98_02120"
     CDS             208..1401
                     /locus_tag="VNN98_02120"
                     /EC_number="2.7.2.3"
                     /inference="COORDINATES: protein motif:HMM:NF012389.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004618 - phosphoglycerate kinase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate kinase"
                     /protein_id="HWM60912.1"
                     /translation="MAFRTLDDLDVKAKRVLVRADLNVPVADGAVTDDTRIVRQAPTL
                     KELAERGAKVIVLSHFDRPKGKVVPSMSLKVLLAPLSDAVGRRVAFAEDCIGPIAEQA
                     VAALKDGDVLLLENTRFHKGEEDNDPVMAKELAALGDIFVNDAFSAAHRAHASTEGVA
                     RLLPNAAGRSMQAELTHLEKALGNPERPVLAVVGGAKVSTKIALLENLVQRIETLVIG
                     GAMANTFLAAQGVKVGKSLYEPDHLETARKVIHMAAESGAALLLPTDVVVAKEFKAGA
                     AHHTVPIAQIGDDEMVLDVGPDSIKAFENRLAVTRTLVWNGPFGAFEIPPFDTGTVAA
                     ARAVAGATKRGQLLSVAGGGDTVAALAHAGVEQDFTYVSTAGGAFLEWLEGKTLPGVD
                     ALTVK"
     gene            1411..2436
                     /locus_tag="VNN98_02125"
     CDS             1411..2436
                     /locus_tag="VNN98_02125"
                     /EC_number="4.1.2.13"
                     /inference="COORDINATES: protein motif:HMM:NF012496.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004332 - fructose-bisphosphate aldolase
                     activity [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I fructose-bisphosphate aldolase"
                     /protein_id="HWM60913.1"
                     /translation="MNLEALNTIAKKMVAPGKGILAADESTGTIQKRFDKIGVANTED
                     NRRDYRELLFRTEKTMRQHISGVILFDETIRQKAKDGTPLVKLIEAAGSIPGIKVDAG
                     AKPLAGAPNETITEGLDGLRERFVEYHKLGARFAKWRGVYEIAGGNPSHDAIHANAHA
                     LARYAALAQENGIVPIVEPELLMDGDHSIDRCEGVTEWILKEVFQELYYAGVKLEGMI
                     LKPNMVVPGKKAPKQNSVEEVAERTIKVLKRCVPGAVPGIAFLSGGQSDEEATAHLSA
                     MNAIGGLPWALTFSYGRALQAAPQAAWSGSCENVAKAQAAFAHRALMNSLAATGKWTK
                     ADEKKAA"
BASE COUNT          514 a          827 c          847 g          422 t
ORIGIN      
        1 tcggtgatga cctggtatga caatgaatgg ggcttctcca accgcatggc cgacaccgcc
       61 gtggcaatgg gcaagctgat ctaactccaa ccttgtcatg cccgtacccc ggctcgcgcg
      121 aagcgcgacc ggagtataaa ctccagcggg catccaactt atgtccctgg attcccgctt
      181 tcgcgggaat gccaaaagag aaaacagatg gccttccgca ccctcgatga cctggacgtc
      241 aaagcaaagc gcgtgctggt gcgcgccgat ctcaacgtgc cggtcgccga cggcgcggtc
      301 accgacgaca cccgcatcgt ccgccaggcg cccaccctca aggaactggc ggaacgcggc
      361 gcgaaggtga tcgtgctcag ccatttcgac cggcccaagg gcaaggtggt gccctccatg
      421 tcgctcaagg tgctgctggc gccattgtcg gacgcggtgg gccgccgggt cgctttcgct
      481 gaagattgta tcggccccat agcggaacaa gccgtcgccg cgctgaagga cggcgacgtg
      541 ctgctgctgg aaaacacccg cttccacaag ggcgaggaag acaacgatcc cgtgatggcc
      601 aaagagctgg cggcgctggg cgatattttc gtcaacgacg ctttttccgc cgcgcatcgc
      661 gcccacgcca gcaccgaggg tgtggcacgg ctgctgccca atgcggcggg gcgctcgatg
      721 caggccgaac tcacccatct ggagaaggcg ctgggcaatc ccgagcgccc cgttttggcg
      781 gtggtgggcg gggcgaaggt ctccaccaag atcgcgctgc tggaaaatct ggtgcaacgg
      841 atcgagacgc tggtgatcgg cggcgccatg gccaacacct tcctggccgc gcaaggcgtg
      901 aaggttggca agtcgctgta tgagcccgac catctggaga cggcgcgcaa ggtgatccac
      961 atggcggcag agtccggcgc ggcgctgctg ctgccgaccg acgtggtggt ggcgaaagag
     1021 ttcaaggcgg gcgcggcaca tcacactgtc cccatcgctc agatcggcga tgacgagatg
     1081 gtgctggatg tcggccccga cagcatcaaa gcctttgaaa acaggcttgc ggtcacccgc
     1141 accttggtgt ggaacggccc cttcggcgcc tttgagatcc cgcccttcga taccggaacg
     1201 gtggcggcgg cccgggcggt ggccggtgcg acaaaaaggg ggcagctgtt gagcgtggcg
     1261 ggcggcggcg ataccgttgc ggccctggcc catgcgggcg tggaacagga tttcacttac
     1321 gtctcgaccg cgggtggggc gtttctggaa tggctggaag gaaaaacctt gccgggcgtc
     1381 gacgcgctta cggtgaaata gaggcggatg atgaatctcg aagcgttgaa cacgatagca
     1441 aagaagatgg tggcgccggg caagggcatc ctggcggccg acgaatccac cggcaccatc
     1501 cagaagcgtt tcgacaagat cggcgtcgcc aacaccgaag acaatcgccg cgactatcgc
     1561 gaattgctgt tccgcaccga aaagaccatg cgccagcata tctccggcgt gatcctgttc
     1621 gacgagacca tccgccagaa ggccaaagac ggcacgccgc tggtcaagct gatcgaagcc
     1681 gcgggaagca tccccggcat caaggtggat gcgggcgcca agccgctggc cggcgcgccc
     1741 aacgagacca tcaccgaagg tctggatggg ttgcgcgaac gctttgtcga atatcacaag
     1801 ctcggcgcgc gcttcgccaa gtggcgcggc gtttatgaaa tcgctggggg caatcccagc
     1861 catgacgcca tccatgccaa tgcccatgcc ttggcccgct atgccgcgct ggcgcaggaa
     1921 aatggcatcg tccccatcgt cgagccggaa ctgttgatgg acggcgacca cagcatcgac
     1981 cgctgcgaag gcgtcaccga atggatactg aaggaagtct tccaggaact ctattatgcc
     2041 ggcgtgaagc tggaaggcat gatcctcaag cccaacatgg tcgtgccggg caagaaagcg
     2101 cctaagcaga attccgtgga agaagtcgcc gagcgcacca tcaaggttct gaaacgctgc
     2161 gtgccgggcg ccgtgccggg catcgccttc ctgtccggcg gccagtcgga tgaggaagcc
     2221 accgcccatc tgtcggcgat gaacgccatc gggggcctgc cctgggccct gaccttctcc
     2281 tatggccgcg ccctgcaggc cgcgccccag gccgcctggt ccggcagctg cgagaatgtc
     2341 gccaaggccc aggctgcctt cgcccatcgc gccttgatga acagcctggc cgccaccggc
     2401 aagtggacca aagcggacga gaagaaggca gcttgagcag ctgccgcctc tacctgcttt
     2461 cgccgccccg catcgcgccc acggatttcg ccggcgtgct caagggcgcg ctgggcggcg
     2521 gcgacgtcgc ctcgttccag ctgcgcctca agcagacaag cgatgacgaa atccgccgtg
     2581 ccgtcgatgt gctgcgccct atcgtgcagg
//
LOCUS       DATMDK010000106         2644 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_3021746,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000106 DATMDK010000000
VERSION     DATMDK010000106.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2644)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2644)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2644
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3021746"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..277
                     /locus_tag="VNN98_02130"
     CDS             <1..277
                     /locus_tag="VNN98_02130"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM60914.1"
                     /translation="AQHIAMTQEDVIGSLGDWEIILVGDLFYERPLAERLLTWLLPLE
                     IPALLGDPGRNYFPKTQVEKLATYSVQTTRDLEDREIRETGVYRLIR"
     gene            355..1797
                     /locus_tag="VNN98_02135"
     CDS             355..1797
                     /locus_tag="VNN98_02135"
                     /inference="COORDINATES: protein motif:HMM:NF024910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HWM60915.1"
                     /translation="MAVIPENPDDEGDLKRALGPWHLISLGIGCIIGAGIFVLTGHAA
                     AGYAGPGVVISFAIAGLGCLFAGLCYSEYASMIPVAGSAYTYTYATMGRLLAWIIGWN
                     LVLEYLAAASTVAVGWSGYFNNFLTNTIGVSVPHDFASAPIALTGFHAISATGTWFNM
                     PAVALIGLITYVLIVGVKTSANFNNAMVIIKLTIVLVVIFGCFSYIVPANHTPFIPPN
                     TGEIGHFGWTGIFRATGVIFFSYIGFDAVSVAAQEAKNPQRDIPLGMLGSLLICTILY
                     MLMSYVLTGIAHYTTLNVAHPVSAAVEALPGTRWLAAFVNLGAIVGLASVVLVLLLAQ
                     SRVFYAMSKDGLIPHVFSVCHAKFSTPYKGNIVTGLFAALLAGLLPLDILGELVSIGT
                     LAAFTIVCIGVMILRVRAPLAHRPFRTPFVWFTAPAGVFMCLFMMAFLPMDTWLRLAA
                     WTVIGLAIYFFYSSKHARPPRYVIVNQPAE"
     gene            1794..>2644
                     /locus_tag="VNN98_02140"
     CDS             1794..>2644
                     /locus_tag="VNN98_02140"
                     /EC_number="4.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF014079.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016831 - carboxy-lyase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UbiD family decarboxylase domain-containing
                     protein"
                     /protein_id="HWM60916.1"
                     /translation="MSYRSLRDFLARLEKDGELVRVKEPVSTVLEMTEIQTRLITEGG
                     PAVIFEKPIRADGTPSDMPVLVNLFGTVKRVAMGVTMGGKDRSTGGDLREVGELLAQL
                     RQPQPPRSFGEAAELLPLVKTILAMKPKTVGKPACQEIVLKGDDIDLSKLPVQTCWPG
                     EPAPLITWPLVVTKGPSDAREDNYNLGIYRMQLLNKNQTLMRWLKHRGGAQHHQRWGK
                     EKTAPLPAAAVIGADPGIILAAVTPVPETLSEYQFAGLLRGSRVELADCVSQPLKVPA
                     EAEIVIEG"
BASE COUNT          466 a          834 c          805 g          539 t
ORIGIN      
        1 tgcgcaacat atcgcgatga cgcaagaaga tgtcatcgga agtctgggcg actgggagat
       61 aattttggtg ggcgatctct tctatgaacg gccgctggcg gaacgcctgc tgacctggct
      121 gctgccgctg gaaataccgg cgctgctggg cgatccgggc cgcaactatt ttcccaagac
      181 gcaggtcgag aagctcgcca cttatagtgt ccagaccacg cgcgatctgg aggaccggga
      241 gattcgcgag accggggtct atcggcttat ccgttgagca atctgcccaa agctttgcac
      301 taggcgagcg cctgagcctc tgtcacagtg ccggcgcaat tggcggggaa cattatggcg
      361 gtcattcctg aaaatccgga cgatgaaggc gatctgaagc gggcgctggg accgtggcac
      421 ctgatctcgc tgggcatcgg ctgcatcatc ggcgccggca tcttcgtgct gaccggccac
      481 gccgctgccg gctatgccgg gccgggtgtg gtgatctctt tcgccatagc cgggctcggc
      541 tgtctgttcg ccggcctgtg ctattctgaa tatgccagca tgattccggt ggcgggcagc
      601 gcctatacct atacctacgc caccatgggc cgccttctgg cctggatcat cggctggaac
      661 ctggtactgg aatatctggc cgccgcttcc accgtcgcgg tgggctggtc cggctatttc
      721 aacaatttcc tcaccaacac catcggcgtc tccgtgccgc acgacttcgc cagcgcgccc
      781 atcgccttga ccggttttca tgccatcagc gccaccggga cgtggttcaa tatgcccgcc
      841 gtggcgctga tcgggctgat cacctatgtg ctgatcgtgg gcgtaaagac atccgccaat
      901 ttcaacaacg ccatggtgat catcaagctg accatcgtgc tggtggtgat tttcggctgc
      961 ttctcctaca tcgtgcccgc caaccacacg cccttcatcc cgcccaatac tggcgagatc
     1021 ggacatttcg gctggaccgg catcttccgc gccaccggcg tgatcttctt ttcctatatc
     1081 ggcttcgacg ccgtcagtgt ggcggcgcag gaagccaaga atccgcagcg cgatattccg
     1141 ctcggcatgc tgggctcgct gctgatctgc accatcctct acatgctgat gtcctatgtg
     1201 ctgaccggca tcgcccatta caccaccttg aatgtggccc atccggtgag tgcggcggtc
     1261 gaagccttgc ccggcaccag atggctggcg gccttcgtca atcttggcgc cattgtcggc
     1321 ttggcttcgg tggtgctggt gttgctgctg gcccagagcc gggtgttcta tgccatgtcc
     1381 aaggacggcc tgatcccgca cgtcttcagc gtctgccacg ccaagttcag tacaccttac
     1441 aagggcaata tcgtcaccgg cctgttcgcg gcgctgctgg cgggcctgtt gcctctggat
     1501 atattgggcg agttggtgag catcggcacc ctggccgcct tcaccatcgt ctgtatcggc
     1561 gtgatgatct tgcgggtgcg cgcacctctt gcccaccgcc cgttccgcac accctttgtc
     1621 tggttcaccg ccccggccgg cgtcttcatg tgcctcttca tgatggcctt cctgccgatg
     1681 gatacctggc tcagactggc ggcatggacg gtgatcgggc tggcgatcta cttcttttac
     1741 agcagcaagc atgcgcgtcc gccccgctat gtgattgtga accagccggc cgaatgagct
     1801 atcgttccct gcgcgatttc ctcgcccgtc ttgaaaaaga cggcgagctg gtgcgcgtga
     1861 aagagcccgt ctccactgta ctggaaatga cggagatcca gacaaggttg atcaccgagg
     1921 gcgggccggc ggtgatcttt gaaaaaccga tcagggccga cggcacccct agcgacatgc
     1981 cggtgctggt caacctgttc ggcaccgtga agcgcgtcgc gatgggcgtc accatgggcg
     2041 ggaaagatcg cagcacgggc ggcgacctgc gcgaagtggg cgaattgctg gcgcagctgc
     2101 gtcaacccca gccgccgcgc agcttcggtg aagcggccga actgctgccg ctggtgaaaa
     2161 ccatcctggc gatgaagccc aagacggtgg gcaaacccgc ctgccaggaa atcgtgctca
     2221 agggtgacga catcgacctc agcaagctgc cggtgcagac ctgctggccg ggcgagcccg
     2281 cgccgctgat cacctggccg ctggtggtga ccaaaggccc cagcgatgcg cgcgaagaca
     2341 attacaatct cggcatctat cgcatgcagc tgctgaacaa gaaccagacc ctgatgcgct
     2401 ggctgaagca tcgcggcggg gcgcagcatc atcagcgctg gggcaaagag aagactgcgc
     2461 ccctgcccgc cgcggcggtg atcggcgccg atcccggcat catcctggcg gcggtgacac
     2521 cggtgccgga gaccctgtcg gaatatcaat tcgccggatt gctgcgcggt agccgcgtcg
     2581 aattggccga ctgcgtctcc cagccgctga aagtccccgc cgaagccgag atcgtgatcg
     2641 aagg
//
LOCUS       DATMDK010000107         2747 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_294872,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000107 DATMDK010000000
VERSION     DATMDK010000107.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2747)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2747)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2747
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_294872"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..857
                     /locus_tag="VNN98_02145"
     CDS             <1..857
                     /locus_tag="VNN98_02145"
                     /EC_number="2.3.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005935796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="MBOAT family O-acyltransferase"
                     /protein_id="HWM60917.1"
                     /translation="NLAPFADAIFNAAGRGTHLGATDSWLGTLFFAFQIYFDFSAYSD
                     MALGSSVMLGIRLPVNFHSPYKSASIIEFWRRWHISLSAFLRDYLYVSLGGNRRGRGR
                     RYLNLFITMLLGGLWHGANWTFMLWGGLHGVYLAINHAFRHATKGMTPPPALRLPLHA
                     LSVALTFAATTLAWIVFRSSDLASARNVVGGLLGQGHSAIVSFSPLAAAVLLLLSFIV
                     WFMPNSMELMWRHKPALPSPYPDQPVTPAKFLSWKPTPLNAAAYGLLCIVAVLALSNL
                     KPFIYFQF"
     gene            893..1888
                     /locus_tag="VNN98_02150"
     CDS             893..1888
                     /locus_tag="VNN98_02150"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM60918.1"
                     /translation="MEKTGYAFWFLGTVALAITALAVFNALAGAYILNHPAGGSVQTL
                     SGFERALKPVWLEQIRPRLVFVGSSRVRDGFDPALIDPALATRSFNYGASSMTPYEAR
                     RFVQDALAHPSVRQIVVALDAFTGNGGPGEALPSFDETRLAVTPDGAPTPRRALWLFT
                     TRYLSGGALGMNALGAWSLAQLKDGQHAADRPDIFGAYGHMNAAVMQKDLNYRSRRVM
                     RMGDGAAGEFSTMLAAACHAPARLTVFFPPDNMAIIARYRMSDAAGFDVFKNSVSAAV
                     ARHNAQCPSKVALFDFMAPNPLTRETLRDGSSPDYVDLVHFRPPAGLWLLRQMGL"
     gene            complement(1883..2140)
                     /locus_tag="VNN98_02155"
     CDS             complement(1883..2140)
                     /locus_tag="VNN98_02155"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM60919.1"
                     /translation="MANFRTAMMAAAAAMTGSQALAADLSLSPGKPAGVREAQHGHPN
                     LPLIGAGVTAAVVGIVIATQSSSNAACGSACTVTTSPSTTS"
     gene            2324..>2747
                     /locus_tag="VNN98_02160"
     CDS             2324..>2747
                     /locus_tag="VNN98_02160"
                     /inference="COORDINATES: protein motif:HMM:TIGR01444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FkbM family methyltransferase"
                     /protein_id="HWM60920.1"
                     /translation="MDLLTEILAPLRPTAIVDVGANPIDGDPPYKAMLAAGLCRVIGF
                     EPQPAALARLLQAKGPHENYLPYALADGTERVLHICALEGMTSLLVPDPAHLALFNLF
                     PIWGTVKERIPVTTRKLDDIAEIAHLDFLKMDVQGAERE"
BASE COUNT          447 a          901 c          848 g          551 t
ORIGIN      
        1 acaatctggc gcccttcgcc gacgctatct tcaatgcggc cgggcgcggc acccatctgg
       61 gcgcgaccga cagctggctg ggcactttgt tcttcgcctt ccagatctat ttcgatttca
      121 gtgcctattc cgacatggcg ctgggctcgt cggtgatgct gggcatccgg ctgccggtga
      181 atttccattc gccctacaag tccgccagca tcattgaatt ctggcggcgc tggcacatct
      241 cgctgtcggc cttcctgcgc gactatcttt acgtgtccct gggcggcaac cggcggggcc
      301 gcgggcggcg ttacctgaac ctgttcatca ccatgctgct gggcgggctg tggcacggcg
      361 ccaactggac cttcatgctg tggggcggct tgcacggcgt ttacctcgcg atcaaccacg
      421 ccttccgcca tgccaccaaa ggcatgacgc cgccacctgc tctgcgtctg ccgttgcatg
      481 ccctttcggt ggcgctgacc tttgccgcca ccactctggc ctggattgtc ttccgcagct
      541 ccgatctggc cagtgcgcgc aatgtggtgg gcgggctgct gggccagggc cattcggcca
      601 tcgtcagctt ctcgccgctg gcggcggcgg tgctgttgtt gctgtccttc attgtctggt
      661 tcatgcccaa ttccatggaa ttgatgtggc ggcataagcc cgcgctgccc tcgccctacc
      721 ccgaccagcc ggtgacgccg gcaaaattcc tgtcctggaa gccgacgccg ctgaacgctg
      781 ccgcttatgg ccttctctgc attgtcgcag tgctggcgct gtccaatctc aaacccttca
      841 tctatttcca gttctgatgg aaaagcgcgt ttcgatggag aagcccactt caatggagaa
      901 gactggctac gccttctggt ttctgggcac tgtggcgctg gcgatcaccg cgctggcggt
      961 gttcaacgcc ctggcagggg cttacattct gaatcatccc gccggcggca gcgtgcaaac
     1021 cctgtcgggt ttcgaacgcg ccctgaagcc ggtctggctg gaacagattc gccccaggct
     1081 ggtgttcgtg ggctccagcc gggtacgcga cgggttcgat ccggcgctga tcgatccggc
     1141 gctggcgacc cgaagcttca actacggcgc ctccagcatg acgccttacg aagcgcgccg
     1201 ctttgtgcag gatgcactgg cgcatccctc cgtccgccag atcgtggtgg cgctggacgc
     1261 cttcaccggc aatggcggtc cgggcgaggc cctgcccagc ttcgatgaaa caagactggc
     1321 ggtgacgccg gacggcgccc ccacgccgcg ccgggcgctg tggctgttca ccacccgtta
     1381 cctgagcggc ggcgcgctgg gcatgaacgc gctgggcgcc tggtcactgg cgcaactgaa
     1441 agacggacag catgcggctg accgccccga tattttcggc gcctatggcc atatgaacgc
     1501 ggcggtgatg caaaaggacc tgaattaccg ctcgcgccgg gtcatgcgga tgggagacgg
     1561 cgcggcggga gaattctcca ccatgctggc ggccgcctgc cacgcgcccg cccggctgac
     1621 cgtgtttttc ccgcccgaca atatggcgat catcgcgcgc tatcgcatga gcgacgctgc
     1681 cggcttcgat gttttcaaga acagcgtgag cgcggccgtg gcccgccaca atgcgcagtg
     1741 cccgagcaag gtggcgctgt tcgacttcat ggcgcccaat ccgctgaccc gcgaaaccct
     1801 gcgggacgga tcaagccccg actatgttga cctggtacac ttccgtccgc ctgcaggcct
     1861 gtggctgctg cggcagatgg gcttatgacg tggtggacgg cgacgtcgtg acggtgcagg
     1921 cggaaccgca agccgcgttg ctgctgctct gggtggcaat cacgatgccg accaccgccg
     1981 ccgtgacacc ggcgccgatc aacggcaggt tgggatgacc gtgctgggct tcgcgcacac
     2041 cggccggctt gccggggctg agggaaagat cggccgccag cgcctgggaa ccggtcatcg
     2101 ccgccgccgc cgccatcatc gccgtcctga aattcgccat ctctgtcccc ctgaagtccc
     2161 gtcttgaaga cggtgtaaaa ggttgttctg gttggccaat caaccggccc cggtccgggc
     2221 tattaggacc aatccaggcg gttttgcaaa tgaacaatac ggtccggaac agaatcgttc
     2281 tctttttgtt ttcgcgggct gcggaaaagg ttatgactgg cccatggacc tcctgacaga
     2341 gattctcgcg cccctgcggc ccaccgccat cgtggatgtc ggcgccaatc cgatagacgg
     2401 cgatccgccc tacaaagcga tgctggcggc cggcctgtgc cgggtcatcg gcttcgaacc
     2461 gcaacccgcg gcgctggcgc ggctgctaca ggccaaaggc ccgcacgaaa attacctgcc
     2521 ctacgctttg gccgacggaa cggagcgcgt gctgcatatc tgcgccttgg aaggcatgac
     2581 cagcctgctg gttcccgacc ccgcccatct ggcgcttttc aatttgtttc ctatatgggg
     2641 aacagtgaaa gagcgcatcc ccgtcaccac ccgcaagctg gacgatatcg ccgagatcgc
     2701 gcatctggat ttcctgaaaa tggatgtcca gggggcggaa cgcgaga
//
LOCUS       DATMDK010000108         3336 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_963625,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000108 DATMDK010000000
VERSION     DATMDK010000108.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3336)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3336)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3336
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_963625"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(139..1095)
                     /locus_tag="VNN98_02165"
     CDS             complement(139..1095)
                     /locus_tag="VNN98_02165"
                     /inference="COORDINATES: protein motif:HMM:NF017085.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CHAD domain-containing protein"
                     /protein_id="HWM60921.1"
                     /translation="MDDPRAAVHSLVRRSLGPTQPVKAVPGYVAKSMRPEEAFRATLS
                     DCLAQITANAATLRAGRSVEGLHQLRVAFRRLEVALGAFGREFGQDWLEELRGRAKIL
                     AGRLAPARDLDVFVGKLLAGPPKSGVSDGLPQLRARAESARDQAWAAVQACISGVDFE
                     LFADDVAALASSQLPLTRDQRLPRTAIRMLDRQVRRVKKRGRVAASREEGDLHRLRIA
                     LKKLRYTAEFFAPLYPRRDVKRYLKKLRLLQNYLGDLNDVANVRRVVSEVLREKSKKD
                     EDGNLRYAAGAMVGWYGAQVPGAISRALKRYKKFKRVTPFWR"
     gene            complement(1206..1967)
                     /gene="hisF"
                     /locus_tag="VNN98_02170"
     CDS             complement(1206..1967)
                     /gene="hisF"
                     /locus_tag="VNN98_02170"
                     /EC_number="4.3.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017395071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000107 - imidazoleglycerol-phosphate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisF"
                     /protein_id="HWM60922.1"
                     /translation="MLKVRVIPCLDVKDGRVVKGVNFEGLRDAGDPVEQAILYDKAGA
                     DELCFLDITASHENRGTLLDVVHRTAEVCFMPLTVGGGVRTLEDIRALLLAGADKVSI
                     NTEAVSRPEFVKEAAEKFGSQCIVAAIDAKSVGGGKYEVFTHGGRKATGIDAVEHAKK
                     LVGFGAGEILLTSMDRDGVKSGYDLELTRAVSDAVGVPVIASGGVGNVQDLVDGVKKG
                     HASAVLAASIFHFGEVSIAQAKAALKDAGLPIRPI"
     gene            complement(1967..3007)
                     /gene="holA"
                     /locus_tag="VNN98_02175"
     CDS             complement(1967..3007)
                     /gene="holA"
                     /locus_tag="VNN98_02175"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: protein motif:HMM:TIGR01128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009360 - DNA polymerase III complex
                     [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta"
                     /protein_id="HWM60923.1"
                     /translation="MIVKSHEADRYVAHPPKGLMVALVYGPDAGLVQERAEKLLKSVV
                     PDLTDAFNAADLSEATLLADPARLADEVAAISMMGGRRVVRVRGAGNDLAELFESFMD
                     DPVLSSFGGAALLVIEAGDLAKTSALRKLFDGHKTAAALQCYPDSLRDLGDVVRDALR
                     AEGLSIAPDALEEAVSRLGSDRGVTRREIEKLLLYMHGQKQVALEDVRAVMGDEAEAR
                     SESACDAAAGGDLVKLDRELERLWVSDTQPAQVIRSAMGHFQKLLQARESTARGESLD
                     MVMKRLRPPVHFSRQAPFKAQAQRWNTDKLSEALDMLLDAEVLTRTTGVPSEAVCGRA
                     LMNIAAMAKGRM"
     gene            complement(3004..>3336)
                     /gene="lptE"
                     /locus_tag="VNN98_02180"
     CDS             complement(3004..>3336)
                     /gene="lptE"
                     /locus_tag="VNN98_02180"
                     /inference="COORDINATES: protein motif:HMM:NF016290.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA];
                     GO_process: GO:0043165 - Gram-negative-bacterium-type cell
                     outer membrane assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LPS assembly lipoprotein LptE"
                     /protein_id="HWM60924.1"
                     /translation="LIDSLQSDGDAAGKAYHLKITLNESQQGIALQNDATITRYNNTL
                     DARYTLSDAQGNVLTTGTQKELSAYNVVTSPYATLVAEQDASKRAAQDVAERIHLDLG
                     VWFRQHKK"
BASE COUNT          603 a         1095 c         1025 g          613 t
ORIGIN      
        1 gaggacaagc tttaagtgcg ggcgatccaa tttgtttcgg caagaaaaat ggatcacccg
       61 gacccttcgc aaaagctcag ggccgggcga tgacgaacta ttgagggttc aattgaatct
      121 aagataaccc tggcggaatt accgccagaa cggtgtgacg cgcttgaact ttttgtagcg
      181 cttcaaggcg cggctgatgg cgccgggcac ctgcgccccg taccagccca ccatggcgcc
      241 ggcggcatag cgcagattgc cgtcttcgtc ttttttgctt ttctcgcgca gcacttcgct
      301 gacgacccgg cggacattgg cgacatcgtt aagatcgccc agatagttct gcaacaggcg
      361 cagctttttt agatagcgct tcacgtcgcg cctgggatag agcggggcaa agaattcagc
      421 ggtgtaacgc agcttcttga gggcgatgcg caagcggtgc aggtcgcctt cctcgcggct
      481 ggccgcgact ctgccgcgct ttttcacccg ccgcacctgg cgatccagca tccgaatcgc
      541 ggtgcgcggc aggcgctggt cgcgggtcaa gggcagctgc gaggaggcca gcgccgcgac
      601 atcatcggca aagagctcga aatccacgcc ggaaatgcag gcctgtacag cagcccaagc
      661 ctggtcgcgc gcgctttcgg cgcgggcgcg cagctggggc aggccgtcgc tgacgcctga
      721 cttgggcggc ccggccagca gcttgccgac aaacacgtcc aggtcgcggg ccggggccag
      781 ccgtccggcc agaatcttgg cgcggccgcg caattcctcc agccagtcct ggccgaactc
      841 ccgcccgaag gcgcccagcg ccacttccag ccggcggaac gccacccgca actgatgcag
      901 gccttccacc gaccgacccg cccgtaaagt ggcggcattg gcggtgatct gggccaggca
      961 gtcggacaga gtggcgcgaa aggcttcttc cgggcgcatg gatttggcga catagcccgg
     1021 aaccgccttg accggctggg tcgggcccaa actgcggcgg accagggaat gtacggcagc
     1081 gcggggatcg tccatgcccg accttaagag caaattcgcg cggcgtgcaa tcgcgggagc
     1141 gaccggcaac gcggagtggc ggcaaagccg ccgcgcagcg tctgccggcg cgaccaaata
     1201 aaaagtcaga tcgggcggat tggcaatccg gcgtctttga gcgcggcttt tgcctgcgcg
     1261 atgctgactt cgccgaaatg gaagatggag gcggccagca cggcgctggc atggcctttt
     1321 tttaccccgt ccaccagatc ctggacattg ccgacgccgc cggaggcgat caccggcacg
     1381 cccaccgcgt cggacaccgc gcgggtcagt tccaagtcat agcccgattt caccccgtcg
     1441 cgatccatgg aggtgagcag gatttcgccg gccccaaaac ccaccagctt tttggcatgt
     1501 tccaccgcgt cgatcccggt ggctttgcgc ccgccatggg tgaagacctc gtattttcca
     1561 cccccgacgc tcttggcgtc gatggcggcg acgatgcatt gactgccgaa cttctccgcc
     1621 gcctctttga caaattccgg gcggctgacc gcttcggtgt tgatcgagac cttgtcggcg
     1681 cccgccagca gcagggcgcg aatatcttcc agggtgcgca ccccgccgcc caccgtcaaa
     1741 ggcataaaac agacttcggc ggtgcgatgc accacgtcca gcagagtgcc gcgattttca
     1801 tgactggcgg tgatgtcgag aaagcagagt tcgtcggcgc ccgctttgtc atacagaatc
     1861 gcctgctcca ccggatcgcc ggcatcgcgc aagccctcga aattcacccc cttgaccaca
     1921 cggccgtctt tcacgtcgag gcaggggatg acgcggacct tgagcattac atccgccctt
     1981 tcgccatggc ggcgatgttc atcaaggcgc ggccgcatac cgcttccgac ggaacgccgg
     2041 tggtgcgggt caggacttcg gcatccagca gcatgtccag cgcctcgctc aatttgtcgg
     2101 tgttccagcg ctgcgcctgg gccttgaagg gggcttgccg tgagaaatgc accggcggac
     2161 gcagccgctt catcaccatg tccaggcttt cgccgcgcgc ggtgctttcg cgcgcctgca
     2221 acaatttctg aaaatgcccc atggcgctgc ggatcacctg agccggctgg gtgtcagata
     2281 cccacagccg ttccagttcg cggtccagct tgaccagatc gccaccggcc gccgcgtcgc
     2341 aggcgctttc gctgcgcgct tcggcctcat cacccatcac ggcgcggaca tcttccagcg
     2401 ccacttgctt ttggccgtgc atgtacaaaa gcagcttttc aatctcccgc cgggtcacgc
     2461 cgcggtccga acccagccgc gacaccgctt cttccagcgc gtcgggcgca atcgagaggc
     2521 cttcggcgcg caaggcatcg cgcaccacgt cgcccagatc gcgcaatgag tcaggatagc
     2581 attgcagcgc cgcggcggtc ttgtgaccgt cgaacagttt gcgcaaggcg ctggtcttgg
     2641 ccagatcgcc agcttcgatc accagcaggg cagcgccccc aaaactacta agaaccgggt
     2701 cgtccataaa ggactcaaac agttccgcca ggtcgttgcc ggcgccgcgc acccgcacca
     2761 cccgccgccc gcccatcatg gaaatggcgg cgacctcgtc cgccagccgc gccggatcgg
     2821 ccaacaaagt ggcttcgctg agatcggcgg cattgaaagc atcagttagg tcgggcacca
     2881 cgcttttcag cagcttttcg gcgcgctcct gtaccaggcc ggcatcgggg ccatagacca
     2941 gcgccaccat cagccccttg ggcggatggg caacatagcg atcagcctcg tgacttttga
     3001 cgatcatttc ttgtgctgcc ggaaccagac gcccagatcc agatgaatgc gttcggccac
     3061 gtcctgcgcc gcgcgcttgc tggcgtcctg ctcggccacc agggtggcat agggcgaggt
     3121 caccacgtta taggccgaca attctttctg ggtgccggtg gtcagcacat tgccctgcgc
     3181 atcgctcaaa gtgtaacgcg catccagggt gttgttgtag cgggtgatgg tggcgtcgtt
     3241 ctgcaaggcg atgccctgct gggattcgtt caaggtgatt ttaaggtggt aggccttgcc
     3301 tgccgcgtcg ccgtcggact gcagcgagtc gatcag
//
LOCUS       DATMDK010000109         2450 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2107118,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000109 DATMDK010000000
VERSION     DATMDK010000109.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2450)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2450)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2450
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2107118"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1194
                     /gene="alr"
                     /locus_tag="VNN98_02185"
     CDS             <1..1194
                     /gene="alr"
                     /locus_tag="VNN98_02185"
                     /EC_number="5.1.1.1"
                     /inference="COORDINATES: protein motif:HMM:TIGR00492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008784 - alanine racemase activity
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alanine racemase"
                     /protein_id="HWM60925.1"
                     /translation="LMDAARRHRHPAAMGEGSLGDFEAARLTVRLPAIVANYRTYCRM
                     AGPTAVAGVVKADAYGLGAARVAPALAEAGCDSFFVARLEEGIALRKVVPRARIFVLD
                     GAQPDAVPALISFSLTPALNSLAEIAAWSAAAGAARASLDAVLHVDTGMNRLGLAGDE
                     LAILSGEHAKRLAGLNLVLVMSHLACGDEPGSKMNGQQLSRFRQALAKLPPAPASLAA
                     SHGAMLGLEYHFDLVRPGVALYGANPQQGPQQGKGAATPSLMQTACVLSARVLQLRRI
                     DSGESVGYAATFRAKRPSMLATMALGYADGVPRALSNKGVAAIKGVRVPIVGRVSMDM
                     MILDVTDLAEPPRTGDEVELLGDAVTLGEMAALAGTNEYEILTRLRRVPRIYEGESVG
                     ASRSD"
     gene            1202..1975
                     /locus_tag="VNN98_02190"
     CDS             1202..1975
                     /locus_tag="VNN98_02190"
                     /inference="COORDINATES: protein motif:HMM:TIGR00056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HWM60926.1"
                     /translation="MNFFANIGRAVMTVLAHIGRLALFTAKALAAIVSPPIYTRLIFS
                     QMIRIGYYSLPVVGLTAFFMGGVLALQIYLGGNRFGAEAIVPQVVVLGITRELGPVIA
                     GLMIAGRVAAAIAAEIGTMKVTEQIDALTTLATNPVKYLVAPRIVAAVISMPILTLIG
                     DSIGVFGGYVVSVYSLGFTGSVYLKNTVDFAHSDDITSGLIKAAVFGFIVALLGCYNG
                     FNSKGGAQGVGNATTYAVVSSSILILAADYVLTALLFHK"
     gene            1972..>2450
                     /locus_tag="VNN98_02195"
     CDS             1972..>2450
                     /locus_tag="VNN98_02195"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HWM60927.1"
                     /translation="MSTPKIQLIGVKKRFGAKVVLDGVGLTIEPRSSLVIIGGSGTGK
                     SVTIKSILGILRPDEGTILVDGEDITHINGGARDKVMKKFGMLFQGGALFDSLPVWEN
                     VAFGLIQGRGMGRKQARDIAIQKLAKVGLTEDVAFLSPSELSGGMQKRVGLARAIAA"
BASE COUNT          396 a          759 c          835 g          460 t
ORIGIN      
        1 ttgatggacg ccgcccgccg tcatcgccat cctgctgcca tgggtgaagg gagtctgggc
       61 gatttcgagg ccgcgcgcct gacggtgcgc ttgccggcta ttgtcgccaa ttatcgcacc
      121 tattgccgga tggcgggccc caccgccgtg gcgggggtgg tgaaagccga tgcctatggc
      181 ctgggggcgg cgcgggtcgc gcccgccttg gccgaggccg gctgcgattc attctttgtg
      241 gcgcggttgg aagagggcat cgctctgcgc aaggtcgtgc cccgtgcgcg catcttcgtg
      301 ctggacggcg cgcaacccga tgcggtgccg gcgctgattt ctttttccct gacgccggcg
      361 ctgaacagtt tggccgagat tgccgcctgg tcggcggcgg cgggcgcggc gcgggcttcg
      421 ctggatgcgg tgctgcatgt cgataccggg atgaaccggt tggggctggc gggcgacgag
      481 cttgccatcc tgtcgggcga gcatgccaag cggcttgcgg gcctcaacct ggtgctggtg
      541 atgagccatc tggcctgcgg cgacgagccc ggcagcaaga tgaacggcca gcagctgtcg
      601 cgcttccgcc aggcgctggc caagttgccg cctgcgcccg ccagcctggc tgccagccat
      661 ggcgcgatgt tggggctgga gtatcacttt gacctggtgc ggccgggggt ggcgctgtat
      721 ggcgcaaatc cgcagcaggg cccgcaacag ggcaaaggcg ccgcgacacc cagcctgatg
      781 cagaccgcct gtgtgctcag cgcccgggtg ctgcagctgc gccgaattga ctcaggcgaa
      841 agcgttggct acgcagccac gttccgcgca aaaaggccca gcatgcttgc caccatggcg
      901 ctcggatatg ccgatggcgt tcctcgcgct ttgtccaaca agggtgtcgc ggccatcaag
      961 ggcgtgcgtg tgccgatcgt gggccgggtt tccatggata tgatgatctt ggatgtaacc
     1021 gacttggcgg agccgccgcg caccggcgat gaagtggaat tgctgggcga tgccgtcacc
     1081 ttgggcgaga tggcggcgct ggcgggcacc aacgaatatg aaatcctcac ccggctgcgc
     1141 cgggtgccgc ggatatacga aggggagagc gtcggcgcga gccggagcga ttgaaacaag
     1201 tatgaatttc tttgcaaaca taggccgcgc cgtgatgacg gtgctggccc atatcggccg
     1261 cttggcgctg ttcacggcca aggcgctggc ggcgatcgtc agcccgccga tctatacccg
     1321 cctgatcttc agccagatga tacgcatcgg ctattactca ctgcccgtgg tcggcctcac
     1381 cgcctttttc atgggcggcg tgctggcgct gcagatttat ctgggcggca accgcttcgg
     1441 cgccgaggcc atcgtgcccc aggtggtggt cttgggcatc acccgcgagc tgggtccggt
     1501 gatcgctggc ttgatgatcg ccggacgggt ggccgcggcc atcgccgccg aaatcggcac
     1561 catgaaggtc accgagcaga tcgacgcctt gaccacgctg gcgaccaacc cggtcaagta
     1621 tctggtggcg ccgcgcatcg tggcggcggt gatctccatg cccatcctca ccctgatcgg
     1681 cgacagcatc ggcgtgttcg gcggttatgt cgtgtcggtc tatagccttg gcttcaccgg
     1741 ctcggtctat ctcaagaaca cggtggattt cgcccatagc gacgacatca cctcgggcct
     1801 gatcaaggcg gcggtgttcg gcttcatcgt ggcgctgttg ggctgctaca acggctttaa
     1861 ttccaagggc ggggcgcagg gcgtgggcaa cgccaccacc tatgcggtgg tgtcgtcctc
     1921 gatcctgatc ctggccgccg actatgtcct gaccgcgctg ctgttccaca aatgagcaca
     1981 ccgaaaatac aattgatcgg cgtcaagaaa cgcttcggcg ccaaagtggt actggacggg
     2041 gtgggcctga ccatcgagcc gcgctcctcg ctggtgatca tcggcggctc gggcaccggc
     2101 aagtcggtga ccatcaagtc catcctgggc atcctgcgcc cggacgaggg caccatcctg
     2161 gtggacggcg aggacatcac ccacatcaat ggcggcgccc gcgacaaggt gatgaaaaag
     2221 ttcggcatgc tgttccaggg cggcgcttta ttcgacagtc tgccggtgtg ggagaatgtc
     2281 gccttcggct tgatccaggg ccgcggcatg ggccgcaaac aggcgcgcga catcgccatc
     2341 cagaaactgg ccaaggtggg gctgaccgaa gacgtcgcct tcctcagccc gtccgaactg
     2401 tcgggcggta tgcaaaagcg tgtcggcctc gcccgcgcca tagccgccga
//
LOCUS       DATMDK010000110         2038 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_964245,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000110 DATMDK010000000
VERSION     DATMDK010000110.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2038)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2038)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2038
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_964245"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..298
                     /locus_tag="VNN98_02200"
     CDS             <1..298
                     /locus_tag="VNN98_02200"
                     /inference="COORDINATES: protein motif:HMM:NF012673.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="inositol monophosphatase family protein"
                     /protein_id="HWM60928.1"
                     /translation="DRTQLTQTPWPAMHVQNRNSVAYRLALVADGSADASVSLTAKRD
                     WDLAAADIILHEAGGLLTDSRGAALIYNRSVTTQSSLVAANPGLHSEIIALLRQ"
     gene            359..595
                     /locus_tag="VNN98_02205"
     CDS             359..595
                     /locus_tag="VNN98_02205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017978084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4170 domain-containing protein"
                     /protein_id="HWM60929.1"
                     /translation="MSESKQLLHFVFGGELKHTQDIEFKDLSKLDFVGMYPNFAEAKK
                     AWRAKAQATVDNAQMRYFVVHMHRLMEPDDDHHH"
     gene            655..>2038
                     /locus_tag="VNN98_02210"
     CDS             655..>2038
                     /locus_tag="VNN98_02210"
                     /inference="COORDINATES: protein motif:HMM:NF012869.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HWM60930.1"
                     /translation="MSSTPIASPPGETGAVIRRLLRDYVGSEWGLLALAIPCMLIASA
                     TAPMVPQLVNWEAKYIFQRHDAAWLLPLAVGGFGIAILRAATMFLGRMWIDSLGEKVV
                     ATAQRDMFSRLIHRDLADLNAVHSGQFVSNFLYDATLMRDAITQGVAAIFLESVSLVF
                     LLAYVLISDWELGLLILIMLPSVAWAMERLGGSMRRAATRGMQETGNLAIALSEAMDG
                     RRIVKAYGLEAHSVERVDSRLKARLKTLLKAVRLRAAAAPVSDIFLGATVALVLFVAG
                     WQSLHGQITLNAFMAFIAALLVALQPVRNLSQLWPTASAGIAAADRIFDSIDARPRIV
                     NRAGAGPLVAKGGAVSFRDVGFAYQADAEATLSQVSLDIPAGRKIALVGPSGAGKSTI
                     FNLLLRFYDAESGTIAVDGQDIQSVTLESLRAAIGVVTQEAVLFDESVADNIALGKPG
                     ASLGEIKAAAR"
BASE COUNT          342 a          657 c          647 g          392 t
ORIGIN      
        1 cgaccgcacc cagctgaccc agacgccctg gcccgccatg catgtgcaga accgtaactc
       61 ggtggcctat cgcctggcct tggtggcgga cggcagcgcc gatgccagcg tcagtctcac
      121 cgccaagcgc gactgggatc tggccgcggc cgacatcatc ctgcatgaag cgggcggctt
      181 gctgaccgac tcgcgcggcg cagcgctgat ctacaaccgc tcggtgacca cgcagtccag
      241 cctggtcgcc gccaatcccg gactgcacag cgagatcatt gcgctcctgc gacaataaga
      301 aaattgagca ccgtcgcccg gttgggcatg aatggtacgg cgcaacggcg gagttctcat
      361 gtccgaatcc aagcagcttc tgcatttcgt gttcggcggc gagctgaaac acacccagga
      421 cattgagttc aaagacctgt ccaagctgga ttttgtcggc atgtatccca actttgccga
      481 agccaagaag gcctggcgcg ccaaggccca agccacggtg gacaatgctc agatgcgcta
      541 tttcgtggtt cacatgcacc ggctgatgga accggacgac gatcaccatc actaagcttc
      601 tgggctgaca gggctttttg cccctcccgc ggacccgtgc tacaggacgc gggcatgagt
      661 tccacgccca tagcttcccc tcctggcgag accggcgcgg tcattcgccg cctgctgcgc
      721 gattatgtcg gcagcgaatg gggcctgttg gcgctcgcca tcccttgcat gctgatcgcc
      781 tcggcgaccg cgccgatggt tccgcaactg gtgaactggg aagcaaaata catctttcag
      841 cgtcacgatg cggcatggct gttgccgctg gcggttggcg gcttcggcat cgcgattctg
      901 cgcgctgcga cgatgttcct gggccggatg tggatcgact cgctgggaga gaaagtcgtg
      961 gcgaccgccc agcgcgacat gttctcccgc ttgatccacc gcgacctggc cgatctcaac
     1021 gcggtgcatt ccggccagtt cgtttccaat ttcctgtatg acgccacctt gatgcgcgat
     1081 gccatcaccc agggcgtcgc cgccatcttt ctggaatcgg tgtctctggt tttcctcctc
     1141 gcttatgtgc tgatcagcga ttgggaattg ggcctgctga tcttgatcat gctgccgtcc
     1201 gtggcctggg caatggagcg gctgggcggc tcgatgcgcc gcgccgccac ccgcggcatg
     1261 caggagaccg gcaacctggc cattgcgctg tccgaagcga tggacggacg gcgcatcgtc
     1321 aaagcctatg gcctggaagc ccacagcgtc gagcgggtcg attctcggct gaaggcacgg
     1381 ttgaagacct tgctgaaagc ggtgcggctg cgcgcggccg ccgcccccgt gagcgatatc
     1441 ttcctgggcg cgacagttgc cctggttctg ttcgtggcgg gctggcagag tctgcatggc
     1501 cagatcacct tgaacgcttt catggccttt attgccgccc tgttggtggc gcttcagccg
     1561 gtgcgcaatc tcagccaatt gtggccgacg gcgtccgctg gcatcgccgc agccgaccgg
     1621 atcttcgact ccatcgatgc gcggccccgc atcgtcaacc gggccggcgc cggaccgctg
     1681 gtggccaagg gcggcgcggt gagcttccgc gatgtgggct ttgcctatca ggctgacgcc
     1741 gaggcgacgc tgtcgcaggt gtcgctggat attcccgccg gccggaagat cgccctggtc
     1801 ggcccgtcag gcgccggcaa gagcacgatc ttcaacctgt tgctgcgctt ctacgacgcc
     1861 gaaagcggga ccatcgcggt ggatggccag gacatccaga gcgtcaccct ggaaagcctg
     1921 cgcgccgcga tcggcgtcgt cacccaggaa gcggtgctgt ttgatgaaag cgtggccgac
     1981 aatatcgccc tgggcaagcc cggcgcctcg ctgggagaga tcaaggcggc ggcgcgcg
//
LOCUS       DATMDK010000111         2991 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_3023171,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000111 DATMDK010000000
VERSION     DATMDK010000111.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2991)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2991)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2991
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3023171"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..653)
                     /gene="flgF"
                     /locus_tag="VNN98_02215"
     CDS             complement(<1..653)
                     /gene="flgF"
                     /locus_tag="VNN98_02215"
                     /inference="COORDINATES: protein motif:HMM:TIGR02490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0001539 - cilium or flagellum-dependent
                     cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal-body rod protein FlgF"
                     /protein_id="HWM60931.1"
                     /translation="MDNSLLVSLSQQLAAYRAMDVIANNLANVSTPGFKREAAKFEEY
                     ITHMRPAEGEKGPQSLSFVKDAGVMRDISQGNLEQTSAPYDVAIAGKGYFAVQTATGM
                     RYTRDGHFSLDANGNLVTSQGYQVQGDGGAITITPNDGDIHIAPDGTISSVVRGVGNQ
                     IGKLKVVDFADGSALIKQGANLYSTSQTPVAPASVNLQQGALEASNVQPVIEISHMI"
     gene            866..1411
                     /locus_tag="VNN98_02220"
     CDS             866..1411
                     /locus_tag="VNN98_02220"
                     /inference="COORDINATES: protein motif:HMM:NF015693.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009425 - bacterial-type flagellum basal
                     body [Evidence IEA];
                     GO_process: GO:0006935 - chemotaxis [Evidence IEA];
                     GO_process: GO:0071973 - bacterial-type
                     flagellum-dependent cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body-associated FliL family
                     protein"
                     /protein_id="HWM60932.1"
                     /translation="MAKKEKAPATEAGDDKPEGEATEGAPKKGFGRFLTKKMLMIAVP
                     ALLLVVGGGGAGAYFFLFKSSKTQEAKAEDVPLTPPKVAFSDMQDILVNIQSNDGTPA
                     YLKLGVSLELEDDAQKAALAPLMPRITDQFQAYLRELRLDDLKGSAGVLRLKEELLRR
                     VNVAAAPYKVRDVLLKEMIVQ"
     gene            1465..2529
                     /gene="fliM"
                     /locus_tag="VNN98_02225"
     CDS             1465..2529
                     /gene="fliM"
                     /locus_tag="VNN98_02225"
                     /inference="COORDINATES: protein motif:HMM:TIGR01397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009288 - bacterial-type flagellum
                     [Evidence IEA];
                     GO_process: GO:0001539 - cilium or flagellum-dependent
                     cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliM"
                     /protein_id="HWM60933.1"
                     /translation="MADETPAAATAEAPTAAATFETPPDTGASAAERVLNQDEIDSLL
                     GFDVNSDQMQDKSGVRAIINSALVSYERLPMLEIVFDRLVRLMTTSLRNFTSDNVEVS
                     LDSITSIRFGDYLNSIPLPAILAVFHAEELDNYGLFTVDSNLIYSIVDVLLGGRRGSS
                     AMRIEGRPYTTIERTLVQRMIEVIMQDMCAAFEPLAPVNFSLDRLETNPRFAAIARPA
                     NAAILVKLRIDMEDRGGRTELLLPYATLEPIRKLLLQQFMGEKFGRDSIWESHLATEL
                     WSTKVDIEAILDEQTMPLNQVMNLEVGQTMMLGAGPDSKIELRCRGVPLLTGRMGRVG
                     SSVAVRVDEAIERTDASRAL"
     gene            2557..2973
                     /locus_tag="VNN98_02230"
     CDS             2557..2973
                     /locus_tag="VNN98_02230"
                     /inference="COORDINATES: protein motif:HMM:NF039465.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6468 domain-containing protein"
                     /protein_id="HWM60934.1"
                     /translation="MTLPTLPTDLTFYLELGLDVLLAFTLAYCVILERRLAAVRRGQE
                     GLSRTIGELNMAISGAGASLRALKAAAGEAAQTLDERLKRARLHIDELSVLTTSGERI
                     AQRMEGAAASPRVAREIPDMPLPSTSILSRLGRAAQ"
BASE COUNT          587 a          930 c          896 g          578 t
ORIGIN      
        1 tcgatcatat ggctgatctc gatcaccggc tggacgttgg aggcttccag cgcgccttgc
       61 tgcaaattga cagaggcagg cgcgaccggg gtctggctgg tggaatagag gttggcgccc
      121 tgcttgatca aggcgctgcc atccgcgaaa tccacgacct tcagcttgcc gatctggttg
      181 ccgacgccgc gaaccacgct ggagatggtg ccatcgggcg cgatatggat atcgccgtca
      241 ttaggggtaa tggtgatggc gccgccatcg ccctgcacct gatagccctg gctggtcacc
      301 agattgccgt tggcgtcgag ggagaaatgg ccgtcacggg tatagcgcat gccggtggcg
      361 gtctggaccg cgaaatagcc cttgcccgcg atggcgacat cataaggggc gctggtctgt
      421 tcgagattgc cctggctgat gtcgcgcatc acgcccgcat ccttcacaaa gctgaggctc
      481 tgcggaccct tctcgccctc ggcggggcgc atatgggtga tatattcctc gaacttcgcg
      541 gcttcgcgct tgaaacccgg ggtggaaacg ttcgcgagat tgttcgcgat cacgtccatc
      601 gcccggtacg cggcgagctg ctgggaaaga ctaacaagaa gtgaattgtc catggcacct
      661 acccggatcc tttctggccc gtcgtaccca acagtgcagc ggttgtgcca gcataaaaac
      721 cccggttttg ttggcttttt cggggggcgc gggcggcatg cggaaaaact tgccgagcgc
      781 ttcaccgcac acccggcaat ttgaaccact ccttaaccac gtttgcatag ggtgacggcg
      841 cagagagaag tgctgggacc attgcatggc gaagaaagaa aaagctccgg caaccgaagc
      901 cggggacgac aagccggaag gcgaagccac agaaggcgcg ccgaagaagg gctttggccg
      961 cttcctcacc aagaagatgc tgatgatcgc cgtgccggca ctactgcttg tggtcggcgg
     1021 cggcggcgcg ggcgcctact tctttctctt caagagcagt aagactcagg aggccaaagc
     1081 ggaagacgtg ccgctgaccc cgcccaaggt cgctttcagc gacatgcagg acatactggt
     1141 caatatccag agcaatgacg gcacccccgc ctatctcaag ctgggcgttt cgctggagct
     1201 ggaagacgac gcgcagaaag ccgcgcttgc gccactgatg ccgcgcatca ccgatcagtt
     1261 ccaggcctat ttgcgcgaac tgcgcctcga cgatctcaag ggttcggccg gcgtgctgcg
     1321 cctgaaggaa gaattgctgc gccgggtcaa tgtggcggca gcgccctaca aggtgcgcga
     1381 cgtgctgctc aaggaaatga ttgttcaata agagcgtccg cgacagcggg agcgacaact
     1441 taataaattc aaaggcttat aggtatggct gacgaaaccc cggccgccgc aaccgcagag
     1501 gctcccaccg ccgcggcgac cttcgagacc ccgcccgata ccggcgccag cgccgccgag
     1561 cgggtattga accaggacga aatcgattcc cttttgggtt tcgacgtcaa ttccgaccag
     1621 atgcaggaca agtccggcgt ccgcgccatc atcaattcgg cgctggtctc ttacgaacgc
     1681 ctgccgatgc tggaaatcgt cttcgaccgc ctggtgcggt tgatgaccac cagccttcgc
     1741 aatttcacct cggacaatgt cgaagtcagc ctggattcga tcacctcgat ccgctttggc
     1801 gactatctca actccattcc cctgcccgcg atcctggcgg tgttccatgc cgaagagctc
     1861 gacaattacg ggctgttcac ggtggactcc aacctgatct attccatcgt ggacgtgctg
     1921 ctgggcggcc gccgcggctc cagcgccatg cgcatcgaag ggcgtcccta caccaccatc
     1981 gaacgcaccc tggttcagcg catgatcgaa gtgatcatgc aggacatgtg cgccgccttc
     2041 gagccgctgg cgccggtcaa tttcagcctg gaccgtctgg aaaccaatcc ccgttttgcc
     2101 gcgattgccc gccccgccaa cgccgccatc ctggtcaagc tgcgcatcga catggaagac
     2161 cgtggcgggc gcaccgaatt gttgctgccc tatgccacct tggagcccat ccgcaagctg
     2221 ctgctgcagc agttcatggg cgaaaaattc ggccgcgatt ccatctggga aagccatctg
     2281 gcgaccgaac tctggtccac caaggtggat atcgaagcca ttctggacga acagaccatg
     2341 ccgctgaacc aggtgatgaa cctggaagtc ggccagacca tgatgctggg cgccggcccc
     2401 gattccaaaa tcgaactgcg ctgccgcggc gtgccgctgc tcaccggacg gatgggccgg
     2461 gtgggttctt ccgtcgcggt gcgggtggac gaagccatcg aacgtactga tgcttctcgc
     2521 gccctttaat ttcaacgctt ttagagagat atcgccgtga ccctgccgac tcttcccact
     2581 gatctgacct tctatctgga acttgggctg gacgtgctgc tggctttcac cttggcttat
     2641 tgcgtaatcc tggagcgccg tctggccgcg gtgcgcaggg gccaggaagg cctgtcgcgt
     2701 accatcggtg aactcaacat ggcgatttcc ggcgcgggtg ccagcttgcg cgcgctgaaa
     2761 gcggcggccg gcgaagccgc ccagaccttg gatgagcggc tgaaacgcgc ccgcttgcat
     2821 atcgacgagc tctcggttct caccacctcg ggcgaacgca ttgcccagcg catggaaggc
     2881 gccgccgcca gcccgcgcgt cgcacgggaa attcccgaca tgccgctgcc gtccacgtcc
     2941 attctcagcc gcctgggaag ggccgcgcaa tgacttcttt caatttgaag a
//
LOCUS       DATMDK010000112         2483 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_520026,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000112 DATMDK010000000
VERSION     DATMDK010000112.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2483)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2483)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2483
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_520026"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..802)
                     /locus_tag="VNN98_02235"
     CDS             complement(<1..802)
                     /locus_tag="VNN98_02235"
                     /inference="COORDINATES: protein motif:HMM:NF012708.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FHA domain-containing protein"
                     /protein_id="HWM60935.1"
                     /translation="MSFILRQISKRVGAPDIVREKPLTAAEPVIGRGSDCDIQLTDLA
                     VSLRHAVLKQVAPGRVTVESLGVENFEANGKFVTNANLAVADSPVLNFGSHVLTLSPG
                     KDGSPGENGAILVLATARENTAAVFTAMDQKRAFSLKYALFSQRRTAWITGVFILLAC
                     LIFPIGVFVIDHNQHRMISATADRQWSSGPLSPGHHFLEKNCTACHQRAFVSVTDTAC
                     LSCHKAGLDKAAALQLASRTQSLGSPFPPDPAADHAPHDRLLAAAPPDP"
     gene            complement(807..1655)
                     /locus_tag="VNN98_02240"
     CDS             complement(807..1655)
                     /locus_tag="VNN98_02240"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM60936.1"
                     /translation="MAHESFLRHAHFRWLKIAVLLSLAVTAGFVATLMSANLRLHHTG
                     SSWFGYVSGTIGAGLIVWLALLGVRKRAMTDNAWSLKAWVSAHVYLGLSLIVIATLHS
                     GLQFGWNIHTLAYALMMLVILSGIFGITVYALIPPKLSDNRGETTQAQMLEKIHALDG
                     RLLDVARPLDQGQAALVRGAVQHTRIGGNVWQRLTNSHGNCATRHALTELAAARSRMS
                     DGPQAAALDQVLTLLEEKSATLGKARRHIRLRSLLEVWLFIHIPATLALIAALTAHII
                     SVFFFW"
     gene            complement(1692..>2483)
                     /locus_tag="VNN98_02245"
     CDS             complement(1692..>2483)
                     /locus_tag="VNN98_02245"
                     /inference="COORDINATES: protein motif:HMM:NF024247.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S dicluster domain-containing protein"
                     /protein_id="HWM60937.1"
                     /translation="LVDRGRRSATVRATVRSQVVRLDGKLFRELLDNKPALKKKLQDD
                     MKIRQQINNFIEQKKKKFGGVVDMYSEVAEFLVKQGIGEATDALLIDETLCIGCDNCE
                     RACADSHDGLSRLNREAGKTYAHLHVPTSCRHCEQPHCMTDCPPNAIRRGPDGEVFIS
                     DACIGCGNCQRNCPYGVIRMDSVPPKKPGLLQWMLFGMGPGPGEPDKDWLKKHYDPKK
                     PKVAIKCDMCSGKSGGPACVRACPTGAAIRVSPEQFLDVVKQGGR"
BASE COUNT          437 a          770 c          835 g          441 t
ORIGIN      
        1 tgggatcggg cggagccgcc gccagtagcc ggtcatgcgg ggcatggtcg gcggcgggat
       61 cgggcgggaa ggggctgccc aggctttgcg tccgtgacgc aagctgaagc gcggcggcct
      121 tgtccagtcc cgccttgtgg caggaaagac aggccgtgtc cgtcaccgag acaaaggccc
      181 gctggtgaca ggcggtgcaa ttcttttcca ggaaatgatg cccgggcgac agcggcccgc
      241 tggaccattg ccggtcggcg gtggcggaaa tcatgcggtg ctgattgtgg tcgataacga
      301 aaacgccgat gggaaagatc aggcaagcga gcaggataaa gacgccagtg atccaggcgg
      361 tgcggcgctg gctgaacaaa gcgtatttca gggagaaggc gcgcttctgg tccatggcgg
      421 tgaacaccgc cgcggtattc tcccgcgccg tggccagcac caggatcgcg ccgttctcgc
      481 ccggcgaccc atccttgccc ggcgataagg tcagcacatg gctgccaaag ttgagcacgg
      541 gggaatcggc caccgcgagg ttggcgttgg tgacgaactt gccgttggcc tcgaaatttt
      601 ctacgcccag cgactccacg gtgacacgcc ccggcgccac ctgtttcaac accgcatggc
      661 gcaggctgac cgccaggtcg gtgagctgga tgtcgcaatc gctgccgcgg ccgatcaccg
      721 gctcggccgc cgtcaggggc ttttcgcgca cgatgtcggg ggctccgacc cgcttgctga
      781 tctggcgcag aataaagctc atcgcctcac cagaagaaaa agacgctgat gatgtgcgcg
      841 gtaagcgcgg cgatcagcgc aagcgtggcg gggatatgga tgaacagcca cacttccagc
      901 aggctgcgca ggcggatatg gcggcgcgcc ttgcctaagg tggcgctttt ttcttccagc
      961 aaggtcaaga cctggtccag ggcggcggcc tgggggccgt cggacatcct gctgcgcgcc
     1021 gccgcaagct ccgtcagggc atgacgcgtg gcgcagttgc catggctgtt ggtcaggcgc
     1081 tgccagacat tgccgccgat gcgggtgtgt tgcacggcgc cgcgcaccag cgccgcctgg
     1141 ccctggtcca gtgggcgggc cacgtccagc aggcgtccgt ccagcgcatg gatcttttcc
     1201 agcatctgcg cctgggtggt ctcgccgcga ttgtcgctga gctttggcgg gatcagggca
     1261 tagacggtga tgccgaaaat gcccgacagg atcaccagca tcatcagagc ataagcaagc
     1321 gtgtggatgt tccagccgaa ctgcaagccg ctatgcaagg tggcgatgac gatcagcgac
     1381 aggcccagat agacatgggc ggaaacccag gccttgagcg accaggcatt gtcggtcatg
     1441 gcgcgcttgc gcacccccaa cagcgccagc cagacgatga ggccggcgcc gatcgtgccg
     1501 ctgacatagc cgaaccagct cgatccggtg tgatgcaggc gcaggttggc cgacatcaag
     1561 gtcgccacga acccggcagt cacggccagg ctgagcagca ccgcaatttt cagccagcgg
     1621 aaatgggcat ggcgcaggaa gctctcatgc gccacgacca ctcttgttgt ttgccgcggc
     1681 tgcaccaagg tctaacgccc gccctgcttg accacatcca ggaactgttc cggcgatacg
     1741 cggatggcgg cgccggtggg gcaggcgcgc acgcaggccg ggccgccgct cttgcccgag
     1801 cacatgtcgc atttgatggc gaccttgggc ttcttgggat cataatgctt cttcagccag
     1861 tccttgtcgg gctcgcccgg gcccgggccc atgccgaaca gcatccactg cagcaggccg
     1921 ggctttttcg gcggcaccga atccatgcgg atcacgccat aggggcagtt gcgctggcag
     1981 ttgccgcagc cgatgcaggc gtcgctgatg aagacctcgc cgtccgggcc acgccggatg
     2041 gcgttgggcg gacagtccgt catgcaatgc ggctgctcgc aatggcggca ggaggtggga
     2101 acgtggagat gggcataggt cttgcccgcc tcgcggttca ggcgtgacag cccgtcatgg
     2161 ctgtcggcgc aggcgcgctc gcaattgtcg cagccgatgc aaagcgtttc gtcgatcagc
     2221 agcgcgtcgg tggcctcccc gatgccctgc ttgaccagga attcggcgac ctcgctgtac
     2281 atgtccacca cgccgccgaa tttcttcttc ttttgctcga tgaaattgtt gatctgctgg
     2341 cggatcttca tatcgtcctg aagctttttc ttcagggccg gcttgttgtc cagcagttcg
     2401 cggaacagct tgccgtccag ccgcaccacc tgggagcgca cggtggcgcg cactgtggcg
     2461 gagcgccggc cgcggtccac cag
//
LOCUS       DATMDK010000113         2161 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_739985,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000113 DATMDK010000000
VERSION     DATMDK010000113.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2161)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2161)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2161
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_739985"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..244)
                     /locus_tag="VNN98_02250"
     CDS             complement(<1..244)
                     /locus_tag="VNN98_02250"
                     /inference="COORDINATES: protein motif:HMM:NF019931.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="QueG-associated DUF1730 domain-containing
                     protein"
                     /protein_id="HWM60938.1"
                     /translation="MRFADARGVPENAARLREFLAAGHHGGMDWMAERVGWRANPQDM
                     WPAAKSVIVLGLNYGPREDPLAILAQKDRAAISVYAL"
     gene            complement(285..929)
                     /locus_tag="VNN98_02255"
     CDS             complement(285..929)
                     /locus_tag="VNN98_02255"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0006749 - glutathione metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase family protein"
                     /protein_id="HWM60939.1"
                     /translation="MRRLFHLMLSPSCRLARLMVGEKRVACDPVLAEDSKQSLPVFQE
                     LDGTRAEGVWAILDHLENHYPDRPLAPADDAARRDCLRWVDWAMGPFHEQVTQRIVYE
                     KAAPRFTGAGFSRPPDMNVIRAGREELKTALKAIGAAAELSGNLACRETSLGDLAVAA
                     HLSTLDYFGEVPWTDFPAAGEWYVRMKSRPAFRSLLADRVPGQPPVSHYAELDF"
     gene            complement(1058..1789)
                     /gene="mtgA"
                     /locus_tag="VNN98_02260"
     CDS             complement(1058..1789)
                     /gene="mtgA"
                     /locus_tag="VNN98_02260"
                     /EC_number="2.4.1.129"
                     /inference="COORDINATES: protein motif:HMM:TIGR02070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009274 - peptidoglycan-based cell wall
                     [Evidence IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="monofunctional biosynthetic peptidoglycan
                     transglycosylase"
                     /protein_id="HWM60940.1"
                     /translation="MAGRGIENKGIIWPTLWSGRGWLWRLVAVLFLLLVPAPIILLLV
                     FRFLPIPGTPEMLVSLIEGKGTNYAWTDDISPRLERAVIGAEDENFCRHNGFDWASID
                     KAVQDHNRHPNKQVRGASTISQQTARTLFLVPMRSWIRKGLEAYLTVLVEALWPKKRI
                     LDAYLNLVDWGDGIFGAEAAAGAYFGTDAGSLDSAQAARLAAILPNPHKWKAAHPGRY
                     VRRRTANLQGRSTMVVRDGLNFCVK"
     gene            1871..>2161
                     /locus_tag="VNN98_02265"
     CDS             1871..>2161
                     /locus_tag="VNN98_02265"
                     /inference="COORDINATES: protein motif:HMM:NF014703.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0050380 - undecaprenyl-diphosphatase
                     activity [Evidence IEA];
                     GO_process: GO:0016311 - dephosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl-diphosphate phosphatase"
                     /protein_id="HWM60941.1"
                     /translation="MHDILMSIILGVVEGITEFLPISSTAHLLVTERLLGLGADWEAF
                     TVVIQLGAILAVVAIYFQVFWKALIGLPNSAEARRFALGLILALLPSVVAGLA"
BASE COUNT          407 a          682 c          683 g          389 t
ORIGIN      
        1 ccagggcata gaccgaaatg gcggcgcggt ccttttgcgc caggatcgcc agcgggtctt
       61 cccgcggccc ataattcagg cccagcacga tcacgctttt ggcggcgggc cacatgtctt
      121 gcggattggc gcgccacccc acgcgctccg ccatccagtc catcccgcca tgatggccgg
      181 ccgccagaaa ctcacggagc cgcgcggcat tctccggcac gccccgcgcg tcagcgaaac
      241 gcacaaggtc gaacccttcc gccaacgccc gttcgcgtat ccggttagaa atcgagttcg
      301 gcataatggg aaaccggcgg ctggccggga acgcggtcgg ccaggaggga acggaaggcg
      361 gggcgcgatt tcatccgcac ataccattcg ccggcggcgg ggaaatccgt ccagggcact
      421 tcgccgaaat aatccagggt cgacagatgc gccgccaccg ccagatcgcc caagctggtc
      481 tcgcggcagg cgaggtttcc gctcaattcc gccgccgcgc cgatcgcctt gagcgccgtc
      541 ttcagttctt cgcggccggc gcggatcaca ttcatgtcgg ggggacggct gaaaccggcg
      601 ccggtgaaac gcggcgcggc cttttcataa acgatgcgct gggtcacctg ttcgtggaac
      661 ggtcccatcg cccagtccac ccagcgcagg caatcgcgcc gcgccgcgtc gtcggcgggc
      721 gccagcggac ggtcgggata gtggttctcc agatggtcca ggatcgccca cacgccttcg
      781 gcgcgggtgc cgtccagctc ctggaacacc ggcagggact gcttgctgtc ttcggccaag
      841 accggatcgc aggccacccg tttttccccc accatcaggc gggccaggcg gcaactgggc
      901 gacaacatca aatggaacag gcggcgcatc tgtcctcaag tagcgaagcg ataggacata
      961 agaaaagtcc tcaagtagcg aagcgatagg acataagaaa agtcctcaag gtgcgaagcg
     1021 gtaggacata aataaggagg cgttgtaagc gagactttta cttaacgcaa aagttcagtc
     1081 cgtcccgcac caccatggtg ctgcggccct gcaaattggc ggtgcggcgg cggacatagc
     1141 ggccgggatg cgcggccttc catttgtggg gattgggcag gatggcggcc agccgggcgg
     1201 cctgggcgct atccagcgat ccggcgtcgg ttccgaaata ggcgccagcc gcggcctcgg
     1261 ccccgaaaat gccgtcgccc cagtccacta gattcaaata ggcatccagg atgcgtttct
     1321 tgggccaaag cgcctcgacc agcacggtca gataggcttc cagccccttg cgaatccagc
     1381 tgcgcatcgg caccaggaac aaggtgcgcg cggtctgttg ggagatggtg ctggcgcccc
     1441 gcacctgctt attcgggtgg cggttatggt cctgcaccgc cttgtcgata ctggcccagt
     1501 caaagccgtt atggcggcag aaattctcgt cctcggcccc gatcaccgcc cgttccagcc
     1561 ggggtgagat atcgtcggtc caggcatagt ttgtaccctt gccttcgatc aggctgacca
     1621 gcatttccgg tgtgccggga atgggcagga agcggaagac cagcagcaga ataatggggg
     1681 cggggaccag caggaggaac aggacggcga caagccgcca cagccagccg cgccctgacc
     1741 atagagtggg ccaaatgatc cccttatttt cgattccccg gcccgccatg cgtcagcata
     1801 acaattttta taagatgcgc gaagcggtgc gcgatgctac ctctttgccg ccaacaaccg
     1861 agataagccc atgcacgata tcttgatgtc catcatcctg ggcgtggtcg aaggcatcac
     1921 cgaattcctg cccatttcct ccaccgccca tctgctggtg acggaacgcc tgctgggcct
     1981 gggcgcggac tgggaggcct ttacggtggt gatccagttg ggcgcgatcc tggcggtggt
     2041 ggcgatttat tttcaagtct tctggaaggc gctgatcggc ttgcccaatt cggccgaggc
     2101 gcgccgcttc gcgctggggc ttattctcgc tctgctgccg tcggtggtgg cggggctggc
     2161 g
//
LOCUS       DATMDK010000114         4885 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1201597,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000114 DATMDK010000000
VERSION     DATMDK010000114.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 4885)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4885)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4885
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1201597"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(228..629)
                     /locus_tag="VNN98_02270"
     CDS             complement(228..629)
                     /locus_tag="VNN98_02270"
                     /inference="COORDINATES: protein motif:HMM:NF013540.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HWM60942.1"
                     /translation="MPKKQANPIDIQVGNRVRIRRMLIGMSQERLGDLLGLTFQQVQK
                     YEKGVNRIGAGRLFEVSRILNVPIDFFYEGVSTQPGASEPEGAPPVMEFVSSGEGLQL
                     SLAFMKIKDAKVRKRVLDLVKSLAEDEEQKN"
     gene            complement(716..2269)
                     /gene="lnt"
                     /locus_tag="VNN98_02275"
     CDS             complement(716..2269)
                     /gene="lnt"
                     /locus_tag="VNN98_02275"
                     /inference="COORDINATES: protein motif:HMM:TIGR00546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0016410 - N-acyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006497 - protein lipidation [Evidence
                     IEA];
                     GO_process: GO:0042158 - lipoprotein biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="apolipoprotein N-acyltransferase"
                     /protein_id="HWM60943.1"
                     /translation="MKALIPAGDWTIGLTGWRRLLLAFAAGAVSATGFAPLEFIPALL
                     LAYAVLVLLLDGADSGPGPVRRAAAVGWVFGFGQFLVGLHWIVYAFLIYPGTTLWELP
                     FALFLPAGLALFSALGCAAAMVFWQDGPARLFVFAIAMAATEWLRGHLFTGFPWNLSG
                     YGWGASLALLQSASLMGAYGLSFLTILLGASLAELASKRWRIAAAMLLLFAALWGYGV
                     YRLAVTPLQDVPGVRLRLVQPNIPQAEKYVRRLILRNWRRLFDLTLQPPREGGKAPTY
                     IIWPEAATGFPVARSPGALDQIGLLTARGQTLITGSDRVLRDEQGGIIAYNSLYLFGP
                     GGALPLVYDKFHLVPFGEYLPFASLLNRIGINQFTVGSGFRSGDHHHVLNAGIAPPMT
                     PLICYEVIFPHAVIYPGAPRPGWLVNITDDSWFGPWAGPHQHFLIARVRAIEEGLPIA
                     RAANTGISAVIDGNGRVRALAGLNKVGVIDAPLPRALAPPLYARFGDLVFLLLLVTAA
                     LAAFALSRR"
     gene            complement(2266..3147)
                     /locus_tag="VNN98_02280"
     CDS             complement(2266..3147)
                     /locus_tag="VNN98_02280"
                     /inference="COORDINATES: protein motif:HMM:NF015436.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hemolysin family protein"
                     /protein_id="HWM60944.1"
                     /translation="MSDHPLKRLIRKITGQDADATAIRESLEEVIEESERESPALSAQ
                     ERVMMGNLLKFGELKLRDIMVPRAEIVAVDESIGLGELLKMFREAQHSRLPVFRETLD
                     DPTGLIHVKDVMGLLEPEPDGAYCLSPHARITALRRPILFAPPSMRALDLLLKMQASH
                     THLALVIDEYGGTDGLVSIEDIIEEIVGDIADEHDEDAAVLKPDGDGVIADARMDLDD
                     FKEQTGHDLMVDDGEDEIERDIDSLGGLVVSLLGRVPQRGEIIAHPDGTEFQVLEADP
                     RRVRKLRVTLPKARAKE"
     gene            complement(3144..3605)
                     /gene="ybeY"
                     /locus_tag="VNN98_02285"
     CDS             complement(3144..3605)
                     /gene="ybeY"
                     /locus_tag="VNN98_02285"
                     /inference="COORDINATES: protein motif:HMM:TIGR00043.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004540 - RNA nuclease activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0042254 - ribosome biogenesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA maturation RNase YbeY"
                     /protein_id="HWM60945.1"
                     /translation="MSGITLLIEDSKWRSHRGLQARLKTAAEAAAKAAKLKGGFTILL
                     ANDKRLRGLNRDFRGKDKPTNVLSFPADGAYRGDIAIAYGVTSKEAKAVKKSFADHAV
                     HLAVHGVLHLAGYDHDVPKDAKIMEPLEVKILARLGIADPYAPTSLKDAPQ"
     gene            complement(3602..4540)
                     /locus_tag="VNN98_02290"
     CDS             complement(3602..4540)
                     /locus_tag="VNN98_02290"
                     /inference="COORDINATES: protein motif:HMM:NF014605.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PhoH family protein"
                     /protein_id="HWM60946.1"
                     /translation="MSAKKNTLTLEFPDNRLLMALSGPHAKHLARIEQKLNVGIDMRG
                     NLVAIDGKERDRAGSILRALYTRLEAGESITLAEVDAEIRFTDAGQVQGPGAIKTASS
                     RAVRPRTPAQAAYLEMMRQSPLTFGIGPAGTGKTYLAAAFAAHMLYEKRVERLILSRP
                     ALEAGERLGFLPGDLKEKIDPYLRPLHDALFDVLGAAAGRLMEQGVIEVAPLAFMRGR
                     TLTRAFVILDEAQNTTPAQIKMALTRLGEDSHMVVTGDPSQSDLPGGRALGLNEALSF
                     LEGVEGVGVTRFAEKDVVRHPLVARIVAAYNSRSKS"
     gene            complement(4537..>4885)
                     /locus_tag="VNN98_02295"
     CDS             complement(4537..>4885)
                     /locus_tag="VNN98_02295"
                     /inference="COORDINATES: protein motif:HMM:NF014047.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="TRAM domain-containing protein"
                     /protein_id="HWM60947.1"
                     /translation="VRDIGYATAFSFKYSKPPGTPAASLRKQIPEDVKAARLDMLQKL
                     LLSQQYAFDDSKIGKLLPVLFEKSAREAGRIMGRTPFSQPVHVQASAELIGTIADVRI
                     TRRTANSLHGTLV"
BASE COUNT          939 a         1574 c         1505 g          867 t
ORIGIN      
        1 aggtggcggc ggtgtatttg tagatggtca tggcagggat gctgccatga ccattgcgac
       61 gggcgctagt gtcctgaacc agaagttcgc accattagtg tcatccgccg cgaatgcggc
      121 ggacccaggt gaaaccctgc atcgccgctg cgtgtgtcag ctgggtggcc cgcattcgcg
      181 ggccatgaca tccttgtttg aacacaatca acttctgatt ccggactcta gttcttctgt
      241 tcttcgtcct cggccagact cttcaccaaa tccagcacgc gcttgcgcac cttggcgtcc
      301 ttgatcttca tgaaggccag cgaaagctgc agcccttcgc cgctggagac gaactccatc
      361 accggcggcg cgccttccgg ctcgctggcg ccgggctggg tgctcacgcc ttcgtaaaag
      421 aaatcgatcg gcacattgag gatacgcgag acttcaaaca gccgcccggc gccgatacgg
      481 ttgacgccct tttcatattt ttggacctgc tgaaaggtta gccccaacag gtcgcccagc
      541 cgctcctggc tcatgccgat cagcatgcgc cggatgcgca cccgattgcc gacctggatg
      601 tcgatgggat tggcttgctt cttgggcacg tgtttctcaa atcaatttgc cggtcgggaa
      661 cttgccccat ctgtcgtcca actgaaacaa ttaatttcgc cgcaggaccc gggacttaac
      721 ggcggctcag cgcaaacgcg gctaaggcgg cagtaaccaa aagcagcaga aatacaagat
      781 cgccaaaccg tgcatagagc ggcggcgcca gcgcccgggg cagcggcgca tcgatcacgc
      841 ccaccttgtt caagcccgct agcgcccgca cgcggccgtt gccgtcgatc accgcgctga
      901 tgccggtatt ggcggcgcgc gcgatgggca agccttcttc gatagcgcgc acccgggcga
      961 tcaggaaatg ctgatgcggc ccggcccaag gcccgaacca ggaatcatcg gtgatgttca
     1021 ccagccagcc ggggcgtggt gcccctggat atatcaccgc gtgcgggaag atcacttcat
     1081 aacaaatgag aggcgtcatg ggcggcgcga tacccgcatt cagcacatgg tgatgatcgc
     1141 cggatctgaa accggaaccc acggtgaact ggttgatgcc gatgcgattg agaagacttg
     1201 cgaacggcaa atattcgccg aacggcacca gatggaactt gtcgtagacc agcggcagcg
     1261 cgccgccggg gccaaacagg tacaggctgt tataggcaat gatgccgccc tgctcatcgc
     1321 gcagcacccg gtccgagccg gtgatcaggg tctggccccg cgccgtcagc aatccgatct
     1381 ggtccagcgc gccaggcgac cgcgccaccg gaaagccggt ggccgcttcc ggccatatga
     1441 tgtaggtggg cgctttgccg ccctcccggg gcggctgaag cgtgagatcg aacaatcgcc
     1501 gccagttgcg caggatcagg cggcggacat atttttccgc ctgcgggata ttgggttgta
     1561 ccagcctgag ccttacaccc ggcacgtcct gcaggggtgt aacggcgagg cgatacacgc
     1621 cataacccca cagcgccgcg aacagcaaca gcatcgccgc cgctatgcgc caacgcttcg
     1681 aggccagttc cgccaacgac gcacccagca ggatggtgag gaaggagagg ccgtaagctc
     1741 ccatcaggct ggccgattgc agcagcgcca gcgacgcgcc ccagccatag ccggacaggt
     1801 tccagggaaa accagtgaag agatggccgc gcagccattc cgtggcagcc atcgcaatcg
     1861 cgaagacgaa aagccgggcc gggccgtcct gccagaaaac catcgccgcc gcgcagccca
     1921 gggcgctgaa cagcgccagc ccggcaggca agaacagcgc gaaaggcaat tcccacaacg
     1981 tggtgccggg atagatcagg aaggcgtaaa caatccaatg caggccgaca aggaattgtc
     2041 caaagccgaa gacccagccc acagcggcgg cgcggcgcac cggccccggt ccgctatcgg
     2101 cgccatccaa cagaagcacc agcacggcat aggccaggag cagcgcagga ataaattcaa
     2161 gcggcgcgaa gccggtggcc gacacggcgc ccgccgcgaa ggccagcagc agacggcgcc
     2221 agccggtaag gccgatggtc caatcgccgg ctgggatcaa cgccttcatt ccttggcacg
     2281 cgctttcggc aaggtgacgc gcagcttgcg cacccggcgc ggatcggcct ccagcacctg
     2341 gaattcagta ccgtcaggat gggcgataat ctcgccgcgc tgcggcaccc gccccagcag
     2401 cgacaccacc agaccgccca ggctgtcgat gtcccgttcg atctcgtctt cgccgtcgtc
     2461 caccatcagg tcgtgaccgg tctgctcctt gaagtcatcc aggtccatgc gggcatcggc
     2521 gatgaccccg tcgccgtccg gcttgagcac ggcggcatcc tcgtcatgtt cgtcggcgat
     2581 gtcgcccacg atttcctcga taatgtcctc gatggaaacc agcccgtcgg tgccgccata
     2641 ttcgtcaatc accagcgcca gatgggtgtg cgaggcctgc atcttgagca acagatccag
     2701 cgcccgcatc gacggcggcg cgaacaggat cgggcggcgc agggcggtga tgcgcgcatg
     2761 aggcgacagg caataggcgc cgtccggttc gggttccagc agacccatca cgtctttcac
     2821 atggatcagg ccggtgggat catccagggt ttcgcgaaag accggcagac gggaatgttg
     2881 cgcctcgcgg aacatcttga gcaattcgcc caggccgatg ctttcgtcca ctgccacgat
     2941 ctcggcgcgc ggcaccatga tatcgcgcag cttgagttcg ccgaatttga gcaggttgcc
     3001 catcatcacc cgctcctgcg ccgacagggc gggcgactcg cgctcgcttt cctcgatcac
     3061 ctcttccagg ctttcgcgga tggcggtggc gtccgcatcc tggccggtaa ttttccggat
     3121 cagacgtttg agggggtgat cgctcattgc ggcgcgtctt taagcgaagt gggtgcataa
     3181 ggatcggcga tccccagccg cgccaggatt ttcacttcca gcggctccat tatctttgcg
     3241 tccttgggga cgtcatgatc atagccggcc agatgcagca cgccatgcac cgccagatga
     3301 acggcatggt cggcaaagga ttttttcacc gccttcgctt ctttgctggt gacgccatag
     3361 gcgatggcga tgtcgccgcg ataagcacca tctgcgggaa aggacagcac attggtcggc
     3421 ttgtccttgc cgcgaaagtc gcggttcaag ccgcgcagcc gcttgtcatt ggccagcaaa
     3481 atcgtgaacc cgcccttcaa ttttgccgcc ttggctgccg cctcggcggc cgttttcagc
     3541 cgcgcctgca gcccgcgatg cgaccgccac ttggaatctt cgatcagcag ggtaatcccg
     3601 ctcatgattt gctgcggcta ttataggcgg caacgatgcg cgcgacgagg ggatggcgca
     3661 ccacgtcttt ttccgcgaat cgggtgacgc cgacgccttc cacgccttcc aggaaggaaa
     3721 gcgcctcatt caggcccagc gcccggccac ccggcaggtc gctttgcgac ggatcgccgg
     3781 tgacgaccat atgactgtcc tcgcccagcc gggtcagggc catcttgatc tgggccgggg
     3841 tggtgttctg cgcttcgtcc aggatgacaa aggcccgcgt cagggtgcgg ccgcgcatga
     3901 aggccaaagg cgccacttcg atcacgccct gctccatcag ccgcccggcg gcggcgccca
     3961 gcacatcgaa cagcgcgtca tggagcggcc tcaaataagg gtcgatcttc tctttcaggt
     4021 caccgggcag aaagcccagc cgttcgccgg cttccagcgc ggggcgcgac aggatcaggc
     4081 gctccacccg cttctcataa agcatatgag cggcgaaggc ggcggccaga taggtcttgc
     4141 cggtgccggc gggcccgatg ccgaaggtca gcggagactg ccgcatcatc tccagataag
     4201 ccgcctgggc cggggtgcgc ggccgtaccg cccgcgagga agccgtcttg atcgcgccgg
     4261 gcccctgaac ctgaccggcg tcggtgaaac ggatttccgc atccacctcc gccagggtga
     4321 tgctttcgcc tgcttccagc ctggtataga gcgcgcgcag gatggacccg gcgcggtcgc
     4381 gttccttgcc gtcgatcgcc accagattgc cgcgcatgtc gatgcccaca ttcagcttct
     4441 gctcgatgcg ggccagatgc ttggcgtgcg ggccggacag cgccatcaag agccggttgt
     4501 cgggaaattc caacgtcagc gtgttcttct tggcgctcac accagagtcc cgtgaagact
     4561 gttggcggtg cggcgcgtga tccgcacatc agctatggtg ccgataagct cggcggaggc
     4621 ctgcacatgc accggctgcg aaaagggcgt gcggcccatg atccgtccgg cctcgcgggc
     4681 ggatttctcg aacagcaccg gcagcagctt gccaattttc gaatcatcga aggcatactg
     4741 ctgcgacagc agcaacttct gcagcatgtc cagccgcgcc gctttgacgt cttcaggaat
     4801 ctgcttgcgc agcgaggcgg cgggtgtgcc gggcggcttg gaatatttga aggaaaaggc
     4861 ggtggcatag ccgatgtcgc gcacc
//
LOCUS       DATMDK010000115         2389 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1201680,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000115 DATMDK010000000
VERSION     DATMDK010000115.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2389)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2389)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2389
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1201680"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            70..1527
                     /locus_tag="VNN98_02300"
     CDS             70..1527
                     /locus_tag="VNN98_02300"
                     /inference="COORDINATES: protein motif:HMM:NF014218.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NCS1 family nucleobase:cation symporter-1"
                     /protein_id="HWM60948.1"
                     /translation="MSIKPDGADADLWNDDLAPTTPHQRNWSWKNFSALWVGMVACIP
                     TYMLASGLISSGLSPAQAILLVFAGNVIVLIPMLLTGAMGTAYGIPFPVLLRSSFGPR
                     GAQAAALARAFVACGWFGINTWIGGSAIYGVVNLLTHNALAGAVLPVLGINAGQTLCF
                     VLFWAVHVYFISHGTESIRWLETLAAPFLLAMGLVLLGWAYVNAHGFGAMLGAPSAFG
                     PGSGKEALFWPTVIASLTAMVGFWATLSLNICDFTRFSRSQKDQILGQSIGLPLPMAL
                     VSFISVAVTGATVVIFGKAIWEPTELAAHLGGIGAVLALVVICLCTLTVNMAANVVSP
                     SYDFSNLAPAKISFTGGGYITAAIGLLIFPWRLLESAGTYIFAWLVGYSALLGPIAGI
                     MIADYFIVRRRALDVPDLFRHGGRYDGSSGWNLKGILALALGVAPNLPGFLHSVKLVD
                     AVPPLFDTIFTGAWFFGFFISAGVYVVLNGRNKGT"
     gene            1530..>2389
                     /locus_tag="VNN98_02305"
     CDS             1530..>2389
                     /locus_tag="VNN98_02305"
                     /inference="COORDINATES: protein motif:HMM:NF014081.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HWM60949.1"
                     /translation="MSLLIKGGTIVTAERSFVGDVYCEDGIIKAVGDVFGAATEIIDA
                     TGQYVMPGGIDPHTHMELPFMGTVASEDFFSGTAAGFAGGTTMIIDFVIPSPQQNLME
                     AFRAWRGWAEKAAGDYSFHVAITWWDKSVHDDMAALVREEGVNSFKHFMAYKNAIMAT
                     DETMYHSFRRARELGAIVTVHAENGELVYQLQQELLKQGINGPEGHPLSRPPAAEGEA
                     AHRAIKFAEVIDVPVYVVHTSTKDALGVITLAQGNGQRVYGEVLAGHLLIDDSVYQSQ
                     DWAFAAAHVMS"
BASE COUNT          376 a          747 c          764 g          502 t
ORIGIN      
        1 cgtgcgcgac aaatggcaat tcttccgcga ccgccggccg gaaacctatg gcccgctggt
       61 ggcgcaggaa tgagcatcaa gccggacggc gccgacgccg atctgtggaa tgacgacctg
      121 gcgcccacca cgccgcacca gcgcaactgg agctggaaaa acttttcggc gctatgggtc
      181 ggcatggtgg cctgtattcc cacctacatg ctggccagcg gtctgatctc gtcgggcctg
      241 tcgccggccc aggccatcct gctggtcttt gccggaaacg tgatcgtgct aatcccgatg
      301 ctgctgaccg gcgcgatggg caccgcttat ggcattccgt ttccggtgct gctgcgctcc
      361 agcttcgggc cgcgcggcgc ccaggccgcg gcgctggcgc gcgccttcgt cgcttgcggc
      421 tggttcggca tcaacacctg gattggcggc tcggcgattt atggcgtggt caacttgctc
      481 acccacaatg cgctggcggg cgcggtgctg cctgtcctgg gcatcaatgc cgggcagacg
      541 ctgtgcttcg tgctgttctg ggcggtgcat gtctatttca tcagccatgg caccgaaagc
      601 atccgctggc tggagacctt ggcggcgccc tttctgctgg cgatgggcct ggtgctgctg
      661 ggctgggcct atgtcaacgc ccacggtttc ggcgccatgc tgggggcgcc ctccgccttc
      721 ggccccggca gcggcaagga ggcgctgttc tggcccaccg tcatcgccag cctgaccgcc
      781 atggtgggct tctgggcgac gctgtcgctc aacatctgcg acttcacccg cttttcgcgc
      841 agccagaagg accagattct gggccagagc atcggtctgc cgctgccgat ggcgctggtg
      901 tcgttcatca gcgtggcggt gaccggcgcc acggtggtga ttttcggcaa ggcgatctgg
      961 gagccgaccg agctggcggc gcatctgggc ggcatcggcg cggtcctggc gctggtggtg
     1021 atctgcctgt gcaccctgac ggtcaatatg gcggcgaatg tggtgtcgcc ttcctatgac
     1081 ttttccaact tggcgcccgc gaagatttcc ttcaccggcg gcggctatat caccgccgcc
     1141 atcggcctgc tgatctttcc ctggcggctg ctggaaagcg ccggcaccta tatctttgcc
     1201 tggctggtgg gttattccgc gctgctcggt cctatcgccg gcatcatgat cgcggactat
     1261 ttcatcgtcc gccgcagggc gctggatgtc cccgacctgt tccgccacgg cggccgttat
     1321 gacggcagca gcggctggaa cctgaaaggg attctggcgc tggcgctggg cgtggcaccc
     1381 aacctgcccg gtttcctgca ttcggtgaaa ctggtggacg cggtgccgcc gctgttcgac
     1441 actattttca ccggcgcctg gtttttcggc ttctttatct ctgccggggt ttatgttgtg
     1501 ttgaacgggc gcaacaaggg aacctaggca tgtcgctgct gatcaaaggt ggaaccatcg
     1561 tcaccgccga gcgcagcttt gtgggcgacg tctattgcga ggacgggatc atcaaggcgg
     1621 tcggggatgt tttcggcgcc gctaccgaga tcatcgacgc caccggccaa tatgtcatgc
     1681 ccggcggcat cgatccccac acccatatgg aactgccctt tatggggacg gtggcctcgg
     1741 aggatttctt ttctggcacc gccgccggtt tcgccggcgg caccaccatg atcatcgatt
     1801 tcgtcatccc ctcgccgcaa cagaatctga tggaggcctt tcgcgcctgg cgcggctggg
     1861 ccgaaaaggc ggcgggcgat tacagtttcc atgtcgccat cacctggtgg gacaagtcgg
     1921 tccatgacga catggcggcg ctggtgcgcg aggaaggcgt caacagcttc aagcatttca
     1981 tggcttacaa aaatgccatc atggcgacgg acgagaccat gtatcactcc ttccgccgcg
     2041 cccgggagtt gggcgccatc gtcacggtcc atgccgaaaa tggcgagctg gtctatcaat
     2101 tacagcagga attgttgaaa cagggcatca acgggccgga aggccatccc ttgtcacggc
     2161 cgccggccgc cgaaggcgaa gccgcccacc gcgccatcaa gttcgccgaa gtgatcgatg
     2221 tgccggtcta tgtcgtgcat acttcgacca aggacgcgct gggcgtgatc actctggccc
     2281 agggcaacgg ccagcgcgtg tatggcgaag tgctggccgg gcatcttttg atcgatgaca
     2341 gcgtctatca aagccaggat tgggctttcg ccgccgccca tgtgatgtc
//
LOCUS       DATMDK010000116         3558 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2571488,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000116 DATMDK010000000
VERSION     DATMDK010000116.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3558)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3558)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3558
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2571488"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2154
                     /locus_tag="VNN98_02310"
     CDS             <1..2154
                     /locus_tag="VNN98_02310"
                     /inference="COORDINATES: protein motif:HMM:NF024753.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-binding-like beta-propeller repeat protein"
                     /protein_id="HWM60950.1"
                     /translation="RKSMLQLGAAAIVSAALGTVAFGPSAMGQGAAGPFTQAQVDAGR
                     QAFADNCAACHLADLAGTNDAPALAGSAFIGAWGKRTTAQLYSKIHTTMPLGRGGSLD
                     DATYANLVAYILRANGATPGTTAFTPTASVAIGSIANGQMPAGLNTTRTANGQATVPP
                     RRPDPGRFSLPTKFGLSLKGNIQNYVPVTDEMLRNPPDGDWLMFRRNYQGWSYSPLKE
                     IDTGNVSKLTLKWMWSMPENGTMEITPMVHNGIIYVWGTGNTIQALNGKTGELLWENR
                     IGPAPRAPGPGPSTEETRALGFWGNNLYVNTPYGMVYALDARTGEEIWKNNIVDYKPG
                     IGGSTGGVIVINGKVLVGMTNCGRPNNDDHCYISAYDAKTGKRDWKFVTVALKGDPGG
                     DSWGDLPDNMRKGAETWIAGTFDPDLNTTYWGVAQAKPWRRDLRGSAAGDTNYANSTI
                     ALDPDTGKLKWFFQHGPGESLDLDEVYERVLINHGEQKTLMTIGKAGILWKLDRVTGK
                     FLAAKETVFQNIWSAIDKNGRPAYRKDIVDQKVDQWLSSCPGPEGGHDWQATSYHQPS
                     DTLIIPLSQSCVFMLGNGSQTYFEMPGSDGNMGRLSAYRTNDMKPLWSFQQRAPFLTG
                     VISTAGNVAFVGDFDRVFRAVDVRTGNTLWKIRLGTTVQGFPVTFSVDGKQYVAVTTG
                     LGGGSPEAKPSTMLTEVHRPPNGYNLFVFGLPDDK"
     gene            2301..2945
                     /locus_tag="VNN98_02315"
     CDS             2301..2945
                     /locus_tag="VNN98_02315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015667319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF47 domain-containing protein"
                     /protein_id="HWM60951.1"
                     /translation="MLRFFQALMPREEQFFAHFNAHARILVEGAVALRDLLEGGPGVA
                     DACRRIIAHENQADAIARDVLLGVRRSFITPFDRGDIKDLIGLLDDAIDQMQKTAKAI
                     TLFEVSSFELQMRQMADIILRCAELTVEAVGLLGSMRDSQARINAIAEEITRLEEQAD
                     DLNDHGIKALYLKHKGSDAMGFIVGNEIYDHLEKVVDRFEDVANRISGIVIEQV"
     gene            2945..>3558
                     /locus_tag="VNN98_02320"
     CDS             2945..>3558
                     /locus_tag="VNN98_02320"
                     /inference="COORDINATES: protein motif:HMM:NF013543.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0006817 - phosphate ion transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic phosphate transporter"
                     /protein_id="HWM60952.1"
                     /translation="MLLIAVLIAIALIFDFLNGLHDAANSIATIVSTRVLSPRYAVAW
                     AAFFNFIAFAVFGLHVAATIGTGIVSPLIIDDQVIFGALMGAIVWNVVTWLAGIPSSS
                     SHALIGGLVGAGLCKGGWKAIVWSGLSKTAAAIVLSPATGFILALLLILLVAWTFLKA
                     APLWVDKVFRHVQFVSASAYSLGHGGNDAQKTMGIIAALLFAHG"
BASE COUNT          668 a         1185 c         1065 g          640 t
ORIGIN      
        1 agaaaaagta tgctgcagct gggcgccgcc gcgattgtga gcgccgcgct gggcaccgtg
       61 gcttttggcc cgtctgccat gggccagggc gcggcgggcc cgttcaccca agcccaggtg
      121 gacgccggcc gtcaggcttt cgccgacaat tgcgcggcct gccatctggc cgatctggcg
      181 ggcaccaacg acgcgcccgc gctggcgggc tccgccttca tcggcgcctg gggcaagcgc
      241 accaccgccc agctctacag caagatccac acgaccatgc ccttgggacg cggcggcagc
      301 ctggatgacg cgacctacgc caatctcgtc gcctatatcc tgcgcgccaa tggcgcgacg
      361 ccgggcacca ccgccttcac gcccaccgcc tcggtcgcta tcggctccat tgccaacggc
      421 caaatgccgg caggcctcaa cactacccgc accgccaatg gccaggccac ggtgccgccc
      481 cggcgtcccg acccgggccg cttcagcctg ccgaccaagt tcggcctgag cttgaagggc
      541 aatatccaga actacgtccc cgtcaccgac gagatgctgc gcaatccacc ggacggcgat
      601 tggctgatgt tccgccgcaa ctatcagggc tggagctaca gtccgctgaa agaaatcgat
      661 accggcaatg tctccaagct gacgctgaaa tggatgtggt ccatgccgga aaacggcacc
      721 atggaaatta cccccatggt ccataacggc atcatctatg tctggggcac cggcaatacc
      781 atccaggcgc tgaacggcaa gaccggcgag ttgttgtggg aaaaccgcat aggaccggcg
      841 ccgcgcgcgc ccggccccgg cccgtccacc gaggaaaccc gcgccctggg cttctggggc
      901 aataatctct acgtcaacac gccttacggc atggtctatg cgctggacgc gcgcaccggc
      961 gaggaaatct ggaagaacaa tatcgtcgac tacaagccgg gcatcggcgg ttcgaccggc
     1021 ggcgtcatcg tcatcaacgg caaagttctg gtgggcatga ccaattgcgg ccggcccaat
     1081 aacgatgatc actgctacat cagcgcctat gacgccaaga ccggcaagcg cgactggaag
     1141 ttcgtcaccg tggcgctgaa aggtgatccc ggcggcgaca gctggggcga cctgcctgac
     1201 aatatgcgca agggcgccga gacctggatc gcgggcacct tcgatcccga tctcaacacc
     1261 acctattggg gcgtggcgca ggccaagccg tggcggcgcg acttgcgcgg ttcggccgcg
     1321 ggcgacacca actatgccaa ttccaccatc gcgctggatc ccgataccgg caagctgaaa
     1381 tggttcttcc agcacggtcc cggcgagtcg ctcgacctgg acgaagtcta tgagcgcgtg
     1441 ctgatcaatc acggcgaaca gaagaccttg atgaccatcg gcaaggccgg catcctgtgg
     1501 aagctggaca gagtcaccgg taaattcctt gccgccaagg agacggtgtt ccagaacatc
     1561 tggagcgcga tcgacaagaa tggccgcccc gcctaccgca aggatattgt ggaccagaag
     1621 gtggaccagt ggctgtcctc ctgccctggc cccgaaggcg gccatgactg gcaggcgacc
     1681 agctatcacc agcccagcga caccttgatc attcccttgt cgcagagctg tgtgttcatg
     1741 ctgggcaacg gctcgcagac ctacttcgag atgccgggca gcgacggcaa tatgggccgg
     1801 ctgtcggcct atcgcaccaa tgatatgaag ccgctctggt cgttccagca gcgcgcgccc
     1861 tttctgaccg gcgtgatctc gaccgcgggc aatgtcgcct ttgtcggtga tttcgaccgc
     1921 gtcttccgcg cggtggatgt gcgcaccggc aacacgctgt ggaagatcag gctgggcacc
     1981 acggtgcagg gcttccccgt caccttcagc gtcgacggca aacagtatgt cgccgtcacc
     2041 accggcctgg gcggcggcag ccccgaggcg aagcccagca ccatgctgac cgaggttcat
     2101 cgcccgccca acggttacaa ccttttcgtg tttggcttgc cggacgacaa ataaaggccg
     2161 aaacggcccg gatcgtgaca ggggcgctgc gccagtggcg cccctaatca tttgtatttg
     2221 ttgatttttt cacagagatc accctccgct tgacgcccgc aggcgggcat agcaagcaat
     2281 ggcccaaaac ggggtcccaa gtgctgcgct ttttccaggc tttgatgccg cgcgaagagc
     2341 aattcttcgc ccatttcaat gcccatgccc gcattctggt ggagggcgcc gtcgccttgc
     2401 gcgatctgtt ggaaggcggc cccggcgtgg ccgatgcctg ccgccgcatc atcgcccatg
     2461 agaaccaggc cgatgccatc gcccgcgacg tcctcttggg ggtgcgccgc agcttcatca
     2521 cccccttcga ccgcggcgat atcaaggacc tgatcggcct gctcgacgac gccatcgacc
     2581 agatgcagaa gaccgccaag gccatcaccc tgttcgaggt ttcaagcttc gaactgcaga
     2641 tgcgccagat ggccgacatc atcctgcgct gcgccgaact gacggtggaa gccgtgggcc
     2701 tgctgggcag catgcgcgac agccaggcgc gcataaatgc gatcgccgag gagatcaccc
     2761 gcctggagga acaggccgac gacctcaacg atcacggcat caaggcgctg tatctcaaac
     2821 ataaaggcag tgatgccatg ggcttcatcg tcggcaatga aatctacgat catctcgaga
     2881 aggtagtgga ccgcttcgag gatgtcgcaa accgcatcag cggtatcgtc atcgagcagg
     2941 tctgatgctg ctgatcgcgg tcctgatcgc catcgccttg atcttcgact ttctcaacgg
     3001 cctgcatgac gcggccaatt ccatcgccac catcgtttcc acccgcgtgc tgtcgccccg
     3061 ctatgccgtg gcctgggcgg ccttcttcaa tttcatcgcc ttcgccgtgt tcgggctgca
     3121 tgtcgccgcc accatcggca ccggcatcgt ctcgcccctg atcattgatg accaggtgat
     3181 cttcggggcg ctgatgggcg ccattgtgtg gaacgtggtg acctggctgg cgggcattcc
     3241 ttcctcctcc tcccacgccc tgatcggcgg gttggtgggc gccggcctgt gcaagggcgg
     3301 ctggaaggcg atcgtctggt cgggcctgag caagaccgcc gccgccatcg tgctgtcgcc
     3361 cgccaccggt ttcatcctcg ccttgctgct gatcctgctg gtggcctgga ctttcctcaa
     3421 agcggcgccg ctgtgggtgg acaaggtctt ccgccatgtc cagttcgttt cggccagcgc
     3481 ctacagcctg ggccatggcg gcaacgacgc gcagaaaacc atgggcatca tcgccgccct
     3541 gctgttcgcg cacggaat
//
LOCUS       DATMDK010000117         2348 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_741936,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000117 DATMDK010000000
VERSION     DATMDK010000117.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2348)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2348)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2348
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_741936"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            329..1240
                     /locus_tag="VNN98_02325"
     CDS             329..1240
                     /locus_tag="VNN98_02325"
                     /inference="COORDINATES: protein motif:HMM:NF024950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HWM60953.1"
                     /translation="MAISFANKVAIITGAGGGLGRAHALALAKLGAKVVVNDLGGALD
                     GSGGNSAASEKVVAEIVAAGGEAIANGASVSDDAGVAHLVKQTMDKWGRIDVLIANAG
                     ILRDKSFAKMELKDFEAVMTVHLMGTVKPCKAVWEIMKAQGYGRIVVTTSSTGLYGNF
                     GQTNYGAAKLSLVGLMNSLKLEGAKDNIKVNAVCPVAATRMTEALMPPAVLEMLKPEF
                     VSPAVVYLASDEAPTGVILTAAAGAFAAAQLVETDGVNLGQDATADDIAAHFAQISDW
                     TTAKHYGQGGEQSAKFLARVQEKPLLG"
     gene            1411..2004
                     /locus_tag="VNN98_02330"
     CDS             1411..2004
                     /locus_tag="VNN98_02330"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012792.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HWM60954.1"
                     /translation="MQGVLLCLTLLSMDDLALSVRTARPEDAADLARIYIESWQDTYA
                     GVISHTLLGAMSRKSHTARWQATIRGADRNSGTVLVAEDVNYGAIGLCSLGAARDGGV
                     GFEGEIYTLYVDPSFLGRGTGRALLAGAFESFKDRKLRSCLIWAHARNNACFFYEALG
                     GRRVATRTTRLMGELTPEIGFGWKRLATKKQTRSIQS"
BASE COUNT          434 a          711 c          758 g          445 t
ORIGIN      
        1 cgcgtttttc gactctgatc tggtggctgg aaccgctttg ccttgtcatc atctgcgtgc
       61 tgtggggcgg cttgctggcc cagttcatcg aactgcccgt cgcggcctgg ctgcgcagcc
      121 gctttggccg ccgccttgac ccgcaaagca tccccacgcc atcgtaagct gcatctcaac
      181 ggagcgtcgg cgtgagccgg agcgaccatc aaaaaagagc tcaggagttc cccatggcca
      241 tttccttcac cggcaaggtt gcaattgtta caggcaggag cgtcggcgaa gccggagcga
      301 ccatcaaaaa atgcggacag gtgctctaat ggcaatttcg ttcgctaaca aggttgcaat
      361 tattacaggc gccggcggcg gattgggacg ggcgcatgcc ctggcgctgg cgaaactggg
      421 cgccaaggtg gtggtcaacg acctgggcgg cgcgctggac ggcagcggcg gcaattccgc
      481 ggcatccgaa aaagtggtgg ccgaaatcgt cgcggcgggg ggcgaagcca tcgccaatgg
      541 cgcctcggtc agcgacgatg ccggcgtggc ccatctggtc aagcagacca tggacaaatg
      601 gggccgcatc gatgtgctga tcgccaatgc cggcatcctg cgcgacaaga gcttcgccaa
      661 gatggagctg aaggatttcg aggcggtgat gacggtgcac ctgatgggca cggtcaagcc
      721 ctgcaaggcg gtgtgggaga tcatgaaggc gcaaggctac ggccgcatcg tggtcaccac
      781 atcgtccacc ggcctgtacg gcaatttcgg ccagaccaac tacggcgccg ccaaactgtc
      841 gctggtgggc ttgatgaatt cgctgaagct ggaaggcgcc aaggacaata tcaaggtcaa
      901 cgccgtctgc ccggtggcag cgacccgcat gaccgaggcc ctgatgccgc ctgcggtgct
      961 ggagatgctc aagcccgaat tcgtttcccc cgcagtggtc tatctggcgt cggatgaggc
     1021 gcccaccggt gtgattctca cggccgcagc cggagcattc gccgccgccc agttggtgga
     1081 gaccgacggg gtcaatctgg gtcaggatgc cacagccgat gacatcgcgg cgcattttgc
     1141 gcagatttcc gattggacca cggccaagca ttatggccag ggcggcgaac agagcgccaa
     1201 gtttctggca cgggttcagg aaaagccgtt gctcggctaa cgtcacttgt tgttacagtt
     1261 tgcgcaggcc gttcgcatgg ctggccgcca tgctcacccc cttcgtgcgc gcagcgcaca
     1321 tggaagggga ggtggtcgta gctggccctc gggccggcga agaccggagg ggttcaatat
     1381 aaaaagtttg catttgcggc gaaatgactc ttgcagggcg ttctgctttg cctcaccctt
     1441 ctgtccatgg acgacctcgc gctgagtgtt cgcactgcgc ggcctgaaga tgccgcggac
     1501 ctcgcacgca tctacattga atcctggcaa gacacttatg cgggcgtgat ttcccatacc
     1561 ctgctgggcg ccatgtcgcg caaaagccat accgcacgct ggcaggccac gatcaggggg
     1621 gccgatcgaa attccggtac cgtgctggtg gcggaagacg tcaattacgg cgcgatcggg
     1681 ctgtgcagct tgggcgcggc gcgcgacggc ggcgtgggct tcgaaggcga aatctatacc
     1741 ctttatgtcg atcccagctt tctgggacgc ggcaccggac gcgccctgct ggccggtgcc
     1801 ttcgagagtt tcaaggaccg caagctgcgc tcctgcctga tctgggcgca tgcccgcaac
     1861 aatgcctgct tcttctacga ggcgctgggc gggcgccgcg tcgccacccg caccacaagg
     1921 ctgatgggcg agttgacgcc ggagatcggt ttcggctgga agcggctggc gaccaagaag
     1981 cagacccgca gcattcagtc ctgattgctc agtcgtgatc gggctgtgtc gtgccgcagt
     2041 cgcagacgat ttccggcggt aagttaagcg gcaggcgcgg gcggcggtga aatccttccg
     2101 acagcgccaa cagcgcccgg gcgcccgtct gcgtcgcttc ccatgtcgcc gcgcccgtcc
     2161 ggtagcattt ccggcaccgc agcacgcgtt cggtgtgctc ctgagccatg cggcaaagtc
     2221 taggccgcaa atccgaaaca tccgttggct acggccatga tttttaagtc agtttgtagc
     2281 taacgcgcgg ttcacaaatc cttgggccgc acgaactcgg caagctttcc ggcgccctgt
     2341 gccacgtc
//
LOCUS       DATMDK010000118         2045 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_522052,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000118 DATMDK010000000
VERSION     DATMDK010000118.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2045)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2045)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2045
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_522052"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            103..408
                     /locus_tag="VNN98_02335"
     CDS             103..408
                     /locus_tag="VNN98_02335"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM60955.1"
                     /translation="MKDVKEALLAITPTGQGDPDAVTCRVPQLLPGSRLPGPEVCKTN
                     HSWAQLRAEGQDISPDGTALIATLSRTRALLALAGTCYSTNPLPAIQSTGPRTSSCY"
     gene            487..1203
                     /locus_tag="VNN98_02340"
     CDS             487..1203
                     /locus_tag="VNN98_02340"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM60956.1"
                     /translation="MELAEGDGMGLICGAASAGALLLSPRQARISYAVTVCDEVEEIR
                     RLIDILGGIDIRDEIVIQYDEPKTPPAMMDYLQALRGARNCGAIVPFALNDDFAAFKN
                     NVKKFCRGDYIFQIDADEYPSAQMLSQIHAILSANAAADVLMVPRINTVSGLTQAHLH
                     KWGWQINAQGWVNFPDPQARIYRNSDSIRWVNRVHETLAGYKILAQVPWVPELALMHP
                     KTIARQERQNSFYERLAKLG"
     gene            complement(1229..>2045)
                     /locus_tag="VNN98_02345"
     CDS             complement(1229..>2045)
                     /locus_tag="VNN98_02345"
                     /inference="COORDINATES: protein motif:HMM:NF013069.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HWM60957.1"
                     /translation="LVPLTAVTKMTASTVPLSVNHAGQIPAVTISFDLAPGKALSDAV
                     SGIRQASEDVGMPDSIQGNFQGTAAAFQDSTKNMGGLLIIAMVVVYIILGILYESFIH
                     PLTILSGLPSAAVGGLLTLWFAHLLFLWGITNSDMSLTLYAFVGMIMLIGIVKKNAIM
                     MIDFAINRQRSDVLIPPEQAIYEAAITRFRPIMMTTMAALMGTLPIAFGSGAGAESRR
                     PLGLCVAGGLLLSQLLTLYITPVIYSYLDRLGGRLQSRKNARRAAGPSIAPAE"
BASE COUNT          418 a          621 c          642 g          364 t
ORIGIN      
        1 ttcgagccgg cgccagtgca acaagacgct gcgcccgttc ctgtcgcacc gaaagctcag
       61 ccggagcagc aagccgttgc cgccgcgtcc gcaggcgcaa ctgtgaagga tgtgaaagaa
      121 gcgctgctgg cgatcacgcc caccggccag ggcgatcccg acgccgtcac ctgccgggtg
      181 ccgcaattgt tgcccggttc acggctgccg ggccccgaag tctgcaagac caaccatagc
      241 tgggctcagc tgcgcgctga gggccaggat atcagcccag acggcaccgc cctgatcgcc
      301 accctgtcgc gcacccgcgc tttgctggcg ctggccggca cttgctacag caccaatccc
      361 ttgcccgcga tccagagtac cggcccgcgc acttcgagct gttactagaa gtgtgatgcg
      421 gccggttgca gaaaacatac cggtgtgtta gaaaaaacta catcggtagt aatataggcg
      481 cggcgtgtgg aactggcgga aggtgacggc atgggcctga tatgtggcgc cgcctctgcc
      541 ggcgctctgc tactgtcgcc gcggcaggcc agaatcagct atgcggtcac ggtatgcgac
      601 gaggtcgagg agattcggcg gcttatcgac attctgggcg gcatcgatat ccgcgacgag
      661 atcgtcatcc agtatgacga acccaaaacg ccgccggcga tgatggatta tctgcaggcc
      721 ttgcgcggcg cgcgaaattg cggggcgatc gtgccctttg ccttgaacga tgacttcgcg
      781 gcattcaaga acaatgtgaa aaaattctgc cgcggagatt atattttcca gatcgatgcg
      841 gacgagtatc ccagcgcaca gatgctgtcg caaatacacg caattttgtc ggccaatgcg
      901 gcagccgatg ttctcatggt cccgcgtatc aatacggtca gcggcctgac ccaggcccat
      961 ctgcacaaat ggggttggca gatcaacgcc caaggctggg tcaactttcc cgaccctcag
     1021 gcccgcatct accgcaacag cgattccata cgttgggtga accgggtgca tgagactctg
     1081 gcgggataca aaattctcgc gcaggtgccc tgggtccccg aactggcgtt gatgcatccc
     1141 aaaaccatcg cgcggcagga acggcagaac agtttctacg aacggctggc aaagctggga
     1201 tagccgcgct tttcgcggct ggtaacggct actcggccgg cgctatgctg ggtcccgccg
     1261 cgcggcgtgc attcttgcgg ctttgcagcc tgccgcccag ccggtcgaga taggaataga
     1321 tcaccggcgt gatatagagg gtcagaagct gcgacagcag caacccgccg gccacgcaca
     1381 ggcccagcgg gcggcgggat tccgcgcccg cgccgctgcc gaaggcgatc ggcagagtgc
     1441 ccatcagcgc cgccatggtg gtcatcatga tggggcggaa gcgggtgatg gcggcctcat
     1501 aaatcgcctg ttccggcggt atcaagacgt cggagcgctg ccggttgatc gcaaagtcga
     1561 tcatcatgat ggcgttcttc ttgacgatgc cgatcagcat gatcatgccg acaaaggcgt
     1621 agagcgtcag cgacatgtcg gaattggtga ttccccacag gaacagcaga tgcgcgaacc
     1681 acaaggtcag aagcccgccc accgccgcgc taggcaggcc cgacaggatg gtcagcgggt
     1741 ggatgaagct ttcatagagg atccctaaga tgatgtagac caccaccatg gcgatgatca
     1801 gcagcccacc catattcttg gtggaatcct ggaacgccgc cgcggtgccc tggaaattgc
     1861 cctggatgga atcgggcatg ccgacatcct cgctggcctg gcggatgccg ctgaccgcgt
     1921 cggacagcgc cttgcccggc gccaggtcga aggaaatcgt tacggcggga atctgccccg
     1981 catggttgac cgacagcggc acggtgctgg cggtcatttt ggtgacggcg gtcagcggca
     2041 ccagg
//
LOCUS       DATMDK010000119         3589 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2572231,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000119 DATMDK010000000
VERSION     DATMDK010000119.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3589)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3589)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3589
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2572231"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1013)
                     /locus_tag="VNN98_02350"
     CDS             complement(<1..1013)
                     /locus_tag="VNN98_02350"
                     /inference="COORDINATES: protein motif:HMM:NF015297.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldolase/citrate lyase family protein"
                     /protein_id="HWM60958.1"
                     /translation="MKRLLFSAALVAAVGLGTVAAFSQANEDDVAAAQAKYPLAAKAG
                     EDTHAIDKAPASATNQGKFDDKTWKFGHAYDPPPGSKLWNPVKIKMLAGGKVTGGTLF
                     SATDPETYCAMANAGYDFIWTEHQHDARDWKTTQRMWAACPYAKAVPGVRVAYTDERE
                     EQHALDAGALVLVVPTVRSYEEAIKARDWAFFPPLGRRSNGGGQAFALYNSVPGGYRA
                     TINDNLVLVLMIETLAGLKDADRIAKIPGVTAVFAASGDLGNHSGYKQNDPDYEREIN
                     IVHDAALKAGVRLCGPYAWVDRPDFTCFQAGSEAGAIARGVKDELGKNWNTQPVPDVG
                     PWA"
     gene            1169..2278
                     /locus_tag="VNN98_02355"
     CDS             1169..2278
                     /locus_tag="VNN98_02355"
                     /EC_number="5.1.3.-"
                     /inference="COORDINATES: protein motif:HMM:NF013431.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016857 - racemase and epimerase activity,
                     acting on carbohydrates and derivatives [Evidence IEA];
                     GO_function: GO:0030246 - carbohydrate binding [Evidence
                     IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldose epimerase family protein"
                     /protein_id="HWM60959.1"
                     /translation="MKRILLAVTLLAAAALPARAAITVQAWGGVGGKGVDLYTLTNTR
                     GMEVKITNYGAAITSIRAPGRDGKMADVVQGFDRLEDYTSPDYKGRYGAIIGRFANRI
                     KDNTFEVDRVTYHVSRDNYVLKESTNKPYDEQVWSAQTKDGDEPQLILSLLDRSGTMG
                     FPGTLRVSVTYTLTRSNVLRIAYRAISDKDTIISLTNHAYFNMAGDASGPVLDQLLTV
                     NADTITAVDDKNVPTGEMRAVAGTAFDFRRPTPVGAHINDPDPVIQRAHGFDQNYAIN
                     GAPGRMRLAARLEDPKSGRVLEEWTTQAGLQVYSANYPPPTVGAAKGYAVHSAVALEA
                     QAFPNALNIPSFPSAFLRQDTVYTEVTEYRFGVAP"
     gene            complement(2508..2831)
                     /locus_tag="VNN98_02360"
     CDS             complement(2508..2831)
                     /locus_tag="VNN98_02360"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM60960.1"
                     /translation="MKNRLALGFCLFSGCLLLAGCTDADWDHVMNYGGLTEEPEAAPA
                     PQRAAASEPAPIIATPAAPSEPANADFCRSVATQDAGSNGFDPATQARVFRQSYGQCL
                     AIYTR"
     gene            complement(2881..>3589)
                     /locus_tag="VNN98_02365"
     CDS             complement(2881..>3589)
                     /locus_tag="VNN98_02365"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HWM60961.1"
                     /translation="SNASALGTAIMPAGDYVRIEVADTGTGMSKEIQSKIFDPFFTTK
                     PVGQGTGLGLATVYGIVKQSGGFITVDSDVGQGTCFKIYLPRRKVEASDSVPLEAVPA
                     TARDVTGQDTILLVEDEEAVRSFAARALRMRGYNVLEASGGEEALEIVKSGDVKIDLI
                     ITDVVMPNMDGPTMVRHVKELKPDLAVIFMSGYAEEAFRRNDQNSEDIHFLPKPFGLK
                     QLAAKVKEVLAGAAVGG"
BASE COUNT          674 a         1162 c         1116 g          637 t
ORIGIN      
        1 ttcgcccagg ggccgacgtc cggcaccggc tgggtgttcc agttcttgcc cagctcgtcc
       61 ttgacgccgc gcgcgatggc gccggcttcg ctgcctgcct ggaagcaggt gaaatcggga
      121 cggtccaccc aggcataggg cccgcacagc cgcacccccg ccttgagggc ggcgtcatgc
      181 acgatgttga tctcgcgctc atagtccgga tcgttctgct tgtagcccga atgattgccc
      241 agatcgcccg aagccgcgaa caccgcggtg acgccgggga tcttggcgat acggtcggca
      301 tctttcaggc ccgccaaggt ctcgatcatc aggaccagca ccagattgtc gttgatggtg
      361 gcgcgatagc cgcccggcac gctgttgtag agggcaaagg cctggccgcc gccattgctg
      421 cgccgtccca aaggcgggaa gaaggcccag tcgcgcgcct tgatggcttc ctcataggaa
      481 cgcaccgtcg gcaccaccag aaccagcgcg ccggcatcca gggcatgctg ttcctcgcgc
      541 tcgtcggtat aggccacgcg cacgccgggc accgccttgg cataggggca agccgcccac
      601 atgcgctggg tggttttcca gtcgcgcgca tcatgctgat gttcggtcca gatgaaatcg
      661 taaccggcat tggccatggc gcagtaggtt tccgggtcgg tggcgctgaa caatgtgccg
      721 ccggtcacct tgccgccggc aagcatcttg atctttaccg gattccacag cttggagccg
      781 ggcggcggat cgtaggcatg gccgaacttc caggtcttgt cgtcgaactt gccctggttg
      841 gtggcactgg ccggcgcctt gtcgatggca tgggtgtctt cgccggcctt ggcggccagc
      901 ggatatttgg cctgcgcggc ggcgacgtcg tcctcattgg cttggctgaa tgccgcaaca
      961 gtgccaaggc ccacagccgc gaccagcgcg gcggaaaaca acaagcgttt cattgaaaat
     1021 ccctctcccc tcggccgtct cagtcgcggc cggtggcggc agctaatcag gaggaaccgc
     1081 gttggtcaaa cgcggcaaaa ccgcacttcg cgcccgcaat atggcgcaat gcaaaccggc
     1141 tttgtagggt gcgccaaggg agaaaatcat gaagcgcatc ttgcttgcgg tcacattgct
     1201 ggcggccgcc gcattgcccg ccagggccgc catcaccgtc caggcctggg gcggggtcgg
     1261 cggcaagggg gtggaccttt acaccctgac caacacgcgc gggatggaag tgaaaatcac
     1321 caattacggc gccgccatca cctccatccg cgcccccggg cgggacggca aaatggcgga
     1381 tgtggtgcag ggctttgacc ggctagagga ttataccagc cccgattaca agggccgcta
     1441 cggcgccatc atcggccgct tcgccaaccg catcaaagac aataccttcg aggtcgaccg
     1501 cgtcacctat cacgtctcgc gcgacaatta cgtcctgaag gaatccacca acaaacccta
     1561 tgacgaacaa gtctggtcgg cgcagaccaa ggacggcgac gaaccgcaac tgatcctgtc
     1621 cttgctggac cgcagcggca ccatgggctt tcccggcacg ctgcgggtat cggtgaccta
     1681 taccttgacc cggagcaatg tgctgcgcat tgcctatcgc gccatcagcg acaaggacac
     1741 catcatcagt cttaccaacc atgcctattt caacatggcc ggcgacgctt cgggcccggt
     1801 gctggaccaa ttgctgaccg tgaatgcgga caccatcacc gcggtggacg acaagaacgt
     1861 gccgaccggg gaaatgcgcg ccgtagcagg aaccgcgttc gactttcgcc gtcccacacc
     1921 ggtcggcgcg catatcaacg atcccgatcc cgtcatccag cgcgcgcacg gctttgacca
     1981 gaattatgcc atcaatggcg cacccggccg gatgcggctg gcggcacggc tggaagatcc
     2041 caagtcgggc cgggtgctgg aggaatggac cacccaggcg gggttgcagg tctacagcgc
     2101 caactatccg ccgcccacgg tgggcgccgc caaaggctat gcggtgcata gtgcagtggc
     2161 gctggaggcc caggcctttc ccaacgcgct caacattccc agcttcccca gcgcatttct
     2221 gcgccaggac acggtctata ccgaagtgac agaataccgc ttcggtgtgg cgccgtaggg
     2281 tcgggaggtt cgaaagaact cacacccaca gtgtcatggc ccgccacccc ggtccgcgcg
     2341 aagcgcggcc ggagtgtaaa ctccgtgcgg gccacccagg tgggataatc ctaatgtcgg
     2401 aaaatttgac tgcgcccatc tttcagtgtc cgcgctcggc atcacctggg cggcccggag
     2461 tcccgggccg tgacaagtgg ggggcattga gccaaaccaa aacggcgtca gcgcgtgtag
     2521 atcgccaaac actgcccata gctctgccta aagacgcgcg cctgggtcgc cgggtcgaag
     2581 ccattgctgc cggcatcctg cgtcgccacc gaacggcaga agtcggcatt ggccggttca
     2641 ctgggcgcgg ccggcgtcgc gatgatgggc gcaggctctg acgcggctgc gcgctgcggg
     2701 gccggagcgg cctccggctc ttccgtcaag ccgccatagt tcatcacatg atcccagtcg
     2761 gcatcggtgc agccagccag tagtaggcag ccagaaaaga gacaaaagcc cagggcgagg
     2821 cggtttttca tgggccggaa catagagcca aagcggcgct ttgcaagtga gctttccgga
     2881 tcagccgccg acagcggcgc cggccagcac ttccttgacc ttggcggcca gctgcttgag
     2941 gccgaaaggc ttgggcagga agtggatgtc ttcggaattc tggtcgttgc ggcgaaaggc
     3001 ttcctcggca tagcccgaca tgaaaatcac cgccagatcg ggcttcagtt ccttgacatg
     3061 gcgcaccatg gtgggcccgt ccatattggg catcaccaca tcggtgataa tgaggtcgat
     3121 cttgacatcg ccgctcttga cgatttccag cgcttcctcg ccgccgctgg cttccaggac
     3181 attgtagccg cgcatgcgca gggcgcgcgc ggcgaagctg cggaccgctt cctcgtcctc
     3241 caccaacagg atggtgtcct ggccggtcac gtcgcgcgcc gtggcgggca ccgcttccaa
     3301 gggcacgctg tccgaggctt cgaccttgcg gcgaggcaga tagatcttga aacaagtgcc
     3361 ctgacccaca tcgctgtcca cggtgatgaa accgcccgac tgcttgacga tgccatacac
     3421 cgtggccaat cccagcccgg tgccctggcc caccggcttg gtggtgaaaa agggatcgaa
     3481 gatcttgctc tgaatctcct tggacatgcc ggtgccggta tcggccacct cgatgcggac
     3541 atagtcgccc gccggcatga tggcggtgcc cagcgcgctg gcattgctg
//
LOCUS       DATMDK010000120         3318 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_522984,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000120 DATMDK010000000
VERSION     DATMDK010000120.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3318)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3318)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3318
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_522984"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(79..504)
                     /locus_tag="VNN98_02370"
     CDS             complement(79..504)
                     /locus_tag="VNN98_02370"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HWM60962.1"
                     /translation="MLKTVHTAILLTLISAGAATAAADTKVLNHHVANMKAGDLNGVL
                     SDYAPDAVVVTPAGMITPDGVFVGSEIRKLFSILTDKDHLPGNKTMQTRYEGAGADTS
                     VMQWVQFKGTAKEVSGYDVFVVRGGKIAFQTVIVNPAKK"
     gene            579..1811
                     /locus_tag="VNN98_02375"
     CDS             579..1811
                     /locus_tag="VNN98_02375"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HWM60963.1"
                     /translation="MNRRWTVLLPVIFISYSLAYLDRANFSFGAAAGMATDLRISSAQ
                     SSLLGSLFFLGYFLFQIPGAIYAQRYSVKRLIFAGLIGWGVLASATGLIADIRLLYID
                     RFLLGMVESAVLPAMLILQARWYTRPERARANAFLVLGNPVTLLWMSLLSGYLAAHTG
                     WRMMFVIEGLPPILWAFVWWRLVADRPREAAWLAPADRTALEETLAEEQRGIAPLPNY
                     AAAFKTPRVIMLAAQYFLWSIGVYGFVIWLPSMLKTRDMGMVELGFLSAVPYLAAVIA
                     EIAASTWSDLSGKRTSVMWPCLALAAAAFYGSYLLGASHFWISFALLTTAGAAMYAPY
                     GPFFAYIAEILPANVAGGAIALINGMGALGSFVGAYGVGRLNGITGSSGASYLMMAAA
                     LIVSAFLTFLAPEKARAS"
     gene            complement(1818..2303)
                     /locus_tag="VNN98_02380"
     CDS             complement(1818..2303)
                     /locus_tag="VNN98_02380"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM60964.1"
                     /translation="MDIDPVVFLAEELRTAESALHAAVKLYEKDHLQQNGEKVNALLT
                     SIKNLYRDIAETMPTSALGAAEMIRLAAQRLPFSMARYTTHFHDVADRLGAGRREQTD
                     LIWLRAMRSALKSGQGGEQGQRAAPLLSLALAGAARPVVVFRAVVPPPRDDDGRIRLR
                     N"
     gene            complement(2584..3033)
                     /locus_tag="VNN98_02385"
     CDS             complement(2584..3033)
                     /locus_tag="VNN98_02385"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM60965.1"
                     /translation="MIRKLLLASAFAWAGAPAIAATTDPSHAIALLPGQIQWTKGEAS
                     DTAWPIGDKDKPGACLELIRWHPNHFSHPHYHNHARYAVVLDGTWWVSTSTVYDPANN
                     TVPYPKGSVLTDLVKGVHYDGAKPETGDATIAIFMDCPLDGVPAETK"
     gene            complement(3123..>3318)
                     /locus_tag="VNN98_02390"
     CDS             complement(3123..>3318)
                     /locus_tag="VNN98_02390"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM60966.1"
                     /translation="AMHFHNTEVVVVFRGDGDIASTTQDGKTTVAHHSPGDIVFNTAN
                     RSHSEQVVKGAQSGIMLELK"
BASE COUNT          557 a         1009 c         1040 g          712 t
ORIGIN      
        1 cctatcgcgc gcggacgata tatctctccc ccatcccgac ctatcaaact ccgcccgcga
       61 cgccggcgca gtgagatttt actttttggc ggggttcacg atcaccgtct gaaacgcaat
      121 cttaccgccg cgcaccacga acacgtcgta gccggagact tccttggccg tgcccttgaa
      181 ctgcacccac tgcatgacgc tggtgtcggc gccggcgccc tcatagcggg tctgcatggt
      241 cttgttgccg ggcagatgat ccttgtcggt caggatggaa aacagcttgc ggatctccga
      301 acccacgaac acgccatcgg gcgtgatcat gccggccggc gtcaccacca ccgcatcggg
      361 ggcataatcg gacagtacgc cgttcagatc gcccgccttc atgttggcga catgatgatt
      421 aagcaccttg gtgtcggcgg cggcagtggc ggcgccggcg cttatcaagg tgagcaggat
      481 tgcggtgtgc acggtcttca gcatagcgtc ccccatatgt tgtttttctg ggctgaggct
      541 agtgcaggcc gaaaagggcc gcaaccgggg gtaagcgctt gaatcgccgt tggaccgtgc
      601 tgctgccggt cattttcatc agttacagcc tggcctatct ggatcgcgcc aatttcagtt
      661 ttggcgcggc ggcgggcatg gccactgatt tgcgcatttc ctcggcccag tcctcgctgc
      721 tgggctcgct gttttttctg ggctatttcc tgttccagat ccccggcgcg atttacgccc
      781 agcgctacag cgtcaagcgg ttgattttcg ccggcctgat cggttggggg gtgctggcca
      841 gcgccaccgg cctgatcgcc gatatccggc tgctgtatat cgaccgcttc ctgctgggca
      901 tggtggaaag cgcggtgctg ccggccatgc tgatcctgca ggcgcgttgg tacaccagac
      961 ccgaacgcgc ccgcgccaat gcttttctgg tgctgggcaa tcccgtgacc ctgctgtgga
     1021 tgtcgctgct gtcgggctat ctcgcggccc atacgggctg gcgcatgatg ttcgtgatcg
     1081 agggattgcc gcccatcctc tgggcctttg tgtggtggcg gctggtggcc gaccgcccgc
     1141 gcgaagcggc ctggcttgcg cccgccgacc gcacggcgct ggaggaaacc ctggcagagg
     1201 aacagcgcgg catcgccccg ctgcccaatt atgccgccgc cttcaaaacc ccgcgcgtca
     1261 tcatgctggc ggcgcagtat ttcctctgga gcatcggcgt ctatggtttc gtgatctggc
     1321 tgccgtccat gctcaagacc cgcgacatgg gcatggtcga gctgggattt ctgtcggcgg
     1381 tgccctatct ggcggcggtg attgcggaaa ttgccgcgtc cacctggtct gatctcagcg
     1441 gcaagcgcac cagcgtgatg tggccgtgcc tggcgctggc ggcggcggcc ttttatggct
     1501 cttatcttct gggcgcatcg catttctgga tcagcttcgc cctgctgacg accgcgggcg
     1561 ccgcgatgta cgcgccctat ggacccttct ttgcctatat cgccgaaatc ctgccggcca
     1621 atgtcgcggg cggtgccatc gccttgatca acggcatggg cgcgctgggc tccttcgtgg
     1681 gcgcctatgg cgtggggcgg ctgaacggca ttaccggatc gtcgggcgcg tcctatctga
     1741 tgatggcggc ggcgctgatc gtctccgctt tcctcacttt tttggcgccg gaaaaagcgc
     1801 gggcgtctta acgtccgtca attgcgcagt cttattctgc cgtcgtcgtc acggggcggc
     1861 ggcacaacgg cgcgaaacac caccaccgga cgggccgcgc ccgccagcgc caggctcaac
     1921 agcggcgcgg ccctctggcc ttgttcgccg ccctggccgc ttttcagtgc tgaccgcatc
     1981 gccctgagcc agatcaggtc ggtctgctcg cgccggccgg cgcccagccg gtcggccacg
     2041 tcgtgaaaat gggtggtata gcgcgccatg gagaagggca ggcgctgagc cgcgaggcgg
     2101 atcatctcgg ccgcgcccag cgcgctggtc ggcattgttt cggcgatgtc gcgatacagg
     2161 ttcttgatcg aggtcagcag cgcgttgacc ttttcgccat tctgctggag atggtctttc
     2221 tcatagagct tgaccgcggc atgcagcgcg gactcggcgg tacgcagttc ttccgccaga
     2281 aacaccacgg gatctatgtc catttgggaa ccccacaaat cgttaacgca aagacggggc
     2341 gacaataggg agatagcgga cgtaagaaaa tcataaacta taagaacgca gagttattca
     2401 caccgaacga tacaagattg ccgaaaattt gaatcaattc ttcggaccgg attcacgcag
     2461 cgtccgcaga taggcgggaa ctccggctgg gatatgttta ccgcgcgatt aaccacgccg
     2521 ataagcctgc gcgctgcggt tgtccgcgct cggaattacg cgttgcgaaa actttgagcg
     2581 aaactatttg gtttcggccg gcacgccgtc cagcgggcaa tccatgaaga tggcgatggt
     2641 ggcatcgccg gtttccggct tggcgccgtc ataatgcacg cccttgacca gatcggtcag
     2701 caccgagccc ttgggataag gcaccgtgtt gttggcgggg tcatagacgg tgctggtgga
     2761 aacccaccag gtgccgtcca gcaccaccgc atagcgggca tgattgtgat aatgcggatg
     2821 gctgaaatgg ttcgggtgcc agcggatcaa ttccaggcag gcgcccggct tgtccttgtc
     2881 gccgatgggc caggcggtgt cgctggcctc gcccttggtc cattggatct ggcccggcaa
     2941 cagggcaatg gcgtggctgg gatcggtggt ggcggcgatg gcaggcgcgc ccgcccacgc
     3001 gaatgcggaa gccagcagca gttttcggat catggacgtc tccccattat tatctccatt
     3061 gttgtatcag ccacgataag cgcattgggc tcgcacttcc atattgcggc tgcgtaaaga
     3121 ggctatttca attccagcat gatgccgctt tgcgcaccct tgaccacttg ctcggaatgg
     3181 ctgcggttcg cggtgttgaa gacaatgtcg ccgggactgt gatgagccac ggtcgtcttg
     3241 ccgtcctggg tggtggaggc gatgtccccg tcaccgcgaa aaaccaccac cacctcggta
     3301 ttgtggaaat gcatggcg
//
LOCUS       DATMDK010000121         2869 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2799661,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000121 DATMDK010000000
VERSION     DATMDK010000121.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2869)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2869)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2869
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2799661"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..840
                     /locus_tag="VNN98_02395"
     CDS             <1..840
                     /locus_tag="VNN98_02395"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012744.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HWM60967.1"
                     /translation="PVIHTAHDYHLLCPRAFLLTRDWKLCTQPAMACRLYRSWHLDTA
                     RRVDLFASPSRFLLEKHGEAGLRVADCAVVHNGIPLPPDMAEVRQRRAPESRKRFLML
                     TRLTVEKGVQVVLEAVRRLPADLDVEVAIAGKGPLEEDVMAAARDDPRISYLGYLAGE
                     AKREALARAGYLLLPSLWYENAPVAIVEAAAYGLGLIGSDIGGIPEFVEPGRTGFLFP
                     PGDAAALAGLMARVARDADIQPSLAPHSLALAQHFAAERMVENYQVRYETLLDRRAAL
                     AAQ"
     gene            797..2701
                     /locus_tag="VNN98_02400"
     CDS             797..2701
                     /locus_tag="VNN98_02400"
                     /inference="COORDINATES: protein motif:HMM:NF024120.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyl hydrolase family 28-related protein"
                     /protein_id="HWM60968.1"
                     /translation="MKLFSTGVPPLRRSDMRWPALLLAGSVLASAAAAEPLPADSGIV
                     NVRDYGAKGDGQSDDTAAILKAIAASGEDTGRSFWQDRIVYMPDGAYRVSGTLLKRYG
                     DGRFGSGLILMGQSEAGTVIRLADHAPGFGDVAQPRAILFTSSKQLDGTPTSGGKDYV
                     GKGEGNDAYLNSVEDMTIDTGRGNPGAIAIDYLANNIGAIRHVTLRAAPGSGLIGLSM
                     TRKWPGPALIRDLTVHGFATGIAVAQTEYGLTFENIRLDGQAAAAIRNDQNSLSLHGV
                     VISGSAAAIANTGEKGLIAIADGHIENSGGPFKNAGMMVLRGVRLGDGRLLNGTMAGS
                     QWTDRPPPAGMPMPMDTPPPAAAPPARWVNAAKFGAIADPAQDSTEGLRRAFASGAEV
                     IYLPHGTYAISDSIAVPGTVRRILGMQSTLKILAARKPGFSRASGMLKIASTGQPVSI
                     ERLAFDNTNMGQQLAIEVAGRRDVVIKDVVAAGVGLLDRKDEGGRVFLEDVCCGRLQT
                     AGPAPVFARQFDTEGGGARITNLGSPLWLLGLKTEGISTIVENHAGARTDIFGGLVYM
                     VRKGAPVPAFSNDGGWLSACFAEESLQPGSHYEIYLTDKTRNIAADAFPSRGLAHFVP
                     DLAAAPTNTN"
BASE COUNT          462 a          935 c          969 g          503 t
ORIGIN      
        1 ccggtgatcc ataccgcgca cgactatcat cttctgtgtc cgcgcgcctt cctgctgacc
       61 cgcgactgga agctgtgcac ccagcccgcc atggcctgcc gtctgtaccg aagctggcat
      121 ctcgataccg cccgccgggt ggacctgttc gccagcccgt cgcgcttcct gctggaaaag
      181 catggcgagg cggggttgcg ggtggcggac tgcgccgtgg tgcataacgg cattcccttg
      241 ccgccggaca tggcggaggt gcgccagcgc cgcgcgcctg aaagccgcaa gcgctttttg
      301 atgctgaccc gtctcaccgt ggaaaagggc gtgcaggtcg tgcttgaggc cgtccgccgc
      361 cttcccgccg atctggatgt ggaggtcgcc atcgccggca aaggtccgct ggaggaagac
      421 gttatggccg cggcgcgcga tgacccccgc atttcctatc ttgggtacct ggccggcgag
      481 gccaagcgcg aggcgttggc gcgggccggt tatttgctgc tgccatcgct ctggtatgag
      541 aacgccccgg tggcgatcgt ggaggccgcc gcttatggcc tgggcctgat cggcagcgac
      601 atcggcggca ttcctgaatt cgtcgaaccc ggacgcaccg gtttcctgtt cccgcccggc
      661 gacgccgcgg cgctggccgg tttgatggcg cgggtggcgc gggatgcgga tatccagcca
      721 tcgctggcgc cgcattccct ggccctggcg cagcattttg ccgccgaacg gatggtggag
      781 aattatcagg ttcgctatga aactcttctc gaccggcgtg ccgcccttgc ggcgcagtga
      841 catgcgatgg ccggcgttgc tgctggcggg atcggtcctg gcgtccgccg cggcggcgga
      901 gccgcttcct gccgacagcg gcatcgtcaa cgtccgcgac tatggtgcca aaggcgacgg
      961 acagagcgac gataccgccg ccatcctcaa ggccatcgcc gccagcggcg aggataccgg
     1021 gcgcagcttc tggcaagacc gtatcgttta tatgccggat ggcgcctatc gcgtctccgg
     1081 caccttgctc aaacgctatg gcgatggccg tttcggctcc ggcctgatcc tgatgggaca
     1141 gtccgaggcc ggcaccgtga tccgcctggc cgatcatgcg ccgggctttg gcgatgtcgc
     1201 gcagccgcgc gccatcctgt tcaccagttc caagcagctt gacggcacgc cgaccagcgg
     1261 cggcaaggac tatgtgggca aaggcgaggg caacgacgcc tatttgaatt cggtcgagga
     1321 tatgaccatc gacaccggcc ggggcaatcc cggcgccatc gccatcgact atctggccaa
     1381 caatatcggc gccattcgcc atgtcaccct gcgcgccgcg ccgggcagcg ggttgatcgg
     1441 gctttccatg acccgcaaat ggccgggccc ggcgctgatc cgcgacctga cggtgcacgg
     1501 cttcgccacc ggcatcgcgg tcgcccagac cgaatatggc ctgaccttcg agaatatccg
     1561 gctggatggc caggcggcgg cggctattcg caatgaccag aattcgcttt ccctgcatgg
     1621 cgtggtcatc agcgggtccg cggccgccat tgccaatacc ggagaaaaag ggctgatcgc
     1681 catcgccgac gggcatatcg aaaattcggg cgggccgttc aagaatgccg gaatgatggt
     1741 gctgcgcggg gtgcggctgg gggatggacg gctgctgaac ggcacgatgg cgggatcgca
     1801 atggaccgat aggccgccgc cagccggtat gcccatgccg atggatacgc cgccccctgc
     1861 cgcggcgccg ccggcgcgct gggtcaatgc cgccaagttc ggcgccatcg ccgatccggc
     1921 gcaggattcc accgaggggc tcaggcgcgc cttcgcttcc ggcgcggaag tgatctatct
     1981 gccccacgga acctatgcca tcagtgacag tatcgcggtg cccggcacgg tgcgccgcat
     2041 cttgggcatg cagtccaccc tcaagatact ggcggcgcgc aagcccggct tctcgcgcgc
     2101 cagcggcatg ctgaagatcg cctccaccgg ccagcctgtc tccatcgagc gtctcgcctt
     2161 cgacaacacc aatatgggcc agcagctggc catcgaggtg gcaggccggc gcgatgtggt
     2221 gatcaaggat gtggtggcgg cgggtgtggg attgctggac cgcaaggacg aaggcggccg
     2281 cgtcttcctg gaggatgtct gctgcggccg cctgcagacc gccgggcctg cgcccgtttt
     2341 cgcccgccag ttcgataccg aaggcggggg cgcgcggatc accaatctgg gcagcccgct
     2401 ctggctgttg ggtctgaaga ctgagggcat ttccaccatc gtcgagaacc atgccggcgc
     2461 ccgcaccgat atcttcggcg gcctggtcta tatggtgcgc aagggcgcgc cggttccggc
     2521 tttcagcaat gacggcgggt ggttgtcggc ctgttttgcc gaagagtcgc tgcagcccgg
     2581 cagtcactat gaaatctatc tgacggacaa gacccgcaac atcgcggcgg atgccttccc
     2641 ctcgcgaggc ctggcccatt tcgtgccgga cctggctgcg gcgcccacca ataccaatta
     2701 gccagttaat agggacgctg gaccgcgaag ggatcgggcg cggtatgcag ggcagggggc
     2761 ggcggcgcgg ccaggcaggc gccatggcgg cgtgcgcttt cctgccggca ggtggcgagg
     2821 tccgcataga cgcaggaaat ggcattgccg gattccacca cacagaagg
//
LOCUS       DATMDK010000122         2582 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1203907,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000122 DATMDK010000000
VERSION     DATMDK010000122.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2582)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2582)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2582
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1203907"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            160..870
                     /locus_tag="VNN98_02405"
     CDS             160..870
                     /locus_tag="VNN98_02405"
                     /inference="COORDINATES: protein motif:HMM:NF015747.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-binding domain-containing protein"
                     /protein_id="HWM60969.1"
                     /translation="MPELFTRRTLLAASGAMMIAPVALAQVKRPIGIIGAGNIGGTIG
                     ALWIKSGHPVMFSSRNPDELKDMVASLGSLAHAGTVAQAITFGDALFIAVPYAALPQI
                     GSDYRDALKGKIMLDACNAVPTRDGDAITKEADTNGTGVTSQKYLAGTRLVRAFNTMG
                     AKIFKTQSNRPDPKLAIPIAGDDAEAVRVAESLVRDAGFEPVLVGGLDSAKKFQQRGG
                     PGYGVQGSAAELKQKMGI"
     gene            complement(848..2143)
                     /locus_tag="VNN98_02410"
     CDS             complement(848..2143)
                     /locus_tag="VNN98_02410"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005471 - ATP:ADP antiporter activity
                     [Evidence IEA];
                     GO_process: GO:0006862 - nucleotide transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Npt1/Npt2 family nucleotide transporter"
                     /protein_id="HWM60970.1"
                     /translation="MFARALKHIAGIEPHEVKAVVTAFVYFFFLMASYFILRPLRDTM
                     GTVYGVKHLQELFTGTFILSFIVAPVFAGLASRIRLASFLPWVYGFIAITMVVFYVLF
                     QRVANDRWVAAAFYIWLSTFNLLTISVFWSLMADTFSSAQAKRLFGFIAAGGTVGTIS
                     APAFIALFVHSVGTNNLLLISAAGFTITAFLVRLLETEKRKLAAGGQAAAPTTLDRKL
                     GGNPFDGFVLLFRSRYLLMIALFLLLMTWISTVIYFQLGDLISKEFASRAARTQAYAT
                     IDLATNSIAVLIQLFGTGRFIRRFGVTTGLLINPVIMVIAFIAVVFSPVLLVLGAVQV
                     TRRFSEYAIAKPSRDMLFTVVDQQAKYKAKNVIETVVYRFGDLTSSWVSAAVLPFGVA
                     GLAIFGIAIAAVWFPVAWLLGRQYETVRDGEVLKSPSSA"
     gene            complement(2229..>2582)
                     /locus_tag="VNN98_02415"
     CDS             complement(2229..>2582)
                     /locus_tag="VNN98_02415"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM60971.1"
                     /translation="ILMAGACLAIAVAPTFFLIQAGRATQRISQYGIARPSREVLFTV
                     VDQQSKYKAKNVIDTTVYRFGDLSSAWMLTGLRAAGFGLLGAMTFGIAVSAVWGAVAV
                     ALGRRYEALGGKPAA"
BASE COUNT          566 a          796 c          791 g          429 t
ORIGIN      
        1 aatgtttcct tatgcgaaga aattacccga aagccgacct ggcaccaata tggctcatcg
       61 ctgatttcgt tatgaatttt cctttccgga cggatttgta ccaagccggt tgcgaaacta
      121 tgcgcttggc gtaaccttgg cggaaaatgg gaggttccga tgcctgaact cttcacccgc
      181 cgaaccctgc ttgccgccag cggcgcaatg atgatcgcgc cggtggccct ggcgcaggtc
      241 aagcggccca tcggcattat tggggccggc aatatcggcg gcaccatcgg cgccttgtgg
      301 atcaagagcg gccatccggt gatgttctcc tcgcgcaatc ccgatgagct caaggacatg
      361 gtcgcttcgc tcggctccct cgcccatgcc ggcacggtgg cccaggcgat caccttcggc
      421 gacgctctgt tcatcgccgt gccctatgcc gccctgcccc agatcggcag cgactatagg
      481 gacgcgctca agggcaagat catgctggat gcctgcaacg cggtccccac ccgtgacggc
      541 gatgccatca ccaaggaggc cgatacgaac ggtaccggtg tcacctcgca gaaatatctc
      601 gccggcacac ggctggtgcg cgccttcaac accatgggcg ccaagatttt taagacccaa
      661 tcgaaccgtc ccgatcccaa gctggcgatt cccatcgccg gcgacgatgc cgaggcggta
      721 cgcgtcgccg aaagtctggt gcgcgacgcc ggcttcgagc cggtgctggt cggcggcttg
      781 gacagcgcca agaagtttca gcagcgcggc ggccccggct atggtgtgca gggaagcgcg
      841 gccgagctca agcagaagat ggggatttaa gaacctcgcc gtcacgcaca gtttcatact
      901 ggcggcccag cagccaggcg accggaaacc agacagcggc aatcgcgatc ccgaagatcg
      961 caagcccagc cacgccgaac ggcagcaccg cggcgctgac ccaggacgaa gtgagatcgc
     1021 cgaaacggta gaccaccgtc tcgatcacat tcttggcttt gtacttggcc tgctggtcca
     1081 ccaccgtgaa cagcatatcg cggctgggct tggcgatggc atattcgctg aagcgccgcg
     1141 ttacctgaac ggcgcccagc accaacagca cgggcgagaa aaccaccgct ataaaagcga
     1201 tcaccatgat gacgggatta atcagcaacc cggtggtgac gccgaagcgc cggatgaagc
     1261 gcccggtgcc gaacagctgg atcagcacgg cgatggaatt ggtcgccaga tcgatggtgg
     1321 cgtaggcctg ggtgcgggcg gcgcggctgg cgaattcctt gctgatcaga tcgcccagct
     1381 ggaaataaat cacggtggaa atccaggtca tcagcaacag gaacagcgcg atcatcagca
     1441 gatagcgcga gcggaacaga aggacgaaac cgtcgaacgg gttgccgccc agcttgcggt
     1501 ccagcgttgt gggcgccgcc gcctggccgc cggcggcgag cttgcgcttt tccgtctcca
     1561 gcaggcgcac caggaaggcg gtgatggtga aacctgccgc cgatatcagc agcagattgt
     1621 tggtgccgac gctgtgaacg aataaggcga taaaggccgg cgcactgatg gtgccgacag
     1681 tgccgcccgc cgcgatgaag ccgaacagtc gcttggcctg ggcgctggag aaggtgtcgg
     1741 ccatcaggct ccagaacact gaaatggtca ggaggttgaa ggtggagagc cagatataaa
     1801 atgccgccgc gacccagcgg tcattcgcga cccgttggaa caggacatag aacaccacca
     1861 tggtgatggc gatgaagcca tagacccagg gcaggaagct tgccagccgg atgcgcgagg
     1921 caagtccggc aaataccggc gccacgatga agctcaatat aaatgtgccg gtgaaaagtt
     1981 cctgcagatg cttgacgcca tagaccgtgc ccatcgtgtc gcgcagcgga cgcaggatga
     2041 aataactggc catcaggaag aagaaataga cgaaggcggt aaccaccgcc ttgacctcat
     2101 gcggctcgat cccggcaata tgcttcaacg cgcgcgcaaa catgatggtc cctcttcccg
     2161 gtcccggatt tgctccgatg tcggcttatt ataatggaaa atggacgccg ggacagcgcc
     2221 cggcgacgtc acgcggccgg cttgccgccc agggcctcgt agcgccgtcc cagcgccaca
     2281 gccacggcgc cccagacggc cgaaaccgcg atgccgaacg tcatcgcgcc cagcaagccg
     2341 aagccggcgg cgcgcaatcc ggtcagcatc caggccgagc taagatcgcc gaagcggtac
     2401 accgtcgtgt cgatgacatt cttggcttta tacttgctct gctgatcgac cacggtgaac
     2461 aggacttcgc ggctgggcct ggcgatccca tattgcgaaa tccgctgcgt cgcccggccc
     2521 gcttgtatca ggaaaaaagt gggagcgacg gcaatcgcca gacaagcccc cgccatcagg
     2581 at
//
LOCUS       DATMDK010000123         5869 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1887894,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000123 DATMDK010000000
VERSION     DATMDK010000123.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 5869)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5869)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5869
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1887894"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            144..908
                     /locus_tag="VNN98_02420"
     CDS             144..908
                     /locus_tag="VNN98_02420"
                     /inference="COORDINATES: protein motif:HMM:NF012797.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA methyltransferase"
                     /protein_id="HWM60972.1"
                     /translation="MTPPAIILSHTQMGENVGAAARAMKNFGLTDLRLIAPKMEWPND
                     RAQILASGAGDILEATQIHADAAGALADFQLVLATTARGRDVTREVLTPQAAVQRLRQ
                     ASDAGLKTAILFGGERAGLDNDEISLCDALITIPTAPLPQIKETEIKASSLNLGQAVL
                     LLGYEWLKSADATPASRTRPSIAVPASRQELVDLFEHLERELDAGGFFFPPAKKGAMV
                     RNIRAMILRSGLTDQQARTIRGMIVALVRNKYRGQL"
     gene            905..1774
                     /locus_tag="VNN98_02425"
     CDS             905..1774
                     /locus_tag="VNN98_02425"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM60973.1"
                     /translation="MSAAPIIGFVLIALLAIAFAVVPLLRMKDKRRRALLLAAVALAM
                     LGIGGGSYYLLGRPHLAQRDAEGLNVHEVNGLVPYLIQRVRQHPDDARAWRYLGQAYM
                     TANDPRDAAKALAKVIALTGKGDPALDAAYGEALVLDNGGTVPPEAEASFTAALAVDP
                     RNTPARFYLGLAKAAHNDRPGAIALWQSLLADTPVTAPLHQMLVDRLAILTSQTAGAA
                     PNPRAMVDMLAARLKADPNDALGWVRLMRAYTVLGETEKAKQALVSARKAFAGNADAQ
                     TAFTTAAKALKLN"
     gene            complement(1946..3115)
                     /locus_tag="VNN98_02430"
     CDS             complement(1946..3115)
                     /locus_tag="VNN98_02430"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM60974.1"
                     /translation="MDIKKRDFLRGFGMVSAGAVAATSALAQPTRNPDGGYPPGVPKA
                     TGRSMLDSPHYIGTASKGYGFKANWARTLPMVPSVDPKYKPRRINKAIELWEDNQVVA
                     YAEFGPSGAPDTYEEGKRLSQTYCDAINYEMENDAFNFSELRNFMQGLVDGGPTPSGH
                     RTPMVFVTLPAWGFDGASMRANVWQIHQALAAGAHGVLICEMESPEAAEIAIAGGRYK
                     WTWPGVEELPIEGVRGAGSQSFAAHIWGISPSEYTRVADVWPHNPKGEITMGFKLENR
                     RSAMAAEQLMAVKGLAFAEPGPSDNGWSHLGWDAIRGDLTQAQRAALPASKRLEEDLE
                     RIRLAAKANNVKWLGNGPPGATPQQEIDQGRRMGPAGTEERVQADRLYTKRKMPY"
     gene            complement(3159..3947)
                     /locus_tag="VNN98_02435"
     CDS             complement(3159..3947)
                     /locus_tag="VNN98_02435"
                     /inference="COORDINATES: protein motif:HMM:NF013183.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-binding protein"
                     /protein_id="HWM60975.1"
                     /translation="MTPADDNRNAAVLVIGDEILSGRTQDTNTNAIARFLTALGIDLK
                     EVRVVGDVEGEIVAALNALRAGYDLVFTTGGIGPTHDDITADAVARAFNVGIGYHPGA
                     YALLEARYPPGEFNDMRKRMARIPHGASLVANAVSGAPGFHIGNVYVLAGVPMVMHAM
                     LEAIAPQLPRGPAIKSITVEASIPEGTIAPGLAELQQSHPDVAIGSYPFYREGAAQPF
                     GAQLVVRGRNGEAVERAALMLEDMLRQLGAAPQRVNLADSASEK"
     gene            4006..4839
                     /gene="map"
                     /locus_tag="VNN98_02440"
     CDS             4006..4839
                     /gene="map"
                     /locus_tag="VNN98_02440"
                     /EC_number="3.4.11.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007567737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type I methionyl aminopeptidase"
                     /protein_id="HWM60976.1"
                     /translation="MTIVPQSEIFEAARKAHFAVTLHNPADFEGMRRAGRLAAEVLDL
                     LVPLVKPGVTTADLDKMAYDYIVAHGAVPACLGYRGYRHTVCTSINHVVCHGIPNDKP
                     LRDGDIVNIDVTVILDGWHGDTSRMYPVGEVKRKAERLVEITYDAMMRGIAVVKPGAT
                     TGDIGYAIQSFAEGQEKCAVVRDFCGHGLGKVFHALPNIVHYGKPGGGIPLKPGMFFT
                     IEPMINLGGYGVKVLGDGWTAVTRDRSLSAQFEHSVGVTETGVEIFTLSPKGLHKPPY
                     L"
     gene            4848..5561
                     /gene="radC"
                     /locus_tag="VNN98_02445"
     CDS             4848..5561
                     /gene="radC"
                     /locus_tag="VNN98_02445"
                     /inference="COORDINATES: protein motif:HMM:NF000642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RadC"
                     /protein_id="HWM60977.1"
                     /translation="MDEANAPSTPPRAADNGTEGHRERLRARFLKGGADAMPDYELLE
                     LTLFAALPRRDTKPLAKALLARFGSFAEVIAAPRARLIEVKVVGEAVANHLKIVEAAA
                     HRLAKTKVMGRPALSSWAALLDYCTAAMARAQTEEFRVLFLDRKNNLVADEVQNRGTI
                     DHTPVYPREIVKRALELGASSIILVHNHPSGDPTPSKADITMTREITAAAKALSIAVH
                     DHLVIGRAGHASFKSLGLL"
     gene            5558..>5869
                     /locus_tag="VNN98_02450"
     CDS             5558..>5869
                     /locus_tag="VNN98_02450"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1801 domain-containing protein"
                     /protein_id="HWM60978.1"
                     /translation="MKQTTQLFRLSGAVHRDPAVNAWLSQPADELRRIAQIWFEHMRG
                     CGADVRELLHDGCPTACVQDAAFGYVNAFRDHVNVGFFYGATLGDPAGLLEGTGKRMR
                     HV"
BASE COUNT         1037 a         1899 c         1864 g         1069 t
ORIGIN      
        1 gatgcgggtc atctcgtcgc cgtccagctc gacgatcgga ttggcaacct taatcttttc
       61 catcggattt cctcgaaata tagggcggga ggggttatag cggcctcgtt taacccgcaa
      121 aaaccggccc gtcaaagcgt ccaatgaccc cacccgccat catcctgtcc catacccaga
      181 tgggcgaaaa tgtcggggcc gcggcccggg cgatgaagaa tttcggcctc acggacctgc
      241 gcctgatcgc ccccaagatg gaatggccca atgaccgggc ccagatcctg gccagcggcg
      301 cgggcgacat tctggaggcc acccagatcc atgcggacgc tgccggggcg ctggccgatt
      361 tccagctggt gctggcgacc acggcgcggg gcagagacgt aacgcgcgag gtcctgacac
      421 cgcaggccgc ggtgcagcgg ctgcgtcagg cgtcggatgc gggcctgaaa accgccatcc
      481 tgttcggcgg cgaacgggcc gggctggaca atgacgaaat ctcgctgtgc gacgccctga
      541 tcaccattcc caccgcgcca ctgccgcaga tcaaggagac ggagatcaaa gcctcctcgc
      601 tcaacctggg ccaggcggtt ctgctgttag gttatgagtg gttgaaaagc gccgacgcca
      661 cgcccgcctc gcgcacccgg cccagcatcg cggtcccggc cagccgccag gaactggtgg
      721 atctgttcga acatctggag cgggaactgg atgcgggcgg gtttttcttt ccccccgcca
      781 agaagggggc catggtgcgc aacatccgcg ccatgatatt gcgctccggc ctgaccgatc
      841 agcaggcccg caccatccgc ggcatgatcg tggcgctggt gcgcaacaag tatagaggtc
      901 aattgtgagc gccgcgccca tcatcggttt tgtcctgatc gccctgctgg cgattgcctt
      961 cgccgtggtg ccgttgctgc ggatgaaaga caaaagacgc cgcgcgcttc tgctcgccgc
     1021 cgtcgcactt gccatgctgg ggatcggcgg cggcagctat tatctgctcg gccgcccgca
     1081 tctggcgcag cgcgatgccg aggggctgaa cgtccacgaa gtcaacggat tggtgcctta
     1141 cctgatccag cgcgtgcgtc agcatccgga tgatgcgcgc gcctggcgct atctgggcca
     1201 ggcttacatg acggcgaacg atccgcgcga cgccgccaag gcactggcga aagtcatcgc
     1261 cttgaccggc aagggtgatc cggcgctgga cgccgcctat ggcgaagcct tggtgttgga
     1321 caatggcggc accgtgccgc cggaagccga agcctccttc accgccgcat tggcggttga
     1381 tcccaggaat acacctgcgc gcttttatct gggcctggca aaggcggcgc ataacgaccg
     1441 ccccggtgcg atagcactgt ggcagagcct gctggccgac acgccggtca ccgcgccgct
     1501 gcaccagatg ctggtggacc ggctggcgat cctgacctcg caaaccgccg gagccgcgcc
     1561 caatccgcgc gccatggtgg acatgctggc ggcgcggctg aaagccgatc ccaatgacgc
     1621 gctgggctgg gtgcgcttga tgcgcgccta taccgtgctg ggcgaaacgg aaaaggccaa
     1681 gcaggcattg gtcagcgcgc gcaaagcctt tgccggcaat gcagatgcgc agacggcttt
     1741 cacgactgcg gcgaaggcgt tgaagctgaa ctgaatctca gtgtcacgtc cgcgctcctg
     1801 gttcgcccgg agtgcggttc tgaaacaccc cctcacccgc ggacgcttcg cgtccttgcc
     1861 ctctcccccg atgggggaga gggaagagcg cgcgcgtcag cgcgtgcgag ggtgaggggg
     1921 acagcgctgg tcgtccagaa ttgggtcagt acggcatctt gcgcttggtg tagaggcgat
     1981 cagcctgcac tcgttcttcg gtaccggcgg gccccatgcg tcttccctga tcgatctcct
     2041 gctgaggggt cgcgccgggt gggccattgc ccagccattt gacgttgttc gccttggccg
     2101 cgagacggat acgttccaga tcttcctcca gacgcttgga ggccggcagg gcggcgcgct
     2161 gggcctgcgt gaggtcgccc cggatcgcgt cccagcccag atgggaccag ccattgtcgc
     2221 tgggaccagg ctcggcaaag gccaggcctt tcaccgccat cagctgctca gccgccatgg
     2281 cggagcggcg gttctccagc ttgaagccca tggtgatttc gcccttggga ttgtgcggcc
     2341 agacatcagc gacacgcgta tactccgatg ggctgatgcc ccagatgtgc gcggcgaaag
     2401 actggctgcc cgcgccccgc accccttcaa tgggaagttc ctccaccccg ggccaggtcc
     2461 atttgtagcg cccgcccgcg atggcgatct cggccgcctc cggcgattcc atttcgcaga
     2521 tcagcacgcc gtgcgcgccc gccgccagcg cctgatggat ttgccacaca ttggcgcgca
     2581 tcgaagcgcc gtcgaagccc catgccggca gggtgacgaa caccatcggg gtgcgatggc
     2641 cggacggggt gggcccgcca tccaccaggc cctgcatgaa gttgcgcagc tcggagaaat
     2701 tgaaggcatc attctccatc tcgtaattga tggcatcgca ataggtctgg gatagccgct
     2761 tgccttcctc ataggtgtca ggcgcgcccg aaggcccgaa ttccgcataa gcgacgacct
     2821 ggttgtcctc ccacagctcg atcgccttgt tgatgcggcg cggcttgtac ttgggatcga
     2881 cgctaggaac catcggcaag gtgcgggccc agttcgcctt gaagccatag cccttgctgg
     2941 cggtgccgat atagtgcggg ctgtccagca tgctgcggcc cgtggccttg ggaacgccgg
     3001 gcggatagcc gccgtcaggg tttcgcgtgg gctgggccag ggcactggtg gcggcgacgg
     3061 ccccggcgct gaccatgccg aagcctctta gaaaatcacg cttcttgatg tccattgcta
     3121 acccccgcag attgttattg tcgttggggg aaagcctgtc acttctctga cgcgctgtca
     3181 gccagattta cgcgctgcgg tgcagcaccg agttgtcgca acatgtcttc cagcatcagc
     3241 gcggcacgtt ccaccgcttc gccgttacgg ccgcgcacca ccagttgcgc cccgaaaggt
     3301 tgggcggcgc cttcgcgata aaagggatag ctgccgatgg cgacatcggg atgggactgt
     3361 tgcagttcag ccaagccggg cgcgatggtg ccttccggaa tactggcttc cacggtgatg
     3421 ctttttatcg ctgggccacg cggcagctgc ggggcgatag cttccagcat ggcgtgcatc
     3481 accatcggca cacccgccaa gacatagaca ttgccgatat gaaatcccgg cgcccccgac
     3541 acggcattgg ccaccagcga agcgccatgg ggaatgcggg ccatgcgctt tcgcatgtcg
     3601 ttgaattcgc cggggggata gcgcgcctcc agcaaggcat aggcgcccgg atggtagccg
     3661 atgcccacat taaaggccct ggccaccgcg tcggcggtga tgtcgtcatg ggtgggcccg
     3721 atgccgccgg tggtgaacac aagatcatag cctgcgcgca gggcattcaa ggcggcaacg
     3781 atctcgcctt cgacatcgcc caccacccgc acttccttga ggtcgatgcc cagggcggtg
     3841 aggaaccggg cgatggcgtt ggtgttggta tcctgggtgc ggcccgacag aatctcgtcc
     3901 ccgatcacca ggacagcggc attccggtta tcgtccgcgg gggtcattca gaatcctgta
     3961 accgggcttt ggttttatcg gccggcacac tatattggcc gggccatgac catcgtaccc
     4021 cagtccgaga tttttgaagc ggcgcgcaag gcccatttcg cggtaacctt gcacaatcct
     4081 gctgattttg agggcatgcg ccgggccggc cgcctggccg ccgaggtctt ggacctgctg
     4141 gttccgctgg tgaagcccgg cgtcaccacg gccgacctgg acaagatggc ttatgactac
     4201 atcgtggccc atggcgccgt tccggcctgc ctgggctatc gcggctaccg ccacaccgtc
     4261 tgcacctcga tcaaccatgt ggtgtgccac ggcattccca atgacaagcc gttgcgcgat
     4321 ggcgacatcg tgaacatcga cgtcaccgtg atcctggacg gctggcatgg cgatacttcg
     4381 cgcatgtatc cggtgggcga ggtcaagcgc aaagccgagc ggctggtcga gatcacttac
     4441 gatgccatga tgcgcggcat cgcggtggtg aagcccggcg ccaccaccgg cgacatcggc
     4501 tacgccatcc agtctttcgc cgaaggccag gagaaatgcg ccgtggtgcg cgatttttgc
     4561 ggccacggcc tcggcaaggt gtttcacgcc ctgcccaaca tcgtgcatta cggcaagccg
     4621 ggcggcggca ttcccttaaa gcccggcatg ttcttcacca tcgagccgat gatcaatctg
     4681 ggcggctatg gcgtaaaggt gttgggcgat ggctggaccg ccgtaacgcg cgaccgctcg
     4741 ctgtcggcgc aattcgagca ttcggtgggc gtgacggaaa caggcgtgga aatcttcacc
     4801 ctgtcgccca aaggcctgca caaaccgccc tatctctgag cgccaccgtg gacgaggcga
     4861 acgccccttc gacgccgccc cgggccgccg acaatggcac cgaaggccac cgcgaacgtt
     4921 tgcgggcacg tttcctcaaa ggcggcgccg acgccatgcc cgactacgaa ctgctggaat
     4981 tgaccctgtt cgccgccctg ccccggcgtg acaccaaacc cctggccaag gcgctgctgg
     5041 cgcgtttcgg gtcgtttgcc gaagtgatcg cggcaccgcg tgcgcggctg attgaagtca
     5101 aagtcgttgg cgaagcggtg gccaatcact tgaagatcgt ggaagccgcc gcccaccgcc
     5161 tggcgaagac caaagtgatg gggcggccgg cgctgtcgtc ctgggccgcg ctgctggatt
     5221 actgcacggc ggcgatggcg cgcgcgcaga ccgaggaatt ccgcgtgctg ttcctggacc
     5281 gcaagaacaa tctggtggcc gacgaggtgc agaatcgcgg caccatcgat cacacccccg
     5341 tctatccgcg cgagatcgtc aagcgggcgc tggagctggg cgcctcttcc atcatcctgg
     5401 tgcacaacca tccatccggc gatcccacac cctccaaagc cgacatcaca atgacgcggg
     5461 aaatcaccgc cgccgccaag gcgctctcca tcgccgtgca cgatcatttg gtgatcggac
     5521 gggcgggcca tgccagtttc aagtccctgg gcctgctttg aagcaaacaa cccaactctt
     5581 tcggctctcc ggcgcagtcc atcgggaccc cgcggtcaac gcctggcttt cccagccggc
     5641 tgacgaattg cggcggattg cacaaatatg gtttgagcac atgcgtggct gcggcgccga
     5701 cgtccgcgag ctactgcacg acggctgccc caccgcatgt gtgcaggacg cagcgtttgg
     5761 atacgtcaac gcctttagag atcatgtaaa cgtgggtttc ttctatggtg cgacgctcgg
     5821 cgatcctgcg ggccttctgg aaggtaccgg caaacgcatg cggcacgtg
//
LOCUS       DATMDK010000124         4161 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_745554,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000124 DATMDK010000000
VERSION     DATMDK010000124.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 4161)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4161)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4161
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_745554"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..432
                     /gene="hisG"
                     /locus_tag="VNN98_02455"
     CDS             <1..432
                     /gene="hisG"
                     /locus_tag="VNN98_02455"
                     /EC_number="2.4.2.17"
                     /inference="COORDINATES: protein motif:HMM:NF013773.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003879 - ATP phosphoribosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP phosphoribosyltransferase"
                     /protein_id="HWM60979.1"
                     /translation="VVAVSQYWVDVSTMADLDDVCAVYAQAHRRRLRVATKYAQLTRG
                     FFAQARISDYRIVPSAGATEGAPAAGTAEVIVDITTTGATLRDNGLKILDDGVILKSQ
                     AQLAASLTADWSAEARTACEALLKKLDPANPLYSALSAHLP"
     gene            556..1134
                     /locus_tag="VNN98_02460"
     CDS             556..1134
                     /locus_tag="VNN98_02460"
                     /inference="COORDINATES: protein motif:HMM:NF018894.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0035438 - cyclic-di-GMP binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PilZ domain-containing protein"
                     /protein_id="HWM60980.1"
                     /translation="MTNAQNAPALDRRHTERHAVRLAGRIFVPATRVTLDCIITNLSA
                     GSAGFWCAEPPPLETEIVLYVGGFGRFEGAVTRNFQSEIGVNFACHDAKRKRLEEALA
                     AFVKDGMIAVTRLRRFERAEAGVSLDCFSLASGEEVPCTLLDISLQGASLRTDRRPPI
                     GEVIHLGKTRSWVVRHADEGIGVQFLQRRPAE"
     gene            complement(1139..2494)
                     /locus_tag="VNN98_02465"
     CDS             complement(1139..2494)
                     /locus_tag="VNN98_02465"
                     /inference="COORDINATES: protein motif:HMM:NF013594.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M48 family metallopeptidase"
                     /protein_id="HWM60981.1"
                     /translation="MIFARITGAALLLIALAAPVSAQDAPMQTGPRAAPTAHVQVAPL
                     PGIDTTPAFDSAQATDKYLARISGAARAKSDAYFEGGYWLQLLDLLYALGVAALLLWL
                     QISSRISDWAEERTHSRTWQVMLYVAVYVPLVATATFPLTLYEGFFREHAYGLSNQSF
                     WQWLGDFGIQFALTFIASLLVLPLLYAAIRRTRESWWLWGAGLAIAFQILVVVIGPVF
                     IAPLFNHYSPLPAGPLKTQILSLARADGVPVDNVWLVDASRQSSRVSANVSGFLGTAR
                     ISLNDNLLKQCSPDEVLAALGHEIGHYVMDHATRGILLLGLVILIGFGFVHWGFLFAT
                     DLFGGQWQVRKLSDVAGLPLLAALGSLFLFLATPVTNSIMRTAEYQADIFGLDAVRKP
                     DAFATVMLKLSTYRKLEPGRLEEIIFYDHPSGRTRIETAMRWKKEHIGDPDIRDTAKL
                     P"
     gene            2583..3341
                     /locus_tag="VNN98_02470"
     CDS             2583..3341
                     /locus_tag="VNN98_02470"
                     /inference="COORDINATES: protein motif:HMM:NF024579.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM60982.1"
                     /translation="MLPVYRVVAVALLAGLPAAALAAIGSAKAPPDSAHYRRCLADSS
                     ASPALALTDAEAWAKSGGGVPADHCAALALVSLKRYAEAGARLDRIAGGRAVPGGEFR
                     VALFDQAGNAWLLAGDGARAVQSFSSALTLSAGDADLFADLARAQAMVRNWHEVDLDL
                     NAALQLSPRRADLLVLRASARRALKRYEEARVDIEAALKLRPGDGDALVERGLLRKQL
                     GDIGGARRDFQAALKTASSEAAAEARENIDALNP"
     gene            complement(3331..>4161)
                     /gene="queG"
                     /locus_tag="VNN98_02475"
     CDS             complement(3331..>4161)
                     /gene="queG"
                     /locus_tag="VNN98_02475"
                     /EC_number="1.17.99.6"
                     /inference="COORDINATES: protein motif:HMM:TIGR00276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:0052693 - epoxyqueuosine reductase
                     activity [Evidence IEA];
                     GO_process: GO:0008616 - queuosine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA epoxyqueuosine(34) reductase QueG"
                     /protein_id="HWM60983.1"
                     /translation="ISVYALGDDYHDVVKKKLKALAGYIFQTFQAEVKVFVDTAPVME
                     KPLAQKAGLGWQGKHTNLVSREFGSWLFLGSIFTTLELPPDAAEQDHCGNCHACLDIC
                     PTDAFPAPYQLDARRCISYLTIEHHGPIPREFRAPMGNRIYGCDDCLAVCPWNKFASA
                     ASEMKLAARDELKAPTLSDLATLDDAGFRALFRKSPVKRIGRERFLRNVMIAIGNSGD
                     TELAKPAQAALNDASALVRGAAVWALSRLLSAPDFESLAHSHAAAEPDPQVRAEWIRD
                     "
BASE COUNT          772 a         1263 c         1386 g          740 t
ORIGIN      
        1 gtggtggcgg tgtcgcaata ttgggtcgat gtttcgacca tggcggacct ggacgatgtc
       61 tgcgccgtat atgcccaggc gcaccgccga cggctcaggg tcgcgaccaa atacgcccaa
      121 ctcactcgcg gcttctttgc ccaggcgcga atttccgatt atcgcatcgt gcccagcgcg
      181 ggcgccaccg aaggcgcccc ggcggcgggc accgccgaag tgatcgtgga catcaccacc
      241 accggcgcga ccttgcgcga caatgggctg aaaatcctgg atgacggtgt gatcctgaaa
      301 agccaggcac aactggccgc gtctctcacg gctgactgga gcgcggaagc gcgcacggct
      361 tgcgaggcgt tgttgaaaaa acttgatccg gccaacccgc tttattcggc cctgtcggca
      421 cacctgccct gaggttaacc gtgtttttgg cgggttcgtg gcacggcaag aattgccgtt
      481 atatacccgt ccttaagttc gcaccgctta cattctcccc aagctgcggc cttttgagcg
      541 cgcggaggtg ggacaatgac aaatgcgcaa aatgcgccgg cgctggaccg gcgccatact
      601 gagcggcatg ccgtccgcct ggcgggaagg atattcgtgc ctgcgacccg ggtgacgctg
      661 gactgcatca tcacaaatct gtcggccggt agcgcgggat tctggtgcgc cgaaccaccg
      721 cctctggaaa cagaaatcgt gctgtatgtg ggaggtttcg gacgtttcga aggagccgtc
      781 acgcgcaatt ttcagagcga gattggcgtg aacttcgcct gtcacgacgc caaacgcaaa
      841 cgcctggaag aggcgctggc ggccttcgtc aaggacggca tgatagccgt gacccggttg
      901 cgccggtttg agcgcgctga ggcgggcgta tccctcgatt gtttttccct tgccagcggc
      961 gaggaagtgc cgtgcacctt gttggacatt tcgctgcagg gggcttcgct gcgcacagac
     1021 cggcggccgc ccatcgggga ggtcatccat ctgggcaaga cgcgcagctg ggtggtgcgc
     1081 catgccgacg agggtatcgg cgtccaattt ctgcagcgcc gacccgccga ataaaccgtt
     1141 acggcagctt ggcggtatcg cgtatatcgg gatcgccgat atgctctttc ttccagcgca
     1201 tcgccgtttc gatgcgggtg cggccggagg gatgatcgta gaagatgatt tcctccagcc
     1261 ggccaggctc cagcttgcga taggtcgaaa gcttcagcat cacggtggcg aaggcgtcgg
     1321 gtttgcgcac cgcatccaat ccgaaaatat cggcctggta ttcggcggtg cgcataatgg
     1381 aattggtcac cggcgtggcc aggaacagga acaggctgcc cagcgccgcc agcaggggca
     1441 gtcccgccac atcgctgagt ttgcgcacct gccattggcc gccgaacagg tcggtggcga
     1501 acagaaatcc ccaatggacg aagccgaagc cgatcaggat caccagccct agcagcaata
     1561 tcccacgggt ggcatggtcc atcacataat ggccgatctc atggcccagc gccgccagta
     1621 cttcgtcggg cgagcattgt ttcagaagat tgtcgttcag cgagatgcgt gctgtcccca
     1681 gaaaaccgga gacgttggca gaaacccggc tcgactggcg cgaggcgtcc accagccaga
     1741 cattgtccac cggcacgccg tcggcgcggg ccagcgacag gatctgtgtc ttcagcgggc
     1801 cggcgggcag gggcgaataa tgattgaaga gcggggcgat gaataccggc ccgattacca
     1861 cgaccagaat ctggaaggcg atggcgaggc ccgcgcccca aagccaccag ctttcccgcg
     1921 tccgccggat ggcggcgtac agcagcggca ataccagcag cgaggcgatg aaagtcaggg
     1981 cgaactggat gccgaaatcg cccagccact gccagaagga ctggttggac aggccataag
     2041 catgttcgcg aaaaaaccct tcatacaagg tgaggggaaa tgtcgccgtg gcgacgaggg
     2101 ggacatagac ggcgacatac agcataacct gccaggtgcg gctgtgggtg cgctcctccg
     2161 cccagtcgct gatgcggctg gaaatctgca gccacaagag cagggccgcc acgcccaggg
     2221 catagagcag gtccagcagc tgcagccaat agccgccttc gaaataggcg tcggacttgg
     2281 cgcgggccgc gccgctgatc cgcgccagat acttgtcggt ggcctgggcg gaatcgaacg
     2341 cgggcgtggt gtctatgccg ggcaggggcg ccacctggac atgggcggtg ggcgcggcgc
     2401 gtgggcccgt ctgcatgggc gcgtcctgcg ccgatacagg cgcggccagg gcaataagca
     2461 acaatgcggc gccggtgatg cgtgcaaata tcatgagtgt ttcccttgcc ggcagcctaa
     2521 caggatttca tggcagccaa agcgcttatt gctgatagat tgggtgtgtt atgagcgtga
     2581 caatgttgcc cgtgtatcgc gtcgtggccg ttgctttgct ggccggcttg ccggcggcgg
     2641 cgctggccgc gatcggcagc gcgaaagcgc cgccggattc agcgcattat cgccgctgtc
     2701 ttgcggacag cagcgccagc ccggccctgg cgctgaccga tgccgaggcc tgggccaaat
     2761 ccggtggcgg tgttcccgcc gatcactgcg ccgcgttggc gctggtcagc ctcaaacgtt
     2821 atgccgaagc gggcgcgcga ctggaccgga tcgcaggcgg ccgcgcggtt cccggcggcg
     2881 aattccgcgt ggcgttgttc gaccaggccg gcaatgcctg gctgctggcg ggcgatggcg
     2941 cgcgcgcggt gcaaagtttc tcgtcggccc tcaccttgtc ggcgggcgat gccgacctgt
     3001 tcgccgatct cgcgcgtgcc caggcgatgg tgcgcaattg gcacgaagtg gatttggacc
     3061 ttaacgccgc gctgcagctt tcgccgcgcc gcgccgatct gttggtgctg cgcgccagcg
     3121 cccgccgcgc cctcaagcgt tatgaggagg cgcgcgtcga tatcgaggcg gcgttgaagc
     3181 tgaggccggg cgatggcgat gcgctggtgg agcgcggatt gctccgcaag cagttgggcg
     3241 atatcggcgg ggcgcggcgc gattttcagg cggcgttgaa aaccgcgtcc agcgaggcgg
     3301 ccgcggaggc cagggaaaat atcgacgctc tcaatccctg atccattcgg cgcgcacttg
     3361 cgggtcgggc tcggctgcgg catggctgtg cgccagactt tcaaaatctg gcgccgacag
     3421 cagccgcgac agcgcccaca ccgccgcgcc gcgcaccagg gcggaggcgt cgttcagggc
     3481 agcctgcgcc ggcttcgcca attcggtatc accgctgttg ccgatggcga tcatcacatt
     3541 gcgcaggaaa cgctcgcggc cgatgcgttt gaccggcgac ttgcggaaca aggcgcgaaa
     3601 gcccgcatcg tccagcgtcg cgagatcgga cagggtcggc gctttgagtt catcgcgcgc
     3661 cgccagtttc atctccgacg ccgcgctggc gaacttgttc cagggacaca ccgccaaaca
     3721 gtcgtcgcag ccatagatgc gattgcccat aggggcgcgg aattcgcgcg gaatggggcc
     3781 gtgatgctcg atggtgagat aggaaatgca gcgccgcgcg tccagctggt aaggcgcggg
     3841 aaaggcatcg gtggggcaga tatccagaca ggcgtgacaa ttgccgcaat gatcctgttc
     3901 cgccgcatcc ggtggcagtt ccaaggtggt gaagatgctg cccaggaaca gccaggagcc
     3961 gaactcgcgc gacacaagat tggtgtgctt gccctgccag cccagccccg ctttctgggc
     4021 cagcggcttt tccatcaccg gcgcggtgtc gacaaagact ttcacctcag cctggaaggt
     4081 ctggaagatg tacccggcca gcgccttgag cttctttttc accacatcgt gatagtcgtc
     4141 gcccagggca tagaccgaaa t
//
LOCUS       DATMDK010000125         3893 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1658486,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000125 DATMDK010000000
VERSION     DATMDK010000125.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3893)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3893)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3893
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1658486"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..630)
                     /locus_tag="VNN98_02480"
     CDS             complement(<1..630)
                     /locus_tag="VNN98_02480"
                     /inference="COORDINATES: protein motif:HMM:NF028129.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5074 domain-containing protein"
                     /protein_id="HWM60984.1"
                     /translation="MKHVSVFVLFASLAAATASYAQTPAYHVTKTVALGSPDRWDYLV
                     YDGPSHRLYVSHGDRVSVVDGRDGTVLGAVEGMPGGTHGIGIVTAAGKGYTDDGKAGE
                     AVAFDLKTFKTGKHIKAQDDADGIAFDPTSGHIFVVDGDSKVLTVIDPATDSAIATVN
                     AGGGLEYAVAGNNGKLYVDGAENKEIVRIDTAKNVVDAHWPIPGCTSPHG"
     gene            complement(755..1441)
                     /locus_tag="VNN98_02485"
     CDS             complement(755..1441)
                     /locus_tag="VNN98_02485"
                     /inference="COORDINATES: protein motif:HMM:NF013718.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatase PAP2 family protein"
                     /protein_id="HWM60985.1"
                     /translation="MKYAVLILASSMLCVGAAQAALLDPATIQPGQFLPPPPVEGSPD
                     AKAEMKEVNDIIVRSSAGDIAAAAKDDADENPDIFNGAIGFDVKTRPETFKLLTMVMN
                     EEEGDTKAAKVFFHRKRPWVIDPAVKTCTLEKLNQVPNSYPSGHATLAFSLAPVLTHL
                     FPEKSQVILARASEYAEHRLVCGMHFRSDIVASQQYGTILALRLMETPAFMAQMQASQ
                     KELHQTVAGK"
     gene            1610..2248
                     /locus_tag="VNN98_02490"
     CDS             1610..2248
                     /locus_tag="VNN98_02490"
                     /inference="COORDINATES: protein motif:HMM:NF020348.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme-binding beta-barrel domain-containing
                     protein"
                     /protein_id="HWM60986.1"
                     /translation="MADPQIPDDIFTEPEDVSPDTLANLGPLRRLAGVWEGRGGVDIN
                     PKAEGPERREYTERITLQPIDPQANGPQLFYGLRYHTRILATDEAATFHDQVGYWLWE
                     PATGLVLQSLAIPRGQVAIASGQAAADAARLVLCATRGQTEYGICSTTFLEQAFRTDS
                     YRIEVIFNADGSWSYILDTILMVHGRAEPFHHRDQNTLIKVAEPKPNPLTQS"
     gene            complement(2259..>3893)
                     /locus_tag="VNN98_02495"
     CDS             complement(2259..>3893)
                     /locus_tag="VNN98_02495"
                     /inference="COORDINATES: protein motif:HMM:NF017021.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AsmA family protein"
                     /protein_id="HWM60987.1"
                     /translation="FGHLVLPLVKIDQPDILLVRGASGRTNWDRGNQNPNEAWQPPPI
                     QRFLVKDGHVRIDDAVRKLHFRGTVSSSEELDGKGAAFTLLGDGTLNQNKFMADVKGG
                     PLLHVDETKPYAFTADVHSGDTHAVINGAVTQPFHLDRFTASMNISGPTLSDLFFLTG
                     LVLPRTPPYHLTVAVERDGANYRLNDINALLGGTDLHGNLMVDASGRIPALAGKVASR
                     VLNFPDLGPLVGGGKAAPVQSKYLLPETVLHTERLRLSNAEVDYSALAITSRDFPLKG
                     LDTHISVKDGVLNLRPLAFGFTQGKLSGSIKVDARKDIPTTTLDARITDIHAENFIKG
                     GDKPLQGVLEARAVLTGRGNSVHAAASTASGTFTAVVPSGGMRHSLAEWTGVDVLTAL
                     SLNLGGDNSNTNLRCAVAGFGAKDGVLTAQQFVIDTDPVRVDGSGTINLRDETLDLRL
                     QGKPKNFQIMRLRAPITVKGSMAHPALGMAPGGAITQGGIGLALGLINPLAAILAFVD
                     PGLAKDANCGPLLATAKAQGAPVRTSAINKAPVPRK"
BASE COUNT          701 a         1242 c         1201 g          749 t
ORIGIN      
        1 gccgtgcgga ctggtgcagc ccgggatcgg ccaatgcgca tcgaccacat tcttggcggt
       61 gtcgatgcgg acgatttcct tgttctccgc cccatcgaca tagagcttgc cgttgttgcc
      121 tgcgaccgca tattccaggc cgccgccggc attgacggtg gcaatcgcgc tgtcggtggc
      181 cggatcgatc acggtgagga ccttggagtc cccgtccacc acaaagatgt gaccgctggt
      241 gggatcaaag gcgatgccgt cagcatcgtc ttgcgccttg atgtgcttgc cggtcttgaa
      301 agtcttgagg tcgaaggcga ccgcctcccc cgccttgccg tcgtcagtgt aacctttgcc
      361 cgcagccgtc acgataccga tgccgtgggt cccgccgggc atgccttcga cagcgcccag
      421 aacggttcca tcccggccat cgaccacact cacccggtcg ccatgcgaga catacaggcg
      481 atgcgacggg ccgtcataga ccagataatc ccaacggtcc ggcgatccca gcgccacggt
      541 tttcgtaacg tgataggcgg gagtttgcgc ataggacgcc gtggctgccg ccaaacttgc
      601 gaacagaaca aataccgaga cgtgtttcat ctgcgatcct ttgctggttt cagactggcg
      661 caggatatac cagccgcaca ggttcatggc gccattgggg aaatttataa ggcgtctatt
      721 gttctgcttt tgctggcctt tgccgcacgc ggctttattt accggcgacg gtctggtgca
      781 gttccttttg cgacgcctgc atctgcgcca tgaaggcggg ggtctccatc agccgaagcg
      841 ccaggatcgt tccatattgc tggctggcga cgatgtcgct gcgaaaatgc atgccgcaca
      901 ccaggcggtg ctcggcatat tcggaggcgc gcgccaatat gacctgcgac ttttcaggaa
      961 acagatgggt cagaaccggc gccagggaaa aggccaaagt ggcatggccg ctgggatagg
     1021 aattggggac ctggttcaat ttctccaagg tacaggtctt caccgccgga tcgatcaccc
     1081 atggccgctt gcgatgaaaa aagaccttgg cggctttggt gtcgccctct tcttcgttca
     1141 tcaccatggt cagcagcttg aaggtttccg gccgcgtctt cacatcaaag ccgatcgcgc
     1201 cgttgaagat atccggattc tcgtcggcat cgtccttggc cgccgcggcg atgtcgcctg
     1261 cgctgctgcg tacgatgatg tcattgactt ctttcatttc ggccttggcg tcgggtgaac
     1321 cttcgacggg cgggggcggc aggaactggc cgggctgaat ggtggcggga tccagcaagg
     1381 cggcctgggc cgctcccacg cacagcatcg acgaagcaag tatcagcacg gcatacttca
     1441 tatcagtctc ctgaacgggg ggccccgacc ggaccatcca acggcaagtg ccatgaaatt
     1501 ctgacggttg gatgacagac ggcgcacgcc actggggata gtcggcaggc cgtgatacca
     1561 gaaagctgga tcacttgacg aaaccggcgc aaatcggctt cgttgaccca tggccgatcc
     1621 ccagattccc gacgacattt tcaccgaacc ggaggacgtc agccccgata ccttggccaa
     1681 tctgggtccg ttgcgccgct tggcgggcgt ctgggagggc cgcggcggcg tggatatcaa
     1741 tcccaaggcc gagggaccgg agcgccgtga atataccgag cggatcacgc tgcaaccgat
     1801 cgatccccag gccaacgggc cgcagctgtt ctacggtctg cgttaccaca cccgtatcct
     1861 ggcgacggac gaagcggcga ccttccacga ccaggtcggc tattggctgt gggagcccgc
     1921 caccggactg gtgctgcaga gcctggccat accgcgcggc caggtggcca tcgcatcggg
     1981 tcaggcggcg gcggacgccg cccgattggt gctgtgcgcg acgcgcggcc aaaccgaata
     2041 cggcatttgc tcgaccacct tcctggagca ggccttccgc accgactcct atcggatcga
     2101 agttattttc aacgccgatg gcagttggag ctatatcctg gacaccattc tcatggtgca
     2161 tggccgcgcc gaacccttcc atcaccgcga tcagaacacc ttgataaagg tggccgagcc
     2221 caagcccaat ccgctgaccc agtcctgacc ggaacccgct acttgcgcgg gaccggcgcc
     2281 ttgttgatcg ccgaagtcct gaccggcgca ccctgcgcct ttgccgtcgc caacagcggc
     2341 ccgcaattgg cgtctttggc caggcccgga tcgacgaagg ccaggatcgc cgccagcgga
     2401 ttgatcaagc ccagcgccag gccgatgccg ccctgggtga tcgcgccgcc cggcgccatc
     2461 cccagcgccg gatgcgccat gctgcccttc actgtgatcg gggcgcgcag ccgcatgatc
     2521 tggaaattct tcggcttgcc ttgcaaccgc aaatccagcg tctcatcgcg cagattgata
     2581 gtgccgctgc cgtccacccg caccggatcg gtgtcgatca cgaattgctg cgccgtcagc
     2641 acgccatcct tggctccgaa accggccacg gcgcagcgca ggttggtgtt ggaattgtcg
     2701 ccgccgagat tgaggctcag cgctgtcagc acgtccaccc cggtccattc cgccaggctg
     2761 tggcgcatgc cgccgctggg caccacggcg gtgaaggtgc cgctggcggt ggaggcggcg
     2821 gcgtgcaccg aattgcccct gccggtcagc accgcccgcg cctccagcac gccttgcagc
     2881 ggcttgtcgc cacccttgat gaaattctcg gcatggatgt cggtgatgcg cgcgtccaag
     2941 gtggtggtgg gaatgtcctt gcgggcgtca accttgatcg agccgctgag cttgccttgg
     3001 gtgaatccga aagccagcgg cctcaggttc agcaccccat ccttcacgct gatatgggtg
     3061 tccaggccct tcagcgggaa gtcgcgcgac gtgatggcca gcgcgctgta atccacttct
     3121 gcattgctca ggcgcagccg ctcggtgtgc agcacggttt cgggcaacag atacttgctt
     3181 tgcaccggcg ccgccttgcc gccgcccacc agcgggccca gatcggggaa attcaacacc
     3241 cgcgacgcca ccttgcccgc cagggcggga atcctgcccg aagcatccac catcagattg
     3301 ccgtgcagat cggtgccgcc cagcaaggca ttaatgtcgt tcagccggta attggcgccg
     3361 tcgcgctcga ccgccacggt caagtgatag ggcggtgtgc ggggcaagac caatccggtc
     3421 aggaaaaaca ggtcggacag ggtcggaccg ctgatgttca tgctggcggt gaaacggtcg
     3481 agatggaacg gctgggtgac ggcgccattg atcacggcat gggtgtcgcc cgaatgcacg
     3541 tcggcggtga aggcataggg cttggtttcg tccacatgca gcagcggccc gcccttcaca
     3601 tcggccatga acttgttctg gttcagggtg ccgtcgccga gcagagtgaa ggccgcacct
     3661 ttgccgtcca gctcctcgct tgaactgacc gtgcccctga aatgcagctt gcgcaccgca
     3721 tcgtcgatcc gcacatggcc gtccttgacc agaaagcgct gtatcggcgg cggctgccag
     3781 gcttcgttag ggttctggtt gccccggtcc caattggtgc gcccgcttgc gccgcgcacc
     3841 agcagaatgt cgggctggtc gatcttgacc agcggcagga ccagatggcc gaa
//
LOCUS       DATMDK010000126         4025 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_971839,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000126 DATMDK010000000
VERSION     DATMDK010000126.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 4025)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4025)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4025
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_971839"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1494)
                     /locus_tag="VNN98_02500"
     CDS             complement(<1..1494)
                     /locus_tag="VNN98_02500"
                     /inference="COORDINATES: protein motif:HMM:NF012264.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HWM60988.1"
                     /translation="MRLRWILVTVILLVVLAGAGYALFLPGLSVARQEPSRLEVKVAT
                     WLLHASVPASAKSAFNPLGQKPDPAAIQAGHDLFTKRCETCHAYDGGGKTELGAGIFP
                     RPPVLHALAPSLTDGEIFYHIRNGIRNTAMPAWNFPDAQVWQLVSYIRHLAIVASPKD
                     SDIAARQEAAVQSAHYVGSQACASCHQEIYARWQKTRMANIVRDPKVHPDAIIPDLSK
                     ADPAIVKFTKDDIAFVYGSKWKQRYFKKAGDTYVPLPAQYNIDTKRWSKYHVPDTGDW
                     WAVKYLDPAGDNSARPTGPTCDGCHSVNYNIDTKQVSEWNVGCEQCHGAGSDHVQDPK
                     RFNILNPARQNYVQANDTCIQCHSQGQPLSNPIKGKYYDWPVGYHAGLKLVDYWKLEP
                     HKLGETTFTHFPDGTAHKNRMQGNDFVQSLMYTRGVTCFSCHDPHGSENDAMLRKPAD
                     QVCGTCHSLNNQNGPHAASLEEHTHHRAGSPGSQCVACHMPKILPELP"
     gene            1553..2755
                     /gene="chrA"
                     /locus_tag="VNN98_02505"
     CDS             1553..2755
                     /gene="chrA"
                     /locus_tag="VNN98_02505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004896675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015109 - chromate transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015703 - chromate transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chromate efflux transporter"
                     /protein_id="HWM60989.1"
                     /translation="MGGTGKQHSGWEIFGIFLRLGLTSFGGPIAHLGYFRDEFVVRRQ
                     WVDEHAYAGLVGLCQFLPGPASSQVGFALGLSRRGLAGGLAAWLGFTLPSAVLLFAFA
                     TLSAAFTGAAADAAIHGLKIVAVAVVAQALWGMARSLTPDLQRIAIAAAAALTVSLLA
                     GSFGQIAAIALGAAAGLILCRGIALPRRGSLSFTISRPVAMAALGAFFLILLAGPLLA
                     LLLRSHTLAVFNAFYRSGALVFGGGHVVLPLLSDALVRPGLISPASFLAGYGAAQAVP
                     GPLFTVSAYLGTMLNGPPNGALGAAIALVAIFLPGMLIMTGTLPFWEGLRSRPGLQAA
                     MRGINASVVGILATALYTPLWTSAIDGVRDMALAVAGFVLLTLAKLPPWLVVAGTVAA
                     SIALAQMR"
     gene            2899..3438
                     /locus_tag="VNN98_02510"
     CDS             2899..3438
                     /locus_tag="VNN98_02510"
                     /inference="COORDINATES: protein motif:HMM:NF013460.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0022904 - respiratory electron transport
                     chain [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome b"
                     /protein_id="HWM60990.1"
                     /translation="MASTAAPGYGPVAKTLHWLIFALLAVQYAIGSIMPHIGRKTVNE
                     GWVSWHFSVGAAILFFIVIRLAWRLTHPVPQLATLAPWEKIASAITHWSLYLLVLAMT
                     VLGWAATNSRGWDVKLFGVVTLPELAPKGSKWGHECGDIHNILVYVLLGFIALHVAGA
                     LYHYFVKHDRVVARMPPST"
BASE COUNT          672 a         1305 c         1182 g          866 t
ORIGIN      
        1 cggcagttcc ggcaggatct tgggcatgtg acaggcaacg cattggcttc ccggcgaacc
       61 tgccctgtga tgggtatgtt cttccaggct ggccgcatgt gggccgttct gattgttcaa
      121 gctgtgacag gtgccgcaca cctgatccgc cggcttgcgc agcatggcat cgttttcgct
      181 gccatgcgga tcgtggcaac tgaaacaggt cacgccccgc gtatacatca ggctctggac
      241 gaaatcattg ccctgcatgc ggttcttgtg cgccgtgccg tcagggaaat gggtgaaggt
      301 ggtttcgccc aacttgtgcg gctccagctt ccaataatcc accagcttca gccccgcatg
      361 atagccgacc ggccagtcgt aatacttgcc cttgatcgga ttgctcagcg gctggccctg
      421 ggaatggcac tggatgcagg tgtcattggc ctggacataa ttctgccgcg ccggattcag
      481 aatgttgaac cgcttggggt cctgcacatg atcgctgccc gcgccgtggc actgctcgca
      541 gcccacattc cattcgctga cctgtttggt gtcgatgtta taattgaccg aatggcagcc
      601 atcgcaggtt ggccctgtgg ggcgggccga attgtcgccc gccggatcga gatacttgac
      661 ggcccaccag tcgcccgtgt ccggcacgtg atacttcgac catctcttgg tatcgatatt
      721 gtattgcgcc ggcagcggca cataggtgtc gcccgccttc ttgaaataac gctgcttcca
      781 cttgctgcca tagacgaatg cgatatcgtc cttggtgaat ttcacgatgg ccgggtccgc
      841 cttgctgagg tcgggaatga tggcgtcggg atggactttg ggatcgcgca cgatgttcgc
      901 catcctggtc ttctgccagc gggcataaat ctcctggtgg caactggcgc aggcttgcga
      961 gccgacataa tgggccgact gcacagcagc ctcctgccgc gccgcgatgt cgctgtcttt
     1021 cggcgacgcc acaatggcga gatggcggat ataggagacc agctgccaca cttgcgcatc
     1081 gggaaaattc cacgccggca tcgccgtgtt ccggatgccg ttgcggatgt gatagaaaat
     1141 ctcgccatcc gttaaagaag gcgccagtgc gtgcagcacc ggcgggcgcg ggaagatccc
     1201 tgcccccaat tcggtcttcc cgccgccgtc ataggcgtgg caggtctcgc accttttggt
     1261 gaacaggtca tgcccggcct ggatcgcggc gggatcgggc ttctggccca gcggattgaa
     1321 ggcgctcttt gcggaggccg gcacactggc atgcagcagc catgtcgcga ccttgacttc
     1381 cagccgcgac ggttcctgcc gcgctaccga caggccgggc aggaacaagg cataacctgc
     1441 gcccgccagc actaccaaca gaataactgt gaccagaatc cagcgaagac gcatgtcaaa
     1501 tcctccccgg cgttcttatg attctgttat atcatgctct aggatgccac ccatgggcgg
     1561 gaccggcaaa caacattcgg gatgggagat ttttgggata ttcctccgcc tgggcctgac
     1621 atccttcggc ggtcccatcg cgcatctggg gtatttccgc gatgaattcg tcgtcaggcg
     1681 tcaatgggtg gacgaacacg cctatgccgg tctggtgggg ctgtgccagt ttctccccgg
     1741 cccggccagc agccaggtag gtttcgcact gggcctgtca cggcgcggcc tggccggagg
     1801 cctggcggcg tggctgggct tcacccttcc ctccgccgtc ctgctttttg ctttcgccac
     1861 gctgtccgcc gccttcaccg gtgctgccgc cgatgcggcc attcatggcc tgaagatcgt
     1921 cgccgtcgcg gttgtcgccc aagcgctgtg gggcatggcc cgcagcctca cgcccgacct
     1981 ccagcgcatc gccatcgcgg cggctgccgc gctcaccgtc tcgctccttg ccggatcgtt
     2041 cggccaaatc gccgccatcg cattgggcgc agcggccggc ctcatcctgt gccgcggcat
     2101 cgccctgccc cggcgcggaa gcctctcctt caccatctcc cgtcctgtgg cgatggccgc
     2161 actgggcgct ttcttcctta tccttctggc aggaccgctt ctcgccctcc tgctgcgcag
     2221 ccataccctt gcggtgttca acgcctttta ccgttccggc gcactggtgt tcggcggcgg
     2281 tcatgtcgtc ctgccgctgc tgagcgatgc gttggtccgc ccgggcttga tatcgcccgc
     2341 atctttcctc gcgggatacg gcgccgctca ggcggtgccg gggccgctct tcaccgtttc
     2401 cgcctatctc ggcaccatgc tgaacggacc gcccaacggc gcgctcggcg ccgccatcgc
     2461 actggtggcg atcttcctgc ccgggatgct gatcatgacg gggacattgc cattctggga
     2521 gggcttgcgc agccgccccg gtcttcaggc cgcgatgcgc ggcatcaatg cctcggtggt
     2581 cggcattctg gccaccgcgc tttatacccc gctctggacc agcgcgatcg acggggtacg
     2641 ggacatggca ttggcggttg cgggctttgt gcttctcacc ttggcaaagc ttccgccctg
     2701 gctggtcgtt gccgggaccg tcgccgcatc catagcattg gcacagatgc gttagacctc
     2761 gtcacaggtc gcggcacaca tgcccctcat tatcagttgc aagatgccgg cgcaccagat
     2821 tgagccaaat caacttgccg cacctcgccc cggccttact atggagcggc ctgcgctacg
     2881 tatataaagg agaagaacat ggcctcaacc gctgcgcccg gttatggacc agtcgccaaa
     2941 accctgcact ggctgatctt cgcgctgctg gcggtacagt atgccatcgg ctcgatcatg
     3001 ccccatatcg gccgcaagac cgtgaacgaa ggctgggtct cctggcactt ctcggtcggc
     3061 gccgcgatcc tcttcttcat cgtcatccgc ctggcctggc ggctgaccca cccggtgccg
     3121 cagcttgcca ctcttgcgcc gtgggaaaag atcgcttccg ccatcaccca ttggtcgctc
     3181 tacctgctgg tgctggcgat gaccgtgctg ggctgggccg ccaccaattc gcgcggctgg
     3241 gacgtcaagc tgtttggcgt cgtcaccctg cctgaactcg cgcccaaggg gtcgaagtgg
     3301 ggccatgaat gcggcgacat ccacaatatc ctggtctatg tcctgctggg attcatcgcc
     3361 ttgcacgtcg cgggcgcgct ctatcattat ttcgtcaagc acgatcgggt ggtcgcccgc
     3421 atgccgccga gcacctgaca tccacaccca accattgcac tcgccgtcag ttcaggctca
     3481 cggtgatgtg gatgcagccc agcaccatgc catcatcgcc gcggatcagc ccggcggcga
     3541 cgcagtataa ttaaagtgat ggcgcaagct cagagatttc gtacgaaaca ggtgataatt
     3601 tcgtacaaag aatagtcctt tttccccgct tctgaacagc cacaatcgga aaataagccc
     3661 tgtttcaggc gctttcctga gttccatcgc ttcgtggcgc attggcttaa agcaagcgcg
     3721 aacagcagct tccaaccgtt cattgaacgg ctaggttttg tacgttttta gcgccattcc
     3781 cagaccgact cgcgcattgc aatccccccg cttaagccta ggttcaacgc gcatcctggt
     3841 ggcaaggagc tttggcggac gcggcacgcg cgccggccct taaggggacg atcggtgctc
     3901 gcgcagtcaa tggcaggcaa caagattctt gcgggtctca cgccagacga tttcgcgctg
     3961 ctgcagcccg acctcgaagc ggtggaattg ccggtgcgcc gccagcttga attgcgcaac
     4021 cgcac
//
LOCUS       DATMDK010000127         3585 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_972232,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000127 DATMDK010000000
VERSION     DATMDK010000127.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3585)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3585)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3585
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_972232"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(235..864)
                     /gene="upp"
                     /locus_tag="VNN98_02515"
     CDS             complement(235..864)
                     /gene="upp"
                     /locus_tag="VNN98_02515"
                     /EC_number="2.4.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014471148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004845 - uracil phosphoribosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0009116 - nucleoside metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uracil phosphoribosyltransferase"
                     /protein_id="HWM60991.1"
                     /translation="MQGVTVVDHPLVQHKLTLMRDKTRSTKNFRELLNEIGMLICYEI
                     TRDLPMTTVEIETPMARMTAPSIEGKKLVFAPILRAGVGFLDGMMNLVPSARVAHIGL
                     YRDPNTLESIEYYFKAPEDVADRLVIVMDPMLATGNSAVAAVDKLKARGVRKLRLMCL
                     LAAPEGIETFHKAHPEIHIWTAAVDEKLNEHGYILPGLGDAGDRMFGTK"
     gene            1053..2390
                     /locus_tag="VNN98_02520"
     CDS             1053..2390
                     /locus_tag="VNN98_02520"
                     /inference="COORDINATES: protein motif:HMM:NF019604.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HWM60992.1"
                     /translation="MGLRPHLPNGAGLAPAQIEDNFADLTPPLTATLAKSYASQCLYC
                     YDAPCIKACPTGIDIPTFIHQIRSGNLKGSAQTILSANIMGGTCGRACPTEVLCEQAC
                     VLNARGEEPVKIGLLQRHAVEKRIAAGGDHLFVRAAPSGKRLAVVGAGPAGLSFAHRA
                     AMLGHGVTVFEARPKPGGLNEYGLAAYKMANDFAQKEVEFLLGIGGIKIEYDKALGGD
                     QTLAALREQFDAVFIGLGTTAVNRLSLPGSDLQGVEDALGFIETLRQAKDKSKINPAK
                     NVVVIGGGNTAIDAAVQAKRLGAENVTLVYRRGADAMSATAWEQDLARTNDVVLKLWA
                     MPIRFEKDDRGAVGAAVFEKTALVDGKLGGTGESFTLPADLVLKAIGQTLAPLDGVRI
                     EGGKIWVDGNFQTSLPGIFAGGDCISSGEDLTVQAVEDGKRAAIAADAYLRSA"
     gene            2390..>3585
                     /gene="preA"
                     /locus_tag="VNN98_02525"
     CDS             2390..>3585
                     /gene="preA"
                     /locus_tag="VNN98_02525"
                     /EC_number="1.3.1.1"
                     /inference="COORDINATES: protein motif:HMM:NF006183.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0017113 - dihydropyrimidine dehydrogenase
                     (NADP+) activity [Evidence IEA];
                     GO_process: GO:0006210 - thymine catabolic process
                     [Evidence IEA];
                     GO_process: GO:0006212 - uracil catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent dihydropyrimidine dehydrogenase
                     subunit PreA"
                     /protein_id="HWM60993.1"
                     /translation="MADLHCSIGGVESINPFWLASAPPTDKYINVKRAFEAGWGGVVW
                     KTLGVDPPVVNASSRYGVHRDERGGIVGINNIELISDRPLDENLREIERLRREYPDRV
                     IIGSLMAPIEEDAWKGLAEKILNAGVQGLELNLGCPHGMCERGMGSAVGQVPEMVEQT
                     TRWVKTVAGKLPVFTKLTPNITDIVVPAEAARRGGADGVALINTVNSIVSVDLNSMAP
                     TPMVDGKGTHGGYCGTAVKPIALNMVSAIARDPETAALAISAIGGITTWRDAAEFIAL
                     GAQGVQVCTAAMLYGFRIVDDMIAGLTNFMEENQYRSIGDFRGRAIRNTVDWNELNLN
                     FDLKALIHQDKCIECGRCHIACEDAAHQAIRIGAGANGHRTFTVINDECVGCNLCQHV
                     CPVENC"
BASE COUNT          686 a         1128 c         1145 g          626 t
ORIGIN      
        1 ctgcggttga cgcgcaagga gtcgatgacg tcgccgtcga aggcgatgcc cggattgcgg
       61 tcgtcggaag aaccgatatc cggcgcattc tcgcggttaa gtggctgaat tttcagcata
      121 ttacttccag gccgggcggc cgggtcccgt tccattaaac cgccggggca atatccccga
      181 acggcgaaag gcccattcaa tcacggctgc gggggagaat acaaagccgg attactactt
      241 ggttccgaac atgcggtcgc ccgcatcgcc caggccgggc aggatatagc cgtgctcgtt
      301 gagcttctcg tccaccgccg cggtccagat atggatctcg ggatgggcct tatgaaatgt
      361 ctcgatcccc tccggcgccg ccagcaggca catcagcctg agtttcctca ccccccgcgc
      421 cttgagcttg tccactgccg ccacggcgga atttcccgtc gccagcatgg ggtccatcac
      481 gatcaccaga cggtcggcca cgtcttccgg tgccttgaag taatattcga tgctctccag
      541 cgtgttggga tcgcggtaga gaccgatatg ggccacgcgc gccgacggca ccagattcat
      601 catcccgtcc aggaagccga cgccggcgcg caggatgggc gcgaagacca gcttcttgcc
      661 ctcgatggac ggcgccgtca tccgggccat cggggtctcg atttccaccg tggtcatggg
      721 caggtcgcgg gtgatctcgt agcagatcag catgccgatc tcgttcaaca gctcgcggaa
      781 attcttggtg gaacgggtct tgtcccgcat cagggtcaat ttgtgctgca ccagcggatg
      841 atcgacgacg gtgacgccct gcataggaac tccgaaaaag cggacagcgg gagttgtcct
      901 aacacccggc tccaggggca ggaaggcggc agcggccctg ctcaacagac atttcaaggc
      961 cgcaaccaga cggcaatttt gtgtggcatc gcaccatcag acgcgcttaa ctggcttttt
     1021 gggggcccgg gaggggccag aaagttgctg tcatgggcct tcgcccacac ctgccgaatg
     1081 gcgcggggct ggcccccgct cagatcgaag acaatttcgc ggacttgacg ccgccgctca
     1141 cggccaccct ggccaagagc tatgccagcc aatgcctcta ttgctatgac gcgccctgca
     1201 tcaaggcctg tcccaccggc atcgacatcc ccaccttcat ccaccagatc cgcagcggca
     1261 acctcaaggg ttcggcccag actatcctgt cggccaacat catgggcggc acctgcggcc
     1321 gggcctgtcc caccgaagtc ttgtgcgagc aagcctgcgt cctgaacgcc cgcggcgagg
     1381 agcccgtgaa aatcggcctg ctccagcgcc atgccgtgga aaagcgcatc gcggcgggcg
     1441 gcgatcatct ctttgtccgc gccgcgccca gcggcaagcg gctggcggtg gtgggggcgg
     1501 gaccggcggg cctgtccttt gctcaccggg ccgcgatgct gggccatggc gtgacggtgt
     1561 tcgaagccag gccgaagccg ggcgggctga acgaatatgg cctggccgct tacaagatgg
     1621 cgaacgactt tgcgcagaag gaagtggagt tcctgctcgg catcggcggc atcaagattg
     1681 aatatgacaa agccttgggc ggcgaccaga cgctggccgc gctgcgcgag caattcgatg
     1741 cggtgttcat cggcctcggc actaccgcgg tgaaccgcct cagccttccc ggcagcgatc
     1801 tccaaggcgt ggaggatgcg ctgggcttca tcgagacgct gcgccaggcc aaggacaagt
     1861 ccaagatcaa ccccgcaaag aatgtggtgg tgatcggcgg cggcaacacc gccattgatg
     1921 cggcggtgca ggccaagcgc ctgggcgccg agaatgtcac cctggtctat cgccgtggcg
     1981 ccgacgccat gagcgcgacg gcatgggaac aggaccttgc ccgcaccaat gacgtggtcc
     2041 tgaaattatg ggcgatgccc attcgatttg aaaaagatga ccgaggcgcg gtcggcgccg
     2101 cggtgtttga aaagaccgct ctggtggacg gcaagctggg cggcaccggc gagagtttca
     2161 ccctccccgc cgatctggtg ctcaaggcca ttggtcaaac gctggcgccg ctggacggtg
     2221 tgcggatcga aggcggcaag atctgggtgg atggaaattt ccagacctcc ctgcccggta
     2281 ttttcgcggg cggcgactgc atttcgtccg gcgaagatct gaccgtgcag gcggtggaag
     2341 acggcaagcg tgccgccatc gccgccgacg cctatttgcg gagcgcctaa tggccgatct
     2401 tcactgcagc atcggcggcg tggaaagcat caatcccttc tggctggcct ccgccccgcc
     2461 caccgacaaa tacatcaacg tcaaacgcgc ctttgaggcg ggctggggcg gcgtggtgtg
     2521 gaagaccttg ggagtggacc cgccggtggt caacgcctcc agccgctatg gcgtgcaccg
     2581 cgacgagcgg ggcggcattg tcggcatcaa caatatcgag ctgatttcgg accggccgct
     2641 ggacgaaaat ctgcgcgaaa tcgagcggct gcggcgcgaa tatcccgacc gcgtcatcat
     2701 cggctcgctg atggcgccga tcgaggaaga cgcctggaaa ggcctggcgg aaaagattct
     2761 caatgccggg gtgcagggac tggaactgaa tctgggctgc ccgcacggca tgtgcgagcg
     2821 cggcatgggc agcgcggtgg gccaggtgcc tgagatggtg gaacagacca cccgctgggt
     2881 gaagacggtg gccggcaagc tgccggtctt caccaagctc acccccaaca tcaccgacat
     2941 cgtggtgccg gcggaagcgg caaggcgcgg cggcgccgac ggcgtggcac tgatcaacac
     3001 ggtcaactcc attgtctcgg tggatttgaa cagcatggcg cccaccccca tggtggacgg
     3061 caagggcacc catggcggct attgcggtac cgccgtgaag cccatcgccc tcaacatggt
     3121 atctgccatc gcgcgcgatc cggaaaccgc ggcgctggcg atttccgcca tcggcggcat
     3181 caccacctgg cgcgacgccg ctgagttcat cgccctgggc gctcagggcg tgcaggtctg
     3241 taccgctgcc atgctctacg gctttcgcat cgtggacgac atgatcgccg gactgaccaa
     3301 cttcatggaa gagaaccaat atcgcagcat cggcgatttt cgtgggcgcg ccatccgcaa
     3361 cacggtggat tggaacgaat tgaatttgaa cttcgacctc aaggccctta tccaccagga
     3421 caaatgcatc gagtgcggcc gctgccacat cgcctgcgag gacgcggcgc accaggcgat
     3481 ccgcatcggc gccggcgcga acggccatcg caccttcacc gtcatcaatg acgagtgcgt
     3541 ggggtgcaat ctgtgccagc atgtctgccc cgtcgaaaac tgcat
//
LOCUS       DATMDK010000128         2207 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_746784,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000128 DATMDK010000000
VERSION     DATMDK010000128.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2207)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2207)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2207
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_746784"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1360
                     /locus_tag="VNN98_02530"
     CDS             <1..1360
                     /locus_tag="VNN98_02530"
                     /inference="COORDINATES: protein motif:HMM:NF025179.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="GNVR domain-containing protein"
                     /protein_id="HWM60994.1"
                     /translation="EYESVAQLIVRFGDRSIPDVDRSQVTELTPSDRREIVLAHAAML
                     GSHDLAERTVKSFGIATLYPDIAANPPSRWSPLNEAVKQFGNRLNVDVGTQDNVITVS
                     FLHPDKVLATKVVKKLIDLYIAGESSIYQNPQQSFLKSEVKQAGDRLATAQAALEKFK
                     DQWRVTDYDQETADLLKQRGDVDINLRTAQASLALAQNRAQDLARQMRKVPAIQAEPA
                     SGEKYRALDDAKTQLGALRLKRSQMLATYAPTSPAMTTIDAGIAAAQEQVQAREGELA
                     ARSSSTPNTVYQSLQTDFLRNAADAQSNSGPVKVLTDQLAAVDQRLHDLQQNRGSFDN
                     LTRARQIAEDTYKSLSQRYEDARVKSNLNEQGISPASIISQPTIPYRPARPQKLIILA
                     ACLFCGMILGVGAALLKEAFNNRFSTAEQVAVFLDIPVIASFERDQRHVESALLGYGS
                     PS"
     gene            1357..2070
                     /locus_tag="VNN98_02535"
     CDS             1357..2070
                     /locus_tag="VNN98_02535"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM60995.1"
                     /translation="MNMQANLARAAHPENQLSRKHEFRELDLHVPEELPIVDLVELYT
                     GIENVLETGRCPILQLVGAGADCAPIALDLAWTAASVMGKRVLLLNCASSGSRLPAMA
                     GVEARRRAEPGEVRAAAMDRMIKVAGQEIYMVDIVGSPKEANAGHAVEMVNSYFDAYC
                     AFLDMVFVVPPPAESDPLGTIMARHVDGNILVVEANYTRRAEAMRLREVLVRSGRPLI
                     GAILNNRHNHLPLWLSRRL"
BASE COUNT          434 a          701 c          672 g          400 t
ORIGIN      
        1 ggaatatgaa tccgttgccc agctcatcgt ccgtttcggc gaccgctcga ttccggatgt
       61 cgatcgttcc caggtcaccg aattgactcc ttccgatcgg cgcgagatcg tgttggccca
      121 tgccgccatg ctgggcagcc acgacttggc cgaacggacg gtgaaaagct ttggcatcgc
      181 gacattatat ccggacatcg ccgcaaatcc gccgtcgcgc tggtcgcctc tgaacgaggc
      241 ggtgaaacaa ttcggcaatc ggttgaatgt cgatgtggga acccaggaca atgtcatcac
      301 cgtgtcattc ctgcatcccg acaaggtgct tgccaccaag gtggtgaaaa agctgatcga
      361 tctgtatatc gccggggaaa gttcgatcta tcagaatccg cagcaatcat ttctcaaaag
      421 cgaagtgaag caggccggcg accgcctggc caccgcccag gccgcgctgg agaaattcaa
      481 ggaccagtgg cgcgtcaccg attacgacca ggaaaccgcc gacctgctga agcagcgcgg
      541 cgacgtcgat atcaatctgc gcacggccca ggccagtctg gcgctggcgc agaaccgggc
      601 ccaggatttg gcgcgccaga tgcgcaaggt tcccgccatt caggccgaac cggcttccgg
      661 cgagaaatac cgcgccctgg acgacgccaa gacccagttg ggcgctttgc gcctgaagcg
      721 cagccagatg ctggcgacct acgcgcccac cagcccggcc atgacgacga tcgatgccgg
      781 cattgccgcg gcgcaggagc aggtccaggc gcgcgagggc gaacttgcgg cgcgctcctc
      841 gtccaccccg aacacggtct atcagagtct gcagaccgat ttcctgcgca atgccgccga
      901 cgcccaaagc aattccggcc cggtcaaggt gctcaccgac cagctcgccg cggtcgacca
      961 gaggctgcac gatctgcagc aaaatcgcgg ctctttcgac aatctcaccc gcgcgcgcca
     1021 gatcgctgaa gacacctaca agtccctttc gcagagatat gaagacgcca gggtcaagag
     1081 caacctaaac gagcagggta tttcacctgc ctccatcatc agccagccga caattcccta
     1141 tcgtccggcg cggccgcaaa agctgatcat tctggcggcc tgcctgttct gcggcatgat
     1201 cttaggggtc ggcgccgccc tgctgaagga agcgttcaac aaccgcttct ccacggccga
     1261 acaggttgcc gtgttcctgg atattccggt catcgccagt ttcgagcgcg accagaggca
     1321 tgtcgaaagc gcccttcttg ggtatgggag tccatcatga atatgcaggc caatctcgcc
     1381 cgggcggcgc atccggaaaa ccagctgtcg cgcaagcatg aatttcgcga gttggacctg
     1441 catgtgccgg aggagttgcc gatcgtcgat ctggtggaat tgtacaccgg gatcgaaaac
     1501 gtcctggaaa ccggccgctg cccgatactg cagctggtgg gcgccggcgc cgattgcgcc
     1561 cccatcgccc tggacctggc atggacggcc gcttcggtga tgggcaagcg cgtgctgttg
     1621 ctgaactgcg cgtcttccgg cagccggctg ccggccatgg ccggtgtcga ggcccgccgc
     1681 cgcgccgagc caggcgaggt ccgcgccgcc gccatggaca gaatgatcaa ggtcgctggc
     1741 caggaaatct acatggtgga tatcgtggga agcccgaaag aggccaatgc cggtcatgcc
     1801 gtcgagatgg tcaattccta tttcgacgcc tattgcgcct ttctcgacat ggtcttcgtg
     1861 gtgccgccgc cggcggaaag cgatcccttg ggcaccatca tggcgcgcca tgttgacggc
     1921 aatatcctgg tggtggaagc caactatacg cggcgcgccg aggcgatgcg gctgcgcgaa
     1981 gtcctggtcc gttcggggcg gccgctgatc ggcgcgatcc tgaacaaccg gcacaatcac
     2041 ttgccgctct ggctgtcgcg ccgcctctaa tctccaaacg ggaggcgctg catgcatgtc
     2101 ctggtcgtaa acaatatcta tccgccgatc atggcgggcg gcgccgaact gatcgtctct
     2161 tacctggcgg aaggcctggc tgcggcgggg cagcgcgtat cggtggt
//
LOCUS       DATMDK010000129         2097 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_3269507,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000129 DATMDK010000000
VERSION     DATMDK010000129.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2097)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2097)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2097
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3269507"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..509
                     /locus_tag="VNN98_02540"
     CDS             <1..509
                     /locus_tag="VNN98_02540"
                     /inference="COORDINATES: protein motif:HMM:NF015684.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="LptF/LptG family permease"
                     /protein_id="HWM60996.1"
                     /translation="NASKENEVPFSTRTLSMTLDALWLRNLGLSPQYLSLSDLSTLAR
                     APIMSRDLSGYKTRLQTVFGETLFTGMMALLAASLSMLYFAYQTRWFALVAVLLAGYL
                     AHFASKAFILMGEFGYMAPVFAGWLAPLLLAVAVARALYVIQKKRGLGLRLQDTPHYA
                     DAVSAASD"
     gene            complement(593..1162)
                     /locus_tag="VNN98_02545"
     CDS             complement(593..1162)
                     /locus_tag="VNN98_02545"
                     /inference="COORDINATES: protein motif:HMM:NF027443.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4833 domain-containing protein"
                     /protein_id="HWM60997.1"
                     /translation="MKLRFLFLALLAALPAQARDFSSSISESAEIVRLRPEFKIPDEP
                     GQLFYVQRSPNSNTVIYTARLDAQGNFDSRAPVDAFWRKFNVDGTRQPLNFLERMAAY
                     GVKVDAHRSGQPITFTIAALPGRKLTLALDAQHHPEARMQIGNHTVKVAYVYLQVVEG
                     GLMPSVPSLDVMGTDIASGKAIHEHLIQK"
     gene            complement(1164..>2097)
                     /locus_tag="VNN98_02550"
     CDS             complement(1164..>2097)
                     /locus_tag="VNN98_02550"
                     /inference="COORDINATES: protein motif:HMM:NF019474.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HWM60998.1"
                     /translation="KVRSMPLNPQAALAIQRAGDLPTNLSPAELRIAYETQRLTLLPQ
                     KPAVAETYQLSIPSDYGPIPARFYRATRDKQPCPLLVYFHGGGFMLGTLALYDTACRR
                     LAVAGDCAVLSVDYRLAPETQFPGAVLDAYAATRWASLSAALLNIDPAKIALGGDSAG
                     GNLAAVVAQMALDSQEFALALQVLIYPMTDQSRDYPSYERNASGYMLTTAALRWFMDN
                     YIPDLDDRKHPMASPMLRPSLQGLPPALVISAEFDPLVDENEAYARRLTEAGVATNYV
                     CFAGMIHPFFTLGGVVEDSAKAEGLIAAALRKLA"
BASE COUNT          392 a          617 c          678 g          410 t
ORIGIN      
        1 ccaatgccag caaggaaaac gaggttccgt tcagcacacg aaccctgtcc atgacactgg
       61 atgcattgtg gctgcgcaat ttgggcttgt cgccgcaata tttgagtctg tccgatctca
      121 gcacattggc gcgggcgccg atcatgtcgc gcgatctcag cggctacaag acgcggctgc
      181 aaacggtatt cggtgagacg ctgttcaccg gcatgatggc gctcttggcc gcaagcctgt
      241 ccatgctcta cttcgcctat cagacgcgtt ggttcgcgct ggtcgcggta ctgctggccg
      301 gctatctcgc ccatttcgcc agcaaggctt tcatcctgat gggcgagttc ggctatatgg
      361 cgccggtttt cgcaggctgg ctggcgccgc tgttgctggc cgtggcagtg gcccgcgcct
      421 tgtacgtgat ccagaaaaag cgcgggctgg gcctgcggct ccaggatacg ccgcattatg
      481 cggatgcggt tagcgctgct tccgattgaa aattgcgtat tgctctcctc accatggccg
      541 gctcggaggc cggccatggt gagggagtga ttttattgag atcgaaatat ctctacttct
      601 gaatgagatg ttcgtggatc gccttgccgc tggcgatgtc ggtgcccata acgtcgaggg
      661 acggcacgct gggcatcaac ccgccttcca ccacctgcag atagacatag gccaccttca
      721 ccgtgtggtt gccgatttgc atccgcgcct cggggtgatg ctgggcgtcc aacgccaagg
      781 tcagcttgcg gccgggcaag gcggcaatgg tgaaggtgat gggctggccg ctcctgtgcg
      841 catccacctt cacgccataa gccgccatcc gctcgaggaa gttcagcggc tgcctggtgc
      901 cgtcgacgtt gaacttgcgc cagaaggcgt ccaccggcgc gcgggaatcg aaattgccct
      961 gcgcatccag cctggcggtg tagatcacgg tgttggaatt gggcgagcgc tggacataga
     1021 aaagctgacc cggctcatcc ggtatcttga attccggacg caggcgcacg atctcggcgc
     1081 tttcgctgat gctgctggaa aaatcgcgcg cctgcgccgg aagcgccgcc aggagagcca
     1141 agaataggaa gcgaagtttc atctcaagcc agcttgcgca gcgccgcggc tatcaagccc
     1201 tccgccttgg cggagtcttc gaccacaccg cccagggtga agaagggatg gatcatgccg
     1261 gcgaagcaga catagttcgt cgccacgccc gcctcggtca gtcgccgggc ataggcttcg
     1321 ttctcgtcca ccaggggatc gaattcggcg ctgatcacca gcgccggcgg caggccttgc
     1381 agacttggac gcagcatagg cgaggccatc ggatgtttgc ggtcgtccaa atcgggaatg
     1441 taattgtcca tgaaccagcg cagcgccgcc gtggtcagca tataaccgct ggcgttgcgt
     1501 tcgtaagagg gataatcgcg gctctggtcg gtcatgggat agatcaacac ctgcagggcc
     1561 agcgcgaatt cttgggaatc cagcgccatc tgcgccacca cagcggccag attgccgccg
     1621 gcgctgtcgc cgcccagcgc aatttttgcg ggatcaatgt tcagcaatgc ggcggacagg
     1681 ctggcccagc gtgtcgcggc ataagcatcc agcaccgcgc cgggaaactg ggtttccggc
     1741 gccaggcgat agtccaccga cagcacggcg caatcgcctg ccactgccag gcggcggcag
     1801 gcggtgtcgt acagcgccag agtgcccagc atgaagccgc cgccatggaa atagaccagc
     1861 agcgggcagg gctgcttgtc cctggtggcg cgatagaagc gcgccgggat ggggccatag
     1921 tcactgggaa tggagagttg ataggtctca gccaccgcgg gtttttgcgg cagcaaggtg
     1981 aggcgctgcg tttcataggc aatgcgaagc tcggcgggcg acaagttggt cggcaagtca
     2041 ccggcacgct gtatcgcaag cgcggcttgg gggttcaggg gcatggacct gacttta
//
LOCUS       DATMDK010000130         2347 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2346345,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000130 DATMDK010000000
VERSION     DATMDK010000130.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2347)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2347)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2347
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2346345"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..204
                     /locus_tag="VNN98_02555"
     CDS             <1..204
                     /locus_tag="VNN98_02555"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="arsenate reductase ArsC"
                     /protein_id="HWM60999.1"
                     /translation="WPGQPMTAHWSMPDPPAVESTPAEIALAFADTYRMLHNRISAFA
                     NLKMSGLDRLSLQKKVADIAKDG"
     gene            201..863
                     /locus_tag="VNN98_02560"
     CDS             201..863
                     /locus_tag="VNN98_02560"
                     /inference="COORDINATES: protein motif:HMM:NF012455.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015267 - channel activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MIP/aquaporin family protein"
                     /protein_id="HWM61000.1"
                     /translation="MTRRPIARRLAAEFLGTAFLLVAVVGSGVMAERLAGGNIAIALL
                     ANALATGAALVVLITILRPVSGAHFNPSVTLYFALRGEIAWRIAALYIVTQFAAAITG
                     VWLAHAMFALPLLEVSTHLRDGPPQWLAEFIATFGLLAAIVGGIRFAPSAIPMLVGLY
                     ITGAYWFAASTSFANPAVTVARSLTDTFAGIAPSSAPGFIAAQLLATIAAWRLLPWLF
                     RP"
     gene            complement(872..1291)
                     /locus_tag="VNN98_02565"
     CDS             complement(872..1291)
                     /locus_tag="VNN98_02565"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61001.1"
                     /translation="MTIGSVGGTAQSYLSQFYTTQQAQAASAVSVDSPLDADAAAETS
                     AAGASGSNSLTGTATSNLDSQTLQALMDLTQQTDPSQQSGQTGQAHRHRGGGAAPPST
                     DTSSASATTASASDPAASTSTDAQDADASLESALLTA"
     gene            1595..>2347
                     /locus_tag="VNN98_02570"
     CDS             1595..>2347
                     /locus_tag="VNN98_02570"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HWM61002.1"
                     /translation="MKRLALTAALLLSATAAAQAQLAAKIGHYVPEKTAHLTAVHDGA
                     GSMNFMPIMGLNTLSTNLIFLHRGVLHAHSGIGQHFHNHCEEMFVIWDGEAEFTINGR
                     TSTLKGPAGAPDRMGSSHAIYNPSDHDVEWMNINVGTSKVYDAFNLGDDRVGAPQDKV
                     PQFVTMHLDKALLKPAPGGGKVQRRRALSPSVFYSPWSYVDHELIAPGGDTGTSKMAD
                     MSEAYYVISGEGSATVNGETVSIRRGDAIPVDL"
BASE COUNT          402 a          802 c          724 g          419 t
ORIGIN      
        1 tggccgggtc agcccatgac cgcacattgg agcatgcccg atcccccagc ggtggaaagc
       61 acgccggccg aaatcgcact ggctttcgcc gacacctatc gcatgctcca caaccgcatc
      121 tcggccttcg ccaatctcaa aatgtccggc ctggaccggc tgtcgctgca aaagaaagtg
      181 gcggacatcg ccaaggacgg atgacccgcc gtccgatcgc ccgtcgcttg gccgccgaat
      241 ttctcggcac cgctttcctg ctggtcgcgg tggtcggctc cggcgtcatg gccgagcggc
      301 tggccggcgg caatatcgcc atcgccctgc tggccaatgc cctggcgacg ggcgccgcgc
      361 tggtggtgct gatcacgatt ttgaggcccg tctcaggcgc gcatttcaat cccagcgtca
      421 cgctttattt cgcattgcgt ggcgagatcg cctggcgcat cgcggcgctc tatatcgtga
      481 cccagttcgc ggcggcgatc accggggtct ggctggccca tgccatgttc gccctgccgc
      541 tgctggaagt ctccacccat ttgcgcgacg gcccgccgca gtggctggcg gagttcatcg
      601 ccaccttcgg cctgctggcc gccattgtcg gcggtatccg ctttgcgccg tccgccatcc
      661 caatgctggt gggtctctac atcaccggcg cctattggtt cgccgcctcc acatccttcg
      721 ccaatcccgc cgtcaccgtg gcgcggtcgc tgaccgacac attcgccggc atcgcaccgt
      781 catccgcacc cggcttcatc gccgcccaac tgctggcaac gattgcggct tggcgcctgc
      841 tgccttggtt gttccggccc tgactggccg atcaggccgt cagtagcgcc gattccaggg
      901 aggcgtcggc atcctgcgca tcggtggacg tgctggcagc gggatcgctg gcgctggcag
      961 tggtggcgga cgccgaagac gtatccgtgg agggcggcgc cgcgccgcca ccacgatgac
     1021 gatgcgcctg gcccgtctgg ccgctctgct gcgacggatc ggtctgctgc gtcagatcca
     1081 tcagggcctg cagggtctgg ctgtccaggt tggatgtggc cgtgcctgtg aggctgttgc
     1141 tgccggacgc gcccgcagcg gatgtttccg cagccgcgtc cgcatccaac ggggaatcga
     1201 cagacacggc ggacgcagcc tgcgcctgct gtgtggtgta aaactggctg agatagcttt
     1261 gcgccgtccc gccgaccgaa ccgatagtca tgctggtctc tctttttcgt cccgcgcgcc
     1321 aattgcgccg gacactgtaa gccgtagcga agatcgtgcc gccgcaatgt ggccggggcc
     1381 tgcgcgcaag agccggcaaa acgcggtgag caaaaactta aaggccggct cccgggtgca
     1441 tgagggaaaa aaactaccgg gcagagacgg gtttccggtc cgtgacacag gcgccagaaa
     1501 gcgccgggcg gctggctgtg ggccccgggg cagcggacat gctatggaaa cttccaggaa
     1561 atggatcgtc agaacaccat ccggggagcc tcacatgaaa cgcctggcct tgactgccgc
     1621 cctgttgctg tccgccaccg ccgccgcgca ggcccagctc gctgccaaga tcggccatta
     1681 tgtgcccgaa aagaccgcgc acctcaccgc cgtgcatgac ggcgccggct cgatgaattt
     1741 catgcccatc atggggctga acacgctctc caccaacctg atcttcctgc atcgcggcgt
     1801 gctgcacgcc catagcggca tcggccagca tttccacaat cactgcgaag agatgttcgt
     1861 gatctgggac ggcgaggccg aattcaccat caacggccgc acctcgacct tgaaaggccc
     1921 agccggcgcg cccgaccgca tgggctccag ccacgccatc tacaacccca gcgaccatga
     1981 cgtggaatgg atgaacatca atgtcggcac ttcaaaagta tacgacgcct tcaatctggg
     2041 cgatgaccgg gtcggtgcgc cccaggacaa ggttccgcag ttcgtcacca tgcatctgga
     2101 caaggcgctg ctgaagccgg ccccgggtgg cggcaaggtg cagcgccgcc gcgccctcag
     2161 ccccagcgta ttctattccc cctggtccta tgtcgaccac gaactgatcg cgccgggtgg
     2221 cgacaccggc accagcaaaa tggccgacat gagcgaggcc tattacgtaa tctcgggtga
     2281 aggcagcgcc acggtgaacg gcgagaccgt ctccatcaga cgcggcgacg ccattccggt
     2341 ggacctg
//
LOCUS       DATMDK010000131         2598 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_302964,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000131 DATMDK010000000
VERSION     DATMDK010000131.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2598)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2598)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2598
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_302964"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..539)
                     /locus_tag="VNN98_02575"
     CDS             complement(<1..539)
                     /locus_tag="VNN98_02575"
                     /EC_number="1.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF015411.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050661 - NADP binding [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HWM61003.1"
                     /translation="MKIGFIGLGRMGGHVAENLLKAGHSVTVWNRSAAPIATLVAKGA
                     IAAQTPADALQGDAVFSMLSNDAVMRELGLAGPLLEKAAKGLIHVNLATISVAFAKEL
                     SAAHSKAGLAYISAPVFGRPEMAESAQLVLVAGGDAAALNTMQPVFEKIGARTVPVDA
                     PEKANLFKIAGNFMIASEL"
     gene            939..1409
                     /locus_tag="VNN98_02580"
     CDS             939..1409
                     /locus_tag="VNN98_02580"
                     /inference="COORDINATES: protein motif:HMM:NF014439.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61004.1"
                     /translation="MTGLVQPFISTVAGSLDSKGRVCIPATYRHLLSAQNTTGVYVCP
                     SFIDPALDCFGQELLDRINARLANQDPFFSSNFDDEATALIARTQALPIDENGRVRIP
                     DLMIEHAGLKDRIVFVGKAQKFQVWDADRYAPIEAEALARVKAKMERARHGEPS"
     gene            1406..2314
                     /gene="rsmH"
                     /locus_tag="VNN98_02585"
     CDS             1406..2314
                     /gene="rsmH"
                     /locus_tag="VNN98_02585"
                     /EC_number="2.1.1.199"
                     /inference="COORDINATES: protein motif:HMM:NF013919.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016434 - rRNA (cytosine)
                     methyltransferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (cytosine(1402)-N(4))-methyltransferase
                     RsmH"
                     /protein_id="HWM61005.1"
                     /translation="MSGHLPVMLAEVLEMLAPRDGAQYVDGTFGGGGYASAILEAADC
                     KVLGIDRDPDAIARGQALVQRFGGRLTLVQGEFSNMDQFTDASDGVVLDLGVSSFQFD
                     QPARGFSFREDGPLDMRMSLSGESAADFVNTTDERTLSLTISRYGEEKNARRIARAII
                     AARPVTGTVQLAKIVSEAQGPAALRHAIHPATRTFQALRIHVNDELGELERGLDAALN
                     LLKPQGRLVVVSFHSLEDRMVKRFLSERSTSAPRASRHAPAGTPSRAASFQLLTTRPR
                     TPSAEELGTNPRARSAKLRAGLKLAA"
     gene            2323..>2598
                     /locus_tag="VNN98_02590"
     CDS             2323..>2598
                     /locus_tag="VNN98_02590"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61006.1"
                     /translation="MVRILNFFCVALMGFSILALYHVSEKTRVAHMQLSQVNSQIAQE
                     RGTIGVLETEWQHVASPERIQQLAQAKLGMADSASVQLSSFDQLPRRG"
BASE COUNT          454 a          851 c          795 g          498 t
ORIGIN      
        1 tccagctcgc tggcgatcat gaaattgcct gcaatcttga acagattggc tttctcgggc
       61 gcgtctaccg gcacggtgcg ggcgccgatt ttttcgaaca ccggctgcat agtgttgagc
      121 gccgcggcat cgccgcctgc caccagcacc agctgcgccg attccgccat ctccggacgg
      181 ccgaacaccg gcgccgaaat ataggcgagc ccggccttgc tgtgcgccgc ggacaattcc
      241 ttggcgaagg cgaccgagat ggtcgccaaa ttcacatgga tcaggccttt cgcggccttt
      301 tccagcagcg gtcccgccag accgagctcg cgcatcaccg catcgttgga aagcatggag
      361 aagacggcgt cgccctgcag tgcgtccgcc ggtgtctgcg cggcgatggc gcccttggcc
      421 accagcgtcg cgatgggcgc ggcgctgcgg ttccacaccg tcacgctatg ccccgccttc
      481 agcaggtttt ccgcgacatg gccgcccatg cggccgaggc caataaatcc gattttcatg
      541 tcctagtccc tgttgcgtcc ggcaggcaga gtccgcatcg cggcgatgat gtccagatgc
      601 cccaaaagct ttggcgaatc atctgcgtgg atgcgccgtc ctggcgcgcc gcggaataca
      661 attctgagtt gtaggttggt cgaaaacgtt aacgccttgt ttaccgccgt caccacagtc
      721 ttaccacgtt cattaatcgt tctctccgac tccacccgta gggggtcgat ggaacccgga
      781 acacaagcca agcccctcaa atgtttgggc tttttgtttg acggggcgct ctgtcccatg
      841 ttatcccatg ctgtcccaaa gggtcgcttg cgacccgcct gagcgttcgg cccctccggc
      901 cggcgaaagg ctctcggggc cagggggtag caggcgccat gaccgggttg gtccagccgt
      961 ttatttcgac ggttgccggg tcgctcgaca gcaaggggcg ggtctgcatt cccgccacct
     1021 atcgccatct gctgtccgcc cagaacacca ccggcgtcta tgtctgcccc agcttcatcg
     1081 atccggcgct ggattgtttc ggccaggaac tgctcgaccg catcaatgcg cggctggcaa
     1141 accaggatcc gtttttctca tccaatttcg acgatgaagc caccgcgctg atcgcgcgca
     1201 cccaggcgct gccgatcgac gagaatggcc gggtgcgcat tcccgattta atgatcgaac
     1261 atgccgggct gaaggacagg atcgttttcg tcggcaaggc gcagaaattc caggtctggg
     1321 atgccgaccg ctatgcgccg atcgaagcgg aagctttggc gcgggtgaag gcgaagatgg
     1381 aacgcgcccg tcatggggag ccgtcatgag cggccatctt cccgtgatgc tggcggaagt
     1441 gctggaaatg ctggcgccgc gcgacggcgc gcagtatgtc gacggcacct tcggcggcgg
     1501 cggttatgcc agcgccattc tggaagccgc cgattgcaag gtgctgggga tcgaccgcga
     1561 tcccgatgcc attgcccgcg gccaggcgct ggtgcagcgc ttcggcggcc gactgacgtt
     1621 ggtgcagggc gagttctcca acatggatca gttcaccgac gccagcgacg gcgtcgtact
     1681 ggatctgggc gtgtcgtcgt ttcagttcga tcagccggcg cgcggttttt ccttccgtga
     1741 ggacggcccc ttggacatgc gcatgagcct gtcgggcgaa agcgcggcgg atttcgtcaa
     1801 caccacggac gaacgtactt tgagcctaac catctcgcgc tatggcgagg agaagaatgc
     1861 ccgacgcatc gcccgcgcca tcatcgcggc gcgccccgtc accggcacgg tgcaactggc
     1921 caagatcgtg tcggaggccc aaggcccggc cgccttgcgc catgccatcc atcccgccac
     1981 ccgcaccttc caggcgctgc gcatccatgt gaatgatgag ttgggcgagt tggaacgcgg
     2041 cttggacgca gcgctgaacc tcttgaagcc acagggccgc ctggtggtgg tgtcgttcca
     2101 cagcctggaa gaccgtatgg tcaagcgctt cctcagcgaa cgctcgacct cggcgccgcg
     2161 cgcctcgcgc catgcgcctg cgggtacgcc gtcccgcgcc gcgtcattcc agcttctcac
     2221 cacccgcccg cgcaccccgt cggcggaaga actcggcacc aacccacgag cccggtccgc
     2281 caagctgcgc gccggcctca aactggcggc ataggagata gcatggttcg catcttgaat
     2341 ttcttctgcg tggcattgat gggcttttcg atcctggcgc tttatcatgt gtcggaaaag
     2401 acccgcgtag cccatatgca gctgagccag gtcaacagcc agatcgccca ggaacgcggc
     2461 accatcggcg tcctggaaac cgaatggcag catgtcgcct cgcctgagcg catccagcaa
     2521 ttggcgcaag ccaagttggg catggccgac agcgcctcgg tgcagctcag ttctttcgat
     2581 caactgccgc gccgcggc
//
LOCUS       DATMDK010000132         4225 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2114802,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000132 DATMDK010000000
VERSION     DATMDK010000132.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 4225)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4225)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4225
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2114802"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..481)
                     /locus_tag="VNN98_02595"
     CDS             complement(<1..481)
                     /locus_tag="VNN98_02595"
                     /inference="COORDINATES: protein motif:HMM:TIGR02937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HWM61007.1"
                     /translation="MSSFSDERAIWLGRQVLPHEPALRAWLSRRRLDGLEIDDVIQET
                     YTRLISAESVSHVLDPKSYAFQTAGSVVIDHLRRMKVVSIASVPDLDYLEVVSDDPSP
                     ERQAIDRDELHRLAQAIAGLPPKVREVFTLRRVYGLSQREVAVKMGLSESTVEKHMSR
                     "
     gene            complement(629..1828)
                     /locus_tag="VNN98_02600"
     CDS             complement(629..1828)
                     /locus_tag="VNN98_02600"
                     /inference="COORDINATES: protein motif:HMM:NF022441.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2807 domain-containing protein"
                     /protein_id="HWM61008.1"
                     /translation="MSKMLAIVSVVSLLLCGALLGLAHMIGGDDVFHDQRSLERIKPL
                     IDLATHKEWHWDGGDSLALDTPVNIRYQPQGAPHVSVTGPEELMQHVRVGGGRIGSDM
                     ASGTPDGKRLEAVVSGVAIRKFVVNGGESLQLGHIDQQGLDLFINGNGAVSGDGRVSA
                     LKLVISGPGKADLGGLSVGDAKVSILGSGTATLSPHGDVQLFIAGSGKLGLLTRPAHL
                     RQTILGSGDVSQIAAGADNSSSSSSSSSSSSSSTSSSAAAAAKASQEHIAQDVPQPPA
                     PPAVTMMDGGKKDVVIMRGDKDIDLGHVEQKSLTVTIANSGSTTAGGKVDTLNVTVLG
                     SGHANLGKVAARKVVVAIMGSGKATVAPGEELKVTIMGSGDVHLLTKPARIERNILGS
                     GQIFEAK"
     gene            complement(1833..2393)
                     /locus_tag="VNN98_02605"
     CDS             complement(1833..2393)
                     /locus_tag="VNN98_02605"
                     /inference="COORDINATES: protein motif:HMM:NF019618.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1700 domain-containing protein"
                     /protein_id="HWM61009.1"
                     /translation="MTRALFLARLRQGLKGLSTDEIDDIVMDYEAHFNDAIAAGRSEA
                     DVASSLGDPLQLGSELRAESKLRRWETRRSPRNFLRAGAALVGLQAFNIVILLPVIIA
                     LIFCAGLIAYVVYIVAGTGLHLLAGLLSGNGNVLIPALVGLGMLCGAVGIGGLIALLL
                     DAGLRLLARYVRLNYRLLKPGDAEEE"
     gene            complement(2390..2716)
                     /locus_tag="VNN98_02610"
     CDS             complement(2390..2716)
                     /locus_tag="VNN98_02610"
                     /inference="COORDINATES: protein motif:HMM:NF015513.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PadR family transcriptional regulator"
                     /protein_id="HWM61010.1"
                     /translation="MAESIQTQLRKGILELCVLTLLSRADGYGYEIATRLMQEVGMGE
                     GTIYPLMRRMQDDGLVSTYLVEGPGGPPRKYYRMTEAGRTTLKAQRDEWKNFLASVEK
                     MLGDDA"
     gene            complement(2813..3613)
                     /locus_tag="VNN98_02615"
     CDS             complement(2813..3613)
                     /locus_tag="VNN98_02615"
                     /inference="COORDINATES: protein motif:HMM:NF022441.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2807 domain-containing protein"
                     /protein_id="HWM61011.1"
                     /translation="MRKAHFAKTGFVLFLVSLLWAPLAQARSWDGFTPREPSLKQSGH
                     WEWAWDGSNGLGIEVPATVHYVPTGPARIVITGPDDMLEQLAVGQGQIKARCDDCHFG
                     RHMLDITVSGVTLRNVALSGPGEIALGRLDQDRLNLVISGSGSVSTEGRIDRMELVVS
                     GSGNAKLGEMAVQQADIHVSGSGWVGAEGRIDRVELAISGSGKAQLGGVAVRQANIHL
                     SGSGNAMMTPREMASVSIAGSGVVRMAAKPPQLTQSITGSGGVRIGGN"
     gene            3727..>4225
                     /locus_tag="VNN98_02620"
     CDS             3727..>4225
                     /locus_tag="VNN98_02620"
                     /inference="COORDINATES: protein motif:HMM:NF019335.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Plug domain-containing protein"
                     /protein_id="HWM61012.1"
                     /translation="MKKAAILWVFLCTVPAWAGPDQGISTYPASFFADSRPATAYDMV
                     SRLPGFSLDTGTSARGFAGTAGNVLVDGARPTAKTDDLSSILTRIPAASVDHIEVIHG
                     GAPGIDMQGQTVVANVVRRKGASAAQTIVTGRTTYTGAGQWSPALGVEYHGQSGATSY
                     ELSLSR"
BASE COUNT          803 a         1400 c         1243 g          779 t
ORIGIN      
        1 cccggctcat atgcttttcc acggtactct cggaaaggcc cattttgacg gcgacttccc
       61 gctgggaaag gccgtaaacc cgccgcaagg taaagacctc ccgcaccttg gggggcaggc
      121 ccgcaatggc ctgggccagg cgatggagct cgtcgcgatc gattgcctgg cgctcgggcg
      181 acgggtcgtc cgacaccacc tccagataat ccaggtctgg cacagaggcg atcgatacca
      241 ccttcatccg gcgaagatgg tcaataacca ccgaacccgc ggtctgaaag gcatagctct
      301 tggggtccag cacatgcgac acgctctccg cgctgatcag gcgggtatag gtttcctgga
      361 tgacatcgtc gatttccagg ccgtcaagac ggcgccggct gagccatgcg cgaagcgcgg
      421 gctcatgcgg cagcacctgc cgtcccaacc agatcgcccg ctcgtccgaa aacgatgaca
      481 tggattgatc taaagaggat tgggaccatt tggcaagttg acctggttaa cccaaaggct
      541 gggcggtggc gctgagggtg attgcggcca caccagacgc ggccgccaaa ttagcgcaaa
      601 taccccagtt acttggcggc cggcggcgtt atttggcttc gaatatctgg cccgatccca
      661 ggatgttccg ctcgatccgc gcgggctttg tcagcagatg cacgtctccc gaacccatga
      721 tggtgacctt caattcctca ccgggcgcga cggtcgcctt gccgcttccc ataatcgcca
      781 ccaccacctt gcgggcggca actttcccca gattggcatg acctgatccc aggacggtga
      841 cgttcagcgt atccaccttg cccccggcgg tggtcgagcc ggaattggct atggtgacag
      901 tcagactctt ctgttccaca tggcccagat cgatgtcctt gtcgccgcgc attattacga
      961 cgtccttctt cccaccatcc atcatcgtga ccgccggggg cgccggcggc tgcggtacat
     1021 cttgtgcaat gtgttcctgc gaagctttag ccgcggccgc cgctgatgat gatgttgatg
     1081 acgatgatga tgacgacgat gacgatgacg acgatgaatt gtccgccccc gccgcgatct
     1141 ggctgacatc accgctgccc agaatggtct ggcgcagatg cgccggccgg gtgagaagcc
     1201 caagcttgcc gctgcccgcg atgaaaagct ggacatcacc atgcggcgac aaggtcgccg
     1261 taccgctgcc caggatcgag actttggcgt cgcccaccga aaggccgcct aggtccgcct
     1321 tgcccgggcc ggaaatgaca agcttcaggg cggaaactct gccgtcgccg cttaccgcgc
     1381 cgttaccgtt gatgaacagg tccaggccct gctggtcgat atggccaagc tgaaggcttt
     1441 cgccgccatt gaccacgaac ttgcggatag ccacgccgct gaccactgct tccagccgct
     1501 tgccgtccgg tgtcccgctg gccatatccg aaccgatccg cccgcctccg acgcgcacat
     1561 gctgcatcag ctcctccggg cccgtcaccg agacatgcgg cgcgccttgc ggctgatagc
     1621 ggatattgac cggggtatcg agcgccaagc tatcgccgcc gtcccagtgc cattccttgt
     1681 gcgtggcaag atcaatcagg ggcttgatgc gttccagcga acgctggtca tgaaacacgt
     1741 catcgccgcc gatcatatgg gccagaccga gcaaggcgcc gcaaagtaac aggctgacga
     1801 cggagactat cgcgagcatt ttggacatga cgttattcct cctccgcgtc gccgggtttc
     1861 agcaagcggt agttcaggcg cacatagcga gccagaagcc gcagcccggc atccagcagc
     1921 aacgcgatca agccgccgat gccgaccgcg ccgcacagca tgcccagccc gaccagtgcc
     1981 gggatcagaa cattgccatt gccggacagc aggccggcca aaagatgaag gccggtgcca
     2041 gccacgatat acacgacata ggcgatgagg ccggcgcaga atatcaaggc gataatcacc
     2101 ggcagcagga tcacgatatt gaaggcctgc agccccacca gcgccgcgcc cgcgcgcagg
     2161 aagttgcgcg ggctgcgccg ggtttcccag cggcgcagct tgctttccgc ccgaagctcg
     2221 ctgcccagtt gcagcgggtc gcccagggac gatgcgacgt cggcctcgct gcgcccggcc
     2281 gcgatggcgt cgttgaaatg ggcctcatag tccatcacga tgtcgtcgat ctcgtccgtt
     2341 gagagcccct tgaggccttg ccgcaagcga gccagaaaaa gcgcgcgggt catgcatcgt
     2401 ctcccagcat cttctccacc gaggcgagaa agtttttcca ttcgtcccgc tgggccttga
     2461 gcgtggtgcg gccggcctcc gtcatgcggt aatatttgcg gggcgggccg cccggacctt
     2521 ccaccagata ggtgctgacc aagccatcgt cctgcattcg ccgcatcagg ggatagatcg
     2581 tgccctcgcc catgcccact tcctgcatca ggcgggtggc gatctcgtag ccatagccat
     2641 cggcgcgcga cagaagcgta agcacacata attccaggat gccctttctg agctgggtct
     2701 gaatgctctc cgccaaaata acgtcttccg ctgtgggtcg aatgccttcg cgaaagctat
     2761 cgtccggcag gtccggccgc aatgcgctgc gctccttgag cggttcgcgg gttcagttgc
     2821 cgccgatgcg gacgccaccc gatcccgtga tggactgggt cagttgcggc ggcttcgccg
     2881 ccatgcgcac cacgcccgaa ccggcgatcg agacgctcgc catttcccgc ggcgtcatca
     2941 tggcgttgcc actgccagag aggtgaatgt tggcctgccg taccgccacc ccgcccagct
     3001 gggccttgcc cgatccggag atcgccagct ctacgcggtc gatacggcct tccgcgccta
     3061 cccaaccgct gccggagacg tggatgtcgg cttgctgcac cgccatctcg cccaacttgg
     3121 cattgcccga gccggagacc accagttcca tccggtcgat tcgaccctcg gtgctgaccg
     3181 agccgctgcc cgagatgaca agattcaacc gatcctgatc gagccggccc aacgcaatct
     3241 cacccgggcc ggagagggcc acattgcgca acgtcacgcc actgacggtg atgtccagca
     3301 tgtggcggcc gaagtgacaa tcatcgcacc gcgctttgat ctgaccctgg ccgacggcca
     3361 gctgctccag catgtcatcg ggaccggtga tgacaatgcg ggccggaccc gtggggacat
     3421 aatgcaccgt tgcggggact tcgatcccca gtccgttgct gccgtcccag gcccattccc
     3481 agtgaccgga ctgtttcaag gacggctcac gcggcgtgaa accgtcccag ctccgggctt
     3541 gcgccaacgg cgcccacaac agggacacaa gaaaaaggac aaatccggtc tttgcgaagt
     3601 gagctttgcg catgggggtc tcctggattt caaaccgcgt cgccatcggt atagacatta
     3661 gtaccatgct atgcaaggta taatgctgta cacgctatac ggttatgcaa ggaacggagc
     3721 gaatacatga aaaaagcagc gattctctgg gtttttcttt gcaccgttcc ggcctgggcc
     3781 ggtcccgatc aggggatttc gacctacccc gccagctttt tcgccgattc ccggcccgcc
     3841 accgcctatg acatggtctc gcgcctgccc ggcttcagcc tggatacggg cacctcggcg
     3901 cgcggctttg ccggcaccgc cggcaatgtg ctggtcgacg gcgcccggcc gacggccaag
     3961 accgatgatc tttccagcat cctgacccgc attcccgccg ccagcgtcga tcacatcgaa
     4021 gtgattcacg gcggcgcacc cggcatcgac atgcagggcc agacggtggt ggccaatgtt
     4081 gtgcgccgca aaggcgcttc cgccgcccag actattgtca ccggccgcac cacctatacc
     4141 ggtgcgggac aatggtcacc tgcgctgggc gtcgaatatc acggacaaag cggggcgaca
     4201 tcatacgagt tgtccctgtc gcgca
//
LOCUS       DATMDK010000133         2549 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1439415,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000133 DATMDK010000000
VERSION     DATMDK010000133.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2549)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2549)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2549
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1439415"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..725)
                     /locus_tag="VNN98_02625"
     CDS             complement(<1..725)
                     /locus_tag="VNN98_02625"
                     /inference="COORDINATES: protein motif:HMM:NF015527.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008146 - sulfotransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfotransferase family 2 domain-containing
                     protein"
                     /protein_id="HWM61013.1"
                     /translation="MFLDFNRRRARFLDPKRLNHAFFGAWYEEDIYDKFCAAFPAAMG
                     AFRWRIPPVMRARNLIFVHVPRVAGTSIVRALYGEGCIHHHSMRYYRAVHPAFAQSAG
                     SFALLRDPFDRFASAYAFVRAGGTSCSRLSDVFVRQTACVATMDDYLGFLEGRSALEL
                     DFVMRPQSWFVCDPVTGAPLVKTLFLLGEDTAALAAYLAPQNIGPLPWLNRAPRLALL
                     LNARQRRRIERIYADDFALIDSLR"
     gene            982..1653
                     /locus_tag="VNN98_02630"
     CDS             982..1653
                     /locus_tag="VNN98_02630"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF024917.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HWM61014.1"
                     /translation="MNHVLDRPVWNALTTRQASFARGGGHALRFDPQVGLFAATRDGS
                     AEGVLPLIPSGGGVALVEIGEMAPPPGALVMQRAVLEQMIAPAITPGKAKFEIVPLGD
                     GDAAEMLALATLTEPGPFFRRTHQLGDFIGVKQNGKLVAMAGERMKPQGFTEVSGVCT
                     HPEHRGRGYAGGLMRIVAQRILARGETPFLHVYAHNAGAIALYEALGFHRRTAMHMTV
                     LARSS"
     gene            complement(1646..2248)
                     /locus_tag="VNN98_02635"
     CDS             complement(1646..2248)
                     /locus_tag="VNN98_02635"
                     /EC_number="2.5.1.18"
                     /inference="COORDINATES: protein motif:HMM:NF024809.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043295 - glutathione binding [Evidence
                     IEA];
                     GO_process: GO:0006749 - glutathione metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase"
                     /protein_id="HWM61015.1"
                     /translation="MQLIGMLDSPYVRRVAVSLKVLGLPFDLDQVSVFRQFDKFAALN
                     PVVKAPTLITDSGVVLMESSLILEHIAHLAPRSLMPAGRAGHETALRQIGLALAACEK
                     SVSIVYERNLRPVEKQHQPWLDRVRGQLLSAYGALEQEASPDWFSGEELMQPQITAAV
                     AWRFTQHVVAELVPAAEFPKLAVLSARAEQLPAFRETDFS"
     gene            complement(2336..>2549)
                     /locus_tag="VNN98_02640"
     CDS             complement(2336..>2549)
                     /locus_tag="VNN98_02640"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HWM61016.1"
                     /translation="LLAEAERIAKDAGAKRMRLTVIWVREALIAWYQRRGYIPTGETA
                     PFPYDDDRWGRPTRDDLYFVFFDKIL"
BASE COUNT          495 a          799 c          841 g          414 t
ORIGIN      
        1 cgcagcgaat caatcagcgc aaaatcatcc gcgtagatcc gctcgatgcg gcggcgctgc
       61 cttgcgttca gcagcagggc caggcgcggg gcgcggttga gccagggcag cgggccgatg
      121 ttctgggggg cgagataggc cgcaagtgct gcagtatcct cgccaaggag gaacagggtc
      181 ttcaccagcg gcgcgcccgt caccggatcg cagacgaacc agctttgcgg acgcatgaca
      241 aagtccagct ccagggcgct gcgtccttcc agaaagccaa gatagtcgtc catcgtggcc
      301 acacaagccg tctgccgcac gaaaacatcg ctgaggcggc tgcaggaggt gccgccggcc
      361 cgcacaaagg cataggcgct ggcgaagcgg tcaaacggat cgcgcagcag ggcgaaggac
      421 ccggcgcttt gcgcgaacgc cggatggacg gcgcgataat agcgcatgct gtgatggtgg
      481 atgcagccct cgccatacaa agcgcggacg atggaggtgc cggcgacgcg cggcacatgc
      541 acgaagatca gattgcgggc gcgcatgacg ggcggaatgc gccaccggaa ggcgcccatc
      601 gcggcgggaa aggcggcgca gaatttgtcg taaatatcct cttcgtacca ggcgccgaaa
      661 aaggcgtggt tgaggcgttt gggatcgagg aaccgggctc gccgccggtt gaaatccagg
      721 aacattatag ccgtgctgaa aataggctct agggctaacc aatttgcgcc gcaccttcct
      781 ggcggcgcct tcgcggaagt gtcgcaataa ttcgcgcagc cccggcgtga ccaagacgtg
      841 ataagaatgg cggcacattt aatgtggcgc gcgaaaacta tgttgacgtg gactacgcgg
      901 attcgattta aacatttgtt gtaagcggcc ggcttcgcgc tctttgccgc ctgacgtgcc
      961 gaagcccgct agggagccgg aatgaaccat gtgctggacc gcccggtgtg gaacgccctg
     1021 accacgcggc aggcgtcatt cgcccgcggc ggcgggcatg cgctgcgttt cgatccccaa
     1081 gtcggcctgt tcgccgccac acgcgacggc agcgcggaag gagtgctgcc gctgatcccc
     1141 tccggcggcg gcgtggcgct ggtggagatc ggcgagatgg cgccgccgcc gggcgccctg
     1201 gtgatgcagc gtgccgtgct ggagcagatg atcgccccgg ccatcacgcc ggggaaggca
     1261 aagttcgaaa ttgtgccgct gggcgacggc gatgccgcag agatgctggc cctggccacc
     1321 ctgaccgagc cggggccgtt tttccgccgc acccaccagc tgggcgattt catcggcgtg
     1381 aagcaaaacg gcaagctggt ggcgatggcg ggcgagcgga tgaagccgca aggctttacc
     1441 gaagtcagcg gcgtctgcac ccatcccgaa catcgcggac gtggctatgc cggcgggctg
     1501 atgcggatcg tggcgcagcg cattctggcg cggggcgaaa cgcccttcct gcatgtctac
     1561 gcccacaatg cgggggccat cgcgctttac gaggcgctgg gatttcaccg ccgcaccgcg
     1621 atgcacatga cggtgctggc gcgctctagc tgaaatccgt ttcgcggaaa gcgggcagct
     1681 gttccgcccg cgccgacagc accgccaatt tcggaaactc cgccgccggc accagttccg
     1741 ccaccacatg ttgggtaaag cgccaggcca ccgcggcagt gatctgcggc tgcatcagct
     1801 cttcgccgct gaaccagtcg ggcgaagcct cctgttccag cgcgccatag gcgctgagca
     1861 actggccgcg cacccggtcc agccaaggct gatgctgctt ttctaccgga cgcaaattgc
     1921 gctcatagac gatggagaca cttttctcgc aggccgccag cgccagtccg atctggcgca
     1981 aggccgtttc gtggccggcg cggccggcgg gcattaggct gcgcggcgca agatgggcga
     2041 tatgctccag gatcagactg gactccatca gcaccacgcc gctgtcagtg atcagggtgg
     2101 gcgccttcac caccggattg agggcggcga atttgtcgaa ctggcggaac accgacacct
     2161 ggtccaggtc gaacggcagg cccaacactt tcaacgacac tgccacgcgc cgcacataag
     2221 gcgaatccaa catcccgatc agttgcatgg cgcgttcccc aaaaatcgcg aaaacatgtt
     2281 caggcccggc gcggattttg tccatgcgcg cgaacgcaac ccgcctatgc gtctttcaaa
     2341 gaattttgtc gaagaagacg aaatacagat cgtcgcgggt cggccggccc cagcggtcat
     2401 cgtcataggg aaagggtgcg gtctcgccgg tcgggatata gccgcgccgc tggtaccagg
     2461 cgatcagcgc ctcgcgcacc cagatcaccg tcaagcgcat gcgcttggcg ccggcgtcct
     2521 tggcgatacg ctcggcctcc gccagtagg
//
LOCUS       DATMDK010000134         3418 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2576956,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000134 DATMDK010000000
VERSION     DATMDK010000134.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3418)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3418)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3418
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2576956"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..331)
                     /locus_tag="VNN98_02645"
     CDS             complement(<1..331)
                     /locus_tag="VNN98_02645"
                     /inference="COORDINATES: protein motif:HMM:NF014757.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0070403 - NAD+ binding [Evidence IEA];
                     GO_process: GO:0006631 - fatty acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-CoA dehydrogenase NAD-binding
                     domain-containing protein"
                     /protein_id="HWM61017.1"
                     /translation="MAVEKIGVVGAGQMGTGIAHVLALAGYDIVLDDINKDALSKAIE
                     RVAKNMQRQAAKGAINEDQIAPALARIRVTQTLDDLRDRDLVIEAATEDETIKKKIFQ
                     DLCTRISD"
     gene            complement(343..1287)
                     /locus_tag="VNN98_02650"
     CDS             complement(343..1287)
                     /locus_tag="VNN98_02650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005263505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="electron transfer flavoprotein subunit
                     alpha/FixB family protein"
                     /protein_id="HWM61018.1"
                     /translation="MASLVIAEHDNTSLKDTTHKTVTAAAAISAPVHVLVAGENCAAV
                     ADAAAKIAGVEKVLLADSAAYARMLAEPMEALILSLADKYDAILAPATTTGKNILPRV
                     AAKLDTPQISEILKVISPDTFERPIYAGNAIETLQAPAGKKIITVRTTAFAAAAEGGS
                     ATVETIAAAADPGTSKFAGEALSKSERPDLTSAKVVISGGRGLGSAENFKLLDAIADK
                     LHAAVGASRAAVDAGYVPNDYQVGQTGKAVAPELYIAVGISGAIQHLAGMKDSRVIVA
                     INKDAEAPIFQVADYGLVGDLFKILPELDEELTKRGYK"
     gene            complement(1287..2033)
                     /locus_tag="VNN98_02655"
     CDS             complement(1287..2033)
                     /locus_tag="VNN98_02655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010114648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="electron transfer flavoprotein subunit beta/FixA
                     family protein"
                     /protein_id="HWM61019.1"
                     /translation="MKVLVPVKRVIDYNVKVRVKADQSGVDLANVKMSMNPFDEIAVE
                     EAVRLKEQGKATEVVVVSIGPQQAAETIRTALAMGADRGILVKTDQTVEPLAVAKILK
                     AIVDTEQPGFVITGKQAIDDDANQVGQMLAALLGWPQGTFAHSLELGEARAKITREID
                     GGLQTVEVKLPAVMTTDLRLNEPRYASLPNIMKAKKKPIDEKSPAELGVDITPRFKVL
                     KVSEPPKRGGGIKVASVGELLDKLKADGVI"
     gene            complement(2323..2694)
                     /locus_tag="VNN98_02660"
     CDS             complement(2323..2694)
                     /locus_tag="VNN98_02660"
                     /inference="COORDINATES: protein motif:HMM:NF012264.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HWM61020.1"
                     /translation="MLRKSFIALALLAGSVLAANAAGDAKAGAQVFKRCAVCHTNDKG
                     GGDGLGPNLFGIVGRKAASRPGFAYSAPLQKSGIVWNEALLTKWAAGPARVVPGTKMM
                     FAGITSKKQQADIAAYLATLK"
     gene            2989..>3418
                     /locus_tag="VNN98_02665"
     CDS             2989..>3418
                     /locus_tag="VNN98_02665"
                     /inference="COORDINATES: protein motif:HMM:NF015437.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autoinducer binding domain-containing protein"
                     /protein_id="HWM61021.1"
                     /translation="MSEGRDLPQEGPGPRIVQDFSRAARGAAGMAQLHALLCEAVRAL
                     GFQHFLLQGAAGQVWLADLPPAWTAAPSGDAVLSAASQSYAPFLWSDIPRLVSLTSGQ
                     RDFLDAVHAAGTGAAVTTPVHRARGASEAGSYSVFAGCCSF"
BASE COUNT          528 a         1102 c         1065 g          723 t
ORIGIN      
        1 tatcggaaat gcgcgtgcac agatcctgga agattttctt cttgatggtc tcatcttccg
       61 tcgccgcttc gatcaccagg tcgcggtcgc gcaaatcgtc cagggtctgg gtgacgcgga
      121 tgcgcgccag ggccggggcg atctggtctt cgttgatggc gcctttggcg gcctggcgct
      181 gcatgttctt ggcgacccgt tcgatcgcct tggacagcgc atccttgttg atatcgtcca
      241 gcacgatatc gtagccggcc agcgccagca catgcgcgat accggtgccc atctggcccg
      301 caccaactac accgattttt tccactgcca tttgagttgc ctttacttgt aaccgcgctt
      361 ggtgagttct tcgtccagct cggggagaat tttgaacaga tcgccgacca ggccgtaatc
      421 ggccacctgg aagatgggcg cttccgcgtc cttgttgatc gccacgatta cccgcgaatc
      481 cttcatgccg gccagatgct ggatggcgcc ggaaattccc accgcgatgt aaagttcggg
      541 cgccacggcc ttgccggtct ggccgacctg gtaatcattg ggcacatagc ccgcatccac
      601 cgcggcgcgg ctggccccga cggcggcatg cagcttgtcg gcgatggcat ccagcagctt
      661 gaaattctcc gccgatccca gcccgcgccc gccggaaatg acaaccttgg ccgaagtcaa
      721 atcaggccgc tccgacttgg acaaggcctc gcccgcaaat ttggaagtgc cggggtcggc
      781 ggcggcggca atggtttcca ccgtggcgct gccgccttcc gctgccgccg cgaacgcggt
      841 ggtgcgcacg gtgatgatct tcttgcccgc cggcgcctgc agggtctcga tggcattgcc
      901 ggcatagatg ggccgctcaa aagtgtcagg cgagatcact ttcaggattt cggaaatctg
      961 cggcgtatcc agtttggcgg ccacgcgcgg caggatgttc ttgccggtgg tggtggcggg
     1021 cgccaggatg gcgtcatact tgtccgccag cgacaggatc agcgcctcca tcggctcggc
     1081 cagcatccgc gcataggcgg cgctgtcggc cagcaggact ttttccacgc ccgcgatctt
     1141 ggcggcggcg tcggccaccg cggcgcagtt ctcgcccgcc accagcacat gcaccggcgc
     1201 ggagatcgca gccgccgcgg tcaccgtctt gtgggtggtg tctttcagcg acgtattatc
     1261 gtgttcggca atgaccaggg acgccatcag atgaccccgt cggctttgag cttgtcgagc
     1321 agttcgccca cactcgccac cttgatgccg ccgccgcgtt tgggcggctc cgatactttc
     1381 agcaccttga agcgcggcgt gatgtccacg cccagttcgg cgggcgactt ttcatcaatc
     1441 ggctttttct tggccttcat gatgttgggc agcgaggcat agcgcggctc gttgagacgc
     1501 agatcggtgg tcatcaccgc cggcagtttg acctcaaccg tctgcaagcc gccgtcaatt
     1561 tcgcgggtga tctttgcgcg ggcctcgccc agttcgaggc tgtgcgcgaa agttccctgc
     1621 ggccagccca gcaaggcggc cagcatctgg cccacctggt tggcgtcgtc gtcgatcgcc
     1681 tgcttgccgg tgatgacaaa gcccggctgt tctgtgtcca cgatggcttt gagaattttg
     1741 gcgacggcca gtggctcgac cgtctgatcg gtcttgacca gaatgccccg gtcggcgccc
     1801 atcgccaggg cggtgcggat ggtttcggcg gcttgttgcg gcccgatgga aaccaccacc
     1861 acttcggtgg ccttgccctg ttccttcagg cgcaccgctt cttccacggc gatttcatca
     1921 aagggattca tggacatttt gacattggcc aagtccacgc cgctctggtc cgccttgacg
     1981 cggactttca cgttgtagtc gatcacccgc ttgacgggta ccaagacctt catggtgttt
     2041 ctttggtccc caatggaggg cactcgcggc gaccttgcgg gcgctaaccg tgccatcctg
     2101 ctcttgtgcg gtgcaaaaac tatggccgca gggcgaggcc tgtcaacgaa accggacgca
     2161 cggcaggccc attatcgctg cattgcagca atagtggtta acccaccgcc ccaaatgcgt
     2221 caccctgccg cactctgccc ctccggcctt cgctggcccg agggccagct acggccacct
     2281 ccccatgcaa gcgcgcttac gcgcgcgctg gggagggggc gcttacttca gcgtcgccag
     2341 gtaggcggct atgtcggcct gctgcttttt gctggtgatg ccggcaaaca tcattttggt
     2401 gccgggcacc accctggcgg gccctgcggc ccatttggtc agcaaggctt cgttccagac
     2461 aatgccggac ttctgcaacg gcgccgaata ggcgaagccc ggacggctgg ccgctttgcg
     2521 gccgacaatg ccgaacagat tggggcccag gccatcgccg ccgcccttgt cattggtgtg
     2581 gcagacggca cagcgcttga acacttgggc gccggccttg gcatcgcctg cggcattggc
     2641 cgcgaggacg gagccggcca gcagcgccag cgcgatgaaa ctcttgcgaa gcattgaaaa
     2701 gcccttttct taggggcggt ccggcttcgc ctaacgccct tcgtttaatg gggcggtccg
     2761 gcttcgccta acgccctttg tttaataggg cggtccggct tcgcctaacg ccctttgttt
     2821 aatggggcgg tccggcttcg cctaacgccc ttcggttccc ctgacgagtc ctccaataac
     2881 tgatctagaa actgaaaaca gcggaattat ggtctcaccc cccgtcggcc agcagacctg
     2941 cgctgttttt cgcatggtac ttttgcggtc cctgaatgag gatcgcgtat gagcgagggg
     3001 cgtgatttgc cgcaagaggg gccgggcccg cgcatcgtgc aggatttttc ccgcgccgcg
     3061 cggggcgcag cgggcatggc ccagctgcac gccctgctgt gcgaagccgt ccgggcgctg
     3121 ggttttcaac attttttgct gcaaggcgcg gcggggcagg tgtggctggc cgatcttccg
     3181 cccgcctgga cggccgcgcc gtccggcgac gcggtgctgt cggcggcgtc gcaatcctat
     3241 gcgccctttc tatggtcgga tattccgcgc ctggtatcgc taaccagcgg ccagcgcgat
     3301 tttctcgacg ccgtccatgc cgcgggcacc ggcgcggccg tgacgacacc ggttcaccgg
     3361 gcgcgcggcg cgagcgaggc gggcagttac agcgtctttg ccggctgctg ttctttcc
//
LOCUS       DATMDK010000135         2939 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2577368,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000135 DATMDK010000000
VERSION     DATMDK010000135.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2939)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2939)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2939
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2577368"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1994)
                     /locus_tag="VNN98_02670"
     CDS             complement(<1..1994)
                     /locus_tag="VNN98_02670"
                     /inference="COORDINATES: protein motif:HMM:NF014728.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase KdpD"
                     /protein_id="HWM61022.1"
                     /translation="MTDTDNRPSPDALLKEAGQAGRGRLKIFLGAAPGVGKTYEMLVQ
                     ARRRKLDGVDAVIGVVETHGRVETDLLTKGIESVPKKRTPYKGRVLAEMDLDAILQRR
                     PRLVLVDELAHDNAPGSRHPKRYMDVEELLAAGIDVYTTLNVQHVESLNDVVAKITKV
                     RVRETVPDSILDRADDIELVDLTPEDLLQRLKDGKVYLPEAATRAAQNYFVAGNLAAL
                     RELALRRTAQRVDAQMVDYMRAHAISGPWEASERLLVAVNARPGAAQAIRYGRRLADR
                     LRASWTAIHVETGAASEAERDLVAQALRLAERMGGVAATVPAASEAEGVIQFARANNV
                     THIVTMASRGSRWRDFLRPSLAQEIVRRAGEMGVHVVPDRGDKQDIAKLAPPERPRLE
                     PRAFAGSFAISLMGLGVSLLLRQTLAVSNVALVLLVAVLASAVTFGLWPSLFACLLLA
                     LAYNFFFLPPLYTFTIADPENVVTLLVFTLVAAIASNLTARVRMQAIVARQRAATTED
                     LYRFSRKLTGIATLDDLLWATAYQVAHMLRLHVVLLIPEGEDLNVRAGYPPEDTLDEG
                     DLAAAKWAFERGQEAGRGADTLPGARRLFLPMRTARGIVAIIGLDSQAEGALLTPDQR
                     RLLDSLSDQTALAIERLHLAEEMDRARVAAETDKLRSALLT"
     gene            complement(1991..2596)
                     /gene="kdpC"
                     /locus_tag="VNN98_02675"
     CDS             complement(1991..2596)
                     /gene="kdpC"
                     /locus_tag="VNN98_02675"
                     /EC_number="7.2.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003168929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008556 - P-type potassium transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006813 - potassium ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit KdpC"
                     /protein_id="HWM61023.1"
                     /translation="MQHIRPAIVMLVLMTLLTGLLYPLGFTALAGAIFPHQAAGSLVT
                     VNGKVIGSELIGQNFAGAKYFHGRPSAAGNGYDAANSSGSNFAATSKKLKNRIAADTA
                     KLRAENPAMPVPDDLVTASASGLDPGISPAGALFQVPRIAKARHVPEAEVSALIGSHV
                     ESRLFGLLGEPHVNVLKLNLALDAYTPRMQNGAKGPNLPAG"
     gene            complement(2606..>2939)
                     /locus_tag="VNN98_02680"
     CDS             complement(2606..>2939)
                     /locus_tag="VNN98_02680"
                     /EC_number="7.2.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010395158.1"
                     /note="One of the components of the high-affinity
                     ATP-driven potassium transport (or KDP) system, which
                     catalyzes the hydrolysis of ATP coupled with the exchange
                     of hydrogen and potassium ions; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit B"
                     /protein_id="HWM61024.1"
                     /translation="GALTTFSIANDVAKYFAIIPAMFLAFYPQLQALNIMGLHSPQSA
                     ILSAIIFNALVIVALIPLALKGVAYRAAGAASLLRRNLVIYGLGGIVVPFIGIKAIDL
                     AITALGLA"
BASE COUNT          537 a          953 c          968 g          481 t
ORIGIN      
        1 gtcagcagcg ccgaacgcag cttgtcggtt tcggcggcga cgcgggcgcg gtccatctcc
       61 tcggccagat gcagccgctc gatcgccaat gccgtctgat ccgacaggga atccagcagg
      121 cgccgctggt cgggcgtcag aagcgcgcct tcggcttgtg aatccaggcc gataatcgcc
      181 acgatgccgc gcgccgtgcg catgggcagg aacaaccggc gggcgcccgg caaggtatcg
      241 gcgccgcgcc cggcttcctg gccgcgctca aaggcccatt tggcggcggc aaggtcgccc
      301 tcgtccagcg tgtcttccgg cggatagccg gcgcggacat tcaaatcctc gccttccggt
      361 atcaacaaca ccacatgcag gcgcagcata tgcgccacct gataggccgt ggcccataac
      421 aggtcgtcca gggtggcgat gccggtcagc ttgcggctga aacggtagag gtcctcagtg
      481 gtggcggcgc gctgccgcgc cacgatggcc tgcatccgca cccgcgccgt caggttgctg
      541 gcgatggcgg ccaccaatgt gaaaaccagc aaggtaacga cattctccgg gtcggcgatg
      601 gtgaaagtgt agagcggcgg caggaaaaag aaattatacg ccagcgccag aagcaggcag
      661 gcgaacagcg atggccacaa gccgaaggtg acggcgctgg ccagcaccgc caccagcagc
      721 accagcgcga cattggaaac cgccagggtc tggcgcagca acaggctgac accaagcccc
      781 atcaggctga tggcgaagct gccggcgaag gcgcgcggct ccaggcgggg ccgttccggc
      841 ggtgcaagtt tggcgatatc ctgcttgtcg ccacgatcag gaacgacatg cacacccatt
      901 tccccggcgc ggcggacgat ctcctgcgcc agcgagggac gcagaaaatc ccgccagcgc
      961 gaaccgcgcg acgccatggt gacaatgtga gtgacattgt tggcgcgggc gaactggatc
     1021 acgccctccg cctcgctggc ggcgggcacg gtggccgcca ccccgcccat gcgttcggcc
     1081 aggcgcagcg cctgagcgac aaggtcgcgt tcggcctcgc tggcggcgcc ggtctccaca
     1141 tgaatcgcgg tccaggaggc gcgcagccgg tcggccagcc gccgcccata gcggatcgct
     1201 tgcgccgcgc cggggcgggc attcaccgcc accagaaggc gctcgctggc ttcccatggt
     1261 ccgctgatcg catgggcgcg catgtaatcc accatctgcg catccacccg ctgggcggta
     1321 cggcgcagcg ccagctcgcg cagcgccgcc agattgccgg ccacaaagta attctgcgcc
     1381 gcccgcgtcg ccgcctcggg caaatagact ttgccgtctt tcagccgctg cagcaggtct
     1441 tcgggagtga ggtccaccag ttcgatgtcg tcggcgcgat cgagaatgga atccggtacc
     1501 gtctcgcgca cccgcacctt ggtgatcttg gccaccacat cgttcaggct ttcgacatgc
     1561 tggacattga gggtagtgta gacgtcgatc cccgccgcca gcagctcctc cacgtccata
     1621 taacgcttgg gatggcggct gccgggggca ttgtcatgcg ccaactcgtc caccagcacc
     1681 aggcgcgggc ggcgttgcag gatggcgtcc agatccatct ccgccagcac ccggccctta
     1741 tagggcgtgc gttttttggg aacgctttcg atgcccttgg tcagcaggtc ggtctcgacc
     1801 cggccgtgag tttcgaccac gccgatcacc gcatccacgc cgtccagctt gcggcggcgg
     1861 gcctgcacca gcatctcata ggtcttgccg actccgggcg ccgcgcccag gaatatcttc
     1921 aaccggccac ggcccgcctg ccccgcttct ttcagcaagg cgtccggcga aggcctgttg
     1981 tcggtgtcgg tcatccggcc gggagattag gccctttcgc cccgttctgc atgcggggcg
     2041 tgtatgcatc caacgcaaga ttgagcttca ggacattcac atgcggctcg cccagcaggc
     2101 cgaaaaggcg gctttcgaca tggctgccga tcagcgccga aacctcggcc tcgggcacgt
     2161 ggcgggcctt ggcgatgcgg ggcacctgga acagggcgcc ggcgggcgag ataccggggt
     2221 ccaggccgct ggccgaggcc gtcaccagat catccggcac cggcatggcg ggattttcgg
     2281 cccgcagctt ggccgtgtcg gcggcgatgc ggttcttcaa tttcttggag gtagcggcaa
     2341 agttggagcc ggaggaattg gcggcgtcat agccattgcc cgccgccgag gggcggccat
     2401 ggaaatattt ggcgccggcg aagttctgtc cgatcagctc cgaaccgatc accttgccgt
     2461 tcacggtgac caggctgccc gccgcctggt gcgggaaaat cgctccggcc aaggcggtga
     2521 agcccagggg atagagcaac ccggtgagaa gggtcatcaa gaccagcatg acgatagcgg
     2581 ggcggatatg ttgcattgcg gactcctaag ccaagccgag agcggtgatg gccaggtcga
     2641 tcgccttgat gccgatgaag ggcaccacga tcccgcccag gccatagatc accagattgc
     2701 ggcgcaagag gctggcagcc ccggcggcac gataggccac gcctttcagt gccagcggga
     2761 tcaaagccac gatgaccagg gcgttaaaga tgatcgctga caggatggcg ctttgcgggc
     2821 tgtgcagccc catgatgttc agggcctgaa gctgaggata aaaggccagg aacatagctg
     2881 gaatgatggc gaaatatttc gccacgtcat tggcgatgga aaatgtggtc agcgctccg
//
LOCUS       DATMDK010000136         2242 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1440900,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000136 DATMDK010000000
VERSION     DATMDK010000136.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2242)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2242)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2242
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1440900"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..490)
                     /locus_tag="VNN98_02685"
     CDS             complement(<1..490)
                     /locus_tag="VNN98_02685"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61025.1"
                     /translation="MDKRQFLAAAAALAATPALAQTPKLGTDELGRTLASLKPKLVPR
                     RKAKTAKLFLTPPCWPNAITADPQGRGFWVQQQRHDRGPEIAWLLDRKGKVLHSVVTK
                     CEDCSGMAVGNGFVWSGANGASVHNPPDPPIEGVFQTDMDGKTVSQRQIPFGPKNNGG
                     SCH"
     gene            complement(602..1789)
                     /locus_tag="VNN98_02690"
     CDS             complement(602..1789)
                     /locus_tag="VNN98_02690"
                     /EC_number="3.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF021778.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0052689 - carboxylic ester hydrolase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lactonase family protein"
                     /protein_id="HWM61026.1"
                     /translation="MKIFHATAAVAALAAVLGAANTANAARAYIGTYTPDPAEPRSGA
                     NNHGEGIYLVNIDDATGAPSGPKLVAKTLSPSWVTLSADHKFLYAVNEIASYGNKSGS
                     VTAYAVDSASGALKQLNVVDSGGSIPCFVSIHPSGKFLLTANYTGGSYSVTRIKPDGS
                     LGETTDVVKPGGPMSVYNAADKPVGMLPSMEPHGSRGHMILPDPSGQYVVGADAGRDQ
                     IFVWKLDTGTGKLAEVSVTKSVPGAAPRHFAFSPDGKTLYQQQEQDSRLSVYSFAGGK
                     LTLKGPSISTLPPGFEGSNTTSELLIDKAGKHLYGANRNHDSIATMAVSADGGVKLVA
                     NTHTEGTIPRSLTLDPTGKFLYSLNQGASNVTTFRIGANGVPKFTGNFLGLGTPAVMV
                     FLP"
BASE COUNT          397 a          696 c          697 g          452 t
ORIGIN      
        1 cgtgacagga accgccattg tttttggggc cgaagggaat ctggcgctgg ctgacggtct
       61 tgccgtccat atcggtctgg aagacgcctt cgatcggcgg atcgggcgga ttgtgcaccg
      121 aggcgccatt ggcgccgctc cacacaaagc cgttgcccac cgccatgccg ctgcagtcct
      181 cgcatttggt caccacgctg tgcagcacct tgcccttgcg gtccaaaagc cacgcaatct
      241 ccggcccccg gtcatgacgt tgttgctgca cccagaagcc gcgcccttgc ggatcggcgg
      301 tgatggcatt gggccagcaa ggcggcgtca ggaacagctt ggcggttttg gccttgcgac
      361 ggggaacgag tttgggcttc aggctggcca aagtccggcc caattcatcg gtgcccagct
      421 ttggggtttg cgccaatgcc ggggtcgccg ccagcgccgc cgcggcggcg aggaattgtc
      481 tcttgtccat tgtactacct cccaacactc tcgacctgtt gcctgccctt cgctgtcgct
      541 ccgggcgttc ggcgctcgaa atggtccacc ggaccatttc gtcgccttcg gcgaacgcgc
      601 ctcacggcaa gaacaccatc accgccggcg tgcccagccc taagaagttg ccggtgaatt
      661 tcggcactcc gttcgcgccg atacggaagg tggtgacatt gctggcgccc tggttgagcg
      721 aataaaggaa cttgccggtc ggatcgaggg tcaggctgcg cgggatggtg ccttcagtgt
      781 gggtgttggc gaccagcttc acgccgccgt cagcgctcac cgccatggtg gcgatggagt
      841 catggttgcg gttggcgccg tagagatgct tgcccgcctt gtcgatcagc aattccgagg
      901 tggtgttgct gccctcaaag ccggggggaa gcgtggaaat ggacgggccc ttcaaggtca
      961 gcttgccgcc ggcaaaacta tagaccgaca aacgggaatc ctgttcctgc tgctgataga
     1021 gggttttgcc gtccggcgag aaagcgaaat gccgcggcgc ggcgccgggc acagacttgg
     1081 tcaccgatac ttccgccagc ttgccggtgc ccgtgtccag cttccacacg aatatctggt
     1141 cgcgtccggc atcggcgccc accacatact ggccgctggg atcgggcagg atcatgtggc
     1201 cgcgtgaacc atggggttcc atgctgggga gcatccccac cggcttgtcg gcggcattgt
     1261 agacactcat cgggccgccc ggcttcacca catccgtggt ttcgcccagg ctgccatcgg
     1321 gcttgatgcg ggtcaccgaa taggaaccgc cggtataatt ggccgtcaac agaaatttcc
     1381 ccgacggatg aatgctgaca aagcagggaa tggagccgcc cgaatccacc acattcagct
     1441 gcttgagcgc gccgctggcg ctgtccaccg cataggctgt gaccgagccg cttttgttgc
     1501 cgtagctggc gatctcgttg accgcataga gaaatttgtg atcggccgac agcgtgaccc
     1561 aggacggcga cagagtcttg gccaccagct tggggcccga cggcgcgccc gtggcgtcat
     1621 cgatgttcac cagatagatg ccttcgccgt ggttgttagc gcctgaccgc ggttccgccg
     1681 gatcgggggt atatgtgccg atataggcgc gggctgcatt ggcggtgttg gcagccccca
     1741 acaccgcagc aagggcggca acggcggcgg tggcgtgaaa gattttcatg actgtctcct
     1801 tttgagatcg attgccggat tggggcacga aacacgcaag gccgccatgg agaccgcatc
     1861 acgaatttgc aaagctgaaa ccattccccg cccggactct tattatttat gggcgaattc
     1921 ctagcatgag gccgggcggc gcccaaatcc tgtgcattgt gcggagccgc aatccagtat
     1981 tcccgccgcc atgcacccca agcccttgat agcaccggcc cacggtgaac tccccagtct
     2041 ttacagggcc atagcccctc gcattgacgt caagttaaca ctgcctgccc tagattcggc
     2101 gcatgttaag tgtcatcggc tgcatcaccc aacagcacga tctacggctc gtcttactgg
     2161 cgggcctatt gtgcttctgc gcctgcgcca cggcgatgag catgatcggg cgcgcgcgac
     2221 gcgccgttgg acgcgtgcag tt
//
LOCUS       DATMDK010000137         5303 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_3272865,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000137 DATMDK010000000
VERSION     DATMDK010000137.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 5303)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5303)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5303
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3272865"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            109..2766
                     /gene="alaS"
                     /locus_tag="VNN98_02695"
     CDS             109..2766
                     /gene="alaS"
                     /locus_tag="VNN98_02695"
                     /EC_number="6.1.1.7"
                     /inference="COORDINATES: protein motif:HMM:TIGR00344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004813 - alanine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006419 - alanyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alanine--tRNA ligase"
                     /protein_id="HWM61027.1"
                     /translation="MPTANELRQGFLDYFKGHGHAVVPSSSLIPQADPTLLFTNAGMV
                     QFKGVFLGEEHRAYTRAASSQKCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYF
                     KEDAITFAWDFITKVVGLPKDKLLITIYPTDDQARQLWKKIAGFSDDRIIGHESNLWA
                     MGPTGPCGYCSEIFFDQGPSVAGGPPGSADEDGDRYLEFWNLVFMQFEQVDEKTRLDL
                     PKPSIDTGMGLERIAAILQGVTNNYDVDLFRHLIAASESASGVASTGEATFSHRIIAD
                     HLRATSFLIADGVLPSNENRGYVLRRIMRRAIRHAHLLGTKDPLMHRLVPALVAEMGS
                     AYPELQRSEGMIAETLKLEEIRFRGETLVRGLKLLDEASTGLKSGDRLKGEVAFKLYD
                     TYGFPLDLTEESLRARGVTVDTEGFAAAMQKQKTEARASWSGSGEAASEAQWFAVLDE
                     VGRTEFLGYDTEEAEGVVLAMFKDGGRVMAANAGETVEIVTNQTPFYGESGGQAGDTG
                     HLISSKAKGQVTDTQKMLGALHIHSVRITEGSLAPGDAVDLKVDTERRRATRANHSAT
                     HLLHAALKRVLGGHVSQKGSLVDAERLRFDFSHPKPVSAEELERIEVQVNAVIRQNSD
                     ISTRLLPTDQAIAAGAEALFGEKYGDEVRVLSMGADLDADKAYSVELCGGTHVHRLGD
                     IGLFTIVSESAVAAGVRRIEALTSEHARRYLAGQAEIAREAASAIKTPIGELASRVAQ
                     LSEDRRRLERELTEAKKQLALAGPAKGGDDGMETIAGLKAVLRLVEGVSPKDLKSLAD
                     GAKSQVGSGVVAFVAAADGKASIVAGVTDDLTARISAVDLVRVAAEALGGKGGGGRPD
                     MAQAGGPDNGNPSLALDAIRKKLGELASV"
     gene            complement(2901..3116)
                     /locus_tag="VNN98_02700"
     CDS             complement(2901..3116)
                     /locus_tag="VNN98_02700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020045099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF465 domain-containing protein"
                     /protein_id="HWM61028.1"
                     /translation="MSRVVGPNEVAARAKLTQLTQEHRDLDAAIEAMVLSGSPDLLAL
                     SRLKKRKLQLKDEITEINNGLLPDIIA"
     gene            complement(3113..3736)
                     /locus_tag="VNN98_02705"
     CDS             complement(3113..3736)
                     /locus_tag="VNN98_02705"
                     /inference="COORDINATES: protein motif:HMM:NF004685.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UbiX family flavin prenyltransferase"
                     /protein_id="HWM61029.1"
                     /translation="MARGGNPKNEAERLVIGLSGASGVAYGIRLLEACTELGIESHLV
                     MTKPAEMTIGYETKLSPKQVAAKADYSYAVTDIAAPIASGSFKTKGMIVAPCSVRSMS
                     EIATGVTTSLLTRAADVMLKERRPLILMVRETPLHLGHLRTMTALAEMGAIILPPVPA
                     FYAEPKSLCDLVDQMVGRALDLLGYDWPDMKRWGEELAKGKRKKNPK"
     gene            3911..4084
                     /locus_tag="VNN98_02710"
     CDS             3911..4084
                     /locus_tag="VNN98_02710"
                     /inference="COORDINATES: protein motif:HMM:NF016231.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF465 domain-containing protein"
                     /protein_id="HWM61030.1"
                     /translation="MALQGHINHLSNQHRKIEDIIESEMANPDWDEIRVAALKKQKLR
                     IKDELERLRTTVN"
     gene            complement(4077..>5303)
                     /locus_tag="VNN98_02715"
     CDS             complement(4077..>5303)
                     /locus_tag="VNN98_02715"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TCR/Tet family MFS transporter"
                     /protein_id="HWM61031.1"
                     /translation="ESPVTSRYALAFIFITMLVDTIGLGVIIPVSPGIIAQLTHQPIS
                     GAARWGGWLFFLYALMQFVCAPVIGNLSDRFGRRPVLILSLLMLGVDYLITGFAPTIV
                     WLFIGRILSGMAGAAYPTVNAYIADVSPPEKRAANFGLVGAAFGVGFILGPALGGFVG
                     EHLGLRAPFFVAAGLSFANALFGLFVLKESLPPERRRKFEWWRANPFGALKALVRYRT
                     LGLLFVVLVLAQLAHDSLPSTWTYYTMLKFHWGPGDVALSLVAIGVLTTLSFAILPRL
                     LVPRLGETRTVILGFLCGALSYAGYAFATQAWIFYAWMIVFTFGGVAGPSLTAILSKD
                     VPADEQGELQGVVASITSLTSVGAPLLMTSLLAWFSGPHAPVYFPGAAFLAAALCELG
                     GLVLFALAMRPARELS"
BASE COUNT         1054 a         1690 c         1680 g          879 t
ORIGIN      
        1 agggtcgccg gcgggcgggc ttgctccggg ggcgcgggtt ttccgacgac gtcagcgaga
       61 gcgtgctcgg agtcacggcg aaccattcat gattctggtt ggtgatccat gccgacggcg
      121 aacgaattgc gacaagggtt cctggactac ttcaaagggc atggccacgc cgttgtcccg
      181 agttcctcgc tgattccgca ggccgatccc acactgctct tcaccaacgc cggcatggtc
      241 cagttcaagg gcgtcttcct cggagaggag caccgcgcct acacccgggc cgcctcttcg
      301 cagaaatgca tccgggccgg cggcaagcac aacgatctgg acaatgtcgg ctacaccgcc
      361 cgccaccaca cctttttcga gatgctgggg aatttctcct tcggcgatta cttcaaggaa
      421 gacgccatca ccttcgcctg ggatttcatc accaaggtgg tggggctgcc caaggacaag
      481 ctgctgatca cgatctatcc caccgacgac caggcgcgtc agttgtggaa gaagatcgcc
      541 ggtttttccg acgaccggat catcggccat gaaagcaatc tctgggcgat gggccccacg
      601 ggcccttgcg gctattgctc ggaaattttc ttcgaccagg gccccagcgt ggccggcggc
      661 ccgccgggca gcgcggacga agacggcgac cgctatctgg aattctggaa cctcgtgttc
      721 atgcagttcg agcaggtgga cgagaagacc cgcctcgatc tgcccaagcc ctcgatcgac
      781 accggcatgg ggttggagcg catcgccgct atcctgcaag gcgtcaccaa caattacgat
      841 gtcgatctgt tccgccacct gattgcggcg tcggaatcgg ccagcggcgt ggccagcact
      901 ggcgaggcga ctttcagcca tcgcatcatt gccgatcacc tgcgcgccac ctcctttttg
      961 atcgccgatg gcgtgctgcc ctccaacgaa aaccgcggct atgtcctgcg ccggatcatg
     1021 cgccgcgcca tacggcatgc gcatctgctc ggcaccaagg atcccttgat gcaccggctg
     1081 gtgccggcgc tggtggccga gatgggctcg gcctatcccg aactgcagcg cagcgagggc
     1141 atgatcgccg agaccctcaa gctggaagaa atccgcttcc gcggcgaaac cctggtgcgc
     1201 ggcctcaagc tgctggacga agccagcacg ggcctcaaaa gtggcgaccg cctcaagggc
     1261 gaggtggcgt tcaagcttta cgatacctac ggcttcccgc ttgatctcac cgaagaatct
     1321 ctgcgcgccc gcggtgtcac tgtggacacc gaaggcttcg ccgccgcgat gcaaaagcag
     1381 aagaccgaag cgcgcgcctc ctggtcgggc tcgggcgaag ccgccagcga agcgcaatgg
     1441 ttcgcggtgc tggacgaagt cggccgcacc gaatttctgg gttacgacac cgaagaagcc
     1501 gaaggcgtgg tcctggccat gttcaaggat ggcggcaggg tgatggcggc gaacgccggt
     1561 gagacggtgg aaatcgtcac caaccagacg cccttttacg gcgaatccgg cggtcaggcc
     1621 ggcgacaccg gtcatctcat ctcgtccaag gccaagggcc aggtcaccga cacccaaaag
     1681 atgctgggcg cgctgcatat ccattccgtg cgtatcaccg aaggcagtct tgcccccggc
     1741 gacgcggtgg acttgaaagt ggataccgag cgccgccgcg ccacccgcgc caatcacagc
     1801 gccacccatc tgctgcatgc cgcgctgaaa cgcgtgctgg gcggccatgt cagccagaag
     1861 ggttcgctgg tggatgccga gcggttgcgc tttgacttct ctcaccccaa gccggtatca
     1921 gcggaagaac tggaacgcat cgaagtccag gtaaacgcgg tgatccgcca gaactccgac
     1981 atctccaccc ggctgctgcc caccgaccag gccatcgctg ccggggcgga agctctgttc
     2041 ggcgagaaat atggcgacga agtgcgggtg ctttccatgg gcgccgatct ggacgccgat
     2101 aaggcttatt cggtcgaact gtgcggtggc acgcatgtcc accgcctggg cgatatcggg
     2161 cttttcacca tcgtgtcgga aagcgccgtg gccgccggcg tgcgccgcat cgaggcgctg
     2221 acatccgaac atgcccgccg ctatctggcg ggccaggcgg aaatcgcgcg cgaggccgcc
     2281 tcggcaatca agacgccgat cggcgaactg gcaagccggg tggcgcagct gtcggaagac
     2341 cgccgccggt tggaacgcga actgaccgaa gccaagaagc agctggcgct ggcgggccct
     2401 gccaaaggcg gcgacgacgg catggaaacc atcgccggcc tgaaagccgt gctgcggctg
     2461 gtggaaggcg tctcgcccaa agacctcaaa agcctggccg acggcgccaa aagccaggtc
     2521 ggctccggcg tggtcgcctt tgtggcggcg gcggacggca aggcctcgat cgtcgccggc
     2581 gtcaccgacg atctgaccgc gcgcatcagc gcggtggatc tggtgcgggt ggcggcggaa
     2641 gccctgggtg gcaaaggcgg cggcggccgc cccgacatgg cccaggcggg cgggcccgac
     2701 aacggcaatc cgtcgctggc gctggatgct atccgcaaga agctgggcga actggcatcg
     2761 gtttagtccc cctcacccgc ggtcgctgcg ctcccttgcc ctccacgggg cgcgcttggc
     2821 cgcgcgcccg tccttcggac cccccatcgg gggagaggga agagcgcgcg cgagggtgag
     2881 ggggactttt cgcgggatac ttaagcaata atatccggca acagcccgtt gttgatctcg
     2941 gtgatttcgt ctttcagttg aagcttgcgc ttcttcagcc gcgacagcgc cagcagatcg
     3001 gggctgcccg acagcaccat tgcctcgatg gcggcgtcca ggtcgcggtg ctcctgcgtc
     3061 agctgggtca gcttggcgcg ggcggcgact tcattgggac cgaccacgcg gctcatttgg
     3121 gattcttctt ccgcttgccc ttggccagtt cttcgcccca gcgcttcatg tcgggccagt
     3181 catagcccag caggtccagc gcccgtccca ccatctggtc caccagatcg cacaaggatt
     3241 tcggctcggc gtaaaaagcg ggcaccggcg gcaggatgat ggcgcccatt tcggccagcg
     3301 ccgtcatggt gcgcagatgt cccagatgca gcggtgtctc gcgtaccatc aagatcagcg
     3361 ggcggcgttc cttcagcatc acgtccgcgg cgcgggtgag caggctggtg gtcacgccgg
     3421 tggcgatctc gctcatgctg cgcacgctgc aaggcgccac gatcatgccc ttggtcttga
     3481 aactgccgct ggcaatgggc gcggcgatat ccgtcaccgc atagctgtaa tcggctttgg
     3541 cggcgacctg cttgggcgac aattttgttt cgtagccgat ggtcatttcc gcgggcttgg
     3601 tcataaccaa atgcgattct atccccaact cggtacaggc ttccagcagg cggatgccat
     3661 aggccacgcc cgaggcgccg gacaaaccga taaccagccg ttctgcttcg ttttttgggt
     3721 tcccgccgcg cgccatgccc cccgttagca cttcttaagc caaggacaaa gagtttcggt
     3781 tccgaaggtt ttgggggatg acaggacccg gctttggtgg ttcacttttg gggccaggtg
     3841 caagccattt ttcaaaattt gaagaggggc gcgcgccccg ccgatcgaac tctagcgatg
     3901 aggtgaatgc atggcgctac aaggacatat caatcacttg tccaaccagc acagaaaaat
     3961 cgaagacatt atcgagagtg agatggccaa tcccgactgg gatgaaatcc gggtcgccgc
     4021 cctgaaaaag caaaagcttc gaataaagga cgaactcgag cggttgcgta caaccgtcaa
     4081 ctgagttctc gcgccggccg catcgccagc gcaaacagca ccaatccacc cagctcgcat
     4141 agcgcggctg ccaggaacgc cgcgccggga aaataaaccg gtgcgtgcgg gccgctgaac
     4201 caggccagca ggctggtcat cagcagcggc gcaccgacgg aggtcaggct ggtgatgctg
     4261 gctaccacgc cttgcagttc accctgctcg tcggcgggaa cgtcctttga caggatggcc
     4321 gtcagggaag gtccggcaac gccgccgaaa gtgaacacga tcatccaggc ataaaatatc
     4381 caggcctggg tggcgaaagc gtaaccggca tagctcaagg cgccgcagag aaatcccaaa
     4441 atgaccgtcc gggtctcgcc cagccgcggc accaacaggc gcggcaggat ggcgaaggac
     4501 agcgtggtca gcacgccgat cgccaccagc gacagcgcca catcgcccgg cccccaatgg
     4561 aatttcagca tggtgtaata ggtccaggtc gagggcaggg agtcatgcgc cagctgcgcc
     4621 agcaccagca ccacgaacag cagccccaat gtccggtacc gcaccagcgc tttgagcgcg
     4681 ccaaagggat tggcccgcca ccattcgaac ttgcgccgcc gctccggcgg cagcgattcc
     4741 ttcagcacga acagcccgaa caaagcgttg gcaaagctca ggcccgcggc gacaaagaag
     4801 ggcgcgcgca atcccaaatg ctcgccgaca aaaccgccca gggccggccc caggatgaag
     4861 ccgacgccga aggctgcgcc gaccaggccg aaattggcag cgcgcttttc cggcggcgaa
     4921 acgtcggcga tataggcgtt gacggtggga taggccgcgc ccgccatacc cgacaggatg
     4981 cggccgatga acagccagac gatggtaggg gcgaaaccgg taatcaggta atccaccccc
     5041 agcatcagta gcgacaggat cagcaccggc cgccgcccga aacggtccga caggttgccg
     5101 atgacggggg cgcagacgaa ctgcatcagg gcatagagaa agaacagcca gccgccccag
     5161 cgcgccgcgc cgctgatcgg ctgatgcgtc aactgggcga tgatgccggg cgagaccgga
     5221 atgatgacac caagcccgat ggtgtcgacc agcatggtga tgaagatgaa ggcgagcgcg
     5281 taacggctgg tcacagggct ttc
//
LOCUS       DATMDK010000138         2848 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_63155,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000138 DATMDK010000000
VERSION     DATMDK010000138.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2848)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2848)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2848
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_63155"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..330
                     /locus_tag="VNN98_02720"
     CDS             <1..330
                     /locus_tag="VNN98_02720"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61032.1"
                     /translation="DLKLRNPLAGVAEVQAPFGVPRDPRFIVISTAWVRRYLRPGVTL
                     SGGHIYSRLQQADFNNTDAQVYFRRLVSGKLNYRLAHAAHYEGLWPVVHIHDSLDEAV
                     WIFERTS"
     gene            327..1388
                     /locus_tag="VNN98_02725"
     CDS             327..1388
                     /locus_tag="VNN98_02725"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF045194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HWM61033.1"
                     /translation="MTARRILICLHDFSRGGTERIAIGLAASWVEAGRDVTILCGSGE
                     GGLRDTVDPRVTVVALDPPVRRGFLSRFRLGREMGKKLGALCPDVIFLPGNFHFLLAN
                     ALRRADPRPVIVLKISNPPLPASAPVAKLVFRHFTRAVDGFAAMNGGLARELEALLPG
                     RAVAALHDPVYIRPAAVASHTGGRNILWIGRLESQKDPQLALQTIQNMDGHLTMLGDG
                     ALGEEMKRQISAMGLEGKVTLPGYAPQIEPYLAAADALLITSRYEGGPAVAVEALAQG
                     VPVVSTDCSYLLHDLITTAEAGRIVASRDPRDLASALAAVCEQPRAPEKLRALAAPFE
                     PRACAKAYLDWFDTLTRHG"
     gene            1393..>2848
                     /locus_tag="VNN98_02730"
     CDS             1393..>2848
                     /locus_tag="VNN98_02730"
                     /inference="COORDINATES: protein motif:HMM:NF015836.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61034.1"
                     /translation="MRRSLLILAGVTLVTAWFSVLFYFPDEHYQVLEFMSYRLGITPA
                     SELPWEFSARIRPWFQPLVYFLIAKPLLLLGLKDMFTIAFVLRLATGLFSLAALAVFA
                     RAVLSTIAGDEEKRAFVRYLPLFGFLPYLFVRTSSETLSAAFFALGLALAMDRRTQAR
                     LALAGLCCGLAFESRYQTALLGAGLLAWLIIIARARLPALAAFIGGGLAAMALGATAD
                     RWGYGAWVFPPYDYFQVNIVQGVAAKTFGREPVFAYLYLLPAQLFFAITLVLMAAMAG
                     MWLRNPRHPITWVTLPFVLAHVLIAHKEARFLFPLAILATAFPVLGFSPQLPLWRESF
                     ARLWGWRNGWAAKTVTAISLLGMAYFAVYPFGVRPHMPMARYLYRHWPGTVYSLAPAF
                     QSYPIYRPAGFKSERLKDAAQLDALLNKGPVFLMSETPIPPSGIPANARVTLLYSEFP
                     LTRLGYGETGANYIPGYTDFAARHGFLKLLPLYWY"
BASE COUNT          401 a          915 c          909 g          623 t
ORIGIN      
        1 gacctcaagc tccgcaatcc cttggccggt gttgccgaag tgcaggcgcc attcggcgtt
       61 ccccgcgatc cgcggttcat cgtgatcagc acggcctggg tgcggcgcta tctgcggccg
      121 ggcgtgacat tgagcggcgg gcacatctat tcccggctgc agcaggcgga tttcaacaac
      181 acggacgcgc aggtctattt ccggcgcttg gtatcgggaa agctgaatta ccggctggcg
      241 catgccgccc attatgaggg gctgtggccg gtggtgcata tccatgacag cctggacgag
      301 gcggtctgga ttttcgagcg cacctcatga cggcccggcg aatcctgatc tgcctgcacg
      361 atttttcgcg cggcggcacc gagcgcatcg ctatcggtct ggcggcgagc tgggtggagg
      421 ccgggcgcga cgtcaccatc ctgtgcggca gcggcgaagg cggtttgcgc gatacggtgg
      481 acccgcgtgt gacggtggtg gctctggacc cgcccgtccg ccgcggattt ctgtcgcgct
      541 tcaggttggg gcgcgagatg ggaaagaagc tgggtgccct gtgccccgac gtgattttcc
      601 tgccgggcaa ttttcacttt ctgctggcga atgcgctgcg ccgggccgat ccgcgtccgg
      661 tcatcgtttt gaaaatttcg aatccgccgt tgccggcctc tgcgcctgtc gccaagctgg
      721 tctttcgcca cttcacccgt gccgtggatg gttttgccgc catgaatggc gggcttgcgc
      781 gcgaactgga ggccctgctg cccggccgcg ccgtcgccgc tctgcatgat ccggtctaca
      841 ttcgtccggc cgctgtggca tcgcataccg gcggccgcaa cattctgtgg atcgggcggc
      901 tggagtcgca gaaagacccg caactcgcgc ttcagaccat ccagaacatg gacggccact
      961 tgaccatgct gggcgacggg gcgcttggcg aggagatgaa gcggcaaatc tccgcaatgg
     1021 ggttggaggg caaggtgacc ttgccgggct atgcgccgca aatcgaaccg tatctcgcgg
     1081 ctgccgacgc gctgctcatc acctcgcgct atgagggcgg cccggcggtg gcggtcgagg
     1141 ccctggccca gggcgtgccg gtggtcagca ccgactgttc ttatctgctg catgacctca
     1201 tcaccacggc cgaagctggc cgcattgtgg cctcgcgtga tccgcgcgac ctcgcatcgg
     1261 ccctggcggc ggtgtgcgag cagccgcgag cgccggaaaa gttgcgcgcc ctggccgcgc
     1321 cgttcgagcc gcgcgcctgt gccaaagcct atctggactg gttcgatacg ctgacccgtc
     1381 atggatagag aattgcgccg cagccttttg attctggccg gcgtgacctt ggtcaccgcc
     1441 tggttcagcg tgctgttcta tttccccgac gagcattatc aggtgctcga attcatgtcc
     1501 tacaggctgg gcattacacc ggcgtccgaa ctgccctggg agttttccgc ccgtatccgg
     1561 ccctggttcc agccgctggt ttatttcctg attgccaagc cgcttctgct gctgggcctc
     1621 aaggacatgt tcaccatcgc cttcgtcctg cggctggcga cgggcttgtt ctcgctggcg
     1681 gcgctggcgg tgttcgcgcg cgccgtcttg tccaccatcg ccggggacga ggaaaagcgc
     1741 gcctttgtcc gctatctgcc gttgttcggt ttcttgcctt atctgtttgt gcggacctcg
     1801 tcggaaaccc tgtcggcggc gttcttcgcg ctgggcttgg cgctggcgat ggaccggcgc
     1861 acacaagcgc gcctggcgct ggcgggcctg tgctgcggcc tggcattcga gagccgctat
     1921 caaaccgctt tgctgggcgc ggggctgttg gcttggctca tcatcatcgc acgcgcgcgc
     1981 cttcccgcac tggcggcctt catcggcggc ggattggccg ccatggcgct gggcgcgacg
     2041 gccgaccgct ggggttatgg cgcttgggtc tttccgcctt acgattattt ccaggtcaat
     2101 atcgtgcaag gcgtcgcggc caagaccttc ggccgcgaac cagtcttcgc ctatctctac
     2161 ctgctgccgg cgcaattgtt cttcgctatc accttggtgc tgatggccgc catggccggc
     2221 atgtggctgc gcaatcctcg tcatccgatc acctgggtga cgctgccttt cgtgctggcg
     2281 catgtcctga tcgcgcacaa ggaagcgcgc tttctgtttc cgctggcgat cctggccacc
     2341 gcctttccgg tgttgggctt ctcacctcaa ttgccgctgt ggcgtgaaag cttcgctcgc
     2401 ctgtggggct ggcggaatgg atgggccgcg aagaccgtca ccgcgatttc cctgctgggc
     2461 atggcctatt tcgcggttta ccccttcggc gtgcggccgc acatgccgat ggcgcgctat
     2521 ctctaccgcc attggccggg cacggtttac agcctggcgc cggctttcca gtcctatccg
     2581 atctatcgcc ccgccggatt caaatccgaa aggcttaagg acgcggcgca attggatgcg
     2641 ctgctgaata agggcccggt ctttctgatg tcggaaacgc cgataccgcc atcagggatt
     2701 cccgcgaacg cccgtgtcac cttgctctat tcggaatttc cgctcacccg cttgggctat
     2761 ggcgaaacgg gcgcaaatta catccccggc tatacggact tcgccgcccg ccacgggttc
     2821 ctcaagctgc tgccgctgta ctggtaca
//
LOCUS       DATMDK010000139         2912 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_63843,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000139 DATMDK010000000
VERSION     DATMDK010000139.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2912)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2912)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2912
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_63843"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1630)
                     /locus_tag="VNN98_02735"
     CDS             complement(<1..1630)
                     /locus_tag="VNN98_02735"
                     /inference="COORDINATES: protein motif:HMM:NF019335.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor plug domain-containing
                     protein"
                     /protein_id="HWM61035.1"
                     /translation="MNKYANLTATLLCSASLIALSHKAYAQSAGAAEQVESVTVTGTL
                     ITNSGVNSPTPVTVVNTDTIQNTTPDNLQDALAKLPAFLGSANQRSSATSTQGGQGNQ
                     VSLRNLGITRTLILFDGKRVAPSDAQGTVNIDGLPQMLVQRVDVVTGGASATYGSDAV
                     AGVVNFILDKKFTGFKYEAHGGISGFTDAAEESIGFAAGTDLFGGRGHLEGDIRYFHQ
                     DPVNLNARPYGANGQAWAMTGNGTAAKPFTNTPYARLVNQAEGGGVVNCTGCAANFTA
                     FTPGGDLIPFQQGIPTGTPGTNMGGDGGGYYNTSSFQSELRQAETFLRFSYQLTNDMN
                     FYIQGNWNESYNINHASATTINPGPGRGSIIPVTQAYLQPATRTALTTGNTQISPTLG
                     VPLFTYGVFFDTVGGVPVEQSGDDFRSLNLDRNMGFTAGFDGILMDKYTWSTFLTYNE
                     NRLEGAVPHNDNVQKFLAGEDAVIAPAGTTINGVNFSGQIVCQVSLTQFANLYPGCVP
                     INPFGKGALTQQMFNYYSDRTQYEATNSLLDAGGT"
     gene            complement(1754..>2912)
                     /locus_tag="VNN98_02740"
     CDS             complement(1754..>2912)
                     /locus_tag="VNN98_02740"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HWM61036.1"
                     /translation="DYPAAHSNRGNMQLMLGRPLQALACHDTAITLQPENFRAYNNRG
                     NALLDLKRLQEALHSYARAIALRPDYAEGHWNRGIALLLQGNFEEGWTEYEFRHRCAG
                     FAAPQDAYPADRLWTGQPLVGKTLLIHCEQGLGDTIQFCRYALLALSRGAHVLLSPQN
                     GLARLLDGLSPAVTVVDNGAKRAFDYHIPLLSMPLIYQTRLTSIPASIPYLAAEPERC
                     AYWRGRIGETGFKIGICWQGNRATTSDIGRSFPVRHFENIGRLGGVRLISLQKGQGAE
                     QLNSLPSGMAVEQLPAPFDDGPDAFIDTAAVMANLDLVITSDTAVAHLAGALGRPVLL
                     ALKYVPDWRWLLNRDSSPWYPSMRLFRQQAHGDWSDVFKNIETYIARLPRR"
BASE COUNT          535 a          845 c          962 g          570 t
ORIGIN      
        1 tcgtgccacc cgcgtccagc agcgaattgg tcgcctcata ctgggtgcgg tcgctgtaat
       61 agttgaacat ctgctgggtc aacgcgccct tgccgaaggg attgatgggc acgcagccgg
      121 gatacaggtt cgcaaactgg gtcagcgata cctggcagac gatctggccc gaaaaattca
      181 cgccgttgat cgtggtcccc gcgggggcaa tcacggcgtc ttcgccggcc aggaatttct
      241 gaacattgtc attgtgggga accgcgccct ccagccggtt ctcgttgtac gtcaggaacg
      301 tgctccaggt gtatttgtcc atcaggatgc cgtcgaagcc cgccgtgaac cccatgttgc
      361 ggtccaggtt caatgagcgg aaatcgtcac ccgactgctc gaccggaacc ccgccgaccg
      421 tgtcgaagaa tacgccgtag gtgaacagag gcacgccaag ggtgggggat atctgggtat
      481 tgcccgtggt cagcgccgtg cgggttgccg gctgcagata ggcctgcgtg accgggatga
      541 tgctgccccg gcccggcccg ggattgatgg tcgtcgcact ggcatggttg atattgtagg
      601 actcgttcca gttgccctgg atatagaaat tcatgtcgtt ggtgagctga tagctgaagc
      661 gcaggaaggt ttccgcctgg cgcagctcgg actggaagga cgaggtgttg taatagcccc
      721 cgccgtcacc gcccatgttg gtgccgggcg tgcccgtggg aatgccctgc tggaagggga
      781 tcaggtcgcc gccgggagtg aaagcggtaa agttcgccgc acaaccggtg caattcacca
      841 cgccgccgcc ttctgcctgg ttcacaagcc gggcataggg cgtgttggtg aagggcttgg
      901 ccgcggtgcc gttgccggtc atcgcccagg cctggccatt ggcgccatag ggacgcgcgt
      961 tcaggttgac gggatcctgg tggaagtagc ggatatcacc ttccaggtgt ccgcgccccc
     1021 cgaacaggtc cgtgccagcg gcaaagccga tcgactcttc cgcagcgtcg gtgaagcccg
     1081 atatgccgcc atgggcctcg tacttgaagc cggtgaattt cttgtccaga ataaaattga
     1141 ccacgccggc cacggcgtcg gagccgtagg tggccgaggc gccgcctgtc acgacatcca
     1201 cgcgctggac cagcatctgc ggcagcccat cgatgttgac ggtaccctgt gcatcggacg
     1261 gcgcaacccg cttgccgtca aacaggatca aggtgcgggt gatgccgagg ttgcgcaggc
     1321 tgacctggtt gccttggccg ccctgggtcg aggtcgcgga actgcgctgg ttggcgctgc
     1381 ccagaaatgc cggcagtttg gccaatgcgt cttgcagatt gtccggcgtg gtgttctgga
     1441 tcgtgtcggt gttaaccacc gtcaccggtg tcggtgagtt gacgcccgag ttggtgatca
     1501 aggtgccggt gacggtcacg gactcgacct gctccgcggc gcccgcgctt tgggcatagg
     1561 ccttgtggga aagagcgatc aggctcgcag agcaaagcag ggtcgcggtg agatttgcgt
     1621 acttgttcaa ggccgttccc caatattttg ttgatgccca agcgggctta tcgtcggggg
     1681 agcctgataa tggggtccgc tgctgtcaac caaacggcct tgtccaaatc tcgccacatg
     1741 agacgtggtg gattcagcgc cgcggaagtc tggcgatata ggtctcaatg ttcttgaaga
     1801 cgtccgacca gtcgccatgc gcctgctgcc ggaataaccg catgctggga taccaaggcg
     1861 agctgtcgcg gttcagcagc cagcgccagt cgggaacata tttgagcgcc agcagcaccg
     1921 gccgtcccag cgcgcctgcc agatgcgcga cggcggtgtc ggaagtgatc acgagatcca
     1981 gattggccat aaccgccgcc gtgtcgatga aggcgtccgg cccgtcatcg aaaggcgcag
     2041 gcaattgctc aaccgccatt cctgacggga gactgttgag ttgttcggcg ccctgcccct
     2101 tctgcaggga aatcagacga acgcccccga gccggccgat attctcaaaa tggcggacgg
     2161 ggaaagatcg gccgatatcg gaggttgtgg cacggttgcc ctgccagcat atgccgatct
     2221 tgaaaccggt ttcaccgatg cggccgcgcc aataggcgca acgttctggc tcggccgcaa
     2281 ggtagggaat ggacgccgga atgctggtga gccgcgtctg gtagatcaga ggcatgctga
     2341 gaagcgggat atgatagtcg aaggcgcgct tggcgccgtt gtccacgacg gtgacagcgg
     2401 gactcagccc gtccagcagg cgcgccagcc cgttttgcgg cgatagcagg acatgggcgc
     2461 cccttgacag ggcgagaagg gcataacggc agaactggat ggtatcgccc agtccctgct
     2521 cgcaatggat cagcaaagtt ttgcccacca ggggctggcc ggtccacagc ctgtccgccg
     2581 gatatgcatc ctggggcgcc gcgaagccgg cgcagcggtg ccggaattcg tattcggtcc
     2641 atccctcttc gaagttcccc tgcaatagaa gggcgatacc gcgattccag tggccttcgg
     2701 cgtaatcggg ccgaagcgca atggcccgtg catagctatg cagggcctct tgcagccgct
     2761 tcaggtccag caaggcgttg ccgcgattgt tgtaggcgcg gaaattttcc ggctgcagtg
     2821 tgatcgccgt gtcgtggcag gccaaagcct gtagcggccg ccccaacatg agctgcatgt
     2881 tgccgcgatt gctgtgggcg gccggatagt cc
//
LOCUS       DATMDK010000140         3600 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2580069,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000140 DATMDK010000000
VERSION     DATMDK010000140.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3600)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3600)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3600
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2580069"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..209
                     /locus_tag="VNN98_02745"
     CDS             <1..209
                     /locus_tag="VNN98_02745"
                     /inference="COORDINATES: protein motif:HMM:NF019342.4"
                     /note="Members of this family of hydrolases with an active
                     site Cys residue belong to MEROPS family C26; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="gamma-glutamyl-gamma-aminobutyrate hydrolase
                     family protein"
                     /protein_id="HWM61037.1"
                     /translation="MVNSLHSQGIDRLAPGLKIEALAPDGQIEAVSLPGAKTFALGVQ
                     WHPEWTFAANPLSRAIFTGFGRAL"
     gene            285..1865
                     /locus_tag="VNN98_02750"
     CDS             285..1865
                     /locus_tag="VNN98_02750"
                     /inference="COORDINATES: protein motif:HMM:NF012772.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HWM61038.1"
                     /translation="MSLPARLLGFAFTNADFLFEMDTKGTILFAAGAAHDLVKDSNEK
                     LVGKPAGKLFKPSEGIKFATFAKALRSGDRAGPFQLTLATGADANLAMFRLPENGANI
                     SCTLVRPGMRSPSAQIDPKTGLASRDGFMAAAQKAGDRDTLTLVDVPGLPELCAQLAP
                     DGADALMLRIGDSFQTAGASAAGRISDTGFGALAPATRGSLNLAGKVSDAIAVGGLTP
                     PKVAETRIGLQGAGLSAGQRLLALRYVIDRFADKGKVDAGDGDIAGAFAGLMDEIQLR
                     LAAMTKTVGEGAFEIAYQPISDLSTGKVSHYEALARFTNPEGTAETVQFIGALGIANS
                     FDLAVAAKVLGVIEQQSGAHIAFNISGATIASPASFGMLAAILAKRRKLAPRTLIEIT
                     ETAAITDLESAGKAIAALRAMGYRMGLDDFGAGAASVSYLHAFPVDFVKFDGTLIQKI
                     GSSPRDDALLAGLAKLCGEMGITTIAEWVETEAMANSLRAMGFHQGQGKWLGAPLLEI
                     PAAPTAVGKRQGVKESWG"
     gene            complement(2321..2923)
                     /locus_tag="VNN98_02755"
     CDS             complement(2321..2923)
                     /locus_tag="VNN98_02755"
                     /inference="COORDINATES: protein motif:HMM:NF024922.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-ketoglutarate-dependent dioxygenase AlkB"
                     /protein_id="HWM61039.1"
                     /translation="MTIAPGIFLWREKFSPLQQKALLDEVIQKLKDAPLYRPVMPGNA
                     KPFSVEESNFGTLGWVSDRCGYRYQAAHPVTSAPWPVIPSALLDLWTGINPPPLPECC
                     LVNLYRAGAKMGLHQDRDEKDISAAVIGLSLGDEALFRIGSAAKGGKTFSVPLASGDV
                     IAFGGVARLAYHGIDRIKPGSSRLIPGGGRLSLTLRRVQS"
     gene            complement(2929..3549)
                     /locus_tag="VNN98_02760"
     CDS             complement(2929..3549)
                     /locus_tag="VNN98_02760"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61040.1"
                     /translation="MRSVGDILYNFHWVVPGDAARAMQAWAGGLRPFLKRRGIAAIIN
                     LRGRNDDLAWWKQETAIAKSAGIAHLDAMLDSRKLPTQDMLVRLIETFDTAPRPFLLK
                     CSGGQDRTSYAAALYLIHRGGWQAMAAAQAQFARFPYLHFPKTQQRWLKAFLDFARQD
                     AGDQPLATWIAGSYTPEKLKAWLDAHGLAGGYASIFTVPSRSRHQW"
BASE COUNT          649 a         1180 c         1118 g          653 t
ORIGIN      
        1 tgatggtcaa ttccctgcac agccaaggca tcgaccgtct ggcgccgggt ttgaagatcg
       61 aggcgctggc gccggacggc cagatcgagg cggtatctct gccgggcgcc aaaactttcg
      121 cgctgggggt gcagtggcac cccgaatgga ctttcgccgc caacccgctc agccgcgcca
      181 tctttaccgg cttcgggagg gcgctgtgat gcccggttta tttacagcat cctaagaagt
      241 tcctggcagg ttgggttggg gcttaccctg catccgggga attcatgtcg ctgccggccc
      301 gtcttctggg tttcgccttc accaacgctg actttctgtt cgagatggac acgaagggca
      361 cgatcctgtt tgccgccggc gccgcccacg acctggtcaa ggacagcaat gaaaagctgg
      421 tgggcaagcc cgccggaaag ctgttcaagc cgtcggaagg catcaagttc gccaccttcg
      481 ccaaggcgct gcgcagcggc gaccgcgccg ggccgttcca gctgaccctg gcgaccggcg
      541 ccgacgccaa tctcgccatg tttcggctgc cggaaaatgg cgccaatatt tcctgcaccc
      601 tggtacggcc cgggatgcgc agccccagcg cccagatcga tcccaagacc ggcctggcct
      661 cgcgcgacgg tttcatggcc gccgcccaga aagcgggcga ccgcgatacc ctgactttgg
      721 tcgatgtccc cggcctgccc gaactctgcg cccagcttgc cccggacggc gccgacgcgc
      781 tgatgctgcg catcggcgac agttttcaga ccgcgggcgc cagcgccgcg ggccgcatct
      841 ccgacaccgg ctttggcgcc ctggcgcctg cgacacgcgg cagcctgaat cttgcgggca
      901 aggtcagcga cgccatcgcc gtcggcggcc tgacgccgcc caaggtcgcc gaaacccgca
      961 tcggcttgca gggcgcgggc ctcagcgccg ggcagcgcct gttggcgctg cgttatgtca
     1021 tcgaccgctt cgccgacaag ggcaaagtgg atgcaggtga cggcgacatc gcgggcgcct
     1081 ttgccggcct gatggacgaa atccagttgc gtctggcggc catgaccaag actgtgggcg
     1141 agggggcgtt cgaaatcgcc tatcagccga tcagcgatct cagcaccggc aaagtctcgc
     1201 attatgaggc gctggctcgc ttcaccaatc ccgaaggcac cgccgagact gttcaattca
     1261 tcggggcgct gggcatcgcc aacagcttcg acctggcggt ggccgccaag gttctgggtg
     1321 tgatcgagca gcaaagcggg gctcatatcg ccttcaatat ctccggcgct accatcgcct
     1381 cgcccgccag tttcggcatg ttggccgcca ttctggccaa gcgccgcaag ctggcgccgc
     1441 gcaccctgat cgagattacc gagaccgccg ccatcaccga ccttgaaagc gcgggtaaag
     1501 ccatcgctgc gctgcgcgct atgggctatc gcatggggct ggacgatttc ggcgccggcg
     1561 cggcctcggt cagttacctg cacgctttcc cggtggattt cgtgaaattc gacggcaccc
     1621 tgatccagaa gatcggcagt tccccgcgcg acgatgcgct gctggccggc ctggccaagc
     1681 tgtgcggcga aatgggcatc accaccatcg ccgaatgggt ggaaaccgaa gccatggcca
     1741 attccctccg cgccatgggc tttcaccagg gccaaggcaa atggctgggc gcgccgctac
     1801 tggaaatccc cgccgcgccc acagccgtcg gcaagcgcca aggcgtcaag gagagttggg
     1861 ggtgagaagc ggtccgccgc gcttaagcgc ggcggacaaa acgatccggc ggatcgtttt
     1921 gagcgacgaa cgccctgagc gtaagcgaag ggctggagag ctgcccgcaa agagctctat
     1981 gcccttgcgc atcccagcgc gccgcgagcc aaagcgagcg gccggatggt ccaaattgct
     2041 ctgatatttt atcaaacggc caaaaacctg cctgatttgc ccaaattcca gtatgacaga
     2101 aatagcactg tcattataat tctgtcagga aatcgaattt tcttgaaaca tgttgtattt
     2161 ctgcatagtt taatcctcga aggcggactg agctgttggc actgcccccc gctcgcttcc
     2221 agctcccgtc ttcgctgggg tttccggttc atcccctccc gggttcccct cgcgcatttt
     2281 gcgcatttgc ccccggcctc ccccggccgg gggccttttt ttagctctgc acccttcgca
     2341 gcgtcaggct cagtcgcccg ccccctggga tcagccgcga gctgcccggc ttgatgcggt
     2401 cgatgccgtg ataggccagc cgcgccaccc cgccgaaggc gatcacgtca ccagaggcca
     2461 agggcacgct gaaggtcttg ccgccttttg cagcggaccc gatgcggaac agggcctcgt
     2521 cgcccaagga caggccgatc accgccgcgc tgatatcctt ctcgtcgcgg tcctggtgca
     2581 gacccatttt ggcgccggcg cgatacagat tgaccagaca gcattcgggc aaaggcggcg
     2641 ggttgatccc ggtccacaaa tccagcagcg ccgatggaat gaccggccag ggcgcgctcg
     2701 tcaccggatg ggcggcctga tagcgatagc cgcatctgtc cgacacccag cccagcgtgc
     2761 cgaaattgct ttcttccacc gagaagggct tggcattgcc cggcatcacc gggcggtaga
     2821 gcggtgcgtc tttcagtttt tggatcacct cgtccagcaa ggccttttgc tgaagtggcg
     2881 aaaatttctc gcgccagagg aaaatccccg gcgcgatggt cacgcgcgct accactgatg
     2941 ccgggatcgc gatggcacgg tgaagataga cgcatagccg ccggccagcc cgtgggcgtc
     3001 cagccaggct ttgagttttt cgggcgtgta gctacctgcg atccaggtcg ccagcggttg
     3061 atcgcctgca tcctgccgcg cgaaatccag gaacgccttc agccagcgct gttgggtctt
     3121 ggggaaatgc aaatagggaa agcgcgcgaa ctgggcctgc gccgccgcca tggcctgcca
     3181 gccgccccgg tgaatcagat agagggctgc ggcatagctg gtgcggtcct ggccgccgga
     3241 gcatttcagc aggaagggcc gaggcgcggt atcgaaggtc tcgatcagcc gcaccagcat
     3301 gtcctgcgtc ggcagcttgc gcgaatccag catggcatcc agatgggcga tgccggcgct
     3361 tttggcgatg gcggtctcct gtttccacca ggcgagatcg tcgttgcggc cgcgcaggtt
     3421 gatgatggcg gcgatgccgc gccgtttcag aaacggacgc aggcccccgg cccaggcctg
     3481 catcgcccgc gccgcgtccc cgggcaccac ccagtggaaa ttgtaaagaa tgtcgccaac
     3541 ggatcgcata gaatgggact agcatattcg gaaaccccat gcgcatcacc aaacagatcc
//
LOCUS       DATMDK010000141         2254 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2118887,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000141 DATMDK010000000
VERSION     DATMDK010000141.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2254)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2254)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2254
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2118887"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(52..843)
                     /locus_tag="VNN98_02765"
     CDS             complement(52..843)
                     /locus_tag="VNN98_02765"
                     /EC_number="1.1.1.30"
                     /inference="COORDINATES: protein motif:HMM:NF009093.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003858 - 3-hydroxybutyrate dehydrogenase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxybutyrate dehydrogenase"
                     /protein_id="HWM61041.1"
                     /translation="MSASLKGKVALVTGSTSGIGLAIARTFAGEGADICINGFGDAAA
                     IEKERSGIEKDFGVKAIYSGADMSKGDQTEAMITDTIKQLGSVDILVNNAGIQFVSPV
                     EDFPPEKWDQIIAINLSSAFHATRAAVPGMKAKKWGRIINTASAHALVASPFKSAYVS
                     AKHGIAGFTKTVALEVATSKITCNCISPGYVWTPLVEHQIPETMKARNLTKEQVIHDV
                     LLAAQPTKEFVTSEQVAALALFLCSDDAAQITGSNYSIDGGWTAE"
     gene            969..2159
                     /locus_tag="VNN98_02770"
     CDS             969..2159
                     /locus_tag="VNN98_02770"
                     /inference="COORDINATES: protein motif:HMM:NF013862.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="patatin-like phospholipase family protein"
                     /protein_id="HWM61042.1"
                     /translation="MDTKPMPPPHPPNAHSSGHRYAPVPRPEGCGRIALVLQGGGALG
                     AYQGGVYQALHEAGLEPEWVSGVSIGGINAALIAGNPPERRLAALCEFWDRITDRAIW
                     PYTPDGDIYRQSRNTVSALTTALFGQPGMFNPHKINPWFLPPGAKDATSFYDTTPLRQ
                     TLEELVDFKRLNEGDTHFAVGAVHVLTGNYVFFDNRKEEIRIEHVLASGALPPAFPMV
                     QIGTDYFWDGGIVSNTPLQHLLAQDDGVNSLVFQVDLFSARGDLPRTMSDVLGRQKDI
                     MYSSRTRQVTDMFARLQRWKTRAYEALLKVPDADLTDEQRAMREKLSDLPQATILQLI
                     YQQKSYEGNARDYEFSADSMHEHWKNGHEDTVSTLKRKDWLKMPPDNVGVVTHDVHRE
                     NEGR"
BASE COUNT          421 a          707 c          702 g          424 t
ORIGIN      
        1 gaacaacttc ctccgagtaa ctagctcgcc gtctcccccc gcaaaattgc cctactccgc
       61 ggtccagccg ccgtcgatcg agtagttgga cccggtgatt tgtgcggcgt catcgctgca
      121 taaaaacagc gcaagggctg cgacctgctc ggaggtcacg aactccttgg tcggctgcgc
      181 cgccagcagc acgtcgtgaa tgacctgctc cttggtgagg ttgcgcgcct tcatggtctc
      241 gggaatctgg tgttcgacca gcggcgtcca gacgtagccg ggactgatgc agttgcaggt
      301 gatcttggaa gtcgcgactt ccagcgccac ggtcttggtg aagccggcga tgccgtgctt
      361 ggccgagaca taggccgact tgaaaggcga ggcgaccagc gcatgcgccg aagcggtgtt
      421 gatgatgcgg ccccacttct ttgccttcat gccgggcacc gcggcgcggg tggcatggaa
      481 ggccgatgac aggttgatgg caatgatctg gtcccatttt tccggcggga aatcttcgac
      541 cggcgagacg aactggatgc cggcattgtt gaccaggata tccaccgacc ccagttgctt
      601 gatggtgtcg gtgatcatgg cttcggtttg gtcgcccttg ctcatgtcgg cgccgctata
      661 gatcgccttg acgccgaaat ctttttcgat gccgctgcgc tctttctcga ttgccgcggc
      721 atcgccgaag ccattgatgc agatgtcggc gccttcgccg gcaaaggtgc gggcgatggc
      781 cagcccgata cccgaggtcg agccggtgac gagggcgact ttgcctttga ggctggcgga
      841 catggcggtt ctcctgaaaa aatcagccaa agaatggcac agccccgcgc tttccgaata
      901 ggcgataagg ccgcagcagc ccccttaaat cgtcagaaaa agttcgcaaa ttcggctatg
      961 attcacccat ggataccaaa ccgatgcccc caccccatcc ccccaacgcc cattcatcag
     1021 gccatcgcta cgcgccggtt ccccggcccg aaggctgcgg ccgtatcgcc ctggtgctgc
     1081 agggcggcgg cgccttgggc gcctatcagg gcggcgtata ccaggcgctg catgaggcgg
     1141 ggctggaacc ggaatgggtt tccggtgtca gcatcggcgg catcaatgcg gcgctgatcg
     1201 cgggcaatcc gccggagcgg cggctggcgg cgctgtgcga attctgggac cgcatcaccg
     1261 atcgcgccat ctggccctat acgcctgacg gcgacatcta ccgccagagc cgcaacacgg
     1321 tgtcggcgct gaccacggcg ctgttcggcc agcccggcat gttcaacccg cacaagatca
     1381 atccctggtt cctgccgccc ggcgccaagg atgccaccag cttctacgac accacgccgc
     1441 tgcggcaaac gctggaagaa ttggtggatt ttaaacggct gaacgaaggc gacacccact
     1501 tcgcggtggg cgcggtgcat gtgctgaccg gcaattatgt cttcttcgac aatcgcaagg
     1561 aagaaatccg gatcgagcat gtcctggcca gcggcgcgct gccgcccgcc ttccccatgg
     1621 tgcagatcgg caccgattat ttctgggacg gcggcatcgt ctccaacacc ccgctgcagc
     1681 atctgctggc ccaggatgac ggcgtgaatt cactggtgtt ccaggtcgac ctgttcagcg
     1741 cccggggcga tctgccccgc accatgtcgg acgtgctggg gcggcagaag gacattatgt
     1801 attcttcgcg cacccgccag gtgaccgaca tgttcgcgcg gctgcagcgc tggaagaccc
     1861 gcgcctatga ggcgctgttg aaagtgcccg acgcggacct gaccgacgag cagcgggcga
     1921 tgcgcgaaaa gctctccgac ctgccccagg ccaccatcct gcagctgatc taccagcaga
     1981 agtcgtatga ggggaatgcg cgcgactatg aattcagcgc cgactccatg catgagcatt
     2041 ggaagaacgg ccatgaggac acggtcagca ccctcaagcg caaggactgg ctgaagatgc
     2101 cgccggacaa tgtcggcgtc gttacccacg atgtgcaccg cgaaaatgaa ggccgctgag
     2161 tttggcgctt gacggtgggg cctcgatcgc cgggcggctg gccattactt ctaggttaga
     2221 agccttgccc gccacgcgcg gcttctggcg gcgg
//
LOCUS       DATMDK010000142         2844 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_3036894,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000142 DATMDK010000000
VERSION     DATMDK010000142.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2844)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2844)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2844
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3036894"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..254)
                     /locus_tag="VNN98_02775"
     CDS             complement(<1..254)
                     /locus_tag="VNN98_02775"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006801 - superoxide metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="superoxide dismutase family protein"
                     /protein_id="HWM61043.1"
                     /translation="MTRVFTFSLLALALLCAPAGAAQKARAIAHLTSLEGKPLGSVEF
                     NAVNRGVLITFDLHDLSPGAHGIHLHTSGNCDAKTGFTAAG"
     gene            355..783
                     /locus_tag="VNN98_02780"
     CDS             355..783
                     /locus_tag="VNN98_02780"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61044.1"
                     /translation="MRSSLLAAAAALTCLSSSAFAVQDTPATINGVETVCTGVGSAKD
                     DPRWAAYPIKIVLATSGGAFLANAHVSLSKGGKDVAGLDCDAPWILFKAPAGSYTATA
                     TLTGSGLSHSANVTSGSSQKEVTITFPIPSGPPSTPSVGQ"
     gene            complement(960..1163)
                     /locus_tag="VNN98_02785"
     CDS             complement(960..1163)
                     /locus_tag="VNN98_02785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002633565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005829 - cytosol [Evidence IEA];
                     GO_function: GO:0001072 - transcription antitermination
                     factor activity, RNA binding [Evidence IEA];
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cold-shock protein"
                     /protein_id="HWM61045.1"
                     /translation="MTIGTVKFFNTSKGFGFIAPEGGGKDVFVHATAVEAAGLRSLNE
                     GQKVSFDIVPDARGAKASNLKAV"
     gene            1479..2129
                     /locus_tag="VNN98_02790"
     CDS             1479..2129
                     /locus_tag="VNN98_02790"
                     /inference="COORDINATES: protein motif:HMM:NF012487.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61046.1"
                     /translation="MTARLEVIVGPMFSGKTERLIARLHRAQYARKRVRILKPAHDTR
                     TQGSIASRAVSADGTTEVTATLSAIMVRSAADFARAIADDAYDVLAVDEAQFFPLDEP
                     MTDALGWFGRAIRDLLRQKAKSDLRIIVAGLDMDFAEAPFGPMPGLLAMADTVEKLTG
                     VCMVCGSDGGYISHRVIPGDAQLVVGDAGEYQVRCRACYEPPGIKGAVPDRKAAGG"
     gene            2373..2792
                     /gene="arsC"
                     /locus_tag="VNN98_02795"
     CDS             2373..2792
                     /gene="arsC"
                     /locus_tag="VNN98_02795"
                     /EC_number="1.20.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003071185.1"
                     /note="This arsenate reductase requires both glutathione
                     and glutaredoxin to convert arsenate to arsenite, after
                     which the efflux transporter formed by ArsA and ArsB can
                     extrude the arsenite from the cell, providing resistance;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_function: GO:0008794 - arsenate reductase
                     (glutaredoxin) activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="arsenate reductase (glutaredoxin)"
                     /protein_id="HWM61047.1"
                     /translation="MSRSSDKRHWREDRIVASTVCDKVLKMKVTIYHNPQCSNSRKAL
                     EIIREKGIEPKIVEYLKTPLPPNALRALIKKLHVPVRDAMRTQEPAYAQMKLDGADDD
                     TLLAAIAAHPILLNRPIVVTDKGAKLCRPGEEVAGLL"
BASE COUNT          537 a          877 c          918 g          512 t
ORIGIN      
        1 ccggcggcgg tgaagccggt cttggcgtcg caattgccgc tggtgtgcag atggatgccg
       61 tgcgcaccgg ggctgaggtc gtgcagatcg aacgtgatca gcacgccgcg attgacggcg
      121 ttgaattcca ccgaacccag cggcttgcct tccaggctgg tcagatgggc gatggcgcgg
      181 gccttttgcg ccgcgccggc gggcgcgcac agcaacgcca gcgccaacaa ggaaaaggtg
      241 aaaactctgg tcatggcgcc cccgaaaagg gccgcagctt gccatagccg gggaaccggt
      301 ggaaccaggg cgcgcgcgga acgctttcta atgcggtcat aggaggtatt gaaaatgcgc
      361 agttccttgt tggccgccgc ggcggccctg acctgtcttt cttcttcggc cttcgcggtc
      421 caggacaccc ccgccaccat caacggcgtg gaaaccgtct gcaccggggt cggctcggcc
      481 aaggacgatc cgcgctgggc cgcctatccg atcaagatcg tgctggcgac cagcggcggc
      541 gcgttcctgg ccaatgccca tgtcagtctc agcaaaggcg gcaaggacgt cgccgggctg
      601 gattgcgatg cgccgtggat cctgttcaaa gcgccggccg gcagctacac cgccaccgcc
      661 acgttgaccg gcagcggcct gtcgcacagc gccaatgtca ccagcggttc cagccagaag
      721 gaagtaacca tcactttccc gataccatcg ggtccgcctt cgacgccgtc cgtcgggcag
      781 tagtggcgtg accaccggag cgaccgcgaa ccgtccgata ggacggcctc gcggcgcggc
      841 cactttttta atggtcgcgc cgcgaggccc tacgcttcgc tccgggttcg cggtcgctcc
      901 aaagaaaaag gccggtggag aaatccaccg gcccttaatc cgaaacgttc agaccgtgat
      961 tagacggcct tgaggttcga ggccttggcg ccgcgcgcgt ccggcacgat gtcgaacgag
     1021 accttctggc cttcgttcag gctgcgcagg ccggccgctt ccacggcagt ggcgtgcacg
     1081 aacacgtcct tgccgccgcc ttccggcgcg ataaagccaa aacccttgga ggtgttgaag
     1141 aatttcacgg ttccgatcgt catggtacat tcctgcattg tttttccgca cagcagaatg
     1201 ccgggcggaa cgggctttac ggtgtcgcag ggaaggaagt tcaaccgtcg tccaggcgcg
     1261 cactcaaggc gggcagggat agtctaggtg cgcttctctg tgacgggtca taactccacg
     1321 tagggccaat aatacgattt tggcggtggg cgcgcaatgc tggggtattt cgcaactgca
     1381 aacccgggcc gcccccgctt ctgtggacag tggactttcc cgcattgcac gccgcgcacg
     1441 acttgccatg cttaaccttg agttgaagga gccgccgcat gaccgcgcgc ctggaagtga
     1501 tcgtggggcc gatgttctcc ggcaaaaccg agcggctgat cgcccgcctg caccgcgccc
     1561 aatatgccag gaagcgggtg cgtatcttga agcccgcgca tgacacccgc acccagggtt
     1621 ccatcgcttc gcgcgcggta tcggccgatg ggacgaccga ggtgacggcg accctgtcgg
     1681 ccatcatggt gcgcagcgcc gccgacttcg cccgcgccat cgccgacgac gcttacgacg
     1741 tgctggcggt ggacgaagcc cagttcttcc cgctggacga accgatgacg gatgcgctgg
     1801 gctggttcgg ccgcgccatc cgcgatctgc tgcgccagaa ggccaaaagc gatctgcgca
     1861 ttatcgtggc cgggctggac atggatttcg ccgaggcgcc gttcgggccg atgccgggcc
     1921 tgctggcgat ggccgatacg gtggagaagc tgaccggcgt ctgcatggtc tgcggttccg
     1981 acggcggcta catctcccac cgcgtcattc cgggcgatgc ccagctggtg gtgggcgatg
     2041 ccggcgaata ccaagtgcgc tgccgggcct gctacgagcc gccgggtatc aagggcgctg
     2101 tgccggaccg caaggccgcg ggcgggtagg tctcttcctt cttccctctc cccttgaggg
     2161 gtccgaagga cgggcgcgcg gccaagcgcg cccagtggag gaagaaaaat cattgggtta
     2221 gcggcgcgca gcggcgctca acccattgat ttttcaggtg aggggtgagt ttgcgccgca
     2281 cccctcacct agcaaaatct aagcacttag ctccgcatgc gctgcgctaa gtgcaagatt
     2341 ttgtgtcctc tccctcaagg ggagagggaa gaatgagtag atccagtgac aagcggcact
     2401 ggcgtgagga ccgtatagtt gcctcaacgg tgtgtgataa ggtcttgaag atgaaagtta
     2461 caatctacca caacccacaa tgttccaact cgcgcaaggc gctggaaatt atccgcgaga
     2521 aaggcataga gccgaagatt gtcgaatatc tgaaaacacc cctaccgccg aacgcactgc
     2581 gcgccttgat caagaagctg catgtgccgg tgcgcgatgc gatgcgcacc caggagcccg
     2641 cctatgcgca gatgaagctg gacggcgccg atgacgatac cctgctggcg gccatcgcgg
     2701 cgcaccctat cctgctgaac cggccgattg tcgtgacgga caagggggcg aagctgtgcc
     2761 ggccggggga ggaagtggcg gggctgcttt aggtgacata cccataaagg ggattcccaa
     2821 gttttgcgaa cagtgattca aatc
//
LOCUS       DATMDK010000143         5162 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_982903,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000143 DATMDK010000000
VERSION     DATMDK010000143.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 5162)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5162)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5162
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_982903"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..513)
                     /locus_tag="VNN98_02800"
     CDS             complement(<1..513)
                     /locus_tag="VNN98_02800"
                     /inference="COORDINATES: protein motif:HMM:NF012398.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HWM61048.1"
                     /translation="MSGLKESYPYYLANEAKSPNQDLEVIDKYTGKVATRVALADAAA
                     IDAGIAACVEAAEPMARMAAYERQDVLAHCVTRFQERFEELAFALCIEAGKPIKDSRG
                     EVSRLIDTFRIAAEESVRILGEVQPLDIAPRAKGYLGIWKRVPIGPCSFVSPFNFPLN
                     LAAHKIAPALA"
     gene            complement(518..2164)
                     /locus_tag="VNN98_02805"
     CDS             complement(518..2164)
                     /locus_tag="VNN98_02805"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: protein motif:HMM:NF006187.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0030976 - thiamine pyrophosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase large subunit"
                     /protein_id="HWM61049.1"
                     /translation="MTKASDLFIACLEEEGVEYVFGVPGEENLDFLDSLSRSTKIKLI
                     LTRHEQGAGFMAATYGRHTGKAGVSLATLGPGATNLVTAGAYAQLGGMPMMMITGQKP
                     IKSSKQGRFQILDIVDMMRPLTKFTHQMASADNIPSRVREAIRLAQEEKPGAVHIEFP
                     EDIADEQTDATPLKASFIRRPVPDEKSIRAAVARIERAKSPLLVIGAGANRAMTSRML
                     TQLVEKTGIPFVTTQLGKGVIDERNPKFVGCAALSSGDFVHAAVAAADVIVNVGHDVI
                     EKPPFFMRTGGTEVIHVSFRSAEVDPVYFPQIEVVGDIANAIWQIKEHMLPQPTWDFT
                     KMLKARAAEVEHAATLSGDQRCPIYPPYLVEQIRTLMPSNGIICLDNGVYKIWFARNY
                     RAHMPNTVLLDNALATMGAGLPSAMASAMVYPDRKVMAICGDGGFMMNSQEMETAVRL
                     KLNITVLILNDNSYGMIRWKQANMGFKDWGLTYGNPDFVKYAEAYGAKGHKVTSAKQL
                     PELLKSCLDTPGVHLVDCPIDYSDNDRILNKEIRKLSAAV"
     gene            complement(2230..3588)
                     /gene="gdhA"
                     /locus_tag="VNN98_02810"
     CDS             complement(2230..3588)
                     /gene="gdhA"
                     /locus_tag="VNN98_02810"
                     /EC_number="1.4.1.4"
                     /inference="COORDINATES: protein motif:HMM:NF006929.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016639 - oxidoreductase activity, acting
                     on the CH-NH2 group of donors, NAD or NADP as acceptor
                     [Evidence IEA];
                     GO_process: GO:0006520 - amino acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-specific glutamate dehydrogenase"
                     /protein_id="HWM61050.1"
                     /translation="MANEHVDLERFVHGVERRNPGQPEFVQAVHEVASDIFDFIQGKT
                     AYHEYQILRRIAEPDRIISFRVCWEDDKGNIRVQRGWRVQNNNAIGPYKGGIRFHPSV
                     TESVLKFLAFEQTFKNSLTGLPMGGGKGGANFNPKGKSDHEVMRFCQSFMTELYRHVG
                     ADIDVPAGDIGVGGREIGYMFGQYKRITNQFTGVLTGKGLEYGGSLIRTEATGYGAVY
                     FLQNMLKNQGNEVKGKTAVISGSGNVATHAAEKIVQLGGKVLTLSDSEGFIHDPDGIS
                     QEKIDWVKVLKTKRRGRMSEYVKEFKGATFTGGGARPWGVKCDVALPCATQNELNGAD
                     AATLVKNGCIAVSEGANMPTDLAGVKVFKDAKILYAPGKAANAGGVAVSGLEMSQNSG
                     RRAWKEDELQALLLDIMANIHARCLEYGKTGEGKYVDYTKGANIAGFKKVADAMLAYG
                     VV"
     gene            3984..>5162
                     /locus_tag="VNN98_02815"
     CDS             3984..>5162
                     /locus_tag="VNN98_02815"
                     /inference="COORDINATES: protein motif:HMM:NF042664.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat-containing protein"
                     /protein_id="HWM61051.1"
                     /translation="MAELSSSPALRIAALGHRVISPKTRDAVAQAAARILASVRENAL
                     HPEGRDLVVISPLAQGADQIIAGAGLALGYQLQAILPGPQADYEKTFDLGEAEEEIAI
                     FRDFLDHARHGHGAEELNGDLRAADSRNRAFLHCADVMIRKSDMVLAILSADRWGSHT
                     GQSARDAIALGLPLLVIDPAMPGPPLLYRKDGVTAASDAAIAETVRELIDRRFPDDLA
                     RAKGALAAGDFLTAIDLLRHAPDAPEIQPRIERDYLLVLALARAGAAKLGLERFRERL
                     AGVSLDALPAEMACDIAALQARCLKDLALETPAPARRDVLIEAADAYEAVYRRFGGYY
                     PLINAATLFLLAGQRATAEGLARQTLQEVAENQDYWALATKAEALLVLGQQAGAVLEA
                     A"
BASE COUNT          886 a         1567 c         1658 g         1051 t
ORIGIN      
        1 tgccaaagcc ggcgcaattt tgtgcgccgc caggttgagc gggaagttga aaggcgagac
       61 gaaggagcaa ggcccgatcg gcacccgctt ccagattccc agatacccct tggcgcgcgg
      121 cgcgatgtcc agcggctgga cttcgcccag aatgcgcacc gattcttctg ccgcgatgcg
      181 gaaggtgtcg atcagccggc tgacttcgcc gcggctatcc ttgatcggct tgcccgcctc
      241 gatacacagg gcaaaggcca gttcctcgaa ccgctcctgg aagcgcgtga cgcaatgggc
      301 cagtacgtcc tggcgctcat aagccgccat ccgcgccatc ggttcggctg cttcgacgca
      361 ggcagcgatg ccggcgtcga tcgccgccgc gtcggccagc gccacccggg tcgctacttt
      421 cccggtatat ttgtcgatga cctccaaatc ctggttgggg gatttggctt cattcgccag
      481 ataataggga taggactctt tcaaccctga catggtctca aaccgccgcg ctgagtttgc
      541 ggatttcctt gttcaggatc cggtcattgt cggaatagtc gatcgggcaa tccaccagat
      601 gcacgcccgg cgtgtccagg caggacttca gcagttcggg cagctgtttg gcgctggtga
      661 ccttgtggcc cttggcgccg taagcctcgg catatttgac gaagtcggga ttgccatagg
      721 tcaggcccca atccttgaag cccatattgg cctgcttcca gcggatcatg ccgtagctgt
      781 tgtcgttgag gatcagcacg gtgatgttga gcttcagccg caccgcggtt tccatttcct
      841 ggctgttcat catgaagccg ccatcgccgc agatcgccat cactttgcgg tcgggataga
      901 ccatcgccga ggccatggcc gagggcaggc cggcgcccat ggtggccagc gcattgtcca
      961 agagcacggt gttgggcata tgggcgcggt aattgcgcgc gaaccagatt ttatagacgc
     1021 cattgtccaa acatataatg ccgttggacg gcatcagggt gcgaatctgc tccaccaggt
     1081 aaggcggata gatcgggcaa cgctggtcac ccgacagggt ggcggcatgc tccacttcag
     1141 cggcgcgggc cttgagcatc ttggtgaagt cccaggtcgg ctgcggcagc atgtgttcct
     1201 tgatctgcca gatggcattg gcgatgtcgc caaccacttc gatctgcggg aaatagaccg
     1261 ggtccacttc cgccgagcgg aagctgacat ggatgacctc ggtgccgccg gtgcgcatga
     1321 agaagggcgg cttttcgatc acgtcatggc cgacattgac gatcacatcg gcggcggcca
     1381 ccgcggcatg cacaaagtcg cccgacgaca gagcggcgca gcccacgaat ttgggattgc
     1441 gctcgtcgat cacgcccttg cccagctggg tggtgacaaa gggaatcccg gtcttttcca
     1501 ccaattgggt cagcatgcgg ctggtcatgg cacggttggc gcccgccccg atcaccagca
     1561 gcggcgactt ggcgcgttcg atccgggcca cggcggcgcg gatcgacttt tcgtcgggga
     1621 ccgggcggcg gatgaagctg gccttgagcg gggtggcatc ggtctgttcg tcggcgatgt
     1681 cctcggggaa ctcgatatgc accgcgccgg gcttttcttc ctgcgccagg cgaatggctt
     1741 cgcgcacccg cgaggggata ttgtcggccg aggccatctg atgggtgaac ttggtgagcg
     1801 ggcgcatcat gtccacgatg tccagaatct ggaagcggcc ctgcttggaa cttttgatcg
     1861 gcttctggcc ggtgatcatc atcatcggca tgccgcccag ctgggcatag gcgccggcgg
     1921 tcaccagatt ggtggcgcct ggtcccaaag tggccaagct aacgccggcc ttgccggtgt
     1981 gacggccata ggtcgcggcc atgaagccgg cgccctgttc gtgacgggtc aggatcagct
     2041 tgattttggt ggatcgcgac aggctgtcga ggaaatccag attttcctcg ccgggaacac
     2101 cgaagacata ttccacgcct tcctcttcca gacacgcgat gaacagatca gaagccttgg
     2161 tcatggagtc ctcgttgtac attggaagag aaaagcaggc cggacgtagc gcccggcctg
     2221 accgaataat cagacgacgc cgtaggccag catggcgtcg gccactttct tgaagccggc
     2281 aatgttggcg cccttggtat agtcaacata cttgccttcg ccggtcttgc catattccag
     2341 gcagcgggca tggatgttgg ccatgatgtc cagcagcagc gcctgcagtt cgtcttcctt
     2401 ccaggcgcgg cggccggaat tctgactcat ctccaggcct gacacggcga cgccgccggc
     2461 attggcggcc ttgccgggcg cgtaaaggat cttggcatcc ttgaagacct tcaccccggc
     2521 caggtcggtc ggcatgttgg cgccttccga caccgcgatg cagccgttct tcaccaaggt
     2581 cgcggcatcg gcgccgttca gctcgttctg ggtggcgcag ggcagtgcga catcgcattt
     2641 cacgccccag ggccgcgccc cgccgccggt gaaggtggcg cccttgaact ccttcacata
     2701 ctccgacatg cggccgcggc gcttggtctt gagcactttc acccagtcga tcttttcctg
     2761 gctgatgccg tcgggatcgt ggatgaagcc ttcggaatcc gacaaggtca gcaccttgcc
     2821 gcccagctgc acgatcttct cggcggcgtg ggtggcgaca ttgcccgagc cggagatcac
     2881 cgccgtcttg cctttcactt cgttgccttg gttcttcagc atattctgca ggaagtagac
     2941 cgcgccatag ccggtggctt cggtgcggat caggctgccg ccatattcca ggcccttgcc
     3001 ggtgagtacg ccggtgaact ggttggtgat gcgtttgtat tggccgaaca tgtagccgat
     3061 ctcgcgcccg cccacgccga tgtcgccggc cggcacgtcg atgtcggcgc cgacatggcg
     3121 gtacagttcg gtcatgaagg attggcagaa gcgcatcact tcgtgatcgg acttgccctt
     3181 ggggttgaaa ttggcgccgc ccttgccgcc gcccatgggc aggccggtca ggctgttctt
     3241 gaaggtctgc tcgaaggcca ggaacttcag cacgctttcg gtgacggagg gatggaaacg
     3301 gatgccgccc ttgtaggggc cgatcgcatt gttgttctgc acccgccagc cgcgctgcac
     3361 ccggatgttg cccttgtcgt cttcccagca gacacggaag gagatgatcc ggtcgggctc
     3421 ggcgatacgg cgcaggatct ggtattcgtg ataggccgtc ttgccctgaa tgaagtcgaa
     3481 aatgtcggag gcgacttcat gcaccgcctg gacgaattcg ggctggccgg gattgcggcg
     3541 ctcgacacca tggacgaagc gctccagatc gacatgctcg ttggccattt gttgtttcct
     3601 cgctggttat attggcaggt tcaattcggg aagggccgcg cgtttgccgg cgcgtcatgg
     3661 gcggattggg gtacggttgc ggtcgggcaa tggatcattg ccgcgggcat acgacagaaa
     3721 tatctgtgtc atcgcatgca cgccccggtc aggcttttct ggcgagatgg tgctcgagaa
     3781 cctgtgtgcc agggagctcc ccaaaacccc gaaagagtaa atcccgcggc cctgggagag
     3841 tcaacgaaag ggccggaaaa acggggattc cgcttggttt tttgagccct gcaacgtcaa
     3901 ggacttgtga cagggctggg cacggtcata gggttgccgc atgccttgca ccgcatgtgt
     3961 gctgcagggg ctgggaggtt ttgttggccg agctttcatc ctcccccgcc ctgcgtatcg
     4021 ccgcccttgg ccatcgcgtt atctctccca agacgcgtga cgcggtcgcc caagcggcgg
     4081 cgcgcattct cgcctcagtc cgtgaaaacg cgctgcatcc ggaagggcgg gatctggtgg
     4141 tgatatcgcc cctggcccag ggcgctgatc agatcattgc cggggcgggg ctggcattgg
     4201 gctaccagct gcaggccatc ctgcccggtc cgcaggccga ttatgaaaag actttcgacc
     4261 tgggcgaggc ggaagaggaa atcgccattt ttcgggactt tctggatcat gcacgccatg
     4321 gccatggcgc cgaagaactg aatggcgatt tgcgcgctgc ggattcccgc aaccgcgcct
     4381 tcctgcattg cgccgatgtg atgatccgca aaagcgacat ggtgctggct atcctgtccg
     4441 ccgaccgttg ggggtcccac accggacaaa gcgcgcgcga cgccatcgcc ctgggcctgc
     4501 cgctgctggt gatcgacccc gccatgccag gccctccgtt gctgtaccgc aaggacggtg
     4561 taacggccgc cagcgatgcg gccatcgccg agaccgtccg tgaattgatc gaccgccgct
     4621 ttcccgatga tctggcccgc gccaagggcg ccctggcggc cggcgatttt ctcaccgcca
     4681 tcgatctgct gcggcatgcg ccggacgcgc cggagattca gccccgcatc gaacgcgatt
     4741 atctgctggt gctggcgctg gcgcgggcgg gcgccgccaa gctgggattg gagcgtttcc
     4801 gcgaacggct ggcaggcgtt tccctggacg cacttcccgc cgagatggcg tgtgacatag
     4861 cggcgctgca agcgcgctgc ctgaaagacc tggcgctgga aacgcctgca cctgcgcgcc
     4921 gcgatgtctt gatcgaagcc gcggacgcct atgaggcggt ctatcgccgc ttcggcggct
     4981 actatccttt gatcaacgcc gcgaccttgt tcctgttggc gggccagcgg gccaccgcgg
     5041 aaggcctggc gcggcagact ttgcaggaag tggcggaaaa tcaggactat tgggcgctgg
     5101 cgaccaaggc cgaagcgttg ctggtgctgg gccaacaggc cggcgcggtg ttggaggccg
     5161 cc
//
LOCUS       DATMDK010000144         2043 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_3038347,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000144 DATMDK010000000
VERSION     DATMDK010000144.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2043)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2043)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2043
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3038347"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..184)
                     /locus_tag="VNN98_02820"
     CDS             complement(<1..184)
                     /locus_tag="VNN98_02820"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61052.1"
                     /translation="MSKIYARPLVMATLAITLAMGTAGCQTIADLDPTGLLGDDTPAP
                     DSSFPTDSSQQAAADAN"
     gene            441..>2043
                     /gene="phaC"
                     /locus_tag="VNN98_02825"
     CDS             441..>2043
                     /gene="phaC"
                     /locus_tag="VNN98_02825"
                     /inference="COORDINATES: protein motif:HMM:TIGR01838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0042619 - poly-hydroxybutyrate biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I poly(R)-hydroxyalkanoic acid synthase"
                     /protein_id="HWM61053.1"
                     /translation="MPSSSPAAPASPESAPPPDTLDTREFARNMLTVGVKSQQLMLDF
                     IARMAARENPGPLDPLNISGAMLALAKAMGGDRDAVIEAQTQWWNNFMTLWESTARRM
                     LGGEAPAVVEPAPGDRRFKADAWKQNEVFDFIKQSYLLTANAMQEMVGKLHGLDEKER
                     GRVAFYTRQFADAFAPTNFPLTNPDVLKATLASNGENLVKGLDNLLADIERGHGELSI
                     RQSADGFVIGENVATAPGKVVFRNEIMELLQYSPATDEVYERPLLIFPPWINKYYILD
                     LRPENSFVRWLVGQGYTVFLVSWVNPDADMAGKDFEDYMQGGIFAALEAVEKATGVAD
                     PNCVGYCIGGTLLAATLAYMAAQAGDKGDNERIHSATFWAAQTDFSEAGELSVFVDEA
                     QLDALKQKMDSEGGVLPGSKMAGAFNMLRANDLIWSFVINNYLLGKQPMPFDLLYWNS
                     DTTRMPEKLHLSYLRNCYKENALARGKMELAGVKLNLSKVKLPVYLQSAREDHIAPAA
                     SVFKSVNLFGGPARFILAGSGHIAGV"
BASE COUNT          385 a          648 c          636 g          374 t
ORIGIN      
        1 tgttggcgtc ggcggcagcc tgctgggaac tgtcagtggg aaaggaactg tcgggcgcgg
       61 gcgtatcgtc gcccagcagg ccggtgggat cgaggtcggc aatggtctgg caaccggcag
      121 tgcccattgc cagagtgatc gccagcgtcg ccatcaccaa aggacgcgcg taaatcttgc
      181 tcatgcccaa ctgcctttat tacccagcat tgcccagtgc caaattccaa atactggccc
      241 ccggccttcg cgctcctgcg agcgcggcgc caatccagcc cttccgatat accgcgcgcg
      301 cggcgtttgc gccagcgaaa gagcgggtag atcactagaa tgcttgcgtt atttgggcgc
      361 gatacgcccg ctttccgcgc cgcttgcagc tgtcactatg gccgggctat cacagttttc
      421 acaaaggcga tcctgacgcg atgccctcca gtagtcctgc cgcccccgcc tcacccgaat
      481 cggcgccgcc gcccgatacg ctcgatacca gggaattcgc gcgcaacatg ctgacggtgg
      541 gggtgaagag ccagcagctg atgctggact tcatcgcccg catggcggcc agggaaaatc
      601 ccggtccgct cgatccgctc aacatctcgg gcgccatgtt ggcgctggcc aaggcgatgg
      661 gcggcgaccg cgatgcggtg atcgaagccc agacccagtg gtggaacaat ttcatgaccc
      721 tgtgggaatc caccgcgcgg cgcatgctgg gcggcgaggc ccccgccgtg gtggaacccg
      781 cgcccggtga ccgccgcttc aaggcggacg cctggaagca gaacgaggtg ttcgatttca
      841 tcaagcagag ctatctgctc accgccaatg ccatgcagga aatggtgggc aagctgcacg
      901 gactggacga gaaagagcgc ggccgggtcg ccttttacac ccgccagttc gccgacgcct
      961 tcgcccccac caacttcccc ctcaccaacc cggacgtgct gaaggccacc ctcgcctcca
     1021 atggcgagaa tctggtcaag gggttggaca atctgctggc cgatatcgag cggggtcatg
     1081 gcgagctgtc catccgccaa tcggccgatg gttttgtcat cggcgagaat gttgccaccg
     1141 cccccggcaa ggtggtattc cgcaatgaga tcatggagtt gctgcaatac tctccagcga
     1201 cagatgaggt atatgagcgg ccgctgctga tcttcccgcc ttggatcaac aagtattaca
     1261 tcctggatct gcgccccgag aacagcttcg tgcgctggct ggtgggccag ggctacaccg
     1321 tcttcctggt ctcctgggtg aaccccgatg ccgacatggc cggcaaggat ttcgaggatt
     1381 acatgcaagg cggcatcttc gccgccctgg aggcggtgga gaaggctacc ggcgtcgcgg
     1441 accccaactg tgtgggctat tgcatcggcg gcaccctgtt ggccgccacc ctcgcctaca
     1501 tggccgccca agcgggcgat aagggcgaca atgagcgcat ccattccgcc actttctggg
     1561 ccgcccagac cgacttcagc gaggcgggcg aattgtcggt gttcgtggac gaggcccagc
     1621 tggacgcctt gaagcagaag atggacagcg aaggcggggt gctgcccggc tccaagatgg
     1681 cgggtgcctt caacatgctg cgtgccaacg acctgatctg gtccttcgtg attaacaact
     1741 acctgctggg caagcagccc atgccgttcg acctgctgta ctggaacagc gacaccacgc
     1801 ggatgccgga gaagctgcat ctgtcgtatc tgcgcaattg ctacaaggag aacgctctgg
     1861 cgcgcggcaa gatggaactg gcgggcgtga agctgaacct gtccaaagtc aagctgccgg
     1921 tctatctgca atcggcgcgc gaggatcaca tcgcgccggc ggcctcggtg ttcaagtcgg
     1981 tcaacttgtt cggcggcccg gcgcgcttca tcctcgccgg cagcggccat atcgctggcg
     2041 tga
//
LOCUS       DATMDK010000145         3464 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2582717,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000145 DATMDK010000000
VERSION     DATMDK010000145.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3464)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3464)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3464
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2582717"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            132..476
                     /locus_tag="VNN98_02830"
     CDS             132..476
                     /locus_tag="VNN98_02830"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61054.1"
                     /translation="MADTPVDLSHLARYTGGDRTLNAEILRLFDGQVSAMVGQLLGVL
                     EQRDARRWREVTHTIKGAARGVGAFAMGAAAADAEPVDPAANPDRAIEVIEALRVQGD
                     AVQAFIAEYLAA"
     gene            901..1974
                     /locus_tag="VNN98_02835"
     CDS             901..1974
                     /locus_tag="VNN98_02835"
                     /inference="COORDINATES: protein motif:HMM:NF019604.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HWM61055.1"
                     /translation="MSAAPIEPQPANGGPIETDVAIIGAGPIGLFAVFELGLLDLKCQ
                     LIDILDRAGGQCTELYPEKPIYDIPGLPIVTGQELVNRLLEQIRPFDPQFHFGEMATA
                     LEKLSDGRWKLTTDAGTQIIASVVVVAAGAGSFQPKRPPVPGIESFENAGDGVGVHYA
                     VRKMETFRGKNILIAGGGDSALDWVINLAPLAKSMTLVHHRDGFRAAQHSVNQMRELE
                     KDGKVKFHVASVKAMHGQPGKLTGVTLAGHDKSEWQQDADVFLPFFGLTIKLGPIAEF
                     GINLHENLIPVDTARFESQTPGIFAIGDINSYTGKLKLILSGFHEAALMAQAAFHVCR
                     PNEKLRFQYTTSSSNLQKKLGVS"
     gene            1971..2279
                     /locus_tag="VNN98_02840"
     CDS             1971..2279
                     /locus_tag="VNN98_02840"
                     /inference="COORDINATES: protein motif:HMM:NF012339.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2Fe-2S iron-sulfur cluster-binding protein"
                     /protein_id="HWM61056.1"
                     /translation="MKIHAIDRQGKEHTLEGRDGWSVMEILRDGGLDIAAECGGACAC
                     ATCHVYINDGWFEKLPAPSEAEIDMLDMALAVEPNSRLSCQVICSDTTDGIKVTVAPE
                     "
     gene            complement(2305..>3464)
                     /locus_tag="VNN98_02845"
     CDS             complement(2305..>3464)
                     /locus_tag="VNN98_02845"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61057.1"
                     /translation="MGLLARNRMTAFCWRQWRIVQFIEKGPRFIEKVRRPLMRICRGF
                     SRRACQCKMREASIGQRCSKNCQLLSILEPIAMGMKRFTVLLASLASAWVLASGASAQ
                     EAPRPQSAAVENVIVTAPKLRSEKALDNFIIAHAAPSPFLRKIARWKTGICPVTIGLP
                     DKFNLFVTQRIIRVAMAAGAPLDSHEPCRPNVAVLATPEPQKLLDFIRQKRVALLGFH
                     YRPQAMRLATMTLPVQAWYSTATEDFWGLIEADLPSGDLGYGVMSTRGIIRGAHVSGS
                     RLGDGLKSEFTTAVIVVDTTKIAGQEIGALADYFAMLALSQASSYDTCQDVPTITNLM
                     AAGCGADMKPVAMTDVDMTYLRGLYRMDAGGSFMAERGSIAYEMKKDLGGY"
BASE COUNT          687 a         1111 c         1042 g          624 t
ORIGIN      
        1 tgccctaccc cttgcatttt aagcattatt tccacgaact ggcgagggtt tcacacacaa
       61 aaggccggta ttaacgcggc cttagccgag ccgggcacag gatagctgcg ccttattctt
      121 cggataccgc catggccgat acgcccgtcg atctctccca tctcgcccgc tacaccggcg
      181 gcgacaggac cttgaacgcc gagattctgc ggctgttcga tggccaggtc agcgcgatgg
      241 tgggccaatt gctgggcgtg ctggaacaac gcgacgcgcg ccgctggcgc gaggttaccc
      301 acaccatcaa gggcgcggcg cgcggcgtcg gcgcctttgc catgggcgcg gcggcggccg
      361 atgccgaacc ggtcgatccc gctgctaatc ccgaccgcgc catcgaggtc atcgaggcgc
      421 tgcgcgtcca gggcgacgcg gtgcaggcct ttatcgccga gtacctggcg gcttaattta
      481 gttaccccca tccgtcgcag ctcaggtcgg ctccgccgac acttcgctgc gccgttcggc
      541 catcttggcc gatggcctca ctcccccttc ctgtgcttcg cacgaagggg gaaggaagct
      601 ggcggatgct gaggggtgag gagcggttcg ccaacggcga acgaaatgct ccaatggacc
      661 atttcgagcg acgaacgccg cgagcccaag cgagcggccg gactgcgccg cgatatgcgg
      721 cgctcgagcc tcagcttcta gtcattcccg caaaagcggc gcaccgccgg cagcggcatt
      781 ttgcatcgca gcgctgctgc gggcgggggt tgttggcttg gccgttttca cactataagg
      841 acgacgtttt cccagccaat acatgaagtt aagtgtgaaa taccccgcaa ggattaagtg
      901 atgagtgctg cgcccatcga accccagccc gccaacggcg ggccaatcga aacagacgtt
      961 gccattatcg gcgcggggcc catcggcctg ttcgccgtgt tcgagctggg cctgctcgat
     1021 ctcaaatgcc aactgatcga cattctggac cgcgccggcg gccaatgcac cgagctgtat
     1081 ccggaaaagc cgatctacga cattcccggc ctgcccatcg tcaccggtca ggaactggtc
     1141 aaccggctgc tggagcagat caggcctttc gatccgcaat ttcatttcgg cgagatggcc
     1201 accgctctgg aaaaactcag cgacggccgc tggaaactga ccaccgatgc gggcacccag
     1261 atcatcgcct ccgtggtggt ggtggcggcg ggcgccggtt cctttcagcc caagcgccct
     1321 ccggtgccgg gcatcgagag ttttgaaaat gccggcgacg gcgtgggcgt gcattacgcc
     1381 gtgcgcaaga tggaaacctt ccgcggcaaa aacatcttga tcgccggcgg cggcgattcc
     1441 gctctcgact gggtcatcaa cctggcgccg ctggccaagt ccatgaccct ggtgcatcac
     1501 cgcgacggct tccgcgccgc acagcacagc gtcaatcaga tgcgcgagct ggagaaggac
     1561 ggcaaagtca aattccatgt cgccagcgtc aaggcgatgc atggccagcc cggcaagctg
     1621 accggcgtca ccctggccgg tcatgacaag agcgaatggc aacaggatgc cgacgtcttc
     1681 ctgcccttct tcggtctgac catcaagctg gggcccattg cggagttcgg catcaacctg
     1741 cacgaaaacc tgatcccggt ggacaccgct cgcttcgaaa gccagacccc cggcattttc
     1801 gccatcggcg acatcaacag ctataccggc aagctgaagc tgatattgtc cggcttccat
     1861 gaagcagccc tgatggccca ggcggccttc catgtctgcc gcccgaacga aaagctgcgc
     1921 ttccagtaca cgacctcgtc ttcgaacctg caaaagaaat tgggtgtctc gtgaagatcc
     1981 acgccatcga ccgccagggc aaggaacaca cgctggaggg ccgcgacggc tggagcgtga
     2041 tggaaatcct gcgcgacggc gggctggaca tcgcggcgga atgcggcggc gcctgcgcct
     2101 gcgccacctg tcacgtctat atcaatgacg gctggttcga gaagctgccg gcgccatcgg
     2161 aagccgagat cgacatgctg gacatggccc tggcggtgga acccaattcg cgcctgtcct
     2221 gccaagtgat ctgtagcgac acgaccgacg gcatcaaggt cacggttgct cctgaatagg
     2281 ggcgcaccgg agtagtgcgc tgcgctaata cccgcccagg tccttcttca tttcgtaggc
     2341 gatagagccg cgctccgcca taaacgaacc gcccgcatcc atcctgtaaa gaccgcgcag
     2401 ataggtcata tcgacatcgg tcatcgccac cggcttcatg tcggcgccgc aacccgccgc
     2461 catcaggttg gtgatggtcg gcacgtcctg acaagtgtcg taggaactgg cctgggacag
     2521 tgccagcatg gcgaaatagt cggccagtgc gccgatctcc tggccggcga tcttggtcgt
     2581 gtccacgacg atgacggcgg tggtgaactc gctcttcagc ccgtccccga gccgcgatcc
     2641 gctgacatgc gccccgcgga ttatgccgcg cgtgctcatc acgccatagc cgagatcccc
     2701 gcttggcagg tcagcctcaa tcaaacccca gaagtcctcg gtggcggtgc tgtaccaggc
     2761 ctgaaccgga agggtcatgg tggcgagacg catcgcttgc gggcgataat gaaagcccag
     2821 cagggccaca cgcttctggc ggatgaaatc caacagcttc tgcggctcag gcgtggccag
     2881 gaccgcgacg ttgggccggc atggctcatg tgaatccagc ggcgcgccgg ccgccattgc
     2941 cacccggata atgcgctggg tgacgaacaa attgaattta tccggcagtc cgatggtcac
     3001 cggacagatg cccgtcttcc agcgcgcgat cttgcgcaga aaaggcgaag gcgcggcgtg
     3061 ggcaatgatg aaattgtcga gcgctttttc ggaccgcagt ttcggcgcgg tcacgatcac
     3121 attttcgacc gcagcacttt gcggccgagg cgcctcttgt gccgaagcgc cggaggcaag
     3181 aacccatgcc gacgccaggc tggccagcag aacggtgaac cgcttcattc ccatcgctat
     3241 aggctccaag attgaaagca actgacaatt tttactgcag cgctgtccga tacttgcttc
     3301 gcgcatctta cactggcaag cccggcggga aaatccccgg cagatgcgca tgagcgggcg
     3361 gcggaccttc tcgataaacc gcggaccctt ctcgataaac tgcacaattc gccattgccg
     3421 ccagcaaaaa gcggtcatac ggttccgggc gaggagaccc atcc
//
LOCUS       DATMDK010000146         2670 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2809219,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000146 DATMDK010000000
VERSION     DATMDK010000146.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2670)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2670)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2670
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2809219"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..704)
                     /locus_tag="VNN98_02850"
     CDS             complement(<1..704)
                     /locus_tag="VNN98_02850"
                     /EC_number="4.2.1.8"
                     /inference="COORDINATES: protein motif:HMM:NF015727.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008927 - mannonate dehydratase activity
                     [Evidence IEA];
                     GO_process: GO:0006064 - glucuronate catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="mannonate dehydratase"
                     /protein_id="HWM61058.1"
                     /translation="MDRRKFFSVTSAGAAAVAAGSIAGADAAPKSKMAGGSCASAKLL
                     PLKARLGHQFGTLTERSAAWVSRYGVDAVCTNPKVADPTRLYPNVDEMKAMLDIADKH
                     KIKVELVDSVLLTSSLIDREKNPAIMLGQSPQRDRDIEAFQNHIRTCAATGIRTLKYN
                     MSILGVVRLDEVPGRGDTVYNRWNYEEAAAKNPPLTRAGEVGDDAFWERINYFLERVV
                     PVAAENKVRIACHPQDP"
     gene            complement(723..1475)
                     /locus_tag="VNN98_02855"
     CDS             complement(723..1475)
                     /locus_tag="VNN98_02855"
                     /inference="COORDINATES: protein motif:HMM:NF024921.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HWM61059.1"
                     /translation="MYRIIVPASLLLLAGAAQARDLKILTGAGMSMPVRALAADFGFR
                     TGDTVTVVSDTAGGVQKHMEAGEKFDLVIGTTTVLDSLARENKVLAAHADLAQMVAGI
                     SAKAGTAKPAIADGGQVKTTLLAAKNIAYVDPASGGITGVFFLQQADKLGIGGPVRAK
                     AVLKPDGTGVAAAVAGGEAQYGVTLISEMLPNRGVTVWPLPDDIQMTTIYTAAIATNA
                     ENALDAGALLNDLRGRKGRDACIKAGLKPVAN"
     gene            1573..2061
                     /locus_tag="VNN98_02860"
     CDS             1573..2061
                     /locus_tag="VNN98_02860"
                     /inference="COORDINATES: protein motif:HMM:NF022072.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC family protein"
                     /protein_id="HWM61060.1"
                     /translation="MKKVFLASAAIAMAMLISVPAGAAEYATILLDKVVNRTPDQTWA
                     KIGPYCSIATWLKVTCVITAGNGVSVGSNRLLNGNNNEIMVAATPYSYSYTQPATTIL
                     YHGTLAVEPLDRGRQTKIVYTLFYDQAPLGTDQAKAENRAMRTKRFSEALDAMKAMAE
                     SP"
     gene            2061..>2670
                     /locus_tag="VNN98_02865"
     CDS             2061..>2670
                     /locus_tag="VNN98_02865"
                     /inference="COORDINATES: protein motif:HMM:NF012607.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HWM61061.1"
                     /translation="MIDVLQLVPLRPEVQKELAARYRLHGKADFDKVADIVRACVTNG
                     HSGPPPEMIDRMPKLEIIASASVGYDGIPVEYARSKGIPVTNTPEVLNDDVADLAIAL
                     MIMTARRLVASDTYVRSGKWPSGWEYPLSQKASGKRVGILGMGRIGKEIAKRAEAMNN
                     TIAYHSRRPVADVSYKHYPDLVELARNSDFLVVIIPSTPQTHK"
BASE COUNT          479 a          833 c          855 g          503 t
ORIGIN      
        1 ggatcctggg gatggcaggc gatgcggacc ttgttttcgg cggccaccgg caccacccgt
       61 tccaggaaat agttgatgcg ctcccagaag gcatcgtcgc ccacttcccc ggcgcgggtc
      121 agcggcgggt tcttggcggc ggcctcttca tagttccagc ggttgtagac ggtgtcgccg
      181 cggcccggca cttcgtccag ccgcaccacg cccaggatgc tcatattgta tttcagggtg
      241 cggatgccgg tggcggcgca ggtgcggata tgattctgga aggcctcgat gtcgcggtcg
      301 cgctgcgggc tctggcccaa catgatggcg ggattctttt cccggtctat cagcgaggac
      361 gtcagcagca cgctgtccac cagctcaacc ttgatcttgt gcttgtcggc gatgtccaac
      421 atcgccttca tctcgtccac attgggatag aggcgggtgg gatcggcgac cttggggttg
      481 gtgcagacgg catccacacc gtagcgcgac acccaggcgg cggagcgctc agtcagggtg
      541 ccgaactggt ggcccagccg ggctttcagc ggcagcagct tggcgctggc gcaagacccg
      601 cccgccatct tggatttcgg cgcggcgtcg gcaccggcaa tgctgccggc ggcaacagcg
      661 gcggcgcctg cactggtgac ggaaaagaat ttgcggcggt ccatgaacgt ctccttgttg
      721 atctagttgg caaccggttt caggccggct ttgatacagg catcgcggcc cttgcggccg
      781 cgaaggtcat tcagcagggc gccggcgtcc agtgcatttt cggcattggt ggcgatagcg
      841 gcggtataga tggtggtcat ctggatgtcg tccggcagcg gccacaccgt gacgccccgg
      901 ttgggcagca tttcgctgat cagggtgacg ccatattgtg cctcgccgcc ggcgacggcc
      961 gccgccacac cggtgccatc aggtttcagc accgccttgg cgcggaccgg ccccccgatg
     1021 ccgagcttgt cggcttgctg caggaaaaat actccggtga tgccgccgga ggccggatcc
     1081 acgtaagcga tattcttcgc cgccagcagg gtggtcttga cctggccgcc gtcggcgatg
     1141 gccggcttgg ccgtacccgc ttttgcggaa atgcccgcca ccatttgcgc caggtcggca
     1201 tgggcggcca gcaccttgtt ttcccgggcc aagctgtcca gcacggtggt ggtgccgatc
     1261 accaggtcga acttctcgcc cgcctccatg tgcttctgca cgccgccggc ggtatcgctc
     1321 accaccgtga ccgtgtcgcc ggtgcggaag ccgaagtcgg cggccagcgc cctcaccggc
     1381 atggacatgc ccgcgccggt gaggattttg aggtccctgg cctgggcagc cccggccagc
     1441 agcaaaagcg acgccggaac gatgatacgg tacatgctgg gcccttcggg cgctgcctta
     1501 tgtcttgttg cgcgcggcgc gccagcgttt tatcagggat caaacaaggc gcaaagcaaa
     1561 ggggagatgg tgatgaagaa ggtttttctc gcaagcgcag caatcgcgat ggcgatgctg
     1621 atttcggttc cggccggggc ggcggagtac gccaccatcc tgctggacaa agtggtcaac
     1681 cgcacaccag accagacctg ggccaagatc gggccttatt gctccatcgc cacttggctg
     1741 aaagttactt gtgtcatcac cgcgggcaac ggcgtcagcg tcggcagcaa ccgtctgctc
     1801 aatggcaaca acaatgagat catggtggcg gcgacgcctt attcctacag ctacacccag
     1861 cccgccacga ccattctcta tcacggcacc ctggcggtgg aaccgctgga tcgcggccgc
     1921 cagaccaaga ttgtctacac cctgttctat gaccaggcgc ccttgggcac cgaccaggcc
     1981 aaggcggaaa accgggcgat gcgcaccaag cgcttcagcg aggcgctgga cgccatgaag
     2041 gcaatggcgg aatctccgta atgatcgacg tattgcagtt ggtgccgctt cgccccgaag
     2101 tccagaagga attggcggcg cgctatcgtc tccatggcaa ggccgatttc gacaaggtcg
     2161 cggacattgt gcgcgcctgt gtcaccaacg gccattccgg cccgccgccg gagatgatcg
     2221 accgcatgcc caagctggaa atcatcgctt cggccagcgt gggttatgac ggcattccgg
     2281 tggagtatgc gcggtccaag ggcattccgg tcaccaacac gcccgaagtg ctgaatgacg
     2341 atgtcgccga tcttgccatc gcgctgatga tcatgacggc gcgccggctg gtggcgtcgg
     2401 acacctatgt gcgcagcggc aaatggccgt ccggctggga atatcccctg tcgcaaaagg
     2461 ccagtggcaa gcgggtgggc attttgggca tggggcgcat cggcaaggaa atcgccaagc
     2521 gagccgaggc gatgaacaac accatcgcct atcacagccg ccgtccggtg gcggatgtgt
     2581 cctacaaaca ttatcccgac ctggttgaac tggccaggaa cagcgacttt ctggtggtga
     2641 tcattccttc cacgccccag acccacaaga
//
LOCUS       DATMDK010000147         6238 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1899992,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000147 DATMDK010000000
VERSION     DATMDK010000147.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 6238)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6238)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6238
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1899992"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..649)
                     /locus_tag="VNN98_02870"
     CDS             complement(<1..649)
                     /locus_tag="VNN98_02870"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61062.1"
                     /translation="MKRLKSPLATLLLAAAAAMAIPAAAQDLGYTTSQPLMLPHDIFF
                     GTAAGVATNSKGNVFVYTRNGEPTVSLGGSRAFAHGGSSLYEFAPDGKFIRQIGKQVY
                     GFLAAQAVRVDKSDNIWVVDRYSSMVMKFDPQGRIVMLLGRKPESVDIPSSPDTGRGN
                     PPGSGQQSDLFQSPTDVAWDASGNIFVADGIGNARIAKFTRDGVFVKSWGSRGTAD"
     gene            complement(651..1685)
                     /locus_tag="VNN98_02875"
     CDS             complement(651..1685)
                     /locus_tag="VNN98_02875"
                     /inference="COORDINATES: protein motif:HMM:NF013595.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61063.1"
                     /translation="MKAYLAATAAISLLLSTVSAFAQVAATAASTAPDLAYEAVPGFF
                     KTPAGDTMGELQGVATNSKGNIFAFFRGPQTRLWEFAPDGKFLKEIGKGFYGFLFAHS
                     VRVDAQDNIWTVDEGTNVITKFDPTGTKVLMVIGHRPSQADGPYATPKGPNPPDEKYT
                     LCRPTDVAWDMQGNIFISDGYCNNRVVKYDKNGRFLAENGGAAPGKGDNQYNLPHGLQ
                     VDHAGNVYVADRGNARYVVLDNNLKWKTTYNQYGSAWSDCISEGPHQYLFVSNSNPNG
                     NAPGSWKIGGQIYKMELDGTVIGKFGHAGKLAPGFQVVHMMDCRNPNQIIVGEIESWR
                     MQKFVLKGSK"
     gene            complement(1862..2434)
                     /locus_tag="VNN98_02880"
     CDS             complement(1862..2434)
                     /locus_tag="VNN98_02880"
                     /inference="COORDINATES: protein motif:HMM:NF012436.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferritin-like domain-containing protein"
                     /protein_id="HWM61064.1"
                     /translation="MGQAANIQKPFLSDVQTLRDRARKNLNDGAIGSNYVGDVSKTIE
                     ILQSVLATEIVCVLRYTQHSIAGHGISSEGVKAEFAVHAKEELEHVHMVAERINQLGG
                     NPDFNPEGLLSRSASQYVAGGNLVELIKENLIAERIAVDHYRELIRYFGNDDPGTKNM
                     LEDILRVEEEHADDMHDLLVAHEGKPMLKN"
     gene            complement(2500..2706)
                     /locus_tag="VNN98_02885"
     CDS             complement(2500..2706)
                     /locus_tag="VNN98_02885"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61065.1"
                     /translation="MKRIFCQILSCWVMVFFVTGAVAHPRLLRVSDACLDSMETVPDD
                     DDLDPTEVAVDGGCMLAPEPVIAV"
     gene            2922..5984
                     /locus_tag="VNN98_02890"
     CDS             2922..5984
                     /locus_tag="VNN98_02890"
                     /inference="COORDINATES: protein motif:HMM:NF024120.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyl hydrolase family 28-related protein"
                     /protein_id="HWM61066.1"
                     /translation="MKMLLLSAALLLGAAGSAAAQPGTSAFTTQLDDPRAIALSGAVG
                     DGKADDSAALQAAIDKAAADRDEGIVFIPQGRYRLSRTIYVWPAVRVIGWGARRPVFV
                     LGDNTPGFSKGVADMVIFAGARPRRPSITGSGGETRGNAFKVPFPPSGSVPPNPAIAD
                     ANPGTFYSAMSNIDFEIGKGNAGAVAIRFHGAQHDYLSHMNFHIGSGLAGLNQVANEA
                     EDLRFFGGRYGILAEKPSPAWQFTLIDSRFEGQREAAIREHEASLTLVNASFRNVPVA
                     IDIDPDYSDWLWVKNSRFENISKAAVIVSNENSVYTQIGFENAVAANTPVFARFRESG
                     KTLGASGIYEVKAFNHGLILKTPGALGETGTRWDAAPLASMPAPLPPAIRPLPPTAVW
                     VNIKTLGVKGDGKSDDTAAIQHAIDTTKVIYVPSGRYMVHDTIRLKPDTVLIGLHPSI
                     TQFDLPDNTPGFGGIGAPKALLETPKGGDNIVSGIGLFTGGINPRAVEALWQSGEHSL
                     MDDVRFLGGHGTNNPDGSRWNPYNDTHSADPDMRKRWDGQYPSLWVTNGGGGTFTNLW
                     TVDTYAQAGVTVSDTITPGHIYEISSEHHVRNEFQFLRAENWEVYAPQTEEEAGESQE
                     AISLEIANSRNITIANWHAYRVTRTVRPVDTAARIFNSSDIHFRNIHVNAESGLGTCD
                     ANGCSTYLRASKFPAENAIRDVTHHIDTREREFAVLDYPAAPLAPAPHDMGVKVEKLE
                     DGFYSISGAAVDGRGKLYFVDKHQQRIYGWSRTEGLSIERDNPTDPVNLAFDNSGNLL
                     VLSSLGAEGTLYTFKPDSPATALTVIPPTPVAAHPGATALLPGNYWNNGEFKDQLDPK
                     TYRYTTLSEMFARDMAAPKTKEYVSPDGSLFLPASRTFSQGPPDGTGWRFSDNLQTYG
                     FVAAKPGSRVFVSNESEGRTYGGLVGGDGRVTDLKLFANRGGESVAVAANGNVYIANS
                     QVLVYAPDGKQIGQIDVPERPLQILFGGVDRRTLFILTHHALYVAATR"
BASE COUNT         1230 a         1930 c         1870 g         1208 t
ORIGIN      
        1 cgtcggcggt gccgcgcgaa ccccagcttt tgacgaacac gccgtcgcgg gtgaatttgg
       61 cgatacgggc attaccgatg ccgtcggcga cgaagatgtt gccgcttgcg tcccaggcca
      121 cgtcggtggg cgactggaac aggtcgcttt gctggcctga gccgggcgga ttgccgcgcc
      181 cggtatcagg agaggatggg atatccaccg attccggctt gcggcccagc agcatgacga
      241 tgcgaccttg cggatcgaac ttcatcacca tggaactgta gcggtctacc acccagatat
      301 tgtcgctttt gtccacgcgc acagcttgcg cggccaggaa accgtaaacc tgcttgccga
      361 tctggcggat gaattttccg tccggcgcga actcataaag actggagccg ccatgggcga
      421 aggcgcggct gccgcccaaa gagacggtgg gttcgccgtt gcgggtatag acgaagacat
      481 tgcccttgga attggtggcg acgccggccg ccgttccgaa gaaaatgtca tgcggcagca
      541 tcagcggctg ggaggtggtg tagcccagat cttgggccgc ggcggggatc gccatcgcgg
      601 cggcggcggc gagcaaaaga gttgccaaag gggatttgag acgcttcatg ttacttgctc
      661 cccttcaaga cgaatttctg catgcgccag gattcgattt cgccgacgat gatctggttg
      721 ggattgcggc agtccatcat gtgaaccacc tggaagcccg gcgccagctt gccggcatga
      781 ccgaacttgc cgatcacggt gccgtccagc tccatcttgt agatctggcc gccgatcttc
      841 cagctgcccg gggcattgcc attggggttg gaattggaga cgaagagata ctggtgcggc
      901 ccttccgaaa tacagtcgga ccaagcgctg ccatactgat tgtaggtcgt cttccatttc
      961 agattgttgt ccagcacgac atagcgggcg ttgccgcggt cggcgacata gacattgccg
     1021 gcatggtcca cctgcaagcc gtgcggcagg ttgtactggt tgtcgccctt gccgggcgca
     1081 gcgccgccat tttcagcgag gaagcggccg ttcttgtcat acttgacgac gcggttgttg
     1141 cagtagccgt cactgatgaa aatgttgccc tgcatgtccc aggcgacgtc ggtggggcgg
     1201 cacaacgtgt atttctcgtc cggcggattg gggcccttgg gcgtggcata ggggccgtct
     1261 gcctggctgg ggcgatgacc gatcaccatc aacaccttgg tgccggtggg atcaaatttg
     1321 gtgatgacgt tggtgccctc atccaccgtc cagatattgt cctgggcatc gacgcgcacg
     1381 gagtgggcga acaggaagcc gtaaaagccc ttgccgattt ccttgaggaa tttgccgtcg
     1441 ggggcgaact cccacagcct tgtctgcggc ccgcgaaaga aggcgaagat gttgcccttg
     1501 gaattggtgg caacaccttg cagctcgccc atggtatcgc cggcgggcgt cttgaagaag
     1561 cccggcactg cctcataagc gagatcgggg gcggtgcttg cggccgtggc cgcgacctgc
     1621 gcaaaggccg aaaccgtgct gagcagcaga gaaatcgcag ccgtcgccgc cagatatgcc
     1681 ttcacttgag acctccccaa taaatccgcg ctctgatggc gttttggatt atgccgggac
     1741 gtctatacag caaagcggca agggtgcgaa agcgctctgc tcaacttttc gctttgtgaa
     1801 gattacgctg cggtgcagcg acccgcttgc cggacttcag gcaaaaggac aggcagccag
     1861 gctagttctt caacatgggc ttgccttcat gcgccaccaa cagatcgtgc atgtcatcgg
     1921 catgctcttc ttcgacccgc aatatatctt ccagcatgtt cttggtgccg ggatcgtcat
     1981 tgccgaaata gcggatcagc tcgcgataat ggtccaccgc gatgcgttcg gcgatcagat
     2041 tctccttgat caactccacc agattgccgc ccgcaacata ttgcgaggcg gaacggctga
     2101 gcagtccttc aggattgaaa tcgggattgc cgcccagctg gttgatgcgc tccgccacca
     2161 tatggacatg ttccagctct tccttggcat ggacggcgaa ctccgccttg acgccttcgc
     2221 tggagatgcc gtggccggcg atggaatgct gggtatagcg caggacgcag acgatctcgg
     2281 tcgccagcac cgactgcaat atctcgatgg tcttgctgac atcgccgaca taattgctgc
     2341 cgatggcgcc gtcattgagg tttttgcgcg cccgatcgcg caaggtttgc acgtcgctga
     2401 ggaacggctt ttggatgttg gcggcctggc ccatgggaat ctccttgccc gatgaaccgg
     2461 gataacggcc gggccaggca gaggttcccg ctggggagat tagaccgcga tcacgggctc
     2521 gggagcaagc atacagccgc catccaccgc gacttccgtc gggtccagat cgtcgtcgtc
     2581 gggcaccgtc tccatactgt ccaggcaggc gtcggagacc cgcaggagcc gtggatgcgc
     2641 cacagccccg gtgacgaaaa acaccatcac ccagcagctc agtatctgac aaaagattcg
     2701 tttcatcgcg ccagcccgcc tttgcgtaag ccttccgcgt ccgcccccgg acacagccga
     2761 aagactctaa aatctgagag ttaatatagc agatattttg cactgcaata taactttcgc
     2821 gagttcccgg gcgcggcaaa actgccccaa ggaacttggc tttggcgacg cgaagttccc
     2881 gatctgctag gaaaccgccc aacaaacccg ggatcgccgt catgaagatg ctacttcttt
     2941 ctgccgccct gctgctgggc gccgccgggt ccgccgccgc ccagccgggt acatccgcct
     3001 tcaccaccca gctggacgat ccccgcgcga ttgcgctcag cggggcggtg ggcgacggca
     3061 aggccgacga cagcgctgca ctccaggccg cgatcgacaa ggcggcggcg gatcgtgacg
     3121 aaggcatcgt gttcattccg caaggccgct atcgcctgag ccgcacgatt tacgtctggc
     3181 ccgcggtgcg ggtgatcggc tggggcgcac gccgccccgt cttcgtactg ggcgacaata
     3241 cgccgggctt ttccaagggc gtggccgaca tggtgatttt cgccggcgcc cggccgcgtc
     3301 gcccttccat caccggcagc ggcggcgaga cgcgcggcaa cgccttcaag gtgccctttc
     3361 ctccctccgg cagcgtaccg cccaatcccg ctatcgccga cgccaatccc ggtactttct
     3421 attcagcaat gagcaacatc gatttcgaga tcggcaaggg caatgccggc gcggtggcca
     3481 tccgcttcca tggcgcacag cacgattatc tcagccatat gaatttccat atcggctcgg
     3541 gcctggccgg gttgaaccag gtcgccaatg aagccgaaga cctgcgcttc ttcggtggcc
     3601 gttacggcat cctggccgag aagccttcgc ccgcctggca gttcaccttg atcgacagcc
     3661 ggttcgaggg ccagcgcgag gccgcgatcc gcgaacatga agcttcattg accttggtaa
     3721 atgccagctt tcgcaatgtg ccggtggcga tcgacataga tccggattat tccgactggc
     3781 tgtgggtgaa gaacagccgc ttcgagaata tctctaaagc cgccgttatc gtcagcaacg
     3841 agaacagcgt ctacacccag atcggttttg agaatgccgt cgcggccaat acgccggtgt
     3901 tcgcccgctt tcgcgaaagc ggcaagacgc tgggtgcaag cggcatctat gaagtcaaag
     3961 ccttcaatca cggattgatc ctcaagacgc ccggcgcgct gggcgaaact ggaacgcgct
     4021 gggatgcggc gccgctggcg tcgatgccgg cgccgctgcc gccggccatc cggccactgc
     4081 cgccgacggc cgtctgggtg aatatcaaga cattgggggt gaagggcgac ggcaagagcg
     4141 acgacaccgc tgccatccag catgccatcg acaccaccaa ggtgatctat gttcccagtg
     4201 gtcgctacat ggtgcatgac actatccgcc tcaaacccga tacggtgctg atcggcctgc
     4261 atccttccat cacccagttc gacctgcccg acaatacgcc gggattcggc ggcatcggtg
     4321 cgcccaaggc attgctggaa acgcccaagg gcggcgacaa tatcgtctct ggcatcggcc
     4381 tgttcactgg cggcatcaat ccgcgcgccg tggaagcatt gtggcagtcg ggcgaacatt
     4441 cgctgatgga cgatgtgcgc tttctgggcg gccacggcac caacaatccc gacggctcgc
     4501 gctggaatcc ctataacgac acccacagcg ccgatccgga catgcgcaag cgctgggacg
     4561 ggcaatatcc ctcgctgtgg gtgaccaatg gcggcggcgg cacctttacc aatctgtgga
     4621 cggtggacac ctatgcccag gcgggtgtca ccgtctcgga caccataact cccggtcaca
     4681 tttatgagat ttctagcgaa catcatgtgc gcaacgaatt ccagttcctg cgcgccgaaa
     4741 actgggaggt ctatgccccc cagaccgagg aggaagccgg cgaaagccag gaggccatct
     4801 cgctggagat cgccaattcc cgcaacatca ccatcgccaa ctggcacgcc tatcgcgtca
     4861 ctcgcacggt gcggccggtg gacacggcgg cgcggatttt caattcgtcc gacattcatt
     4921 ttcgcaatat ccatgtcaat gccgaaagcg ggctggggac ctgcgacgcc aatggctgca
     4981 gtacttattt gcgcgccagc aaatttccgg ccgagaacgc catccgcgat gtgacgcacc
     5041 acatcgacac gcgtgagcgc gaattcgcgg tgctggacta tccggccgcg ccgctggccc
     5101 cggcaccgca tgacatgggc gtgaaagtgg agaagctgga agatggtttc tattccatct
     5161 ccggtgcggc agtggatgga cgcggcaagc tctacttcgt cgacaagcac cagcagcgca
     5221 tctatggctg gtcacgtacc gaaggcctgt ccatcgagcg tgacaatccc accgatcctg
     5281 tgaacctggc tttcgacaac agcggcaacc tgctggtgct gtcgtcgctg ggggcggaag
     5341 gcacactcta taccttcaaa ccggattcac ctgccacggc gctgacggta atcccgccca
     5401 ccccggtagc ggcgcatccg ggcgccaccg ccttgctgcc cggcaattat tggaacaatg
     5461 gcgagttcaa ggatcagctc gatcccaaga cctatcgcta caccaccttg agcgagatgt
     5521 tcgcccggga catggcggcg cccaagacca aggaatatgt ctcgcccgac ggcagcttgt
     5581 ttctgcccgc cagtcgcact ttcagccaag gcccgccaga cggcaccggc tggcgctttt
     5641 ccgacaatct gcagacctac ggcttcgtcg ccgccaagcc aggcagtcgc gtctttgtca
     5701 gcaacgagtc ggaggggcgc acctatggcg ggctggtggg cggcgacggc cgcgtcaccg
     5761 acctgaagct gttcgcgaac cgtggcggcg aaagcgtggc ggtggccgcc aacggcaatg
     5821 tctatatcgc caatagccag gtgctggtct acgcccccga cggcaaacag atcggccaga
     5881 tcgatgtgcc ggaacggccg ctgcagattc tgttcggcgg cgtggacagg cggaccttgt
     5941 tcatcctcac ccatcacgcc ctgtacgtag cggcaacgcg atagcacgca accaaaaaaa
     6001 ggccgcgcct tggcgcggct ctttccgttt ggcgacatta tcttttacaa acccaccgca
     6061 tgatgtagat gcttggcaga aattacgtcg gtggggctag cctcagaacc acgggatcgg
     6121 gattgcggcg gaaaccggcg cgttcgtaga acggataagc cctgtcactt ggccaaacta
     6181 cgagcaactc caaactctcg ccaattgccc aacgcttgat cgccgccagc aattgact
//
LOCUS       DATMDK010000148         2897 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2809444,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000148 DATMDK010000000
VERSION     DATMDK010000148.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2897)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2897)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2897
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2809444"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..535
                     /locus_tag="VNN98_02895"
     CDS             <1..535
                     /locus_tag="VNN98_02895"
                     /inference="COORDINATES: protein motif:HMM:NF015817.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DbpA RNA binding domain-containing protein"
                     /protein_id="HWM61067.1"
                     /translation="QTGERQHALSHERGHERGAAPGEMANGVWFRLNVGRERNADPKW
                     LLPEICRQGELTKKDIGAIRVFEMETLFQVDPAAAPKFTILVSERKKGGVRISPALDQ
                     TGESTARPRETTPRSDDAPGGAPPRKPYQGGKPNFHGKKFGDKPAGDKKSGGKKFGKP
                     GGGYKGKNPRSPKPQTP"
     gene            complement(532..1860)
                     /locus_tag="VNN98_02900"
     CDS             complement(532..1860)
                     /locus_tag="VNN98_02900"
                     /inference="COORDINATES: protein motif:HMM:NF013799.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkaline phosphatase family protein"
                     /protein_id="HWM61068.1"
                     /translation="MTLARVTCLVAGLLIVPAFAQAAPVLMISIDGLRPGDALEAGAR
                     GIKVPALRNLMADGVYASGVRNALPTVTYPNHTTLITGVWPAKHGIANNPTFDPLQKN
                     MGGWYWYSQDIKVQTLWDAVHQTGGKVASLSWPVSVGAKSIDFNLPEYWRANLPEDLK
                     LLSALSTPGIVPLLEKKTGLTLGQADGESVEVDVGRARFAGALIAAKHPQFTTVHLRG
                     LDHIEHESGPGSSEAKAALETLDAAVGRLIVEARKAEPSLVVAIVSDHGFAPVEHAVN
                     LIAPFVQAGLITLDTGNKVTAWQAEPWGGASAAIVLAHPDDAALKAKVSALLNDLAAK
                     PELGIAHVAEASEIAQLGGTPMASFWVDFKPGYMMGTNPAAPPVGPGTVKGTHGYFPI
                     HPEMRATFILSGPSIARRGSLGEVDMRDIAPTLAKIMKVSLPGADGRPLL"
     gene            2050..>2897
                     /locus_tag="VNN98_02905"
     CDS             2050..>2897
                     /locus_tag="VNN98_02905"
                     /inference="COORDINATES: protein motif:HMM:NF019335.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Plug domain-containing protein"
                     /protein_id="HWM61069.1"
                     /translation="MTASLRRTFKCVLFVTTAIGALPLAAQAQTVVPSGDNGGVETVI
                     VTSDRESTHSAVEINNVQAQKILPGISPLKAIDTLPGVVYETADPWGNNEQNESLVVH
                     GFTTQQLGYTMDGVPLGDQQYGNYNGLSPSRALTSENVRRVTLSSGTGSLGVASTSNL
                     GGAIEAFSSDPTDTMGVDLRQTGGSYDTSRTFIRFDSGEMGDLGAVYLSYLHQNQRAW
                     DFDGYQHGDQLNLKYVHANDVGRFTFYADWDSKVEPNEDATAFGSQQTAAAAGFIPYS
                     RPFQYP"
BASE COUNT          562 a          938 c          899 g          498 t
ORIGIN      
        1 ccagaccggc gaacgccagc atgcgctctc ccacgaacgc gggcacgaac gcggggccgc
       61 cccgggcgag atggcaaatg gggtctggtt ccggctcaat gtcgggcgcg agcgcaacgc
      121 cgatcccaaa tggctgctgc cggaaatctg ccgccagggc gaactgacca agaaggatat
      181 cggcgccatc cgggtgttcg agatggagac cctgttccag gtcgatcccg cagcggcgcc
      241 gaaattcacc atcctggtca gcgaacgcaa gaagggcggg gtgcgtattt cacccgcgct
      301 ggaccagacc ggcgaatcca ctgcgcgccc gcgtgaaacc acgccgcgca gcgacgacgc
      361 gccgggtggc gctccgccgc gcaagcccta tcagggcggc aagccgaact ttcacggcaa
      421 aaagttcggc gacaagccgg ctggcgacaa gaaatccggc ggcaagaagt tcggcaaacc
      481 gggtggcggc tataagggca agaatcccag aagccccaag ccgcagaccc cctaaagcag
      541 cggtctgccg tctgcgccgg gcagcgacac cttcatgatt ttcgccaggg tgggcgcgat
      601 gtcgcgcatg tccacctcgc ccagtgagcc gcgccgggca atcgacgggc cggacaggat
      661 gaaggtggcg cgcatttccg gatggatggg gaaatagcca tgggtgccct tcaccgtgcc
      721 cggaccgacc ggcggcgcgg cggggttggt gcccatcatg tagccgggct tgaaatccac
      781 ccagaaggac gccatcggcg tgccgcccaa ctgcgcaatc tcgctggcct ccgcgacatg
      841 ggcgatgccc agttcgggtt tggcggcgag atcgttcaac agcgctgaca ctttggcctt
      901 cagtgcggca tcgtcggggt gcgccagcac gatcgccgct gaagcgccgc cccagggttc
      961 ggcctgccat gcggtgacct tgttgccggt atccaaagtg atcagtccgg cctggacaaa
     1021 gggcgcgatc agattgaccg catgttccac cggcgcgaag ccatgatcgg acacgatggc
     1081 gaccaccagg ctgggctcgg ccttgcgcgc ttcaacgatc aggcggccca cagcagcatc
     1141 caatgtttcc agcgcggctt tggcctcgga cgagccggga ccggactcat gttcgatatg
     1201 atccagtccg cgcagatgca ccgtggtaaa ctggggatgc ttggcggcga tcagcgcgcc
     1261 ggcgaaccgg gcgcggccca catccacttc cacgctttcg ccgtcagcct ggcccaatgt
     1321 cagtcccgtc ttcttttcca gcaagggcac gatccccggc gtggacaagg cgctgagcag
     1381 tttcaaatcc tcgggaagat tggcgcgcca atattccggc aggttgaagt cgatggactt
     1441 ggcgccgacg ctgaccggcc aggacaggct ggcgaccttg ccgcccgttt gatgcaccgc
     1501 gtcccacagg gtttggacct tgatatcctg gctgtaccaa taccagccgc ccatattctt
     1561 ctgcagcgga tcgaaagtcg ggttgttggc gatgccgtgc ttcgccggcc acaccccggt
     1621 gatcagggtg gtgtggttgg gataggtgac ggtgggcaag gcgttgcgca ccccgctggc
     1681 atagacgccg tcggccatca ggttgcgcag cgcgggaacc ttgatgccgc gcgcgccggc
     1741 ttccagcgca tcgcccgggc gcaggccgtc gatggagatc atcaggaccg gcgcggcctg
     1801 cgcaaaagca ggcacgatca gcaaacctgc caccaaacat gttacgcgtg ccaaggtcat
     1861 cgaatgtctc cgctactgaa aagacattca gtattcggcc catcctacag gcagatgaca
     1921 attacccgcg cagttgtcgc atgcgatgtc tgtgcatttc acaaaagcgc aacacaactg
     1981 attcctttcc gtatcgcgcc tcccctaggt agccagagtg ccatttgcgc tttttaaaag
     2041 gggattttca tgaccgcgtc tctgcgccgc acgttcaaat gtgtgctgtt cgtcaccact
     2101 gccattggcg cgctgccgct tgcggcgcag gcccagaccg tggtgccgtc gggcgataac
     2161 ggcggggtgg aaaccgtgat cgtgacctcc gaccgcgaaa gcacccattc ggcggtggaa
     2221 atcaacaatg tccaggcgca gaagatcctg cccggcatca gcccgctgaa ggcgatcgat
     2281 accctgccgg gcgtggtcta tgaaaccgcc gacccctggg gcaacaacga acagaatgaa
     2341 tcgctggtgg tgcacggctt taccacgcag cagttgggct acaccatgga cggggtgccg
     2401 ctgggcgacc agcaatatgg caactataac ggcttgtcgc cgtcgcgcgc cctgaccagc
     2461 gaaaatgtcc ggcgcgtgac cttgtcttcg ggcaccggct cgctgggcgt ggcctcgacc
     2521 agcaatctgg gcggcgccat cgaagccttt tccagcgatc ccaccgacac aatgggcgtg
     2581 gatctgcgcc agaccggcgg cagctacgac accagccgca ccttcatccg cttcgactcg
     2641 ggcgagatgg gcgacctggg cgcggtctat ctgtcttacc tgcaccagaa ccagcgcgcc
     2701 tgggacttcg acggctatca gcatggcgac cagctgaacc tgaaatatgt ccatgccaat
     2761 gatgtggggc gcttcacctt ctatgctgac tgggattcca aggtcgagcc caacgaagac
     2821 gccaccgcct tcggcagcca gcagaccgcc gcggccgcag gctttatccc ctattcccgc
     2881 cccttccagt atcccaa
//
LOCUS       DATMDK010000149         4191 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_757561,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000149 DATMDK010000000
VERSION     DATMDK010000149.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 4191)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4191)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4191
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_757561"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..287
                     /locus_tag="VNN98_02910"
     CDS             <1..287
                     /locus_tag="VNN98_02910"
                     /EC_number="4.2.2.n1"
                     /inference="COORDINATES: protein motif:HMM:NF013618.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016798 - hydrolase activity, acting on
                     glycosyl bonds [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="lytic transglycosylase domain-containing
                     protein"
                     /protein_id="HWM61070.1"
                     /translation="SPKGARGVMQLMPGTARGLGVNAGDLSANVDDGAAYLAQMLDRF
                     DGDIIKSLAAYNAGPEAVTRYGGVPPYPETQAYVSAVLGRLADSKTEVQP"
     gene            284..604
                     /locus_tag="VNN98_02915"
     CDS             284..604
                     /locus_tag="VNN98_02915"
                     /inference="COORDINATES: protein motif:HMM:NF016820.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TrbC/VirB2 family protein"
                     /protein_id="HWM61071.1"
                     /translation="MKRLFAGAMFAAAATPVLYTQAWAQVVNQDPAGSSPLVAALEWV
                     QGTLLGNVATAAAVIAVAVVGFMMLTGRIEWRRGLTVVIGCFIIFGAVAIVSGIRSLA
                     GGLH"
     gene            607..891
                     /locus_tag="VNN98_02920"
     CDS             607..891
                     /locus_tag="VNN98_02920"
                     /inference="COORDINATES: protein motif:HMM:NF010474.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV secretion system protein VirB3"
                     /protein_id="HWM61072.1"
                     /translation="MARLTSDPVFSALTRPQMMGGVTYGYAVFNLIVTLELFLLTGSF
                     WCFAVAGVLHVIGYLGCLRDPRFFDIWGVKLRHCPRVKNHWFWRMNSYRP"
     gene            888..3278
                     /locus_tag="VNN98_02925"
     CDS             888..3278
                     /locus_tag="VNN98_02925"
                     /inference="COORDINATES: protein motif:HMM:TIGR00929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VirB4 family type IV secretion system protein"
                     /protein_id="HWM61073.1"
                     /translation="MMMQFFRNRAARTLAPKEAAIGDRLPYLGHLDEVTLKTRDGLLV
                     QTIHLRGFPFETASDDELNYRKAMRETLLRGAASSRLAIYHHVVRRRVNTEFDAAPTD
                     PFCRRLDDAWRARLARRQLYVNEIFLTLVRRPLQGGAGFIEKLLKKPGENAALLEREL
                     RQLHATRETFLATLAPYGPRTLSLYKGPTGLCSEPAEFLSLLTNGVARRVLAPSGDLG
                     QTLATRRLSFGFDAMEFSASGNERASYGAMLSLKDYPLRSLPGMLDGVLRLPFEMVLT
                     ESFAFVEQQTALSRMGQALRRLRAADHDAISLRGELAAAKDDVAAGRAAYGEHHLSIL
                     ARTPTLEALDQATADVQSALAETGAIAVREEMNLEPAFWAQFPSNFGLIAHKAMISTA
                     NFASLASFHNHPTGQVSDNHWGAPITVLETTSFGPYHFNFHSGDLGNFTIIGPSGSGK
                     TALLAFLLAQAERMQPRIAYFDKDRGAEGFIRAIGGRYDVISPGTPTGFNPLALPDTG
                     ENRTFLSEWLSRLLSSYGAPLTAEDRAIIADAIDANYAQDPSHRRLRYLRELFRGQRR
                     PSAGDLSARLGAWCDGGEHAWLFDNEDDALDVGSRILGFDMTRILNSPTTRTPAMMYL
                     FHRIEQRLDGTPAIIVVDEGWKALDDDIFVAKIKDWEKTIRKRNGVVGFCTQNADDAL
                     ESRVGPAIIEQSATQIFFPNPKARAADYMEGFGLSEHEFELVRSLPDTSRCFLIKQAD
                     HSVVARLDLTGLTGELRVLAGTETSVRQLDALRAKLGDEPGAWLDAFMAGRGRNVA"
     gene            3275..>4191
                     /locus_tag="VNN98_02930"
     CDS             3275..>4191
                     /locus_tag="VNN98_02930"
                     /inference="COORDINATES: protein motif:HMM:NF016491.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0030255 - protein secretion by the type IV
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type IV secretion system protein"
                     /protein_id="HWM61074.1"
                     /translation="MSGCATVTDLGVVRDVLTAVDCNTKSFARLGYESLTASGSPFQT
                     ALTVLLTIYVAVIGYRLLFGNGARLSDGPGIALKIGAILALVSSWSLFQTLVFDMAER
                     APMEIAALISAPMRGPALAADPVAGLQAAYDQLSTTATAFAHPPKSIPDSAQASYAAA
                     SQALTLSANALFIASAGLIAVITIAIGLLTATGPLFIALFLFFETRGFFAGWVRALGA
                     CAFGLLSAWSLTVLMLHAVQPWLDALSDVGANGLADAHTGITAAVIVLVFCASQFGLL
                     LAGIVIARGFRLPAARRTTTNQTAAPLAE"
BASE COUNT          648 a         1426 c         1329 g          788 t
ORIGIN      
        1 tgtcgcccaa gggcgcgcgc ggcgtgatgc agctgatgcc ggggaccgct cgcggcctgg
       61 gtgtcaatgc cggcgatctg tccgccaatg tcgatgacgg tgccgcttat ctggcgcaga
      121 tgctggaccg tttcgacggc gacatcatca agagcctggc cgcctacaat gcgggccccg
      181 aagcggtgac gcgctatggc ggcgtgccgc cctaccccga aacccaggcc tatgtgagtg
      241 ccgtgctggg ccgattggcg gacagcaaga cagaggtaca accatgaaac gtttgtttgc
      301 aggcgcaatg ttcgccgccg ctgcgacccc ggtcctctac acacaggctt gggcgcaagt
      361 ggtgaaccag gaccccgccg gctcctcgcc gttggtggcg gcgctggaat gggtgcaggg
      421 caccttgctg ggcaatgtcg ccacggcggc ggcggtgatc gcggtggcgg tggtcggctt
      481 catgatgctg accggccgca tcgaatggcg gcgcggcctg accgtggtga tcggctgttt
      541 catcatcttc ggcgccgtgg ccatcgtatc gggcatccgt tcgctggcgg gcgggctgca
      601 ctgagcatgg cgcggctgac ctccgacccg gtgttcagcg ccctgacgcg gccccagatg
      661 atgggcgggg tcacttacgg ctatgccgtg ttcaatctga tcgtgacctt ggagctgttc
      721 ctgcttaccg gttccttctg gtgctttgcc gtagccggcg tgctgcatgt gatcggttat
      781 ctcggctgcc tgcgcgatcc gcgctttttc gacatctggg gcgtcaagct gcgccactgc
      841 ccgcgcgtca agaaccactg gttctggcgg atgaattcct accgcccatg atgatgcaat
      901 ttttcagaaa ccgcgccgcc aggacgctgg cccccaaaga ggcggcgatc ggagaccggc
      961 tgccctatct gggccatctg gacgaagtca ccctcaagac ccgcgacggg ctgttggtgc
     1021 agaccatcca tctgcgcggc ttcccgttcg agaccgcctc ggacgacgaa ctgaattacc
     1081 gcaaggcgat gcgcgaaacc ctgctgcgcg gcgcggccag ttcgcggctg gcgatctatc
     1141 accatgtcgt gcgccgccgg gtgaacaccg aattcgatgc cgcgcccacc gatcccttct
     1201 gccgccggct ggacgatgcc tggcgcgcgc ggctggcacg gcgtcagctt tatgtgaacg
     1261 agattttcct cactctggta cggcggccgc tgcaaggcgg cgccggcttc atcgaaaagc
     1321 tgctgaaaaa gccgggcgag aatgccgcgc tgctggaacg cgaactgcgc cagttgcatg
     1381 ccacccgcga aacctttctc gccaccctgg cgccctacgg cccgcgcacc ctgtccttgt
     1441 acaagggccc caccggcctg tgttccgagc cggcggaatt tctgtctctg ctcaccaatg
     1501 gcgtcgcccg ccgggtactg gcgccgtcgg gcgatctggg ccagaccctg gcgacgcgcc
     1561 ggctgtcctt cggtttcgac gccatggaat tttccgcatc cggcaatgag cgcgccagct
     1621 atggcgccat gctgtcgctg aaggattatc ccctgcgctc gctgcccggc atgctggacg
     1681 gggtgctgcg cctgccgttt gaaatggtgc tgaccgaaag cttcgccttt gtcgaacagc
     1741 agactgcgtt gtcacgcatg ggccaggcgc tgcgccggct gcgcgccgcc gatcatgacg
     1801 ccatcagcct gcgcggcgag ttggccgccg ccaaggacga cgtcgcggcg ggccgtgcgg
     1861 cttacggcga gcaccatctt tccatcctgg cgcgcacgcc caccttggaa gcgctggacc
     1921 aggccactgc cgatgtgcaa tcggccctgg cggaaaccgg cgccatcgcg gtgcgcgaag
     1981 aaatgaatct ggagccggcc ttctgggcgc aattccccag caatttcggc ctgatcgcgc
     2041 acaaggcgat gatctccacc gccaactttg ccagtctcgc cagcttccac aatcacccca
     2101 ccggccaggt cagcgacaat cactggggcg cacccatcac cgtgctggag accacgtcct
     2161 tcggtcccta tcacttcaat ttccattccg gcgatctggg caacttcacc atcatcggcc
     2221 cgtcgggctc ggggaaaacc gcgctgctgg cgttcctgct ggcccaggcg gaacgcatgc
     2281 agccgcgcat cgcctatttc gacaaggatc gcggcgccga aggcttcatc cgcgccatcg
     2341 gcgggcgcta tgacgtgatc tcgccgggca cccccaccgg gttcaatccg ctggccctgc
     2401 ccgacaccgg cgagaaccgc accttcctgt cggaatggct gtcgcgtctg ctgtcctctt
     2461 acggcgcgcc gctgacggcg gaagaccgcg ccatcatcgc cgatgcgatc gacgccaatt
     2521 atgcgcaaga ccccagccac cgccggctgc gctacctgcg cgaattgttc cgcggccagc
     2581 gccgccccag cgccggtgat ttgtcggcgc ggctgggcgc ctggtgcgat ggcggggaac
     2641 acgcctggct gttcgacaat gaagacgatg cgctggatgt gggttcgcgc attttgggct
     2701 tcgacatgac ccggattttg aattccccaa ccacccgcac cccggccatg atgtacctgt
     2761 tccaccgcat cgagcagcgg ctggacggca cccccgccat catcgtggtg gatgaaggct
     2821 ggaaggcgct ggacgacgat atcttcgtgg ccaagatcaa ggattgggaa aagaccatcc
     2881 gcaagcgcaa cggcgtggtg ggcttttgca cccagaatgc cgacgacgcg ctggaaagcc
     2941 gggtcggccc cgccatcatc gagcaatccg ccacccagat cttctttccc aatcccaagg
     3001 cgcgggccgc cgattacatg gaaggcttcg gcctgtccga acatgagttc gaactggtgc
     3061 gcagcctgcc cgacacttcg cgctgctttt tgatcaagca ggccgatcac agcgtggtgg
     3121 cgcggctgga tctcaccggc ctgaccggcg agctgcgcgt gctggccggg accgagacca
     3181 gtgtgcgcca attggatgcc ttgcgcgcca agctgggcga cgagccgggc gcctggctgg
     3241 acgccttcat ggcgggccgc ggaaggaatg tggcatgagc ggctgcgcca ccgttaccga
     3301 cctgggcgtg gtgcgcgacg tactgacggc ggtggattgc aacaccaaga gcttcgcgcg
     3361 gctgggctat gagtccctca ccgcctcggg ttcgcccttc cagaccgcgc taacggtttt
     3421 gctcaccatt tatgtcgcgg tgatcggtta tcgcctcttg ttcggcaatg gcgcgcggct
     3481 gtcggatggc cccggcatcg ccctcaagat tggcgcgata ctggccctgg tctccagctg
     3541 gagcctgttc cagacccttg tgttcgacat ggccgagcgc gcgccgatgg aaatcgccgc
     3601 cctgatttcc gcgccgatgc gcgggccggc cctggccgcc gatccggtgg ccgggttgca
     3661 ggcggcctat gaccaactgt ccaccaccgc aaccgccttc gcccatccgc ccaaatcgat
     3721 tcccgattct gcccaggcca gctacgccgc cgcctcgcag gcgctgactc tttcggccaa
     3781 tgccctgttc atcgccagcg ccgggctgat cgccgtcatc accatcgcca tcggcctgct
     3841 caccgccacg gggccgttgt tcatcgcctt gtttctgttc ttcgagaccc gcggcttttt
     3901 tgcgggctgg gtgcgggcgc tgggggcttg cgccttcggc ctgctcagcg cctggagcct
     3961 gaccgtattg atgctgcatg cggtgcagcc ctggctggat gcgctgtcgg atgtgggcgc
     4021 caatggcctg gccgacgccc ataccggcat caccgccgcc gtcatcgtgc tggtgttctg
     4081 cgccagtcag ttcggtttgc tgctggcggg gatcgtgatc gcgcgcggct tccgcctgcc
     4141 cgccgcgcgg cggaccacca ccaaccagac cgccgcgccg ctggccgaaa g
//
LOCUS       DATMDK010000150         2080 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_3041579,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000150 DATMDK010000000
VERSION     DATMDK010000150.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2080)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2080)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2080
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3041579"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1574)
                     /locus_tag="VNN98_02935"
     CDS             complement(<1..1574)
                     /locus_tag="VNN98_02935"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HWM61075.1"
                     /translation="MKSMFFASTALIALATPALAQSYLPDAHLNDEMVVDIATRLPTP
                     VAQVASSVTVITAADIEARQERSLPDVLRSVPGLFITQTGGAGGQTSLFMRGTNSNHT
                     KVLLDGIDIADPSTANGAADISKLLTGDIAKLEVLRGPQGALYGSDAIGGVINIITRS
                     GEGPMKITADAEGGSFDTFNQRASVAGSEGDFYYAATVQHFHSGDTPVTPLNLLPPGQ
                     RRNDDFYDNITASTKLGYQVSDNFDLGLVGHYTNSLGKITGDAFNFVTFASFPSPTRT
                     RIESLQYETRGTAHLVLWDGRLDQTLGLAYGSNITAAQDPDNGDSRAIGDRIKLDWQG
                     NAKLTDGQTLVLGAETARDALHPGLSFGFPSILSRGITTNAGYGELQSDFGWGLYDSA
                     SIRYDDNSRFGNKATWRIAPAWVIGDTKLKGSVGTGFKAPALQQLYGTFGGNANLKPE
                     TSFGYDVGVEQSLLDGAITGGVTWFRNDVRNLIVSGPAPAFQLANIGRARTDGVESFI
                     AWKVMDTLTLRADYTYT"
     regulatory      complement(1697..1905)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00174"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="cobalamin riboswitch; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="adenosylcobalamin"
                     /db_xref="RFAM:RF00174"
BASE COUNT          384 a          629 c          662 g          405 t
ORIGIN      
        1 gtataggtgt aatcggcgcg caaggtcagt gtatccatca ccttccaggc gatgaagctt
       61 tccaccccat cggtccgcgc ccggccgata ttggccaatt ggaaggccgg cgcgggaccg
      121 gagacaatca ggttgcggac atcgttgcgg aaccaggtga cgccgccggt gatcgcgcca
      181 tccagcaaac tctgctccac acccacatcg taaccaaagc tggtttcggg cttcaggttc
      241 gcattgccgc cgaaggtgcc atagagctgc tgcagggctg gcgccttgaa gccggtgccg
      301 acgctgcctt tcaacttggt gtcgccgatc acccaggcag gcgcgatgcg ccaggtggcc
      361 ttgttgccga aacggctatt gtcgtcatag cggatcgagg cgctgtcata gagaccccag
      421 ccgaaatccg attgcagttc gccatagccg gcattggtgg tgatgccgcg cgacaagatg
      481 gaaggaaagc cgaaggacag gccgggatgc agcgcgtcac gcgccgtttc cgcgcccagc
      541 accagcgtct gtccgtccgt cagtttggca ttgccctgcc agtccagctt gatccggtcg
      601 ccgatcgcac ggctgtcgcc attgtcggga tcctgggcgg cggtgatgtt gctgccatag
      661 gccaggccca atgtctggtc caggcggccg tcccacaaca ccagatgcgc cgtgccgcgg
      721 gtctcatatt gcagcgactc gatacgggtg cgggtgggcg atgggaaaga ggcgaaggtg
      781 acaaaattga aggcgtcgcc ggtgatcttg cccaagctgt tggtatagtg acccaccagg
      841 ccgagatcga aattgtcgct aacctgatag cccagcttgg tgctggcggt gatattgtcg
      901 taaaaatcgt cgttgcggcg ctggccgggc ggcaacaggt tcagcggcgt caccggcgtg
      961 tcgccggaat ggaaatgctg cactgtcgcg gcgtaataga aatcaccttc ggaccctgcg
     1021 accgatgcgc gttggttgaa ggtatcgaag ctgccgcctt ccgcatcggc tgtgatcttc
     1081 atcggtccct cgccgcttcg ggtgatgata ttgatcaccc cgccgatggc gtcggagcca
     1141 tacagcgccc cttgcggccc gcgcagcact tccagcttgg caatgtcacc cgtcagcagc
     1201 ttggaaatat cggccgcgcc gttggctgtg gaggggtcgg cgatgtcgat gccgtccagc
     1261 agcactttgg tgtgattgga attggtgccg cgcatgaaca gcgaggtctg gccgcccgcc
     1321 ccgccggtct gggtgatgaa caggcccggc acgctgcgca gcacgtcggg caaggaacgc
     1381 tcctgccttg cttcgatgtc ggcggcggtg attacggtga cgctgctggc aacctgcgcc
     1441 accggcgtgg gcaggcgggt ggcgatgtcc accaccattt catcgttcaa atgggcgtcg
     1501 ggaagatagg attgcgccag cgccggggtg gccagcgcga tcaaggcggt ggatgcaaaa
     1561 aacatggact tcataaacgt ctcctggctc aggaggcgtc acgcgatctg aaaaagggat
     1621 tgctgcccca tgcgcgacga ctccaacatg tcgccgctgc ggttcacccc gctgcacccc
     1681 gcacaccccg gcaggctaca agacgacggt gcgaggcagg tttcctggct caccggatca
     1741 gcgcttgcgc ccgtcttccc aacaccttgc ggcatcagtg actttttaag aagcggtccg
     1801 gctcgcgcct tacgcctttg gacgaaaact catcggctac agttgcgggg gcagccgcgg
     1861 ttggtccgcg ttccctcacc ttgcacctgg gcggcttatg gggcggcggg aaccatccgt
     1921 caagttccgc tttcgcaggg cagcgcgccg tcgaaataaa gatcgtcatg acccgttcct
     1981 acgctgtcgc taggaactat gcgggccatc catacggtcg agagggttat ggatggcccg
     2041 ccccattcca atcaaaagag ggccgggcca tgacgatttt
//
LOCUS       DATMDK010000151         3729 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_987723,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000151 DATMDK010000000
VERSION     DATMDK010000151.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3729)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3729)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3729
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_987723"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..518
                     /locus_tag="VNN98_02940"
     CDS             <1..518
                     /locus_tag="VNN98_02940"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61076.1"
                     /translation="PLAGPVGPAIAATHAPRPLQFKTERATAKNEPAAKPEAPKPAPV
                     STTGVKSAAAQAEDLQARAEAIAKQLTNKPAAIAAAKTEANKEVAAKTEANKAPATQA
                     AANKPAPVAPKVPAPVTKTAEAKPTPVAPAPKVLPPTPMKAADAKPAAQKTAAKPKDA
                     IPGLRVSTNAY"
     gene            complement(698..1672)
                     /locus_tag="VNN98_02945"
     CDS             complement(698..1672)
                     /locus_tag="VNN98_02945"
                     /inference="COORDINATES: protein motif:HMM:NF012694.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system F family protein"
                     /protein_id="HWM61077.1"
                     /translation="MMGGFMNLLFDKSFLVTLFVGILAFATVVTLGVPLLENNGLDDR
                     LKSVARRREELRAKHHAALNAKRGSLRIEPTSYMKATLDRFKLGNILEGENSREKLAS
                     AGYRGQAPLITFMFFRFVMPFLVFSITLFYSFLILHLSWPPLEKVRVAFVGALIGFYL
                     PDLFVNNMIARRQQSIMRAFPDALDLMLICVESGMSIESAFTRVAGEIGSQSAELAEE
                     LALTTAELSYLPDRRQAFDNLAKRCGHPGVKSVATALNQAEKYGTPLGQALRVTATEN
                     REMRMQEAERKAASLPAKLTVPMIIFFLPCLFVVIMGPAIMQIKAAMH"
     gene            complement(1679..2650)
                     /locus_tag="VNN98_02950"
     CDS             complement(1679..2650)
                     /locus_tag="VNN98_02950"
                     /inference="COORDINATES: protein motif:HMM:NF012694.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system F family protein"
                     /protein_id="HWM61078.1"
                     /translation="MIIMVAILFALALGGAAFAFTGGNEKTQKRVAAVAKPPGSARGR
                     VAAPMQDAAQKRKNVAAMLKDVEKNRAAKKEKPTMRRRLEQAGFPKASPRSFWMICGI
                     VAAMAASLAVATHQPPLVIALAVFVVGLGLPRWVLGFLTARRKKKFTENFAPAIDVIV
                     RSVKTGLPTNEALRIVAREAPNPVGSEFHNLVESLKVGVTLDQALKRMMESMPTPEVG
                     FFAIVMTIQGKSGGNLSEALGNLAAVLRDRKRLQGKIKAMSSEAKASAMIIGSLPPAV
                     MSIIYLTAPSYISKLFTERAGNLMLAGCVLWMSVGIMVMRKMINFKH"
     gene            complement(2647..>3729)
                     /locus_tag="VNN98_02955"
     CDS             complement(2647..>3729)
                     /locus_tag="VNN98_02955"
                     /inference="COORDINATES: protein motif:HMM:NF012652.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CpaF family protein"
                     /protein_id="HWM61079.1"
                     /translation="NDVLGYGPLEPLLARDDIADIMVNGANRVFIEVAGKVQLTNIRF
                     RDNAQLMNICQRIVSQVGRRVDESSPICDARLLDGSRVNVIGPPLSLDGPTLTIRKFK
                     KDKLTLEDLVKFGSISPEAARVLQVIGRCRCNVLISGGTGSGKTTLLSCMTAYIDTEE
                     RVITCEDAAELQLQQPHVVRLETRPPNLEGQGMISMRDLVRNCLRMRPERIIVGEVRG
                     PEAFDLLQAMNTGHDGSMGTLHANSPREAMGRLESMITMGGFSLPMKTIREMIVGSID
                     IIIQAERMRDGSRRITKITEVIGTEGEVVITQDLVTYEIQGEDETGRLKGKHIGTGIV
                     RPNFWERARYYNLEKELANALDKVNQ"
BASE COUNT          713 a         1144 c         1210 g          662 t
ORIGIN      
        1 atcctttggc cgggcccgtc ggccccgcta ttgccgccac ccatgcgccg cgcccgctgc
       61 aattcaagac cgaacgggcc acggcaaaga acgaacccgc cgcgaagccc gaagcgccca
      121 agccggcgcc agtttccacg accggtgtga agagtgcggc cgcccaggcc gaagacctgc
      181 aggcccgggc ggaagccatc gccaaacagt tgaccaacaa gccggctgcc atagccgcag
      241 cgaagacgga ggcgaacaaa gaggtcgcag cgaagacaga ggcgaataaa gccccggcaa
      301 cgcaggccgc ggccaacaag cctgctccgg tggcgcccaa ggtaccggcg ccggtgacga
      361 agaccgcaga ggccaagccc acgcccgtcg cacccgcccc caaggtgctg ccgcccacac
      421 ccatgaaagc agccgatgcc aagcccgcgg cgcagaagac cgccgccaag cccaaggatg
      481 caatccccgg cctgcgcgtg agcaccaacg cttactgagg cagttcaact tcccaaaaca
      541 aaagacgccg gtaactccgg cgcctttttt gtttggctca tttgctcgcc cgcccgttcg
      601 aggggttttg tggcgtgagc aggagcgccg agcgacgtgt acgagacgta cacgagcgat
      661 ggcgcgacga actcacgacg caaaagaccc gaacgggtta atgcatggcg gctttgatct
      721 gcatgatggc cgggcccata atcacgacga acaggcaggg caggaaaaag ataatcatcg
      781 ggacggtgag cttggcgggc agcgaggcgg ccttgcgttc ggcctcctgc atgcgcattt
      841 cgcggttttc cgtggcggtg acgcgcagcg cctggcccag gggggtgccg tatttctcgg
      901 cctggttgag ggcggtggcc accgacttga cgccgggatg gccgcagcgc ttggcgagat
      961 tgtcgaaagc ctgacggcga tcgggcagat agctcagctc ggcggtggtc agcgccagct
     1021 cctcggccag ttcggccgac tggctgccga tttcgcccgc cacgcgggtg aaggcggact
     1081 cgatggacat gccggattcc acgcagatca acatcaggtc cagcgcgtcg ggaaaggcgc
     1141 gcatgatgga ttgctggcgt cgggcgatca tgttgttgac gaacaagtcg ggcagataga
     1201 aaccgatcag ggcgccgaca aaggccaccc tgaccttttc caggggcggc cagctcagat
     1261 gcaggatcag gaacgaatag aacagggtga tgctgaacac cagaaagggc atcacgaaac
     1321 ggaagaacat gaaggtgatc agcggcgcct ggccgcgata gccggcgctg gccagttttt
     1381 cgcgggagtt ttcgccttcc aggatattgc ccagcttgaa gcggtccagg gtggccttca
     1441 tgtaggaggt cggctcgata cgcagcgacc cgcgcttggc attcaaggcg gcatggtgct
     1501 tggcgcgcaa ttcctcgcgg cggcgcgcca ccgacttgag gcggtcatcc agcccgttat
     1561 tttccagcag cggcacgccc agggtcacca cggtggcgaa ggccaggatg ccgacaaaaa
     1621 gcgtcaccag gaagctcttg tcgaacagca ggttcatgaa accgcccatc atcgcctcct
     1681 aatgtttgaa gttgatcatt ttgcgcatca ccatgatgcc gacactcatc cagagcacgc
     1741 agcccgccag cattaggttg ccggcgcgct cggtgaacag cttggagatg taggacgggg
     1801 cggtgagata gatgatgctc atcactgccg ggggcagcga accgataatc atggcgctgg
     1861 ccttggcttc cgacgacatc gccttgatct tgccctgcag gcgcttgcga tcacgcagca
     1921 cggcggccag gttgcccagc gcttccgaca ggttgccgcc cgacttgccc tggatggtca
     1981 tcacaatggc gaaaaaaccc acttccgggg tgggcatgga ttccatcatc cgcttcagcg
     2041 cctggtccag agtgacgccg accttcaggc tttccaccag attgtggaat tcgctgccca
     2101 ccggattggg cgcttcgcgc gccacgatgc gcagcgcctc gttggtgggc aagccggtct
     2161 tgaccgagcg cacgatgacg tcgatggcgg gggcaaaatt ctcggtgaac ttcttcttgc
     2221 ggcgggcggt gagaaagccc agcacccagc gcggcaggcc cagccccacg acgaatacgg
     2281 ccagggcaat caccagcggc ggctggtggg tggcgacagc gagcgacgcc gccatggccg
     2341 cgacgatgcc gcagatcatc cagaaactgc ggggagaggc tttgggaaag cccgcctgct
     2401 ccaggcggcg gcgcatggtg ggcttttctt ttttggcggc gcggttcttt tccacgtcct
     2461 tgagcatggc cgcgacattc ttgcgcttct gggcggcatc ctgcatcggt gcagcgacac
     2521 ggccgcgggc gctgcccggc ggcttggcca ccgcggccac gcgcttctgg gttttttcgt
     2581 taccccccgt gaacgcgaat gccgcacccc caagcgcgag cgcgaacaga atggcgacca
     2641 tgatgatcat tggttgacct tgtccagggc gttggccagt tctttttcca gattgtagta
     2701 gcgggcgcgt tcccagaaat tggggcgcac gatgccggta ccgatatgct tgcccttgag
     2761 gcggccggtt tcatcctcac cctggatttc ataggtcacc agatcctggg tgatcacgac
     2821 ttcgccttcg gtaccgatca cttcggtgat cttggtgatg cggcgcgagc cgtcgcgcat
     2881 gcgttcggcc tggatgataa tatcgatcga gcccacgatc atttcgcgga tggtcttcat
     2941 cggcagtgag aagccgccca tggtgatcat ggattccagg cggcccatgg cctcgcgcgg
     3001 agagttggcg tgcaaggtac ccatcgagcc gtcatggccg gtgttcatcg cctgcagcag
     3061 gtcgaaggct tcgggtccgc gcacttcgcc cacgatgatg cgttcggggc gcatacgcag
     3121 gcagttgcgg accagatcgc gcatcgagat catgccctgg ccttccagat tgggcgggcg
     3181 ggtttccagc cgcaccacat ggggctgttg cagctgaagt tcggcagcgt cttcgcaggt
     3241 gatgacgcgc tcttcggtgt cgatataagc ggtcatgcaa ctcagcaagg tggtcttgcc
     3301 cgaaccggtg ccgcccgaga tcaggacgtt gcagcggcag cggccgatca cctgcagcac
     3361 ccgggccgct tccggactga tggagccgaa cttgaccagg tcttccaggg tcagcttgtc
     3421 tttcttgaac ttacggatgg tcagggtggg accgtccagg ctcagcggcg gaccgatgac
     3481 gttgacgcgg gagccgtcca gcaggcgcgc gtcgcagatg ggcgaggatt cgtcgacgcg
     3541 gcggccgacc tgcgacacga tgcgctggca gatgttcatc agctgggcat tgtcgcggaa
     3601 acggatattg gtgagctgca ccttgccggc gacttcgatg aagacgcggt tggcgccatt
     3661 gaccatgatg tcggcgatgt cgtcgcgcgc cagcagcggt tccaacgggc cgtaacccag
     3721 cacgtcgtt
//
LOCUS       DATMDK010000152         3232 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_3281289,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000152 DATMDK010000000
VERSION     DATMDK010000152.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3232)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3232)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3232
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3281289"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1214
                     /gene="glnT"
                     /locus_tag="VNN98_02960"
     CDS             <1..1214
                     /gene="glnT"
                     /locus_tag="VNN98_02960"
                     /EC_number="6.3.1.2"
                     /inference="COORDINATES: protein motif:HMM:TIGR03105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004356 - glutamine synthetase activity
                     [Evidence IEA];
                     GO_process: GO:0006542 - glutamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="type III glutamate--ammonia ligase"
                     /protein_id="HWM61080.1"
                     /translation="KLVPAQAINAMAKSGAGFAGFATWLDMTPADSDMFVLPDTDSLI
                     QLPWKKDVGWFPGNAVMNGKEVAHAPRNVLRRMIAAAKASGFQMKTGVECEFHLIAAD
                     ASGISDPGDTQAKPCYDQSALMRRYDVIAEICDAMLALGWKPYQNDHEDANGQFEMNW
                     EYDDALVTADRHSFFKFMARSIAEKHGLRATFMPKPFAELTGNGCHTHVSLWKGNKNL
                     FDDPKGELGVSKLGYNFLAGLLANAPALAAISNPTVNSYKRINAPVTLSGATWSPNTI
                     TYTGNNRTHMIRIPEAGRFELRLPDGSANPYLLQAAILAAGLDGIARKADPGKRLDIN
                     MYTDGHTVKGAKKLPLNLLDALRAFGASGLFQEVFGNEFVEAYIKLKTQAWNDYSRHL
                     TKWELDTTLDC"
     gene            1223..2473
                     /locus_tag="VNN98_02965"
     CDS             1223..2473
                     /locus_tag="VNN98_02965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008365064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008115 - sarcosine oxidase activity
                     [Evidence IEA];
                     GO_process: GO:0046653 - tetrahydrofolate metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sarcosine oxidase subunit beta family protein"
                     /protein_id="HWM61081.1"
                     /translation="MRYSAFNLVAQALRGHRHWQPAWRDAAPKPRYDIVIVGGGGHGL
                     ATAYYLAKEHGISNIAVIEKGWIGSGNAGRNTTIIRSNYREPGNIPLYELSMKLWEGL
                     EQDLNYNTMVSQRGVVNLYHSDAQRDAYARRGNMMRIHGVDAELLDEAGIRKHAPFLD
                     FDNARFPIRGGLLQKRGGTARHDAVVWGYARAGDMRGVDIIQNCEVTGLTIEGGVIKG
                     VQTTRGTIGAKKVGLAVAGNSSRLGAMAGLRLPIETCILQAMVTEGIKPLIPGVITFG
                     AGHFYISQSDKGGLVFGGDIDAYKSYAQRGNLPVIEDVCEGGMAIMPMIGRLRVLRQW
                     AGNVDMTMDGSPIIDKTPVEGLYFNGGWCYGGFKATPASGFTFAHLIARDTSHKAAAA
                     LRLDRFSTGHVIDENGQGAQPNLH"
     gene            2490..2765
                     /locus_tag="VNN98_02970"
     CDS             2490..2765
                     /locus_tag="VNN98_02970"
                     /inference="COORDINATES: protein motif:HMM:NF016179.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sarcosine oxidase subunit delta"
                     /protein_id="HWM61082.1"
                     /translation="MRITCPYCGTRDSEEFSIQGEVAGPRPSAPPADALDIEAFHAYV
                     HLRANDFGLTQEYWYHVNGCRRLLVVSRDTRNHAILDVSFASKRGDK"
     gene            2762..>3232
                     /locus_tag="VNN98_02975"
     CDS             2762..>3232
                     /locus_tag="VNN98_02975"
                     /inference="COORDINATES: protein motif:HMM:NF024900.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2Fe-2S iron-sulfur cluster-binding protein"
                     /protein_id="HWM61083.1"
                     /translation="MSRLAKGGLIDRSRLLRFSFDARIYGGFAGDTLASALLASDVTL
                     LGRSFKYHRPRGLFTAGSDEPNALVELRRGARREPNTKATTVELFDGLEAESQNRFPA
                     LKFDLLSVNNLLSPFLTAGFYYKSFMWPASWWEKLYEPAIRRAAGLGRASGQADP"
BASE COUNT          628 a          982 c          991 g          631 t
ORIGIN      
        1 caaagctggt gccggcccag gcgatcaatg ccatggccaa gagcggcgcg ggctttgccg
       61 gcttcgccac ctggctggac atgacgcccg ccgattccga catgttcgtg ttgccggata
      121 cggattccct gatccaactg ccctggaaga aagatgtcgg ctggttcccg ggcaatgcgg
      181 tgatgaatgg caaggaagtg gcgcatgccc cccgcaatgt gctgcgccgg atgatcgccg
      241 ccgccaaggc cagcggcttc cagatgaaga ccggggtgga atgcgaattc catctgatcg
      301 ctgcggatgc gtcgggaatt tccgatcccg gcgataccca ggccaagcct tgctacgacc
      361 agtccgcttt aatgcgccgc tatgacgtga tcgcggagat ttgcgatgcc atgctggcgt
      421 tgggctggaa gccctatcag aacgaccatg aggacgccaa cggccagttc gagatgaatt
      481 gggaatatga tgatgccctg gtcaccgccg atcgccattc ctttttcaaa ttcatggccc
      541 gctccattgc cgagaagcac ggtttgcgcg ccaccttcat gcccaagccc tttgccgaac
      601 tcaccggcaa tggctgccac acccatgtct cgctgtggaa aggcaacaag aatctgttcg
      661 acgaccccaa gggcgaactg ggcgtgtcca agctgggcta caacttcctg gcggggctct
      721 tggctaacgc ccctgcattg gcggcgatca gcaaccccac ggtcaatagc tacaagcgca
      781 tcaatgcgcc ggtgaccttg tcgggcgcga cctggtctcc caacaccatt acctataccg
      841 gcaacaaccg cacccacatg atccgcattc ccgaggcggg acgtttcgag ttgcggctgc
      901 cggacggcag cgccaatcct tatctgttgc aggcggcgat cctggcggcg ggactggacg
      961 gcatcgcccg caaggcggat cccggcaagc ggctggacat caatatgtac accgacggcc
     1021 atacagtgaa gggcgccaag aagcttcccc tcaacctgct ggacgcgctg cgcgccttcg
     1081 gcgcttccgg cctgttccag gaagttttcg gcaatgaatt cgtcgaagcc tatatcaaac
     1141 tcaagaccca ggcgtggaac gattactcac gtcatctgac caaatgggaa ttggatacga
     1201 ccctggattg ctaagggcag cgatgcgcta ttccgctttc aatcttgtgg cgcaggcttt
     1261 gcgcggtcat cgccattggc agcccgcctg gcgcgatgcc gcgccaaagc cgcgctatga
     1321 catcgtgatt gtgggcggcg gcggccatgg cctggccacc gcctattatc tggccaagga
     1381 acatggaatt tccaacatcg cggtgatcga aaagggttgg atcggttcgg gcaatgccgg
     1441 gcgtaacacc accatcatcc gctccaatta ccgcgagccg ggcaatatcc ccctctatga
     1501 actctcgatg aaattgtggg aggggctgga gcaggacctc aattacaaca ccatggtcag
     1561 ccagcggggc gtggtgaacc tgtatcattc cgacgctcag cgcgacgcct atgcccggcg
     1621 cggcaacatg atgcggattc acggcgtcga tgccgagttg ctggacgagg cgggcatccg
     1681 caagcacgcg ccttttttgg atttcgacaa tgcccgcttt cccattcgcg gcgggttgct
     1741 gcagaagcgc ggcggcaccg cgcggcatga cgcggtggta tggggttatg cccgcgccgg
     1801 cgatatgcgc ggcgtggata tcatccagaa ttgcgaagtc accggcctga cgatcgaagg
     1861 tggcgtgatc aagggcgtgc aaaccacacg cggcaccatc ggcgccaaaa aggtcgggtt
     1921 ggcggtggcg ggcaattcct cacgcctggg cgccatggcg ggcctgcggc tgcccatcga
     1981 gacctgcatc ttgcaggcaa tggtgacgga aggcattaag ccgctgatcc cgggcgtcat
     2041 caccttcggc gcgggacatt tctacatcag ccagtcggac aagggcggtt tggtgttcgg
     2101 cggcgatatc gatgcctaca aatcctatgc ccaacgcggc aacctgccgg tgatcgagga
     2161 tgtctgcgaa ggcgggatgg cgattatgcc gatgatcggg cgcctccggg tgttgcggca
     2221 atgggccggc aatgtcgaca tgaccatgga cggctcgccg attatcgaca agacaccggt
     2281 ggagggtctc tatttcaacg gcggctggtg ctatggcggc ttcaaggcaa cgccggcttc
     2341 cggcttcact ttcgcccatc tgatcgcgcg cgacaccagc cacaaggctg ccgccgcgct
     2401 gcgcctggac cgtttttcta ccggccatgt gattgacgaa aacggccagg gcgcgcagcc
     2461 caatctgcat tgaaggcaaa ggagcgttga tgagaattac ctgcccctat tgtgggacgc
     2521 gcgatagcga ggaattctcc attcagggag aggtcgctgg cccgcgcccg tccgcgccgc
     2581 cggccgatgc gctcgatatc gaagcgttcc acgcctatgt tcatctgcgc gccaacgatt
     2641 tcgggttgac gcaggaatat tggtatcacg tcaatggctg ccgccggctg ctggtcgttt
     2701 cgcgcgatac gcgcaatcac gcaattttgg atgtgagttt cgcttccaaa cgcggggata
     2761 aatgagcagg ttggccaaag gcggccttat tgaccgtagc aggctgctgc gcttttcgtt
     2821 cgatgccaga atctatggcg gttttgcggg agacacgctt gcttccgctc tgctggcaag
     2881 tgacgtgacg ctgctggggc gttccttcaa ataccatcgc ccccgcgggc tattcaccgc
     2941 agggtcggac gagccgaatg cgctggtcga actgcggcgc ggggcgcggc gcgagcccaa
     3001 caccaaggcc accacggtcg agttgttcga cgggctggag gcggaaagcc agaatcgctt
     3061 tccagccctg aaattcgatc ttctgtcggt caacaatctg ctgtcgccct tcctgacggc
     3121 cggcttctac tacaaaagct tcatgtggcc ggcctcttgg tgggagaaac tctacgaacc
     3181 ggccatccgc cgcgccgccg gccttggccg ggccagcggc caggctgacc cc
//
LOCUS       DATMDK010000153         2406 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1904046,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000153 DATMDK010000000
VERSION     DATMDK010000153.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2406)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2406)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2406
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1904046"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..901)
                     /locus_tag="VNN98_02980"
     CDS             complement(<1..901)
                     /locus_tag="VNN98_02980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004279676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase family protein"
                     /protein_id="HWM61084.1"
                     /translation="MAHNNGMVPRGRPKGMSDNAAKFQAAVTPEAEPAIDPAYQTVPI
                     SQFTPHRPALPEKSEGGKRFKLVSDYEPAGDQRMAIPELVAGVNAAERDQVLLGVTGS
                     GKTFTMAKIIEATQRPALILAPNKTLAAQLYSEFKTFFPENAVEYFVSYYDYYQPEAY
                     IPAGDVYIEKEATINEELDKLRLSATRSLFERRDCIIVSSVSCIYGLGSPEAYYGMLL
                     LLEKGQRIKREDITRRLVEILYERNDSDFRRGTFRVRGDVIEVFPTYDENAYRIELFG
                     DEIDGLSQIDPLFGSVRQKYSRLP"
     gene            1023..1571
                     /locus_tag="VNN98_02985"
     CDS             1023..1571
                     /locus_tag="VNN98_02985"
                     /inference="COORDINATES: protein motif:HMM:TIGR00645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00645 family protein"
                     /protein_id="HWM61085.1"
                     /translation="MHRRNLLETVLEQALFKSRWLLAPFYLGLVVSLAMLLAAFAAEL
                     IHAVPNAMRLSEVDSEKVILAVLGLIDLSLAGNLVVIVIFSGYENFVSKIHTENAEDR
                     PSWMGTLDFSGLKMKLIGSIVAISAISLLRAFMTLTEHDVPVDEPRLRWMLMLHLTFV
                     ASGLLFAAMDWIGNRAEKPKEH"
     gene            complement(1626..2009)
                     /locus_tag="VNN98_02990"
     CDS             complement(1626..2009)
                     /locus_tag="VNN98_02990"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61086.1"
                     /translation="MKKLLLLAAAAAFVATPALADLSAELSVGQTHAGMAATQTDVAM
                     VHTHLQHALNCLVGPTGAGFDAGHGNPCAKAFGGGAIADATSPAQKAKLEAAAASAKD
                     GIASADLAAAQKSAQATADGIGAAK"
     gene            complement(2107..>2406)
                     /locus_tag="VNN98_02995"
     CDS             complement(2107..>2406)
                     /locus_tag="VNN98_02995"
                     /inference="COORDINATES: protein motif:HMM:NF016269.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YSC84-related protein"
                     /protein_id="HWM61087.1"
                     /translation="LQQAELVFIINSRRALRGIEKGELKLGAGAGITVVTLSGGAEGA
                     TTVHGGDIVVWTSGTGAYAGLTFNGTVIKQDKDANAVPATGREAQALRRNLTSIW"
BASE COUNT          400 a          688 c          829 g          489 t
ORIGIN      
        1 tggggaggcg ggagtacttc tggcggacgc tgccgaagag gggatcgatc tgcgagagcc
       61 cgtcgatctc gtcgccgaag agctcgatgc ggtaggcgtt ttcgtcgtag gtggggaaga
      121 cttcgatgac gtctccacgg acgcggaagg tgccgcgacg gaagtcggag tcgttgcgct
      181 cgtagaggat ctcgacgaga cggcgcgtga tgtcttcacg cttgatcctc tgtcccttct
      241 ccaggaggag gagcatgccg tagtaggctt ctggcgagcc gagtccgtag atgcaggaga
      301 cggaggagac gatgatgcag tcgcggcgct cgaagaggga acgcgtggcg gagaggcgga
      361 gcttgtcgag ctcctcgttg atggtggctt ccttttcgat ataaacgtca ccggcgggga
      421 tgtaggcttc gggctggtag taatcgtaat agctgacgaa atactccacc gcgttttccg
      481 ggaagaaggt tttgaactcg ctatagagct gcgccgccaa tgttttgttg ggcgccagga
      541 tcagggcggg gcgctgggtg gcctcgatga tcttggccat ggtgaaggtt ttgcccgaac
      601 cggtgacgcc cagcagcacc tggtcgcgct cggcggcatt cacccccgcg accagttccg
      661 gaatcgccat gcgttggtcg cccgccggtt catagtcgct aaccagcttg aaccgcttgc
      721 cgccctcgga tttttccggc agcgccgggc ggtggggcgt gaactggctg atcggcaccg
      781 tctgataggc cggatcgatc gccggctcgg cttcgggcgt caccgccgcc tggaacttgg
      841 cggcattatc cgacatgcct ttggggcgcc cgcggggaac catgccgtta ttgtgggcca
      901 tggccctaat ataaggcgcg ttccggattt gtgcagggct ttcgtcctgt tccgggcctg
      961 atttatagat agggaataga ggcgcgccgg ccttgcggcg agcaaccaca aatggggctg
     1021 ccatgcatcg acgcaacttg ctggaaacgg tgctggaaca ggcgcttttc aaatcgcgct
     1081 ggctgttggc gcctttttac ctgggcctgg tggtgtcgct ggcgatgctg ctggccgcct
     1141 ttgccgccga attgatccat gccgtgccca acgccatgcg gctgagcgag gtcgattccg
     1201 aaaaggtgat cctggcggtg ctggggctga tcgacctgtc gctggccggc aacctggtgg
     1261 tgatcgtgat cttctccggc tacgagaatt ttgtctccaa gatccacacc gagaatgccg
     1321 aggatcgtcc cagctggatg gggactttgg atttctccgg cctgaagatg aagctgatcg
     1381 gcagcatcgt ggcgatcagc gccatctcct tgttgcgcgc ctttatgacc ttgaccgaac
     1441 acgacgtgcc ggtggacgag ccgcgcctgc gctggatgct gatgctccac ctgaccttcg
     1501 tggcgtccgg cctgctgttc gccgcgatgg attggattgg gaacagagcc gagaaaccca
     1561 aagaacactg aacgcaaaaa gggcggcccg agagccgccc ttttttattc cagatttaga
     1621 tgatgctact tggcagcgcc gataccgtcg gcggtggcct gcgcactctt ctgggcggcg
     1681 gcgaggtcgg ccgaggcgat gccgtccttg gcgctggcgg cagccgcttc cagcttggcc
     1741 ttctgggccg ggctggtggc gtcggcaatt gcgccgccgc caaaggcctt ggcgcaggga
     1801 ttgccgtggc cggcgtcaaa gccggcgccg gtggggccga ccaggcagtt cagggcatgc
     1861 tggagatggg tatgcaccat ggcgacgtcg gtctgggtgg cggccatgcc ggcatgggtc
     1921 tggccgaccg aaagttcggc cgacagatcg gccaaggcgg gggtggcaac aaaggcggcg
     1981 gcggcggcaa gcaggagcag tttcttcatg ggggcttcct ctatctgaca aaagaattgg
     2041 ggcgcacggg ttgtcccatg cgccccaaag cttactccaa atacgggctg ttgccagccg
     2101 gctgacctac cagatactgg tcaggttgcg gcgcagcgcc tgggcttccc ggccggtggc
     2161 ggggaccgca ttcgcgtcct tgtcctgctt gatgaccgtg ccgttgaagg tcaggccggc
     2221 ataagcgcct gtgcccgagg tccagaccac gatgtcgccg ccatggacgg tggtggcgcc
     2281 ttccgcgccg ccggacaggg tgaccaccgt gatgccggcg ccggcgccca gcttcagctc
     2341 gcctttttca atgccgcgca gggcgcgcct ggaattgatg atgaagacca gctccgcctg
     2401 ctgcag
//
LOCUS       DATMDK010000154         2139 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_70140,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000154 DATMDK010000000
VERSION     DATMDK010000154.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2139)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2139)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2139
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_70140"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1763
                     /locus_tag="VNN98_03000"
     CDS             <1..1763
                     /locus_tag="VNN98_03000"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HWM61088.1"
                     /translation="GFLATMSHEIRTPMNGVLGMGRLLLETDLRPEQRTYAEAITQSG
                     EALLALIGDILDFSKIEAGMLHLDEDEVDLRLMLSGVAELLCPRSHGKGVEVTAIIAP
                     DVPLVIRADEGRLRQVITNLMGNAVKFTEVGGVCVEIKPAGDMLRFEVRDTGVGVPPA
                     KRQEIFQEFVQADTSHARKFGGTGLGLAISKKLVDTMGGEIGVDATPPLLGESGGSCF
                     WFTLPAKVVAPAEDGKPLAGMRVAVMSKNKALREGLYLQIAASGGIPADPKSLADAIL
                     IDAGTGNIPELTVHPDPAIPALVLLTPAARGSLEEMRALGFAGYLVKPVRQSSLVARL
                     ILSYDGRPLVAPLEASHPQQTAAAEGELPPLITPPAPEMPVENFRIAPPPVPALVDAP
                     DFDPPAIPAPFMEDHPVAARSVGPAMARTPSAEGYSMVAPAPGADAPDYLIARKARGA
                     DASGLHILLAEDNPINMMLIRELLRRRGHRVTEVTTGTAAAQALLENRYDLLLTDIHM
                     PGMDGIEAARAIRAGEARTGRARTPIVALTADALDGGKRICQEAGMDGFLTKPVDPAE
                     LEEMFLMLFPSEERSHIVAA"
     gene            1760..>2139
                     /locus_tag="VNN98_03005"
     CDS             1760..>2139
                     /locus_tag="VNN98_03005"
                     /inference="COORDINATES: protein motif:HMM:NF024402.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61089.1"
                     /translation="MTTKRKRYTVRDYLNARVLTMLALGFSSGLPFLLVGNTFGFWLS
                     DEGTSLTAIGFISWVGLAYTLKFLWSPLLDRLDIPGLAWLGRRRGWMAASQIVVGAGL
                     ACMALSGTAHGLVLLGALALVVAFG"
BASE COUNT          340 a          711 c          701 g          387 t
ORIGIN      
        1 ccggcttcct ggccaccatg agccatgaga tccgcacccc catgaacggc gtcttgggca
       61 tgggccgcct gctgctggaa accgatcttc ggcccgaaca gcgcacctat gccgaggcca
      121 tcacccaatc gggcgaagcg ctgctggcgc tgatcggcga cattctggat ttttccaaga
      181 tcgaagcggg gatgctgcat ctggatgagg acgaggtgga cctgcgcctg atgctgtctg
      241 gggtggccga acttctgtgc ccgcgcagtc atggcaaggg cgtggaggtc actgccatca
      301 ttgcccccga cgtgccgctg gtcatccgtg ccgacgaagg ccgcctgcgc caggtgatca
      361 ccaatctgat gggcaacgcc gtcaagttca cggaagtcgg cggggtctgt gtcgagatca
      421 agccggccgg cgacatgctg cgctttgaag tacgcgacac cggggtgggc gtgccgcccg
      481 ccaagcgcca ggagattttc caggaattcg tccaggccga taccagccat gcgcgcaagt
      541 tcggcggcac cggattggga ctggctatct ccaagaagct ggtggacacg atgggcggcg
      601 agatcggcgt ggatgccacg ccacccctgc tgggcgagtc gggcggctcc tgcttctggt
      661 tcaccttgcc cgccaaggtg gtcgcgcccg cggaagacgg caagccgctg gccggcatgc
      721 gcgtggcggt gatgagcaag aacaaggcgc tgcgcgaagg cctgtatctg cagatcgccg
      781 cgtccggcgg cattcccgcc gaccccaaga gtctcgccga tgccatcctg attgatgccg
      841 gcaccggtaa tattccagag ttgacggtgc atcccgatcc cgccatcccg gccttggtgc
      901 tgctgacacc tgccgcgcgg ggcagcctgg aagagatgcg cgcgctgggc tttgccggct
      961 atctggtcaa gccggtgcgc cagtcctcgc tggtggcgcg gctgatcctg agttacgacg
     1021 gccgcccgct ggtggcgccg ctggaagcgt cacatccgca gcaaaccgcc gcggccgaag
     1081 gcgaactgcc gccgctgatc acgccgccgg cgccggaaat gccggtggag aatttcagaa
     1141 ttgcccctcc gcccgttccg gctcttgtcg acgcacccga cttcgatccg cccgccattc
     1201 ccgcgccctt catggaagat catcccgttg ccgcgcgcag cgtcggacct gcgatggcac
     1261 ggacgccatc agcggaaggt tattcaatgg tcgctcccgc cccgggcgcg gacgcgcccg
     1321 attatttgat tgcgcgcaaa gcgcgcgggg cggacgcttc cggcctgcac atcctgttgg
     1381 ccgaggacaa tcccatcaac atgatgctga tccgcgaatt gctgcgccgc cgcggccacc
     1441 gcgttaccga agtcaccacc ggcactgccg ccgcgcaggc gctgctggag aatcgctacg
     1501 acctgttgct taccgacatc catatgcccg gcatggacgg catcgaagcg gcgcgcgcca
     1561 ttcgcgccgg cgaagcgcga accgggcgtg cccgcacgcc catcgtggcc ttgaccgccg
     1621 acgcgctgga cggtggcaag cgtatctgcc aggaagccgg gatggacggt ttcctcacca
     1681 agccggtgga ccccgccgag ctggaggaaa tgttcctgat gctgttccct agcgaggagc
     1741 gttcgcatat cgtcgcggca tgaccacaaa gcgcaagcgc tacaccgtcc gcgattatct
     1801 gaacgcgcgc gtgctcacca tgctggcgct gggtttctct tccggcctgc ccttcctgct
     1861 ggtgggcaac actttcggct tctggctgag cgatgaaggc acctcgctca ccgccatcgg
     1921 tttcatctcc tgggtggggc tggcctatac actgaagttc ctctggtcgc cgctgctgga
     1981 ccggctggac attcccggcc ttgcctggtt ggggcgacga cgcggctgga tggcagcatc
     2041 ccagatcgtt gttggcgcgg gccttgcctg catggccctg agcggcaccg cgcacggcct
     2101 tgtgctgctg ggcgcgttgg cgctggtggt ggcgttcgg
//
LOCUS       DATMDK010000155         3150 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2124385,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000155 DATMDK010000000
VERSION     DATMDK010000155.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3150)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3150)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3150
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2124385"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..891
                     /locus_tag="VNN98_03010"
     CDS             <1..891
                     /locus_tag="VNN98_03010"
                     /inference="COORDINATES: protein motif:HMM:NF019157.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tannase/feruloyl esterase family alpha/beta
                     hydrolase"
                     /protein_id="HWM61090.1"
                     /translation="QALTATPESFLTRDKLKLAEAEAIKQCGDEDGVIEDPLACRFRP
                     EKVRCTAGDAPACLTDAQIASLRKIYGGPKNPRTGEKLISGFSPGGEGEDNGWDRWIT
                     GATPDGKSALIYQFSSNFFSNIVFTDPAYDLHRLNFDADIAMTDAKTAATFNSYDPDL
                     SAFRARGGKLIQYHGWADPAIPALDSIDYYRLVQEKMGPTGNFYRLFMAPGMLHCAGG
                     PGPNIIATLPAITAWVEQSKAPDLLVATKYRDNDPAQPALRTRPLCVFPARAQWDGKD
                     DKTRLESFRCRAPGKTSGKT"
     gene            921..2309
                     /locus_tag="VNN98_03015"
     CDS             921..2309
                     /locus_tag="VNN98_03015"
                     /inference="COORDINATES: protein motif:HMM:NF028172.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyl hydrolase family 79 C-terminal
                     domain-containing protein"
                     /protein_id="HWM61091.1"
                     /translation="MLAASAALPFASSAARGANSVSIKLDPQHRLRTIPADYMGLGFE
                     ASSVAMNLLSADNHAYVQLVRNLGRQGVIRVGGNVSDFSVYDAKGAAKSLPKDTVLNA
                     ENFRQLRTFLDVTGWKLIWGLNLGTGTMDNAVEEARAVMGAVGERLLALEIGNEPDLF
                     ARAGHRSGTWDYDHWHGEYRRFAAAIRAALPHAPFAGPDIAGGTIDWMENFARDEGGD
                     IALLTAHHYITGQVNPAATIEMMLQEEKKYQPVLAKFQSIAGAAHLPWRMCETASFSG
                     GGKAGVSDTFAAALWALDYLFVLASYGCSGVNMQTGVNHLGWISKYTPISDDLTGHYS
                     TAPEYYGLLAFAEAAKGEQIAVACEAGGINLTAYATRQKSGAMTLTVINKDQSRDAAV
                     EVTGVAPGKAQVMRLVAPSLTAMSGVHLGGATVAGDGSWTDGKADPVKVANGKALLDV
                     PAGSAALIALIA"
     gene            2310..2750
                     /locus_tag="VNN98_03020"
     CDS             2310..2750
                     /locus_tag="VNN98_03020"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61092.1"
                     /translation="MTPKQALVFVKKHGVVLASAKGPVPRMTEIIAGETIKASWWAHA
                     KSRQIYAVLRSLENDPDILVCRLVGGKVSFVHRRLWPALIRAAKNFPAEHLAQQHDEH
                     TKAGHHVGRSVKFPKWADKKTLAQARDLSEQDALAMLGAWASPR"
     gene            complement(2781..>3150)
                     /locus_tag="VNN98_03025"
     CDS             complement(2781..>3150)
                     /locus_tag="VNN98_03025"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61093.1"
                     /translation="RRIPGADLAQIIAISLTAIYEYADNHPGVLRAAMTDQMVIDADG
                     VEVLPLLMQWGMEWAEMVRELARDGGACASYDADIIGQAIVGALHQASRECHSAGRCR
                     ETLVKNLTRFLTRALKPDQN"
BASE COUNT          609 a         1035 c          982 g          524 t
ORIGIN      
        1 caagcgctga ccgcgacacc tgaaagtttc ctcacgcggg acaagctcaa gctggccgag
       61 gccgaagcaa taaaacagtg cggtgacgaa gacggcgtga tcgaagaccc gctcgcctgc
      121 cgtttccgtc cggagaaagt ccgctgcact gcgggcgatg cgccggcctg cctgaccgat
      181 gcccagatcg ccagcttacg caaaatctat ggcggcccca aaaatccgcg caccggcgaa
      241 aagctgatct ccggtttctc gcctggcggc gaaggcgagg acaatggctg ggaccgctgg
      301 atcaccggcg ccacacccga cggcaagagc gcgctgatct atcagttcag cagcaacttc
      361 ttcagcaaca tcgttttcac cgatcccgct tacgacctgc accggctgaa cttcgacgcc
      421 gacatcgcca tgaccgacgc caagaccgct gcgacattca acagttacga ccccgacctt
      481 tcggcgttcc gcgcccgcgg cggcaagctg atccagtatc atggctgggc cgaccccgcg
      541 atcccggcgc tggattcgat cgactattac aggctggtcc aggagaagat gggaccgacc
      601 ggcaatttct atcgcctgtt catggcgccc ggcatgctcc attgcgccgg cggccccggc
      661 cccaatatca tcgccaccct gccggccatc acggcctggg tggaacagag caaggcgccc
      721 gatctgttgg tcgcgaccaa ataccgggac aacgatccgg cccagccggc cctgcgcacg
      781 cgcccgctct gcgttttccc ggcgcgcgcg caatgggacg gcaaggacga caagacaagg
      841 ctggaaagtt tccgctgccg ggcgcccggc aagacatcag gcaagacatg atgcggccat
      901 tgggcatctc acgcagaacc atgctggcag cttcggcggc gcttcccttc gcgtctagcg
      961 cagcgcgcgg cgcgaattcc gtatccataa agctcgatcc gcagcaccgc ctgcgcacga
     1021 tcccggccga ctatatgggc ctgggctttg aagcatcatc agtggcgatg aacctgctgt
     1081 ccgccgacaa ccacgcctat gtccagctgg tgcgtaacct cggacggcag ggcgtgatcc
     1141 gcgtcggcgg caatgtctcc gatttttccg tctacgacgc caagggcgca gccaaatccc
     1201 tgcccaagga taccgtgttg aacgcagaga acttccgcca gctgcgcacg ttcctggacg
     1261 tcaccggctg gaaactgatc tggggcctca atctgggcac cggcaccatg gacaatgcgg
     1321 tggaggaagc ccgcgcggtg atgggcgcgg tgggcgagcg gctgctggcg ctggagatcg
     1381 gcaacgagcc cgacctgttc gcgcgcgccg gccatcgcag cggcacctgg gattatgacc
     1441 attggcatgg cgaataccgc cgctttgcgg cggccatccg cgccgccctg ccgcatgcgc
     1501 ccttcgcagg accggacatc gcgggcggca cgatcgactg gatggaaaac ttcgcccgtg
     1561 acgaaggcgg cgacatcgcg cttctgactg cgcatcacta catcaccggc caggtcaatc
     1621 ccgccgccac gatcgagatg atgctgcagg aggaaaaaaa gtatcagccg gtgctggcaa
     1681 agtttcagtc catcgcaggt gccgcgcatc tgccgtggcg gatgtgcgaa accgcctctt
     1741 tttccggcgg cggcaaggct ggtgtcagcg ataccttcgc cgccgcctta tgggcgctgg
     1801 attatctgtt cgtgctggcc tcttacggct gcagcggcgt caatatgcaa accggcgtca
     1861 atcacctggg ctggatcagc aagtacacgc cgatcagcga cgacctgacc gggcattaca
     1921 gcacggcgcc ggaatattac ggcttgctgg ccttcgcgga agccgccaag ggcgagcaga
     1981 tcgcggtcgc ttgcgaagcg ggcggcatca atctcaccgc ctacgccaca cggcaaaaat
     2041 ccggcgcgat gaccctgacc gtgatcaaca aggatcaaag ccgcgacgcc gcggtggaag
     2101 tgaccggcgt tgcgcccggc aaggcgcaag tcatgcgcct ggttgcgccg tcgctaaccg
     2161 caatgagcgg cgtgcatctg ggcggcgcca cggtagcggg cgacggaagc tggacggacg
     2221 gcaaggccga cccggtcaag gtggcgaacg gcaaggccct gctggatgtg cccgccggca
     2281 gcgcggcact gatcgctttg atcgcttgaa tgacacccaa acaggcgctc gtttttgtaa
     2341 agaagcacgg cgtggttttg gcctccgcca agggaccggt cccgcgcatg acggaaatca
     2401 tcgcgggcga aacgatcaag gcaagctggt gggcccatgc caaatcacgc cagatctacg
     2461 cggttctccg cagcctggag aacgatcccg acatcctggt ctgccgtctt gtcggcggca
     2521 aggtgagctt cgtgcatcgc cggctctggc cggccctcat ccgcgccgcg aagaacttcc
     2581 cagctgagca tctggcgcaa cagcatgacg aacacactaa ggccgggcat cacgtcggcc
     2641 gcagcgtgaa gtttcccaag tgggcggaca aaaagacctt ggcacaggca cgcgacctca
     2701 gcgaacagga cgccctcgcg atgctgggcg cctgggcatc gccacgctga tccggatagg
     2761 tgatcaccgg ctttttgatt tcagttctgg tccggcttca gcgcgcgggt gaggaagcgg
     2821 gtgaggtttt tcaccagcgt ctcgcggcaa cgcccggcgc tatggcattc ccggctggcc
     2881 tggtgcagcg ccccgacaat ggcctggccg atgatgtcgg cgtcatagga ggcacaggcg
     2941 ccgccgtccc gggccagttc gcgcaccatc tcggcccatt ccatgcccca ttgcatcagc
     3001 agcggcagca cctccacccc gtcggcgtcg atcaccatct ggtcggtcat ggcggcgcgc
     3061 aacacgccgg gatggttgtc ggcatattca tagatcgccg tcaggctgat ggcgatgatc
     3121 tgcgccagat cggcgccggg aatgcggcgg
//
LOCUS       DATMDK010000156         2125 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1678232,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000156 DATMDK010000000
VERSION     DATMDK010000156.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2125)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2125)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2125
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1678232"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(96..419)
                     /locus_tag="VNN98_03030"
     CDS             complement(96..419)
                     /locus_tag="VNN98_03030"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61094.1"
                     /translation="MTKDEITTWALANGWQMIDGVPCLTKPAAPHPAIVRLVLKATVA
                     SVEIKKPAGKWEKVASESYSKIEADPETGMPGSLGFTTISGLTLLMRDNKDRQMFARM
                     GGMKR"
     gene            complement(439..1611)
                     /locus_tag="VNN98_03035"
     CDS             complement(439..1611)
                     /locus_tag="VNN98_03035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008036467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HWM61095.1"
                     /translation="MTWDVVVIGAGAAGMMCAAVAGRRGRKVLVLESAKAPGEKIRIS
                     GGGRCNFTNRHASPAQFLSANPHFCISALSRYTQNDFIALVDRYGIRWHEKTLGQLFC
                     DGSAVQIVDMLLAEMKEAGVRLNAKVQYVEKTEPGFTLQLSSGDILECSALVVATGGK
                     SIPKMGATDFGYRLAEQFGVRLTQTRPALVPLTFDGELLEQLSALSGVAVPARVRCGK
                     VSFDEALLFTHRGLSGPAILQISSYWREGEEIVIDLLPGTDVLDALRAARQQNGKLSL
                     HNFLATLLPRRLAKEIADTFDYAGTLGGQPGEKLRTLAAQVNDWRIGPAGTEGYRTAE
                     VTLGGIDTRDLDSKTMQARSVPGLYFIGEVVDVTGWLGGYNFQWAWSSGWCAGQAV"
     gene            complement(1656..>2125)
                     /locus_tag="VNN98_03040"
     CDS             complement(1656..>2125)
                     /locus_tag="VNN98_03040"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61096.1"
                     /translation="AAAISYPGFDAKNKASTDPLAGISSRPDFVGAIYPGPSLFTPSA
                     VVKGGTPPIPKDAPPSFIAGAGWQDKVHAVWADEYFSAMLNAGIPNVEMHIYARGKHG
                     GGLTYRDFTGEGTWQDRFIHWLRDLGFFEKPGVETLAAKDVAAFVAQPAAAKP"
BASE COUNT          402 a          676 c          656 g          391 t
ORIGIN      
        1 gggcgacggc tcgctgcgct cgcctgcccg atgctccgcg ggattttcgc cccctcttta
       61 tccctacttt ccgaaaaaga tagagaaacc cgaaatcagc gcttcatacc gcccatgcgc
      121 gcgaacattt ggcggtcctt attgtcccgc atcagcaggg tcaggccgga aattgtggtg
      181 aaaccgaggc tgcccggcat gccggtttcc gggtcggctt cgatcttgga atagctctcg
      241 ctggcgacct tttcccactt tcccgcaggt ttcttgatct cgacgctggc gacggtggcc
      301 ttcagcacca gccgcacgat ggcgggatgc ggggcggcgg gtttggtcag gcagggaacc
      361 ccgtcgatca tctgccagcc attggccagc gcccaggtgg tgatttcgtc cttggtcatg
      421 gcggcagtag agcagagttc aaacagcttg tcccgcgcac cagccggacg accaggccca
      481 ttggaaattg tagccgccca gccagccggt gacgtccacc acctcgccga tgaaatagag
      541 gccaggcacg gatctggcct gcatggtttt tgagtccagg tcgcgcgtgt cgataccacc
      601 cagggtgacc tcggcggtgc ggtaaccttc ggtgccggcg ggaccgatgc gccagtcatt
      661 gacctgcgct gccagtgttc gcagtttttc tcccggctgg ccgcccaggg tgccggcata
      721 atcgaaagta tcggcgatct ccttcgccag ccgccgcggc aagagagtgg caaggaaatt
      781 gtgcagcgac agttttccgt tctgctggcg cgcggcgcgc aacgcatcca acacatcggt
      841 tcccggcagc aggtcgatga cgatttcttc gccttcgcgc cagtaagacg aaatctgcag
      901 gatcgccgga ccgctgagac cgcgatgggt gaacagcaac gcttcgtcga agctgacctt
      961 gccgcaccgc acccgcgccg gaaccgcgac gccggaaagc gcgctcaact gttccagcaa
     1021 ttcgccgtca aaagtcagcg gcaccagtgc gggcctggtt tgcgtcagcc gcaccccgaa
     1081 ttgctccgcc aagcgatagc cgaaatccgt cgcgcccatc ttgggaatgg acttgccgcc
     1141 cgttgccacc accagcgcgc tgcattcgag tatgtcgccg gacgacaatt gcagggtgaa
     1201 tccgggctcg gtcttttcga catactgaac cttggcgttc aggcggacac ccgcctcttt
     1261 catctcggcc agcagcatat cgacgatctg gaccgccgag ccgtcgcaga acagttggcc
     1321 cagggtcttc tcatgccagc ggatgccata gcggtcgacc agggcgataa aatcattctg
     1381 cgtatagcgg ctgagcgcgg agatgcagaa atgcggattg gccgaaagga attgcgccgg
     1441 cgaggcatgc cggttggtga aattgcagcg cccgccgccg gagatgcgga ttttctcgcc
     1501 cggcgccttg gcggattcca gcaccagcac tttgcggccg cgccggcccg caacggcggc
     1561 gcacatcatg cccgccgcgc cggcgccgat aacgaccaca tcccatgtca tgaccgggtt
     1621 atgccggtct caggcgcaaa agaacaggaa gggacctagg gcttcgcagc ggccggctgc
     1681 gctacgaaag cggcgacatc cttggccgcc aaggtttcca caccgggttt ctcgaagaaa
     1741 cccagatcgc gcagccagtg gataaagcgg tcctgccaag tgccttcgcc ggtgaaatcg
     1801 cgataggtca gcccgccgcc atgcttgccg cgcgcataga tgtgcatctc cacgttggga
     1861 atgccggcat tcagcatcgc cgagaaatat tcgtccgccc acacggcatg gaccttgtcc
     1921 tgccagcccg cgccggcgat gaaggacggc ggcgcgtcct tggggatggg cggcgtgccg
     1981 cccttaacaa ccgctgatgg ggtaaacagc gacgggccgg gatagatggc gccgacgaaa
     2041 tcgggacgcg aactgatgcc tgccaacgga tcggttgagg ctttgttctt ggcgtcgaag
     2101 ccgggatagg aaatcgccgc cgcca
//
LOCUS       DATMDK010000157         3137 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2125072,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000157 DATMDK010000000
VERSION     DATMDK010000157.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3137)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3137)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3137
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2125072"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..964
                     /gene="prfB"
                     /locus_tag="VNN98_03045"
     CDS             <1..964
                     /gene="prfB"
                     /locus_tag="VNN98_03045"
                     /inference="COORDINATES: protein motif:HMM:TIGR00020.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="peptide chain release factor 2"
                     /protein_id="HWM61097.1"
                     /translation="ERQKLDSSLSAVTRLTNELADATQLIEMAEAENDAAMVADAENS
                     LLALNKRAEQMRLESMLSGEADGNDSYIEIHAGAGGTESQDWASMLLRMYTRWAERHN
                     YKLQLIEESEGEGAGIKSTTLLVKGENAYGWLKTEAGVHRLVRISPFDSNARRHTSFS
                     SVTVYPVLDQSIDIDIPEKDVRIDVYRASGAGGQHVNKTESAVRITHLPTNIAVASQS
                     ERSQHQNRAICWDMLKSKLYEIELEKKKAETGAFVGEKKEIGWGHQIRSYVLQPYQLV
                     KDLRTGVESRTPSDVLDGALDPFMAAALAQEVGGKPKEKIEDLE"
     gene            complement(1141..1701)
                     /locus_tag="VNN98_03050"
     CDS             complement(1141..1701)
                     /locus_tag="VNN98_03050"
                     /EC_number="3.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013053.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine hydrolase family protein"
                     /protein_id="HWM61098.1"
                     /translation="MSFVPPDGAVLLLIDLQRGIDHPDWGIRNNPGAEKEAVWLLTHW
                     RARQWPLIHIRHDSTEPKSHYRPGQPGHDFKPQTAPLPGESVIPKRTNSAFIGTGLEA
                     RLRDAGHTALVVAGVSTNNSVEATVRMAGNLGFATWLVEDACFTFGRKDWNGTPRSAE
                     EVHAMTLANLGGEYCSVTTTDAVLGK"
     gene            complement(1698..2228)
                     /locus_tag="VNN98_03055"
     CDS             complement(1698..2228)
                     /locus_tag="VNN98_03055"
                     /inference="COORDINATES: protein motif:HMM:NF016408.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polymer-forming cytoskeletal protein"
                     /protein_id="HWM61099.1"
                     /translation="MFSNRSKDSAPAPQPMMAAAPAPAPKRARALSAPSIISADMVIN
                     GTITSTGDIQIDGRIEGDVRSVGLVIGDKAEIHGEVLAEDVTVRGKVVGRIRARKVLL
                     AATSHVAGDIMHEAFAVESGAFFEGNCRHSDNPLADNQPGSDESRKLPPLQRAAPSPQ
                     PATPAALFAPFNPVTT"
     gene            complement(2218..>3137)
                     /locus_tag="VNN98_03060"
     CDS             complement(2218..>3137)
                     /locus_tag="VNN98_03060"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: protein motif:HMM:NF013700.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="M23 family metallopeptidase"
                     /protein_id="HWM61100.1"
                     /translation="DAGSSALIVMPGPAQPQPRTARPVKSSLLDHAMQRFAALFQSVT
                     ASVHIGVRPVHDIPAAYAQHPALRALAEQTSRVSRIGRSETVLMARTEGALDQGVGNL
                     RNVIRRTGINPDTFARKIAGGEGMGGPEIPLDQVRIEGISDPGFTHAYLAAAAVLDQL
                     NGLSAAMDHVPLTMPVSTASFDKSSGFGPRVDPFTGRYAFHPGIDFAGPWGSVVHATA
                     PGTIVFAGNRGGYGNMVEIDHGYGIHTRYGHLSAITVRVGTKIGKGAGLGRVGSTGRS
                     TGPHVHYEVWYDDAVKNPNNFIEAGRHVL"
BASE COUNT          598 a          947 c         1028 g          564 t
ORIGIN      
        1 cgagcggcaa aagctggaca gttcgctgag tgcagtcacc aggctgacca atgaactggc
       61 cgacgccacc cagttgatcg agatggcgga agcggaaaac gacgccgcga tggtggcgga
      121 tgcggaaaat tcgctgctgg cgctgaacaa gcgcgccgaa cagatgcggc tggaatccat
      181 gttgtcgggc gaggcggacg gcaatgacag ctatatcgaa atccatgccg gggcgggcgg
      241 caccgaaagc caggactggg cctcgatgct gctgcgcatg tacacgcgct gggccgagcg
      301 ccacaattat aagctgcaac tgatcgagga aagcgaaggc gagggcgccg gcatcaagtc
      361 caccacgcta ttggtgaagg gcgagaatgc ctatggctgg ctgaagaccg aggccggcgt
      421 ccaccggctg gtgcgcattt cacccttcga ttccaatgcg cggcggcaca cttctttttc
      481 cagcgtcacg gtctatccgg tgctggacca gtcgatcgat atcgacattc ccgaaaaaga
      541 tgtgcgcatt gacgtctatc gcgccagcgg cgccggcggc cagcatgtca acaagaccga
      601 aagtgcggtg cgtatcaccc atctgcccac caacatcgcg gttgccagcc agtcggagcg
      661 cagccagcac cagaaccgcg ccatctgctg ggatatgctg aagtccaaac tctacgagat
      721 cgagctggag aaaaagaaag ccgagaccgg cgcctttgtg ggagaaaaaa aagaaatcgg
      781 ctggggccac cagatccgct cttatgtgct gcagccctat cagctggtga aggacctgcg
      841 caccggggtg gaaagccgca cgccctcaga cgtgctggac ggcgccctcg atcccttcat
      901 ggctgcggcg ctggcccagg aagttggcgg caagcccaaa gagaagatcg aggatctgga
      961 gtaaccccaa tttgtcatgg cttgcgaatg cgggccaccc aggtgggacc gcgcatgtct
     1021 caccatcata cggcgttttt cttttgaatt ttgtgccgcg gtcacctggg tggcccatac
     1081 ggagtttaca ctccggccgc gcttcgcgcg gaccggggtg gtgggccatg acagttgggt
     1141 ctatttcccc aacaccgcgt cggtcgtggt cacgctgcaa tattcgccgc ccagattggc
     1201 cagggtcatg gcatgaacct cttcagcgct gcgcggcgtt ccattccagt ccttgcgccc
     1261 gaaggtgaag caggcgtctt ccaccaacca ggtagcaaag ccgagattgc ccgccatccg
     1321 caccgtcgct tccaccgaat tgttggtgct gacgcccgcc accaccaggg ccgtgtgccc
     1381 ggcgtcgcgc agccgcgctt ccagcccggt gccgatgaag gcgctgttgg tgcgctttgg
     1441 gatcacgctt tcgccgggca ggggtgcggt ttgcggcttg aagtcatggc cgggctggcc
     1501 ggggcgataa tgcgatttcg gctcagtgga atcgtgacgg atatggatca gcggccattg
     1561 ccgcgcgcgc caatgcgtca gtaaccacac ggcctctttt tccgcgcccg gattgttgcg
     1621 aataccccaa tctggatgat cgattccccg ctgcagatca atcagcagca gaacggcgcc
     1681 atcaggcgga acgaagctta tgtcgtaacc ggattgaacg gcgcgaacaa agccgcgggc
     1741 gtggccggtt gcgggctggg cgcggcacgc tgcagcggcg gcagcttgcg gctttcatcg
     1801 ctgcccggct gattgtcggc caagggattg tcggagtggc ggcaattgcc ttcgaagaag
     1861 gcgcccgatt ccacggcaaa ggcttcgtgc atgatgtcgc ccgcgacatg actggtggcg
     1921 gccagcagta ccttgcgggc gcgaatccgg cccaccacct tgccgcgcac cgtgacgtcc
     1981 tcggccaaaa cctcgccgtg aatctcggcc ttgtcgccga tcaccaggcc cacgctgcgg
     2041 acatcgcctt cgatccgtcc atcgatctga atgtcgccgg tcgaggttat ggtgccgttg
     2101 atcaccatgt cggcgctgat gatggagggg gcggacagcg cgcgggcgcg cttgggcgcg
     2161 ggcgccggcg cggcggccat catcggctgt ggtgcgggag cactgtcttt gcttctgtta
     2221 gagaacatgg cggccagcct cgatgaagtt gttggggttc ttcacggcgt catcatacca
     2281 aacttcgtaa tggacatgcg gtccggtgct gcgcccggtg gaacccaccc ggcccaggcc
     2341 tgcgcccttg ccgatcttag ttcccacccg cacggtaatc gcggaaagat gaccatagcg
     2401 tgtatgaatt ccgtaaccat ggtcgatttc caccatattg ccatagccgc cgcggttgcc
     2461 ggcgaacact atggttcccg gcgcggtggc atgcaccacg ctgccccagg gccccgcgaa
     2521 atcgatgccg ggatggaagg catagcgccc ggtaaaggga tcgactcgcg gaccgaagcc
     2581 gctggacttg tcgaagctgg cggtcgagac cggcatggtc agcggcacat ggtccattgc
     2641 cgccgacagg ccgttcaact ggtccagcac ggcggcggcg gcgagatagg catgcgtaaa
     2701 gccgggatcc gagatgccct cgatccgcac ctggtccagg ggaatttccg gaccgcccat
     2761 gccttcgccg ccggcgatct tgcgggcgaa ggtgtcggga ttgatgccgg tgcggcgtat
     2821 gacattgcgc aaattgccga caccttggtc cagtgcgcct tcggtcctgg ccatcagcac
     2881 ggtctcggac cggccgatgc gcgagacgcg gctggtctgt tccgccaggg cgcgcagggc
     2941 gggatgctgg gcgtaagcgg cgggaatgtc gtgaacggga cgaacgccaa tatggacgct
     3001 ggcggtgacg gactggaaca gcgcggcaaa acgctgcatc gcatgatcca acaggctgga
     3061 tttaacagga cgggcggtgc gcggctgggg ctgggcgggg cccggcatca cgatcagcgc
     3121 tgaggaaccg gcatcat
//
LOCUS       DATMDK010000158         2273 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_3283966,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000158 DATMDK010000000
VERSION     DATMDK010000158.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2273)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2273)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2273
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3283966"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..387
                     /locus_tag="VNN98_03065"
     CDS             <1..387
                     /locus_tag="VNN98_03065"
                     /inference="COORDINATES: protein motif:HMM:TIGR03506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-basal body complex protein"
                     /protein_id="HWM61101.1"
                     /translation="QGYQVQGDGGAITITPNDGEVSIAPDGTISSVVNGIGNQLAKLK
                     VVEFPNPSTLVKQGANLYSTTQTPTTSTNVNLRQGALEASNVQPVIEISHMIEVMRAY
                     EATATLSKSQEDMMRQAIDKLGQMPS"
     gene            414..692
                     /locus_tag="VNN98_03070"
     CDS             414..692
                     /locus_tag="VNN98_03070"
                     /inference="COORDINATES: protein motif:HMM:TIGR03506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-basal body complex protein"
                     /protein_id="HWM61102.1"
                     /translation="MRALSIASTGMLAQQTNVEVIANNLANMNTTAFKQQRAEFTDLL
                     YQNIQTPGSQTSDQGTYAPNGIQLGAGVRTAAVYRITTQGDLKSTGNP"
     gene            798..1202
                     /locus_tag="VNN98_03075"
     CDS             798..1202
                     /locus_tag="VNN98_03075"
                     /inference="COORDINATES: protein motif:HMM:TIGR03506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-basal body complex protein"
                     /protein_id="HWM61103.1"
                     /translation="MTQDGLVVQPGIAIPANTLSVTINAQGQVTASVAGNATPQTVGQ
                     LELTRFPNEAGLNAVGNNLYLETPGSGSPQAGVPGSTGYGTIQQGFLETSNVNSVDEI
                     TALITAQRAYEMNSKVVSAADQMLQKTAQLGG"
     gene            1204..1710
                     /gene="flgA"
                     /locus_tag="VNN98_03080"
     CDS             1204..1710
                     /gene="flgA"
                     /locus_tag="VNN98_03080"
                     /inference="COORDINATES: protein motif:HMM:TIGR03170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009428 - bacterial-type flagellum basal
                     body, distal rod, P ring [Evidence IEA];
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0001539 - cilium or flagellum-dependent
                     cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body P-ring formation chaperone
                     FlgA"
                     /protein_id="HWM61104.1"
                     /translation="MTRKLIVFLGIFTLLPALMLLLASSAFANTVRIVVPAHDIARGD
                     TIGESDLTFASVDGAALMSGVPTKMNEVLGLQARRVLAAGQPFRSDDVRRPIVVTKGQ
                     TVTMQFTVPGVELMAMGRAMSEGGVGDTVTVQNPVSYRMISAIVTAPGTVRATGAMSS
                     SANTLARR"
     gene            1730..>2273
                     /locus_tag="VNN98_03085"
     CDS             1730..>2273
                     /locus_tag="VNN98_03085"
                     /inference="COORDINATES: protein motif:HMM:NF014195.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009427 - bacterial-type flagellum basal
                     body, distal rod, L ring [Evidence IEA];
                     GO_function: GO:0003774 - cytoskeletal motor activity
                     [Evidence IEA];
                     GO_process: GO:0071973 - bacterial-type
                     flagellum-dependent cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body L-ring protein FlgH"
                     /protein_id="HWM61105.1"
                     /translation="MRNVLLKLSAALMMGAALSACSAVDRLQNIGQAPKLSAVGNPAG
                     RQIVAEIPRPSPITHIDNSLWQPGAQSFFHDPRAMHIGDVITVNVSVADTAKLQNTTS
                     RSRTNSENASLDNLLGLEKVLPGIGMDPSSLVKTGSDNSNVGVGSIQRAESISMTLAA
                     LVAQVLPNGNLVIDGHQQVRV"
BASE COUNT          456 a          779 c          651 g          387 t
ORIGIN      
        1 cagggctatc aagtccaggg cgatggcggc gccatcacca tcacgcccaa tgacggcgaa
       61 gtcagcatcg cgcccgacgg caccatttcc agcgtggtca acggcatcgg caatcagctt
      121 gccaagctca aggtggtcga gttcccaaat cccagtacgc tggtgaaaca gggcgccaat
      181 ctctattcca cgacccagac cccaactaca tccaccaatg tcaacctgcg ccagggtgcg
      241 ctggaagcct ccaacgtcca gccggtgatc gagatcagcc atatgatcga ggtgatgcgc
      301 gcctatgagg cgaccgccac cttgagcaag tcccaggaag acatgatgcg ccaggctatc
      361 gacaagcttg gccaaatgcc cagttaagtt gcccacgtaa aggagacacg acaatgcgcg
      421 ccctttccat cgcctcgacc ggcatgcttg cccagcagac caacgtggaa gtgatcgcca
      481 ataatctggc gaacatgaac accacggcct tcaagcagca gcgcgccgag tttaccgacc
      541 tgctgtatca gaacatccag acccccgggt cgcagacctc cgaccagggc acctatgccc
      601 ccaacggcat ccagctgggc gccggcgtgc gcaccgcggc ggtctaccgc atcaccaccc
      661 agggcgacct caagtccacg ggcaatccct aagacgttgc catccagggc tccggcttct
      721 tccgcatcca gcagtccgat ggcaccgacg cctattcccg ctcgggcaac ttctcgctca
      781 gcccccaggg ccagctggtg acccaggatg ggctggtggt gcagccgggc atcgccattc
      841 cggcgaacac gctgtcggtg acgatcaacg cccagggcca ggtcacggcc tcggtggcgg
      901 gcaatgccac gccccagact gtgggccagc tggaactgac gcgcttcccc aatgaagcgg
      961 ggctgaatgc cgtcggcaac aacctttatc tggagacccc cggctcgggc agtccccagg
     1021 cgggcgtgcc cggctcgact ggctacggca ccatccagca aggttttctg gaaacctcca
     1081 atgtcaattc ggtggacgag atcacggcgc tgatcaccgc ccagcgtgcc tatgaaatga
     1141 attccaaggt tgtctctgca gcggatcaga tgctgcaaaa gaccgcccaa ttgggagggt
     1201 aagatgacgc gcaaactcat cgtctttctg ggcatcttca cgctcctccc ggccttgatg
     1261 ctgctgctgg caagctccgc cttcgccaat acagtgcgca tcgtggtgcc ggcgcacgat
     1321 atcgcgcgcg gcgacaccat cggcgaaagc gacctgacct ttgccagcgt ggacggcgcc
     1381 gccctgatgt ccggcgttcc caccaagatg aacgaagtcc tgggactgca ggcccgccgc
     1441 gtgctggccg ccggtcagcc cttccgcagc gatgacgtgc gccggccgat cgttgtcacc
     1501 aagggccaga ccgtcaccat gcaatttacc gtcccgggcg tggaactgat ggccatgggc
     1561 cgggcgatga gcgaaggcgg cgtcggcgac accgtcaccg tccagaatcc ggtttcctac
     1621 cgcatgattt ccgccatcgt cacggcgccg ggcaccgtgc gcgccaccgg ggccatgagt
     1681 tcgtccgcca acacacttgc tcgccgataa gccaccgata ggatttgcca tgcgtaacgt
     1741 cctcctgaaa ctctccgccg ccctgatgat gggcgctgct ctatccgcct gctcggcggt
     1801 ggaccggctg caaaatatcg gccaggcgcc caagctttcg gcggtgggca atcccgccgg
     1861 ccggcagatc gtggccgaga ttccgcgccc ctcgcccatc acccatatcg acaattcgct
     1921 gtggcagccc ggcgcccaga gcttcttcca cgatccgcgc gccatgcata tcggcgatgt
     1981 gatcacggtg aatgtctcgg tggccgacac cgccaagctg cagaacacca cctcgcgcag
     2041 ccgcaccaat tccgagaatg ccagcctgga caatctgctc ggcctggaga aagtgctgcc
     2101 cggcatcggc atggatccca gcagcctggt caagacaggc tcggacaatt ccaatgtcgg
     2161 tgtcggttcg atccagcgcg cggaatccat cagcatgact ctggcggcgc tggttgccca
     2221 ggttctgccc aacggcaatc tggtgatcga tggccatcaa caggtgcggg taa
//
LOCUS       DATMDK010000159         2003 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_72969,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000159 DATMDK010000000
VERSION     DATMDK010000159.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2003)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2003)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2003
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_72969"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..763)
                     /locus_tag="VNN98_03090"
     CDS             complement(<1..763)
                     /locus_tag="VNN98_03090"
                     /inference="COORDINATES: protein motif:HMM:NF013584.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016810 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidase"
                     /protein_id="HWM61106.1"
                     /translation="MSELNSMTLAEARDAIRAKKLSSRELTAAFVAAIEKARPLNAFI
                     TEAGEKALAMADASDRRIAAGKAGALEGLPLAIKDLFCTKGTRTTAGSKILGNFVPPY
                     ESTVTQNLWDAGAVMLGKTNMDEFAMGSSNETSAFGPVFNPWRARNSNANLVPGGSSG
                     GSSAAVAADLCLAATGTDTGGSIRQPAAVTGRVGLKPTYGRCSRFGIVAFASSLDQAG
                     PMTKTVKDAAIMLKTMASVDAKDSTSMDLAVPDYEK"
     gene            complement(763..1050)
                     /gene="gatC"
                     /locus_tag="VNN98_03095"
     CDS             complement(763..1050)
                     /gene="gatC"
                     /locus_tag="VNN98_03095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008036565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030956 - glutamyl-tRNA(Gln)
                     amidotransferase complex [Evidence IEA];
                     GO_function: GO:0050567 - glutaminyl-tRNA synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0006424 - glutamyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatC"
                     /protein_id="HWM61107.1"
                     /translation="MSVDKDTVRRIAKLARLAVPENRLEPMAGELNGIFQWVEMLGEV
                     NVEGVPAMTSVVAQKLKWRADKVSDGNQADALLANAPEGEDHFFVVPKVIE"
     gene            1126..1587
                     /gene="ruvX"
                     /locus_tag="VNN98_03100"
     CDS             1126..1587
                     /gene="ruvX"
                     /locus_tag="VNN98_03100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008036645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction resolvase RuvX"
                     /protein_id="HWM61108.1"
                     /translation="MAVVVLEELKLAPRLRLLGLDLGEKTIGLALSDTGLSIATPMQT
                     LKRGKFAADAAQLDIIISAQGVGGLVVGLPLNMDGSDGPSAQSARAFGRNWVNRSPLP
                     VIFQDERLSTSAVTRTLLDADASRRRREELVDKMAAAYILQGALDRLRNLR"
     gene            1584..>2003
                     /locus_tag="VNN98_03105"
     CDS             1584..>2003
                     /locus_tag="VNN98_03105"
                     /inference="COORDINATES: protein motif:HMM:NF012312.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HWM61109.1"
                     /translation="MKRDTDPARFLWLPPGLRPPVQMEWRQERIFLLVGAAAFFAGYD
                     MNIFFLAAPQIQATFHIPENQIALTTAYFRLAAVFSMLICASADLVGRRRLLLVTIFG
                     QAVFTLATAFAGGYASFVWAQFFTRVFGYAEEMLCFVV"
BASE COUNT          328 a          660 c          629 g          386 t
ORIGIN      
        1 gtttttcgta gtcgggcacc gccaaatcca tgctggtgga gtctttggca tccacactgg
       61 ccatggtttt caacatgatg gcggcatcct tgaccgtctt ggtcatgggc ccggcctggt
      121 ccagcgacga ggcgaaagcg acaatgccga agcgcgagca gcggccatag gtcggcttga
      181 gcccgacccg ccccgtaacg gcagcgggct ggcggataga accgccggtg tcggtgccgg
      241 tggcggccag gcacagatcg gcggcgaccg cggccgacga gccgccggag gaaccgcccg
      301 gcaccagatt ggcgttggaa ttgcgcgccc gccagggatt gaacaccgga ccgaaggcgc
      361 tggtctcgtt ggacgagccc atggcgaact catccatgtt ggtcttgccc agcatcaccg
      421 cgcccgcgtc ccacagattc tgggtgacgg tggattcata aggcggcacg aaattgccga
      481 gaatcttgga ccccgccgtg gtgcgggtgc ccttggtgca gaacaggtcc ttgatcgcca
      541 ggggcaggcc ttccagcgct ccggccttcc cggccgcgat gcgtcggtcg gacgcatcgg
      601 ccatagccag cgccttctcg cccgcctcgg tgataaaggc gttcagaggc cgcgcctttt
      661 cgatggccgc gacaaaggcc gcggtcagtt cgcgggagga aagttttttg gccctgatgg
      721 catcgcgcgc ctcggccaaa gtcatgctgt tcaattcgga cattactcaa tcaccttagg
      781 caccacgaaa aagtgatctt cgccttccgg cgcattggcc agcagggcat cggcctggtt
      841 gccgtcgctc actttgtccg cgcgccattt cagcttctgc gccaccacac tggtcatggc
      901 gggcacgcct tcgacattga cctcgcccag catctccacc cattggaaga tgccgttcaa
      961 ttccccggcc atgggctcga gccggttttc cggcacggcc aggcgggcca gtttggcgat
     1021 gcggcgcacg gtgtccttgt cgacggacat gaggttcctg ctgtgttagg tagggcctcg
     1081 tagctagcaa ccgggggagc cggaggcaag caaaaggggg catttgtggc cgtcgtggtg
     1141 ctggaagaac tgaaactggc gccccgattg cggctgctgg ggctggatct gggggaaaag
     1201 accatcggcc tggccctgtc cgacacaggg ctttccatcg ccaccccgat gcagaccctg
     1261 aaacggggta aattcgccgc cgacgccgcc cagctggaca ttataataag tgcgcagggg
     1321 gtcggcggcc tggtggtcgg cctgcccctg aacatggacg gctcggacgg ccccagcgcc
     1381 caatcggccc gggcttttgg ccgcaactgg gtgaaccgct cgcccctccc cgttatattc
     1441 caggatgaac gactttccac cagcgccgtg acccgcaccc tgctggatgc cgatgcctcg
     1501 cgccgccgcc gcgaggaact ggtggacaag atggccgccg cttacatttt acagggcgcg
     1561 ctggaccgcc tacggaacct cagatgaaac gcgacaccga tcccgcccgc ttcctgtggc
     1621 tgccgcccgg actgcgccct cccgtgcaga tggaatggcg gcaggagcgc atcttcctgc
     1681 tggtcggcgc cgcggcgttt ttcgccggct acgacatgaa catctttttc ctcgccgcgc
     1741 cgcagatcca ggccaccttc catattccgg aaaaccagat tgccctgacc accgcctatt
     1801 tccgcctggc cgccgtcttc tccatgctga tttgcgccag tgccgacctg gtgggacgcc
     1861 gccggctgct gctggtcacc atcttcggcc aggcggtgtt caccttggcg accgccttcg
     1921 caggcggcta cgcctcgttc gtctgggcgc agttcttcac ccgcgtcttc ggctatgccg
     1981 aggagatgct ctgtttcgtg gtg
//
LOCUS       DATMDK010000160         2658 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_548501,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000160 DATMDK010000000
VERSION     DATMDK010000160.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2658)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2658)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2658
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_548501"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1022
                     /gene="pnp"
                     /locus_tag="VNN98_03110"
     CDS             <1..1022
                     /gene="pnp"
                     /locus_tag="VNN98_03110"
                     /EC_number="2.7.7.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009567342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004654 - polyribonucleotide
                     nucleotidyltransferase activity [Evidence IEA];
                     GO_process: GO:0006402 - mRNA catabolic process [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="polyribonucleotide nucleotidyltransferase"
                     /protein_id="HWM61110.1"
                     /translation="GTGKQTFMLHYNFPPYSVGETGRMGAPGRREIGHGKLAWRAIHP
                     MLPKKDEFPYTIRVVSEITESNGSSSMATVCGGSLAMMDAGVPLKRPVSGIAMGLILE
                     GKDFAVISDILGDEDHLGDMDFKVAGTSEGITSLQMDIKIAGITEEIMKVALAQAKGG
                     RLHILGEMNKALTGARAELGEHAPRIEQIKIPVDKIRDVIGTGGKVIREIVEKTGAKI
                     NVEDDGTVKVASSDHEAIKAAIKWIRGLTAEPEVGQIYDGKIVKVMDFGAFVNFFGPK
                     DGLVHVSELASSRVASPKDVVKEGQAVKVKLLGFDDRGKVRLSMKQVDQTTGEDLTKK
                     ADAPV"
     gene            1101..1568
                     /locus_tag="VNN98_03115"
     CDS             1101..1568
                     /locus_tag="VNN98_03115"
                     /inference="COORDINATES: protein motif:HMM:NF019498.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HWM61111.1"
                     /translation="MPKIDIAAIKPRKGSGYPVPFHEIAKARLKKSLGDAAGLSDFGV
                     NLVTLPPGAWSSQRHWHSAEDELVYLLSGELVLVTDGGEEVLRAGDCAAFAKGVADGH
                     HLINRSDGDAVYLEVGSRRPDDACSYPDIDLMLGGGDGQFRRRDGTPYPPRQG"
     gene            1635..1922
                     /locus_tag="VNN98_03120"
     CDS             1635..1922
                     /locus_tag="VNN98_03120"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61112.1"
                     /translation="MRLISLILIVAALMLLGADAVTSLERGGELTVRSLGVIWGLFHQ
                     HSLDGFKSWVQNHLPFMAQGIYSALALPGWAATGVLGVILAFIFGRKLGPE"
     gene            complement(1966..2529)
                     /locus_tag="VNN98_03125"
     CDS             complement(1966..2529)
                     /locus_tag="VNN98_03125"
                     /EC_number="2.5.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004647509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008817 - corrinoid adenosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0009236 - cobalamin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cob(I)yrinic acid a,c-diamide
                     adenosyltransferase"
                     /protein_id="HWM61113.1"
                     /translation="MVTLSKIYTKTGDSGETGLGDGSRISKTSLRITAIGAVDETNSA
                     IGVARLDAEGDADAMLARIQNDLFDLGADLCTPEDGRKAKGRLRISGAQVERLEREID
                     AMNEKLSPLTSFVLPGGTALAAHLHLARAIARRAEAAIVALAATETINEAALRYANRL
                     SDHLFVMARTANDGGMGDVLWVPGENR"
BASE COUNT          489 a          813 c          845 g          511 t
ORIGIN      
        1 aaggcaccgg caagcagacc ttcatgctgc actacaactt ccctccctac agcgtgggcg
       61 aaaccggccg catgggcgcc cccgggcgcc gcgaaatcgg ccatggcaag ctggcctggc
      121 gcgccattca cccgatgctg cccaagaagg atgagttccc ctacacgatc cgcgtggtgt
      181 cggagatcac cgaatccaac ggttcgtcgt cgatggcgac ggtgtgcggc ggttcgctcg
      241 cgatgatgga cgccggcgtt ccgctcaagc gtccggtatc gggcatcgcg atgggcctga
      301 tcctcgaagg caaggatttc gcggtcatct ccgatatcct cggcgacgag gatcatctgg
      361 gcgacatgga cttcaaggtt gccggcacgt ccgaaggcat caccagcctt cagatggaca
      421 tcaagatcgc cggcatcacc gaggagatca tgaaggtcgc tctggcgcag gccaagggcg
      481 gacgactgca tatcctgggc gagatgaaca aggccctgac cggcgcccgc gccgagctgg
      541 gcgaacatgc cccgcgcatc gagcagatca agatcccggt cgacaagatc cgcgacgtga
      601 tcggcaccgg cggcaaggtg atccgcgaga tcgtggaaaa gaccggcgcc aagatcaatg
      661 tcgaagacga cggcacggtg aaggtcgcct ccagcgacca tgaagcgatc aaggcggcga
      721 tcaagtggat tcgcggactt accgccgaac cggaagtcgg tcagatctat gacggcaaga
      781 tcgtcaaggt gatggacttc ggcgcctttg tgaacttctt cggccccaag gacggtttgg
      841 tgcatgtttc ggaactggcg tcgagccggg tcgccagccc caaggacgtg gtcaaggaag
      901 gccaggcggt gaaggtcaag ctgctgggct tcgacgatcg cggcaaggtg cggctgtcga
      961 tgaagcaggt ggaccagacc accggcgaag acctgaccaa gaaggccgac gcgccggtct
     1021 gactttcagt ctgactttac aattgagaaa caaccgtccg cgggtctagg ctcgcgggcg
     1081 gtttttcttt gggacttcat atgccgaaaa tcgacatcgc cgcgataaag ccgcgcaagg
     1141 ggtcgggcta tcccgtgccg tttcatgaaa tagcgaaggc gcggctcaag aaatcgctgg
     1201 gcgacgccgc ggggctcagc gatttcggcg tcaatcttgt caccctgccg ccgggcgcct
     1261 ggtccagcca gcgccactgg cacagcgccg aggatgaact ggtctatttg ctgtcgggcg
     1321 aactggtctt ggtcacggac gggggcgaag aggtcttgcg cgcaggcgac tgcgccgcct
     1381 tcgccaaggg ggtggcggat ggccaccacc ttatcaaccg gtcggatggc gatgcggtct
     1441 atctggaagt cggcagccgc aggcccgacg atgcctgcag ctatcccgac atcgacttga
     1501 tgctcggcgg cggggacggc cagtttcggc gcagggatgg gaccccttat ccgccgcgac
     1561 aaggttaacc ccgtcccggc cttgttcttg tcgggcggcg gtgggcgcgc tatctgtccc
     1621 ctatggccgt tttgatgcgt cttatcagcc tgatcctgat cgtggccgcc ctgatgctgc
     1681 tgggcgccga cgcggtgacc tcgttggagc gcggcggcga gctgacagtg cgcagcctgg
     1741 gtgtcatttg gggcctgttc catcagcaca gcctggatgg tttcaagagc tgggtgcaga
     1801 accatctgcc cttcatggcg caggggattt attccgccct ggcgctgccg ggttgggctg
     1861 cgactggggt tctgggcgtc attctggcgt ttatttttgg aagaaagctc ggcccggaat
     1921 aacccccaat tgtcatggcc cgcattcgcg ggccatgaca ctgagttacc tgttctcgcc
     1981 aggaacccac agcacatcgc ccatgccgcc gtcattggct gtacgcgcca tcacgaacag
     2041 atgatccgac agccgattgg catagcgcag cgctgcttcg ttgattgttt ccgttgctgc
     2101 cagtgcgacg atggcggctt ctgcccgccg ggcgatggcg cgggccagat gcagatgcgc
     2161 cgccagggcc gtgccgccgg gcagcacgaa agaggtcagc ggcgaaagct tctcattcat
     2221 tgcgtcgatc tcgcgctcca gccgctcgac ctgcgcgccc gagattcgca accggccttt
     2281 tgccttgcgc ccgtcctcgg gtgtgcacag gtcggcgccc aaatcgaaca ggtcgttctg
     2341 gatgcgcgcc agcatggcgt ccgcatcgcc ttcagcgtcc agccgggcta caccgatggc
     2401 ggagttggtt tcgtccaccg cgccgatggc tgtgatgcgc aggctggtct tggaaatccg
     2461 gctgccgtca cccagcccgg tttcaccgga atcgccggtt tttgtgtaga ttttgctcaa
     2521 ggtgaccatg tgctaacccg ccacttgccc gccaaatctt aacggctatg atcccgacaa
     2581 tcttcaatta tttggcccgc aaatttgagt gttcccatgc ccgctttggc ccccgaaatc
     2641 gtcgaaaccg accagacc
//
LOCUS       DATMDK010000161         5550 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_73364,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000161 DATMDK010000000
VERSION     DATMDK010000161.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 5550)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5550)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5550
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_73364"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            302..1501
                     /locus_tag="VNN98_03130"
     CDS             302..1501
                     /locus_tag="VNN98_03130"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012656.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HWM61114.1"
                     /translation="MLQNAQTVSALPGSKPESLASRAARAAEVAAAHAGPVDADSRFP
                     AEAMDVLKAEKLLGILVPAELGGEQASVADVVDICYTLGRACSSTGMIYAMHQVKAAC
                     VAYHGMDSTWHRAFMARMVEDQLLLASSTTEGKGGGNVRSSEAAIEQADNRIVLVRDA
                     SVISYGAQADAVVTTARRAAESDASDQVLVVFEKKNYVLEKTVGWDTLGMRGTCSAGF
                     SLKAVGSPKQIMPVPYGIIHTQTMVPTSHLMWAGNWAGIAAGAVDRAKKFMRKAQRGG
                     GDLPPGVPHFTKALANLRSLRALIAASLNRYEAIAKDPKALSAIDFQTAINLLKVDAS
                     ELAVETVMNAMRAAGLSGYRNDTDVSIGRSLRDVLSSPIMINNDRILSSLAGSTILSE
                     IPISIRD"
     gene            1505..2446
                     /locus_tag="VNN98_03135"
     CDS             1505..2446
                     /locus_tag="VNN98_03135"
                     /EC_number="6.2.1.n2"
                     /inference="COORDINATES: protein motif:HMM:NF005479.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid--[acyl-carrier-protein] ligase"
                     /protein_id="HWM61115.1"
                     /translation="MNIAAPITHACCDHTFEPEHLHPIVAQLFKPSGVDGVYGRTGAY
                     ESVIEALAALISRHRPDGAEVFRFPPVMPRASLEKQGYLQSFPNLIGAVSTLVGTDRE
                     IAKSAAKHEAGGDWTEDLKPADLVLAPAACYPIYPIAAERGIVPDEGYIFDVAADCFR
                     HEPSRHVDRFQSFRMREYVRIGTPQQIQEFREPWIKRAQGIADAIGLPYTVDVANDPF
                     FGRVGALMANQQREDALKFELLVPVRSAESPTACMSFNYHKEHFGEVWGLHNAKGDVL
                     HTGCVAFGMDRLAVALFVTHGAEIKNWPVSVRTALSL"
     gene            complement(2542..3273)
                     /locus_tag="VNN98_03140"
     CDS             complement(2542..3273)
                     /locus_tag="VNN98_03140"
                     /inference="COORDINATES: protein motif:HMM:NF024950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HWM61116.1"
                     /translation="MDRRNVLISGGTRGVGLAIARKLAADGFCVFALGRKESGGLTKA
                     IAEFPAGTLNFVPFDLANLDVIPDLIREMKAEHGPLYGLVNNAALGTDGLLSNMHNSD
                     IERLVKLNTIAPILLTKYAVRAMMTEGQGRIVNISSIIGFTGYSGLSVYGATKASMLG
                     FTRSLAREVGKLGVTVNAVAPGFMDTEMTGSMTDEQRGKIAGRAALRRLVDVDDVAAS
                     VAFLMSDAAKNITGTTITVDAGNTA"
     gene            complement(3266..4603)
                     /locus_tag="VNN98_03145"
     CDS             complement(3266..4603)
                     /locus_tag="VNN98_03145"
                     /inference="COORDINATES: protein motif:HMM:NF012711.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fatty acid--CoA ligase family protein"
                     /protein_id="HWM61117.1"
                     /translation="MLPKDNSRAESLRAAIAGSTASLLGRRACVRLRDMGRAIDADLA
                     GKHVLLRTADQLTAALGLIELDGVAQRIVIAPPDVKPEHLPSVMERAAIDVVVSDGPA
                     LAVDGARSEQVHLPQAGKAVTATCKTEWVLFTSGTTGAPKMVAHTLEGLTGTIQPAAQ
                     EGTVWGTFYDIRRYGGLQILLRALLGRASLILSDASEDVADFLARLGQHGVTHLTGTP
                     SHWRRALMSPANSVINPRYVRLSGEIADQAILDSLKARFPDAAIGHAYASTEAGVGFE
                     VTDGLEGFPAAFIGKPGAVEMKVADGALHIRSPRTANQYVGGTDALMNEGWVDTGDMV
                     ELKGERYYFAGRIGGIINVGGLKINPEEVEAVINRYPGVRASRVSGRKSPITGAIVIA
                     DVVLSDVANDNATFKQAILDACREKLPAFKVPAMLRFVPALELTAGGKLSRHG"
     gene            complement(4587..4835)
                     /locus_tag="VNN98_03150"
     CDS             complement(4587..4835)
                     /locus_tag="VNN98_03150"
                     /inference="COORDINATES: protein motif:HMM:NF012759.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HWM61118.1"
                     /translation="MSVETIVRAEFEQVAREQDKTLARLSDDTVLLESGLDSLCFAII
                     VARLEDQLGVDPFTASEDVYFPVTVGDFIKFYQDAAQG"
     gene            4937..>5550
                     /locus_tag="VNN98_03155"
     CDS             4937..>5550
                     /locus_tag="VNN98_03155"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61119.1"
                     /translation="MSIEPQQANRLRCRPIVESDLEGLADLLTRGFPRSRRDYWTAGF
                     ARWKNIPIVEGVPRYGYVLDGGFGPVGVILLISSQRGKQIVSNLSSWYVEPQWRTHST
                     LLISAATKLKHVTYLNASPAPHTWRTLQAQGFLPYNFGRSAVFALPGRGTVSTVIPDD
                     LPEAQLLRDHQGMGWISLVVEKDCIASPFVFKPRRLDKPPAPVM"
BASE COUNT         1021 a         1828 c         1692 g         1009 t
ORIGIN      
        1 gcccggcctc gcgcagattg tcgcccgcgc cgggaatcgc cgtgatgccg cgcttgagca
       61 gcatacggca ggcgatggcg gtaatgcggt ctgtggccaa ggacatggcg aactcctgaa
      121 gccgccaatc tagcgatcac cagtaaacca ttggtttcct gtaggacgca ttaacgcctc
      181 gcttaccaag agttccccag ttcatccttg cttcagattt aaatcttatt ctgcaccgcg
      241 atccggaagc gtcggcaccc ccgaagggcg gcaccgcgcg tcccttattc aagagcgtgc
      301 catgctgcag aacgcccaga ccgtctccgc cctgcccggc agcaaaccgg aaagcctggc
      361 cagccgcgcc gcccgcgccg ccgaggtggc cgccgcccat gcggggcccg tggacgccga
      421 cagccgcttc cccgccgaag cgatggacgt gctgaaagcg gaaaaactgt tgggcattct
      481 ggtgcccgcc gaattgggcg gcgagcaagc cagcgtcgcc gacgtggtgg acatttgcta
      541 cacattgggc cgcgcctgtt cctccaccgg catgatctac gccatgcacc aggtgaaggc
      601 cgcctgcgtc gcctatcacg gcatggactc gacctggcac cgcgccttca tggcccggat
      661 ggtcgaggac caactgctgc tggcctcttc caccaccgaa ggcaagggcg gcggcaatgt
      721 ccgctcttcg gaagccgcta tcgaacaggc cgacaaccgc atcgtgctgg tgcgcgacgc
      781 cagcgtgatc tcctatggcg cccaggccga tgcggtagtg accacggcgc gccgcgccgc
      841 cgaatccgac gccagcgacc aggtgctggt ggtgttcgag aagaagaact acgtgctgga
      901 aaagactgtc ggctgggaca cgctgggtat gcgcggcacc tgcagcgctg gattttcctt
      961 gaaagccgtg ggcagcccca agcagatcat gccggtaccc tatggcatca tccacaccca
     1021 gaccatggtg ccgacttcgc atctgatgtg ggccggcaac tgggccggca tcgcggcggg
     1081 cgcggtggac cgggccaaga aattcatgcg caaggcgcag cgcggcggcg gcgatctgcc
     1141 gcccggcgtg ccgcatttca ccaaggcgct ggccaatctg cgctcgctgc gtgccctgat
     1201 cgccgccagc ctgaaccgct atgaagccat cgccaaggat cccaaggcgc tgtcggccat
     1261 cgatttccag accgcgatca atctcctgaa ggtggatgcg tcggagctgg cggtggaaac
     1321 ggtgatgaac gccatgcgcg ccgccggcct gtcgggctat cgcaacgata ccgatgtcag
     1381 tatcggccgc agcctgcgcg atgtgctgtc ctcgccgatc atgatcaaca atgaccgcat
     1441 cctgtccagc ttggcgggat cgactattct gtccgagatt cccatctcca tccgggatta
     1501 agccatgaac atcgccgcgc cgatcacgca tgcttgctgc gaccatacgt tcgagccgga
     1561 acacctgcat cctatcgtgg cgcaattgtt caagccctcg ggcgtcgacg gcgtctatgg
     1621 ccgtaccggc gcctatgaaa gcgtgatcga ggcgctggcg gcgctgatct cgcgccatcg
     1681 cccggacggt gccgaagtgt tccgctttcc gccggtgatg ccgcgcgcgt cgctggaaaa
     1741 gcagggctat ctgcaaagct ttcccaacct gatcggtgcg gtttccactt tggtgggcac
     1801 ggaccgcgag atcgccaaat cggcggccaa gcatgaagcg ggcggcgact ggaccgagga
     1861 tctcaagccc gccgatctgg tgctggcgcc ggccgcctgt tacccgatct atcccatcgc
     1921 cgccgagcgc ggcatcgtgc cggatgaggg ctatatcttc gacgtggccg ccgactgttt
     1981 tcgccatgag ccgtcgcgtc atgtcgaccg cttccagagt ttccgcatgc gcgaatatgt
     2041 ccgcatcggt acgccacagc agattcagga attccgcgag ccctggatca agcgcgccca
     2101 gggcatcgcc gacgccatcg gcctgcctta cacggtggac gtggccaacg atccgttctt
     2161 cggccgggtc ggcgccctga tggcgaacca gcagcgcgaa gacgcgctga agtttgaatt
     2221 gctggtgccg gtgcgttcgg ccgaaagccc caccgcctgc atgagcttca attatcacaa
     2281 ggaacatttc ggtgaagtct ggggcctgca caacgccaag ggcgacgtgc tgcacaccgg
     2341 ctgcgtcgct ttcggcatgg accggctggc ggtggcgttg ttcgtcactc acggcgccga
     2401 gatcaagaac tggcccgtgt cagtacgaac cgccctcagc ctctaaaacg tcatcgcccg
     2461 gtttatccgg gcgatccagt ttcttccaaa aacaaaatgg atggcccgca tgaagcgggc
     2521 catgacgagt cggggaatgg gctacgccgt gtttcccgca tcaacggtaa tcgtcgtgcc
     2581 ggtgatgttc ttggcggcat ccgacatcag gaacgccacg ctggcggcca catcgtccac
     2641 atccaccagc cgccggagcg cggcgcggcc ggcgatcttg ccacgctgct cgtccgtcat
     2701 gctgcccgtc atctcggtgt ccatgaagcc cggcgccacg gcattgaccg tcacgcccag
     2761 cttgcccact tcgcgcgcca ggctgcgggt gaagcccagc atcgaagcct tggtggcgcc
     2821 atagaccgac aggccgctat agccggtaaa gccgatgatc gagctgatat tgacgatgcg
     2881 gccctggccc tcggtcatca tggcgcgcac ggcatatttg gtcagcagga tgggcgcgat
     2941 ggtgttcagc ttcaccagcc gctcgatgtc ggaattgtgc atgttggaga gcaggccatc
     3001 ggtgcccaag gcggcgttat tgaccaggcc gtagagcggg ccgtgctcgg ctttcatttc
     3061 gcggatcaga tcggggatca catccagatt ggcaagatcg aagggcacga agttcagcgt
     3121 tcccgcagga aattccgcga tcgccttggt cagcccaccc gattccttgc ggcccagggc
     3181 gaagacgcaa aagccatccg ccgccagttt gcgcgcaata gccaggccga cgccgcgggt
     3241 gccgccgctg atcaagacgt tacgcctatc catgacggct cagctttcca ccggccgtca
     3301 gttccagcgc cggcacgaag cgcagcatgg ccggcacctt gaaggcgggc agtttttcgc
     3361 ggcaagcatc caggatggcc tgcttgaaag tggcattgtc gttggcgaca tcgctgagca
     3421 ccacatcggc aatgacaatg gcgccggtga tggggctctt gcggcccgag acccgcgagg
     3481 cgcgcacccc gggatagcgg ttgatcactg cttccacttc ctcggggttt atcttgagcc
     3541 cgccgacatt gatgatgccg ccgatgcggc cggcgaagta ataccgctcg cctttcaatt
     3601 cgaccatgtc gccagtatcc acccagcctt cattcatcag cgcgtcggta ccgccaacat
     3661 attggttggc ggtgcgcggt gaacgaatat gcagggcgcc gtccgcgact ttcatttcca
     3721 cggcacctgg cttgccgatg aaggcggcag gaaagccttc caacccgtcg gtaacctcaa
     3781 agccgacacc ggcttccgtg gaagcataag catggccgat agcggcatcg gggaaccgcg
     3841 ccttgaggct gtcgagaatg gcctggtcgg cgatctcgcc cgacaggcgg acatagcgcg
     3901 gattgatcac gctattggca ggactcatca gggcgcggcg ccaatgcgat ggcgtgccgg
     3961 tgagatgggt aacgccgtgc tggcccaacc gcgcgagaaa atcagccaca tcttccgatg
     4021 catccgacag gatcagcgag gcccggccca gcagcgcccg caacaatatc tgcagcccgc
     4081 catagcggcg gatgtcatag aaagtgcccc agacggtgcc ctcctgggca gcgggctgaa
     4141 tcgttccggt caaaccttcc agtgtgtgcg ccaccatctt gggggcaccg gtcgtgcccg
     4201 acgtgaacag cacccattcc gtcttgcatg tggcagtaac ggccttgccg gcctgcggca
     4261 gatgcacctg ttcagaacgc gcgccgtcca ccgccagcgc cggaccgtca ctcaccacca
     4321 cgtcaatcgc ggcacgctcc atcacggacg gcaggtgttc cggcttcacg tccggcggag
     4381 cgatgacgat gcgctgcgcc acgccgtcca gttcgatcaa acccagtgca gccgtcagct
     4441 ggtcggcggt gcgcagcagc acatgcttgc cggccaggtc ggcatcgatt gcccggccca
     4501 tatcgcgcag cctcacacag gcgcgccgtc ccagcaggct ggcggtgctg ccggctatgg
     4561 cggcccgcag gctttcagcc cttgaattat ccttgggcag catcttggta gaatttgatg
     4621 aagtcgccca cggtcacggg gaaatagacg tcttcggagg ccgtgaaagg gtccaccccc
     4681 aactggtctt ccagccgcgc cacgatgatg gcaaagcaca gcgaatccag cccggattcc
     4741 agcagcaccg tgtcgtccga caggcgggcc agggtcttgt cctgctctcg cgccacctgt
     4801 tcgaattcgg cacggacgat ggtttcgacg ctcatgaagg gcccctgagt tgaggcctta
     4861 atctaaccgc gcgagcttta acgatccgct aatggcaaat gccgcataaa ggcttgaggg
     4921 aaagggcctt ttcgccatga gtatcgaacc tcagcaggcc aatcgcctcc gctgccgtcc
     4981 gatcgtcgaa agcgacctgg aagggctggc ggatctgctg acccgcggct tcccgcgctc
     5041 gcgccgcgat tactggacgg ccggcttcgc ccgctggaaa aatattccca tcgtcgaagg
     5101 tgtgccgcgc tacggctatg tgctagatgg cggcttcggc ccggtgggcg tcatcctgct
     5161 gatctcgtcc cagcgcggca agcagatcgt ctccaacctg tcgagctggt atgtcgagcc
     5221 gcaatggcgc acccattcca ccctgctgat ctcggcggcg accaagctca agcatgtcac
     5281 ctatctcaac gcctcgcccg cgccccatac ctggcgcacc ctgcaggctc agggcttcct
     5341 gccttacaat ttcggccgca gcgccgtctt cgctctgccc ggccgcggta ctgtcagcac
     5401 cgtcattccc gatgatctgc ccgaagcgca attgctgcgc gaccaccagg gcatgggctg
     5461 gatcagcctg gtggtggaaa aagactgcat cgcctcgccc tttgtcttca agccgcgccg
     5521 gctggacaag ccgccggcgc cggtgatgga
//
LOCUS       DATMDK010000162         2815 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_766681,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000162 DATMDK010000000
VERSION     DATMDK010000162.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2815)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2815)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2815
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_766681"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            61..1056
                     /locus_tag="VNN98_03160"
     CDS             61..1056
                     /locus_tag="VNN98_03160"
                     /inference="COORDINATES: protein motif:HMM:NF020039.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SMP-30/gluconolactonase/LRE family protein"
                     /protein_id="HWM61120.1"
                     /translation="MLKYLAPALCLLAAPALAQGLSIKKMDPALDSVIAPGAKIEKVA
                     TGFIFTEGPMWKDGKLWFSDVRGDKVRTFEPKAGDPAGGKVTVILKDSGGMKDAPPSC
                     NFGSNAMITDKDGSILLTRMAIGTIERMDDKGGLKPFLSKYEGKRFNSPNDLLFTADG
                     ALWFTDPSFGLPKMDADPAKQLKYNAVWRYAGGKLTPVITDMTQPNGIGFSPDGKTLY
                     VSNSMPDMYLRAYDVGADGKLSNPRTVIKYPGSAPDVPDGLKVDSAGNIWSTGPGGVR
                     IISPKGKVLGQLVIPEIVANVGFAEDGKTVYLTGSTSLYRLHSKIAGEIPMYYRK"
     gene            complement(1059..1379)
                     /locus_tag="VNN98_03165"
     CDS             complement(1059..1379)
                     /locus_tag="VNN98_03165"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="YMGG-like glycine zipper-containing protein"
                     /protein_id="HWM61121.1"
                     /translation="MVILITSLELSGCGTDPGDRALSGGLLGAGGGAAIGAIAGNAGE
                     GALIGGLGGLAIGALTSSDAINLGTPPWRHTAASYRHRKYARSDCATHETQTQRITTC
                     PKTR"
     gene            complement(1528..2634)
                     /locus_tag="VNN98_03170"
     CDS             complement(1528..2634)
                     /locus_tag="VNN98_03170"
                     /EC_number="3.1.1.103"
                     /inference="COORDINATES: protein motif:HMM:NF012371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase domain-containing protein"
                     /protein_id="HWM61122.1"
                     /translation="MRIACFAALLASTPAAAQPAITAADFAPVSSIVAQEIAKRHIPG
                     AVILIGNSGADLYRQAFGTRVLGARSMTMDTIFDLASLTKPIATTTAVMQLVEAGKLD
                     LDAPAARYWPAFAANGKADITLRQLLTHYSGLPPDLDLSRDWKGYDTAMAMIVAAKPR
                     GADYLYSDLNFLILGELVRRVSGQPLDRYCRQHIFRPLGMRDTGFLPSPALHDRIAPT
                     EDNQGHVHWGDVHDAAARMMGGVAGHAGLFSTADDLKVFARMLLNHGEANGVRILSPE
                     SVDRMTRIQSPPRSHTRGFGWDLGGPDGDTYFPVDSYGHLGFTGTMIWISPRLGIFAI
                     VLTHRVYPDGNGEAGPLRQAILDLLGKLPQQTAN"
BASE COUNT          538 a          834 c          912 g          531 t
ORIGIN      
        1 catttgccca acaccgttct tgagacttag acttcagaaa aataattgga ggggattgcc
       61 atgctgaaat atctcgcacc tgcactgtgt ctgcttgctg cgcctgcttt ggcgcaaggc
      121 ctgtcgatca agaagatgga ccccgcgctg gattctgtga tcgcgcccgg cgccaagatc
      181 gagaaggtcg ccaccggttt tatcttcacc gaaggcccga tgtggaagga cggcaagctg
      241 tggttttccg acgtgcgcgg cgacaaggtg cggaccttcg aacccaaggc gggcgatccg
      301 gctggcggca aggtgacggt aattctgaag gactcgggcg gcatgaaaga tgcgccgccc
      361 agctgcaatt tcggctccaa tgccatgatc accgacaagg atggctcgat cctgctgacc
      421 cgcatggcga tcggcaccat cgagcggatg gacgataagg gcggactcaa accgttcctg
      481 tccaagtatg aaggcaagcg cttcaacagc cccaacgacc tgctgttcac cgccgacggc
      541 gcgttgtggt tcaccgatcc ttccttcggc ctgcccaaga tggatgccga cccggcaaag
      601 cagctgaaat acaatgcggt gtggcgctat gccggcggca agctgactcc cgtgatcacc
      661 gacatgaccc agcccaacgg tatcggtttc tcgcccgacg gcaagacgct gtatgtttcc
      721 aactcgatgc ccgacatgta tctgcgcgcc tatgacgtgg gcgcggacgg caagctgtcc
      781 aacccgcgca cggtgatcaa atatcccggc agcgcgcccg acgtgccgga cgggctgaag
      841 gtggatagcg cgggcaatat ctggagcacc gggccgggcg gggtgcggat catttcgccc
      901 aagggcaaag tgctgggcca gctggtgatt ccggagatcg tcgccaatgt cggcttcgcc
      961 gaggacggca agacggttta tctcacggga tcgaccagcc tctatcggtt gcattccaag
     1021 atcgcgggcg aaatcccgat gtattaccgc aagtagtcct acctggtttt ggggcaggtg
     1081 gtgatgcgct gagtctgggt ttcatgcgtc gcgcaatcgc tgcgggcgta tttgcggtga
     1141 cgataactcg ccgccgtgtg acgccagggc ggcgtcccca gattgatggc gtcggaactg
     1201 gtcagcgcgc caatcgccag gccgcccagg ccgccgatca aggcgccttc tccggcgttt
     1261 cctgctatgg cgccgatcgc agcgccgccg ccggcgccca gcaggccgcc tgacaaagcc
     1321 cggtcgcccg gatcggtgcc acaacctgag agttccaggc tggttatcag gataaccacc
     1381 agtcctgcgg atttcagctg cctattcgtg agcatttgac acctcgcctg ttccgaaccg
     1441 gtttcaaaac gcacggtgga aagaagtgtt ccggcggttc cggccggcgc ggcggcgcgc
     1501 cactttttgg acatcatgta cgtccgccta attggcggtt tgctggggaa gcttgccgag
     1561 cagatcgagg atggcttggc gcagcggtcc ggcttcgccg ttcccgtccg gatagacgcg
     1621 gtgcgtcagg acgatggcaa agatacccaa tcgcgggctg atccagatca tggtcccggt
     1681 gaaccccaga tgcccatagg agtcgactgg gaaataggtg tctccgtccg gaccgcccag
     1741 gtcccagccg aagccgcggg tatggctgcg gggcggggat tgaatgcggg tcatccggtc
     1801 tacgctctcg gggctgagaa tacgcacgcc gtttgcttcg ccatggttca gcagcatgcg
     1861 ggcgaaaact ttcaagtcgt cggcggtcga aaacaggccg gcatgcccgg cgacgccgcc
     1921 catcatgcgt gccgcggcgt catgcacatc gccccagtga acatgccctt gattgtcttc
     1981 cgtgggcgca atgcggtcat gcagcgcggg cgacggcagg aagccggtgt cgcgcatgcc
     2041 cagggggcga aaaatatgct ggcggcaata gcgatcgagc ggttggccgg agacgcggcg
     2101 aacaagctca cccagaatta gaaagttgag atcgctgtag agatagtcgg cgccgcgggg
     2161 cttggccgcc acgatcatcg ccatcgctgt gtcgtagccc ttccaatccc tggatagatc
     2221 cagatcgggc ggcaggccgg aataatgcgt cagcagttgg cgcaaggtaa tatcggcctt
     2281 gccgttggcg gcgaatgccg gccaatagcg ggcggccggc gcgtcgagat cgagctttcc
     2341 cgcctccacc aattgcatga cggccgtggt ggttgcgatg ggtttggtga gggaggccag
     2401 gtcgaaaatc gtgtccatag tcatggacct tgcgcccagc acgcgggtgc cgaaggcctg
     2461 gcggtagaga tccgcaccgc tgttgccgat caggatcaca gccccgggaa tatggcgctt
     2521 ggcgatctcc tgcgccacga tagatgagac cggtgcgaag tcggcggcgg tgatcgcggg
     2581 ctgtgcggcg gcgggcgtac tggccagcaa ggcggcgaaa cacgcaatcc gcacgcctgc
     2641 cgctgatccg ccccaagcca tttggtaatc taacatgcgc cggtgtagag ttccaatgaa
     2701 ggggcagggc gggcgtcatg gctaaacctt ggctatcgcc gggtgcgcga tggatggcaa
     2761 ttccattcat tttcgctgcg tcgtccttcg cgcatgccgc agaccaatcg cgtga
//
LOCUS       DATMDK010000163         2280 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2589492,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000163 DATMDK010000000
VERSION     DATMDK010000163.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2280)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2280)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2280
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2589492"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            273..656
                     /locus_tag="VNN98_03175"
     CDS             273..656
                     /locus_tag="VNN98_03175"
                     /inference="COORDINATES: protein motif:HMM:NF025197.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4189 domain-containing protein"
                     /protein_id="HWM61123.1"
                     /translation="MLLMVLLALAGTVYWKFFAKPQLGPYGAIAMSDSSLTYGGAWGY
                     PDPIAAYKRSIAECNKAAGSNDCVVKVTLKDNCGALAMSIERNASFLVQGRDQVTATA
                     TAMEQCQATGASDCTIHENICSSDS"
     gene            complement(871..1353)
                     /gene="rlmH"
                     /locus_tag="VNN98_03180"
     CDS             complement(871..1353)
                     /gene="rlmH"
                     /locus_tag="VNN98_03180"
                     /inference="COORDINATES: protein motif:HMM:NF000989.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006364 - rRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (pseudouridine(1915)-N(3))-methyltransferase RlmH"
                     /protein_id="HWM61124.1"
                     /translation="MRLWIYTIGHMRGTPEGQLCEDFCDRARKMGRNMGFTAVALEEL
                     PVSKHREMAARMKDEAERLVARLPQGAHIIVLDARGKGMTSEDFAEMLGSLRDVGTKD
                     LAFVIGGPDGLAPLPGKKAGRSLAFGPQTWPHLLARALLTEQVYRALTILAGHPYHRA
                     "
     gene            complement(1368..1670)
                     /gene="rsfS"
                     /locus_tag="VNN98_03185"
     CDS             complement(1368..1670)
                     /gene="rsfS"
                     /locus_tag="VNN98_03185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019977573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043022 - ribosome binding [Evidence IEA];
                     GO_process: GO:0017148 - negative regulation of
                     translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome silencing factor"
                     /protein_id="HWM61125.1"
                     /translation="MTSLDDNKAENIVTIDLEGRSALCDAAVIASGRSSRHVSAMADH
                     LARRLKECGYGTRPISGQGQGDWVLVDAGDVIVHLFRPEVRDYYDLEGMWSVGSRK"
     gene            1708..1899
                     /locus_tag="VNN98_03190"
     CDS             1708..1899
                     /locus_tag="VNN98_03190"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61126.1"
                     /translation="MIGATAAFLGAIFFAGFFTGFFAGFLTTFLTVFLADFLAGTFFA
                     AFALAAGFLTALRVRAWVL"
     gene            complement(1901..>2280)
                     /locus_tag="VNN98_03195"
     CDS             complement(1901..>2280)
                     /locus_tag="VNN98_03195"
                     /inference="COORDINATES: protein motif:HMM:NF013621.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61127.1"
                     /translation="PRTIVTGIEARLRTRFTIDTVTALKRRFPQVTFVWLMGTDNLEQ
                     FSRWRRWQEIAAALPIAVVRRPGSVLASLHAPLARRLGLARRLGPAPSLVVLDGPRSH
                     ESSTELRAEALGAAAEAMLNLTP"
BASE COUNT          417 a          703 c          711 g          449 t
ORIGIN      
        1 cgtatcggac acggcaaagc cggggctcgc cgcgccagcg ggtgccttgc gcttgatggc
       61 ggacgtctcg actcggccag gacctttgat ttccatggga atgtcccact gcgacacacc
      121 agcatccctc atcatggtta aggaagggtt tagccgtgcc ggggcggaac gcccaagggg
      181 gctaaagcct ggcacggggc ttgaaggatg cagaccgaca ttagaaggag tgattgccca
      241 tgtatggcga tcgtagaaaa tctttgacga ttatgctgct catggtgctg ctggcgctgg
      301 cgggcacggt ctattggaag ttctttgcca agccgcagct gggcccttat ggcgccatcg
      361 ccatgtcgga cagctcgctc acctatggtg gggcctgggg ttatcccgat ccgatcgcgg
      421 cctataagcg ctcgatcgct gagtgcaaca aggccgccgg cagcaacgac tgtgtggtca
      481 aggtcaccct gaaggacaat tgcggtgcgc tggcgatgag tatcgagcgc aacgcctcct
      541 tcctggtaca gggccgcgac caggtcaccg ccaccgccac cgccatggaa cagtgccagg
      601 cgaccggcgc cagcgactgc accattcacg agaatatctg ttcgagtgat tcataagttg
      661 tcttccctct ccccttgagg gagaggaaga aaaatcattg ggttagcggc gcgcagcggc
      721 gctcaaccca ttgatttttc aggtgagggg tgagttgggc gccgtaaccc ctcacctagc
      781 aaaatctaag cacttagctc cgcatgcgct ccgctaagtg caagattttg cgtcctctcc
      841 ctcaagggga gaggagaatt tggtcgaact ttaagctctg tggtacggat gccccgccag
      901 gatggtgagc gcgcgataga cctgttcggt caatagcgcg cgcgccagca aatgcggcca
      961 ggtctgggga ccgaaggcaa ggctgcggcc cgccttcttt cccggcaagg gcgcaagccc
     1021 atccggcccg ccgatcacaa aggccaggtc cttggtgccg acatcgcgca gcgagcccag
     1081 catctcggca aagtcctcgg atgtcatgcc cttgccgcgc gcatccagca caatgatatg
     1141 cgcgccttgc ggcaatcgcg ccaccagccg ctcggcctcg tccttcatcc gcgccgccat
     1201 ctcgcgatgc ttggagacgg gcagttcctc caacgccacg gcggtaaagc ccatattgcg
     1261 tcccatcttg cgggcgcggt cgcagaagtc ttcgcacagc tggccttccg gcgtgccgcg
     1321 catatggccg atggtgtaaa tccagagtcg catttaggag cgccgcatta cttgcggctg
     1381 ccgaccgacc acatgccttc caggtcgtaa tagtcgcgca cttccgggcg gaacagatgc
     1441 acgatcacgt ccccggcatc caccagcacc cagtcgccct gcccctggcc gctgatcggc
     1501 cgcgtgccgt aaccgcattc tttcagccgc cgcgccagat gatcggccat ggcgctgaca
     1561 tggcgcgagg agcgccccga agcgatcacc gccgcatcgc acagcgccga ccggccttcc
     1621 aggtcgatgg tgacgatatt ctcggccttg ttatcgtcca gcgaggtcaa aatccggttc
     1681 agaaggtcgc tgggcggcgc gggttttttg atcggcgcga cagcggcctt tttgggcgca
     1741 attttcttcg ccggcttctt taccggtttc ttcgcgggtt ttttgacgac cttcttgacg
     1801 gtctttttgg cggatttttt ggccgggact tttttcgcgg ctttcgcctt ggcggcgggt
     1861 ttcttgacag ctttgcgagt cagggcatgg gtcctttaaa tcagggggtg aggtttagca
     1921 tggcctcggc ggcggcacca agggcctcag ccctgagttc ggtcgagctt tcgtgggaac
     1981 gcggtccatc cagcaccacc agcgacggcg cgggccccag gcgccttgcc aggcccaaac
     2041 gccgcgccaa aggcgcatgc agcgaggcca gcacggaacc tggccggcgc accaccgcga
     2101 tgggaagggc ggcggcaatc tcctgccagc gccgccagcg ggaaaactgc tccagattgt
     2161 cagtgcccat cagccagaca aatgtaactt gggggaagcg gcgcttaagc gccgtcacgg
     2221 tatcgatggt aaagcgggtg cgcagacggg cttcgatgcc ggtgacgatg gtgcgggggc
//
LOCUS       DATMDK010000164         2356 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1220873,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000164 DATMDK010000000
VERSION     DATMDK010000164.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2356)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2356)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2356
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1220873"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..763
                     /locus_tag="VNN98_03200"
     CDS             <1..763
                     /locus_tag="VNN98_03200"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012744.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HWM61128.1"
                     /translation="LKHYWFLAGLEKRLTRTLRLFYGACREVYVPSDSVAETLLADGL
                     KNNFKPWPRGIDTARFDPARRSPAWRARHGIGAGELVILHVSRLVREKRLDTLTAALN
                     KITVPHRVVIVGEGPDRGFAQAQLPHALFTGFLDGDDLAAAYAASDIFVFPSDSESFG
                     NVTLEAMASGLACVCADATGSRSLVMAGETGFLAPADDADAFARAITLLAQDTGLRQR
                     MGQAARARSLAFSWDETLARMLGYYRALLPGTPDL"
     gene            760..1932
                     /locus_tag="VNN98_03205"
     CDS             760..1932
                     /locus_tag="VNN98_03205"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024831.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HWM61129.1"
                     /translation="MKIVDVCEFYSPTGGGVRRYINQKLALAGRFGHQLTVIAPGAET
                     RMEAAHGGTIAWIKSPHLPFDRNYRMFWNHQQVWRTLDMLAPDLVEGSSPWRGGWLAA
                     RWPGKAVKVFFMHADPVAVYPQTFLGGLLGPERVDRLFGFFWRYLNRLNSNYDAAIVT
                     NPALAERFAGFGLENIQIAPFGVERSKFSPSFFDATARREMLATCGLDADAKLLIAVG
                     RHHPEKRLRTIIQAVSRAQASRKIGLYIAGDGFLRASVERWALNARNVYVAGQINDAD
                     QLATVMASADALIHGSAAETFGLVLAEALCSGTPLIVPDAGASATFAGPGYAQTYRAG
                     DAVDAAGAILRLLAGSRADQSRAALAAADAQVFNVEQHFETLFQIYERIVAERSTR"
     gene            complement(1896..>2356)
                     /locus_tag="VNN98_03210"
     CDS             complement(1896..>2356)
                     /locus_tag="VNN98_03210"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61130.1"
                     /translation="AKTVTAISLLGMGYFALYPFGVRPHMPMARYLYRHWPGAVYSLA
                     PAFQSYPIYRPARFKSERLKGAAQLEALLNKGPVALMSETPVPPDLPANARAILLYSE
                     FPLTRFGYGQAGADYIRGYTAFAARHGFLKLLPLYWYTLYRVERSATIRS"
BASE COUNT          378 a          779 c          784 g          415 t
ORIGIN      
        1 tctcaagcat tattggtttc ttgccgggct ggaaaagcgg ctgacccgca ccctgcggct
       61 tttctacggc gcctgccgcg aggtctatgt cccctcagac tccgtcgccg aaacgctgct
      121 ggccgatggc ttgaaaaaca atttcaagcc ctggccgcgc ggcatcgaca ctgcccgctt
      181 cgatcccgcc cggcgcagcc cggcctggcg cgcccggcat ggtatcggcg ccggcgaact
      241 ggtgatcctg catgtctccc gcctggtgcg ggagaagcgg ctggacacgc tgacagcggc
      301 gctgaacaag atcacggtcc cccaccgggt ggtgattgtg ggcgagggac cggatcgcgg
      361 ctttgcgcag gcgcagcttc ctcacgcgct gttcaccggg ttcctggacg gcgatgacct
      421 ggcggcggct tatgccgcgt ccgacatctt cgttttcccc agcgacagcg aaagtttcgg
      481 caatgtcacc ctggaagcca tggcgtccgg cctggcttgc gtctgcgccg acgccaccgg
      541 cagccgttcg ctggtgatgg cgggcgagac tggctttctg gccccggcgg atgacgccga
      601 tgcctttgcc cgcgccatca cgctcctggc ccaggacacg ggcctgcgcc agcgcatggg
      661 gcaggccgcg cgcgcccgca gcctggcctt ttcctgggat gagacactgg cgcgcatgct
      721 gggctattat cgcgcgctgc tgcccgggac tcctgacctg tgaaaatcgt ggacgtttgc
      781 gagttctatt cgccgaccgg cggcggcgtg cggcgctata tcaaccagaa gctggcgctt
      841 gcggggcgct tcggccatca gttgaccgtg atcgcgccgg gcgcggagac ccgcatggaa
      901 gccgcccatg gcggcaccat cgcctggatc aaaagccctc acctgccctt tgaccgcaac
      961 tatcgcatgt tctggaatca ccagcaggtg tggcgcaccc tggacatgct ggcgcccgac
     1021 ctggtggaag gctcctcgcc ctggcgcggc ggctggctgg cggcgcgctg gcccggcaag
     1081 gcggtgaaag tgttcttcat gcatgccgac ccggtggcgg tgtatcccca gaccttcctg
     1141 ggcgggctgc tcggaccgga gcgggtggac cggctgttcg gtttcttctg gcgctatctc
     1201 aaccgcctca acagcaatta cgacgctgcc atcgtcacca atcccgcctt ggccgagcgc
     1261 tttgccggtt tcggtctgga gaatatccag atcgcgccct tcggcgtgga gcgcagcaaa
     1321 ttctcgccca gcttcttcga tgccacggcg cggcgcgaaa tgctggcgac ctgcgggctg
     1381 gacgccgacg ccaagctgct gatcgcggtc ggacgccatc acccggaaaa gcgcctgcgc
     1441 accatcatcc aggccgtcag ccgggcccag gccagccgca agatcggcct ttatatcgcg
     1501 ggcgacggct tcctgcgcgc ctcggtggaa cgctgggcgc tgaacgcgcg caacgtctat
     1561 gtcgccggcc agatcaacga cgccgatcag ctggcgacgg tgatggccag tgccgacgcc
     1621 ctgatccatg gctcggcggc ggaaacattc ggcctggtgc tggcggaagc cctgtgttcg
     1681 ggcacgccgc tgatcgtgcc ggacgcgggc gcctcggcca cctttgcggg accgggctat
     1741 gcccagacct atcgcgccgg tgatgcggtg gacgctgccg gcgccatcct gcggctgctg
     1801 gcgggcagcc gcgccgacca gtcgcgcgcc gcgctggcgg cggcggatgc ccaagtcttc
     1861 aatgtcgaac agcatttcga gacgctgttt cagatctatg agcggatcgt ggcggaacgc
     1921 tccacgcgat agagcgtgta ccagtaaagc ggcagcagct tgagaaagcc gtggcgtgcg
     1981 gcaaacgccg tatagccgcg aatataatcc gcgccggcct ggccgtagcc gaaacgggtg
     2041 agcgggaatt ccgaatagag cagaatggcg cgggcatttg ccggcagatc cggcggcacc
     2101 ggtgtttccg acatcagtgc gaccggcccc ttgttcagca gcgcctccag ttgcgccgcg
     2161 cccttcagtc tttcggattt gaacctggcc gggcgataga tcggatagga ctggaaagcc
     2221 ggcgccaggc tgtaaaccgc gcccggccag tgacggtaga gatagcgcgc catcggcatg
     2281 tgcggccgca cgccgaaggg atagagtgcg aaatagccca tgcccagcag cgaaatcgcc
     2341 gtgacggtct tggcgg
//
LOCUS       DATMDK010000165         3489 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1684900,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000165 DATMDK010000000
VERSION     DATMDK010000165.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3489)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3489)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3489
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1684900"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(167..1852)
                     /locus_tag="VNN98_03215"
     CDS             complement(167..1852)
                     /locus_tag="VNN98_03215"
                     /inference="COORDINATES: protein motif:HMM:NF012772.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GGDEF and EAL domain-containing protein"
                     /protein_id="HWM61131.1"
                     /translation="MLNAALQKRTDVAQLGTLEDELRLRLAAQAAGCAAFNWDAAAGT
                     IRWDGATDILPQHFDTANARSFLDGTLPERRADLQAVLESRDTASVFFLVDVEIASAL
                     GAVNFTMTGTRIPGENGHTAQLVGFMRDTTERCREVRRLTYLATRDELTGHLNRNALR
                     EELSGAIESAKAENRNCAFLVASIDRLAMINDSFGFDAGEEVIMGVGDRLARTLRGSD
                     IIGRTAGNKFGVLLKNCRENEIAVVAARLRAAVRANGIETRSGLVAGTCSVGAVWLPQ
                     AASTSQEAMLRAEQALDKARANGRDGFAAYQPSPQRETARLRQMQIADEVVLALKENR
                     LKLAYQPIVTARSRKVSHYECLLRMIKPDGSVMAAGLFVPATEQMGIVHLVDRFALEA
                     TIAQLKAHKDLTLAVNVSGTAASDPAWLQDFVDTVRSEQAVAPHLIVELTETAALHHF
                     EENSRFVSQLREVGVRVAIDDFGAGYTSFRNLQMLHVDTVKIDGSYVKDLSQSPENQV
                     FVRTLVGLARSFNIKTVAEWVGSNEDAALLQSFGVDYFQGFHFGVPLLDQGWG"
     gene            complement(2261..2857)
                     /locus_tag="VNN98_03220"
     CDS             complement(2261..2857)
                     /locus_tag="VNN98_03220"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61132.1"
                     /translation="MAFDSLDLLAALVLFAACIGAWLLAAPLRAPARLYLRFAAMLFA
                     ALSVAALVGLADVAALFLLPLGAASLMVSALAQFARPLPVFAASAALVAALASGLAAL
                     LSGITMFALAPAMFAGLVVIAASLNSVAAIPVLAGASLLASGLVLLEQGGRAGMFLFC
                     AAALVGLAKPSAKQKRSALAVEQQRLTRAADAAISGLH"
     gene            complement(2954..>3489)
                     /locus_tag="VNN98_03225"
     CDS             complement(2954..>3489)
                     /locus_tag="VNN98_03225"
                     /inference="COORDINATES: protein motif:HMM:NF012897.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61133.1"
                     /translation="FANIRIRNEMMGGAEGGNTIYYAKPDAPGETMSIFDAAQAYKKD
                     GHGTVVFGGKEYGTGSSRDWAAKGPKLQGVRAVVTESFERIHRSNLIGMGVAPFCFEA
                     GKTRKDYGLTGREVVDIPGLSGTLKPRQKMEATVHRPDGSSFKLPLYLMILTADEVAY
                     FKNGGILPYVLRNLLVA"
BASE COUNT          665 a         1114 c         1119 g          591 t
ORIGIN      
        1 aacagcaaag tcacggcttg ggagaaatag ctcgaacccc atcctcccct tgagggaggg
       61 tcgaaatttg ctgccgcaaa tttcggggag ggggcatacc ccctaacccc tcctcgaaaa
      121 accctcacgg gtttttcgat cctccctcaa ggggaggatg aagaagttaa ccccagcctt
      181 gatccagcag cggcacgccg aagtggaagc cctggaaata atcgacgccg aaactctgca
      241 gcagcgccgc gtcctcgttc gaaccgaccc attcggccac cgtcttgatg ttgaagctgc
      301 gcgccagccc caccagggtg cgcacaaaga cctggttttc cggcgactgg ctgagatcct
      361 tcacatagga accgtcgatc ttgacggtat cgacatgcag catttgcagg ttgcggaagg
      421 aggtatagcc ggcgccgaaa tcgtcgatcg ccacccgcac gcccacttcg cgcaactgcg
      481 acacgaaacg cgaattctcc tcgaaatgat gcagggcggc ggtttcggtc agctccacga
      541 tcaggtgcgg cgcgactgcc tgttcggaac gcacagtgtc cacgaaatcc tgcagccagg
      601 cgggatcgga ggcggcggtg cccgaaacgt tgaccgccag ggtgagatcc ttgtgcgcct
      661 tgagctgggc gatggtggct tccaaggcaa agcggtccac cagatggacg atgcccatct
      721 gctcggtggc gggcacgaag agaccggccg ccatcacgct gccatcgggc ttgatcatgc
      781 gcagcaggca ttcgtaatgc gataccttgc gcgaacgcgc cgtgacgatg ggctggtagg
      841 cgagcttcag ccggttctcc ttcagcgcca ataccacctc gtcggcgatc tgcatctgac
      901 gcaggcgcgc ggtctcgcgc tggggtgagg gctggtaggc ggcgaagccg tcgcggccat
      961 tggcgcgcgc cttgtccagc gcctgttcgg cgcgcagcat ggcttcctgg ctggtggaag
     1021 cggcttgggg cagccacacc gcgcccacgc tgcaggtgcc cgccaccagt ccggagcggg
     1081 tttcgatgcc gttggcgcgc acagcggcac gcagccgcgc cgccaccacc gcgatctcat
     1141 tctcgcggca gttcttcaaa agcacgccga acttgttgcc ggcggtgcgg ccgatgatat
     1201 cgctgccgcg caaggtgcgg gccaggcggt cgcccacgcc cataatgact tcctcgccgg
     1261 catcgaagcc gaaactgtca ttgatcatcg ccaggcggtc gatcgaggcg acgaggaaag
     1321 cgcagttgcg gttttccgcc ttggcggatt cgatcgcgcc cgacagctct tcgcgcaagg
     1381 cgttgcggtt gagatggccg gtcagttcgt cgcgcgtcgc caggtaggtc aggcggcgca
     1441 cttcgcggca gcgctcggtg gtgtcgcgca tgaatccgac cagctgcgcg gtgtggccgt
     1501 tctcgccggg gatgcgggtg ccggtcatgg tgaaattgac cgcgcccagc gcgctggcga
     1561 tttcgacatc gaccagaaag aagacggagg cggtgtcgcg ggattccagc actgcctgaa
     1621 ggtcggcacg ccgttcgggc agggtgccgt ccaggaagct gcgcgcgttg gcggtgtcga
     1681 aatgctgcgg caggatgtcg gtggcgccgt cccagcggat ggtgccggcg gctgcgtccc
     1741 aattgaaggc ggcgcagccc gcggcctggg ctgccaggcg caggcgcagt tcgtcctcca
     1801 gcgtgccaag ctgggcgacg tcagttcgct tctgcaatgc ggcgttcaac accaaccacc
     1861 atccatggcc ggtttctcca gccttttcgt gattggagta tccctgggcg gacttaaaaa
     1921 accggaaatt ccgcggcggc tgcgagatgg aacaaggctt gccttgtagc cctatatgcg
     1981 cgtgaccgga ccctttgata cgactgcccg tagcggcctt aaggccctcg ctgcatcttc
     2041 gcgcgctatc gaaaaatcca gcgcttccag cgccttggga catgagcggc aaagctttaa
     2101 ccacgaaggc gccaaagccg tgccgcggtt gcaggtcgaa ctcgtgtgtc aggacgagac
     2161 gcagggcttc gacccgtttt gggacgcacc cagattgttg ccgacattcg ttgcgcaagt
     2221 gatgggccag gtcatgccgg aacggcgcga caccagcgta tcagtgcaga ccgcttatgg
     2281 cagcgtccgc tgcccgcgta aggcgttgct gctcgaccgc aagagctgat cgcttctgct
     2341 ttgcagacgg cttggccagt cctaccaggg cggcggcgca gaacagaaac atccctgccc
     2401 gcccgccctg ctccagcaac accagccctg aggccagcag cgacgcgccc gccagaaccg
     2461 gaatggcggc aacgctgttc agcgacgcgg caataacgac caggcccgca aacatcgccg
     2521 gcgccagcgc gaacatcgtg atgcccgaca gcagcgcggc caaaccgctg gccagtgccg
     2581 ccaccagcgc cgcactggcg gcgaagacag gcagcgggcg ggcgaactgc gccaaggccg
     2641 acaccatcag cgaggcggcg cccagcggca gcaggaacaa ggccgcgaca tcggcgagcc
     2701 caacaagtgc ggccacgctc agggcggcga acagcatggc ggcaaaccgc aaatagagac
     2761 gtgccggggc acgcaacggc gcggccagca accaggcgcc gatacaggcg gcgaacagca
     2821 ccaaggccgc gagtagatcg agagaatcaa aagccatcac gcctcatcat gtcatggccg
     2881 ggcttgaccc ggccatccat ggtgcagcgt tgagatggat ggccggctcg gaggccggcc
     2941 atgacaaatg gtgttatgcg acgagcagat ttctcagaac atacggtaag attccgccat
     3001 tcttgaagta cgccacttca tccgccgtca agatcatcag atacagcggc agcttgaagc
     3061 tgctgccgtc ggggcgatgc acggtggctt ccatcttctg gcgtggcttg agggtgcccg
     3121 acaggcccgg aatgtccacc acctcgcggc ccgtgagacc gtaatccttg cgagtcttgc
     3181 ccgcctcgaa acagaagggc gccaccccca tgccgatcag gttggagcgg tggatgcgct
     3241 cgaagctttc ggtgaccacg gcgcgtacgc cctgcagctt ggggcccttg gccgcccagt
     3301 cgcgcgacga gccggtgcca tattccttgc cgccgaacac caccgtgcca tggccgtcct
     3361 tcttataggc ctgggcggcg tcgaaaatgg acatggtctc gcccggcgca tccggtttgg
     3421 cgtaatagat ggtgttgccg ccttccgccc cgcccatcat ctcgttgcgg atacggatat
     3481 tggcgaagg
//
LOCUS       DATMDK010000166         2183 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1912388,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000166 DATMDK010000000
VERSION     DATMDK010000166.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2183)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2183)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2183
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1912388"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..673
                     /gene="lptD"
                     /locus_tag="VNN98_03230"
     CDS             <1..673
                     /gene="lptD"
                     /locus_tag="VNN98_03230"
                     /inference="COORDINATES: protein motif:HMM:NF016348.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA];
                     GO_process: GO:0010033 - response to organic substance
                     [Evidence IEA];
                     GO_process: GO:0061024 - membrane organization [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="LPS assembly protein LptD"
                     /protein_id="HWM61134.1"
                     /translation="HNVFSFNQVPGYDLLESGPRANVGAMAEALFPGGKVEAQVGQTY
                     RLKPDPLFASFSGSSGTSSDVVGSLSVKFPHFDVTDRVDVDRGNGNVRRHEIYVTGSY
                     DRSSLQVSYVHLPQSVTSLGLPSREEVNTQADVNVWRNWQIFAAAQRDLTNNQFLNTE
                     YGLGYEDECLAISLAYRRKYTSDVVLGVPPSTSVILRFSLKTGDSPIQPFSLFPRDVF
                     AMTHP"
     gene            902..>2183
                     /locus_tag="VNN98_03235"
     CDS             902..>2183
                     /locus_tag="VNN98_03235"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: protein motif:HMM:NF025010.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HWM61135.1"
                     /translation="MRIATTLLLGAAVLVGASVPLAAQDAGFKPAPAVAPLKAPARQA
                     AATPAEKPAATLAKPAENTSAVATTEDAPTADAAETPAADKSAVQEAKNNDASMIDAT
                     ADKNAGDSDSIVATVNDESISDFELRQRVSLYLALNGFTQQLTPAQRTRIRTQILEVL
                     ESEKVQLQEAVKKKITVSPVEVDKRINGMMQDNHFNLDQLRQNLAGAGASEDALRAQI
                     TASIAWQKAVQDEYGDRVNITPEMVDVEMARYAEGANKPHYHVMEIFLPVDKPEQDAK
                     VKKDAEEVEAQLHQGASFPVVARQFSQHPSAATGGDMGWINEGQLAPELNAALAKMDA
                     GSVSDPIRSTGGYYVLGLRERQEPLGTKIAEAPTAGTGPAGTLPLARLLFPVNPRAPK
                     EQLDQIVKVAVQIQQHYQGCGQLDELHGKMTGTVY"
BASE COUNT          438 a          703 c          662 g          380 t
ORIGIN      
        1 ccataatgtc ttcagcttca accaggtgcc gggctacgac ctgctggaaa gcgggccgcg
       61 cgccaatgtc ggcgccatgg ccgaagcgct gtttcccggc ggcaaggtgg aggcgcaggt
      121 cggccagacc tatcgcctca agcccgatcc gctgttcgcc agcttttccg gcagcagcgg
      181 cacttcgtca gacgtggtgg gcagcctctc ggtcaagttc ccgcattttg acgtcaccga
      241 ccgggtggat gtggatcggg gcaacggcaa tgtgcggcgg catgaaattt acgtcacggg
      301 cagttatgac cgctcctccc tgcaggtgag ctatgttcat ctgccccagt cggtcaccag
      361 cctgggcctg cccagccgcg aggaagtcaa cactcaggcc gacgttaatg tttggcgcaa
      421 ctggcagatt ttcgctgccg cccagcgcga tctgaccaac aaccagttcc tcaacactga
      481 atacggcctg ggctatgagg acgagtgcct ggccatttcc ctggcctacc ggcgtaaata
      541 tacttccgac gtggtcctgg gcgtcccacc ctccacttcg gtgattctgc gcttcagcct
      601 gaagaccgga gacagcccga tccagccatt cagcctgttc ccgcgagatg ttttcgcgat
      661 gacacatccg tagtcccttc tatcaaaaaa gcctgcttcc gcgcgttttt tttgattacc
      721 cctccggcct tcgcgggccc cagggcccgc tacggccacc tccccttaag gcgctgcgcg
      781 ccaaggggag gaatgggtcc gtgttttcct tgatcgggcc gggaaattct ctattttggc
      841 agcaggttag aggatccggc ggagcgcctg ggtccgtcct ggccaaagat caagattgac
      901 gatgcgaata gccacaaccc ttctgctggg cgctgccgta ctggttggcg caagcgtgcc
      961 gcttgcggcc caggacgccg gcttcaagcc ggctcccgca gtggcgccgt tgaaggcccc
     1021 tgccagacag gccgcggcca cccctgccga aaagcccgct gccactttgg ccaagccggc
     1081 ggagaatacc agcgccgtgg ccaccaccga agatgcccca accgccgatg ccgcggaaac
     1141 gccggccgca gacaagtccg cggtgcagga ggccaagaac aacgatgcca gcatgatcga
     1201 cgcgaccgcc gacaagaatg cgggggattc cgattccatc gtcgccacgg tgaacgatga
     1261 atccatctcc gacttcgagt tgcgccagcg cgtgtcgctg tatctcgccc tcaacggctt
     1321 tacccagcaa ttgacgccgg cacagcgtac ccgcatccgc acccagattt tggaagtgct
     1381 ggaatccgaa aaagtccagc tgcaggaagc ggtgaagaaa aagattacgg tcagcccggt
     1441 cgaggtggac aagcgcatca acggcatgat gcaggacaat cacttcaacc tcgatcagtt
     1501 gcgccagaac ctggccggcg ccggggccag cgaagatgcg ctgcgcgccc agatcaccgc
     1561 ctccatcgcc tggcaaaagg cggtgcagga cgaatatggc gaccgggtga acatcacccc
     1621 ggaaatggtg gatgtggaaa tggcgcgtta tgccgagggc gccaacaagc cccactatca
     1681 tgtgatggaa attttcctgc ccgtggacaa gcccgaacag gacgccaagg tgaaaaaaga
     1741 cgccgaggaa gtcgaggctc agttgcacca gggcgcatcc tttccggtgg tggcgcgcca
     1801 attcagccag catccctccg ccgcgaccgg cggcgacatg ggctggatca atgagggcca
     1861 gctggcgccg gaactgaacg ccgcgctggc caagatggat gccggcagcg tcagcgatcc
     1921 gatccgctcc accggcggct attatgtctt gggcctgcgc gagcgccagg aaccgctggg
     1981 caccaagatc gcggaggcgc ccaccgccgg caccggaccg gccggcaccc tgcccttggc
     2041 gcgcctgctg tttccggtga acccgcgtgc gcccaaggag cagctggacc agatcgtcaa
     2101 ggtggcggtg cagattcagc agcattacca gggctgcggt cagttggatg aactgcacgg
     2161 caagatgacc ggcacggtct ata
//
LOCUS       DATMDK010000167         3668 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_3049773,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000167 DATMDK010000000
VERSION     DATMDK010000167.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3668)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3668)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3668
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3049773"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1347)
                     /locus_tag="VNN98_03240"
     CDS             complement(<1..1347)
                     /locus_tag="VNN98_03240"
                     /EC_number="1.17.4.1"
                     /inference="COORDINATES: protein motif:HMM:TIGR02504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004748 - ribonucleoside-diphosphate
                     reductase activity, thioredoxin disulfide as acceptor
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylcobalamin-dependent
                     ribonucleoside-diphosphate reductase"
                     /protein_id="HWM61136.1"
                     /translation="MSEISAAIWDMKYRLKAPDGTPVDRDVADSWARVALALAEAEAP
                     GQRLARAQEFARALAGHKFLPAGRILAGAGTGRSVTLFNCFVMGTIEDSMDGIFSALR
                     EAALTLQQGGGIGYDFSSLRPKGAAVAGVGADASGPVSFMDVWDAMCRTIMSAGSRRG
                     AMMATLAVDHPDIEDFITAKRTPGRLSNFNLSVLVSDAFMAAVKADGDWALAFGGRTY
                     RTVKAKALWDTIMRSTYDYAEPGVIFIDRINSQNNLAYCETIAATNPCGEQPLPPYGA
                     CLLGSINLARLVRQPFEDAAALDMAELDRLVASAVRMMDNAIDVSRFPLEAQAREACA
                     KRRIGLGVTGLADALIFCKVRYGSPRSLELIRTWLAAISHAAYRASVELAKEKGPFPL
                     FDRDPYLARPHIQALPPDIYSAIAAHGIRNALLTSIAPTGTISLFADNVSSGIEPVF"
     gene            complement(1439..2131)
                     /locus_tag="VNN98_03245"
     CDS             complement(1439..2131)
                     /locus_tag="VNN98_03245"
                     /inference="COORDINATES: protein motif:HMM:NF013702.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipid acyltransferase family protein"
                     /protein_id="HWM61137.1"
                     /translation="MIAVRSALFLLWFAAVTAILSLIFLPVLVLPRAATVWLARLWSR
                     ATFWGLKVFTGIGFEIRGIPPRGPVLVASKHMSMWDTMALYLALEAPATVLKRELLHI
                     PFYGWFLWKATAIAINRGAGASALRKMAAAAQGVLAEGRPILIFPEGTRKKPGAPPDY
                     KPGVAGLYALLEVPCVPVALNSGVYWTGFLKRPGTIVLAFLEPIAPGLKRGAFMTLLE
                     QRIESATAELLP"
     gene            complement(2128..2697)
                     /locus_tag="VNN98_03250"
     CDS             complement(2128..2697)
                     /locus_tag="VNN98_03250"
                     /inference="COORDINATES: protein motif:HMM:NF014724.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdcF family protein"
                     /protein_id="HWM61138.1"
                     /translation="MRLFLTVIFLALLGYGLSFVLFVSNLPTTPTALPQADGIVALTG
                     GDERLDTAVALLERGVGKRLLVSGVSPETTKETVGKMSEGGPRFRCCADIGYAAEDTH
                     GNAQEAAQWTRDNHFDSLVIVTGRYHMPRTLREFSAVLPDVTLIAYPVEQSRIDLSGW
                     WMHSRTIQLLHREYVKYLASLVTTRLSRG"
     gene            complement(2744..>3668)
                     /locus_tag="VNN98_03255"
     CDS             complement(2744..>3668)
                     /locus_tag="VNN98_03255"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61139.1"
                     /translation="RSAGGIESNRMSDRATYILPRDKGAAPLDFVIAVMAFLAALALG
                     ASLVATRAAHGWQSGLSDRITVQVMPPEQGDVRSALDAETNAALAVLNTSPGIAHAAL
                     LSDAEINALVEPWIGKNGAVSGIPLPRLIDATITPGEELDVNALAAKLKQAAPHASMD
                     DHRRWIMRLRGLADAVRFSAYGILLLIAGATAAAVSFATRAGLDAHHEMVALLHQMGA
                     LPGFIARAVEWHYFLSALFAAALGTLFAALFFLGAGGLEIFGVEAVPFLPPLSLKWIE
                     IPWLLAVPMATSLIAWATARISVLSVVKAIY"
BASE COUNT          718 a         1199 c         1175 g          576 t
ORIGIN      
        1 aaagaccggc tcgatgccgc tggagacatt atcagcgaac agcgaaatgg tgccggtggg
       61 agcgatagac gtcagtagcg cattgcggat gccgtgcgcc gcgatggcgc tgtagatatc
      121 cggcggcagc gcctggatat ggggccgggc cagataaggg tccctgtcga acagcgggaa
      181 agggcctttt tccttggcca gttccacact ggcgcgatag gcggcatggc tgatcgccgc
      241 cagccaagtg cggatcagct ccaggctgcg cggcgaacca tagcggacct tgcagaagat
      301 cagcgcatcg gccaggccgg tcacgcccag cccgatgcgg cgtttggcgc acgcttcgcg
      361 cgcctgtgcc tccagcggga aacgcgacac gtcgatggca ttgtccatca tccgcacggc
      421 actggcgacc aagcggtcca gttccgccat gtccagcgcg gcggcgtcct cgaacggctg
      481 gcgcaccagc ctggccaggt tgatggagcc cagcagacaa gcaccgtaag gcggcagcgg
      541 ctgctcgccg cagggattgg tggcggcgat ggtttcgcaa taggccagat tgttctggct
      601 gttgatgcgg tcgatgaaga ttacgccggg ctcggcatag tcgtaggtcg agcgcatgat
      661 ggtgtcccac agcgccttgg ccttgacggt gcgatacgtc ctgccgccga aagccagcgc
      721 ccaatcgccg tcggccttca cggcggccat gaaggcatcg ctgaccaata ccgacaggtt
      781 gaagttggac aagcgtccgg gtgtgcgctt ggcggtgatg aaatcctcga tgtcgggatg
      841 atccaccgcc aaggtcgcca tcatggcgcc gcgccgcgag ccggcgctca tgatggtgcg
      901 gcacatggcg tcccacacat ccatgaagga gacgggtccg ctggcatccg cccccacgcc
      961 tgccacagcc gcgcccttgg gccgcaggct ggagaaatcg taaccgatac cgccgccctg
     1021 ttgcagcgtc agcgccgcct cgcgcaaggc ggagaaaatt ccgtccatcg aatcttcgat
     1081 ggtgcccatg acgaaacagt tgaacaacgt cacgctgcgg cccgtgccgg cgcccgccag
     1141 gattcgtccc gcgggaagga atttgtggcc tgccaacgcg cgggcgaatt cctgcgcccg
     1201 agccaggcgc tggcccggcg cttcggcctc agccagggcc agcgccacgc gcgcccagct
     1261 gtctgccacg tcgcggtcga cgggcgtgcc gtccggcgcc ttcagccggt atttcatgtc
     1321 ccagatggcg gccgagatct cgctcataac tgcgtaaaaa ccatatcggc gcggaacgcg
     1381 ccacctctat agataggcat ggttgcctaa cgctcaagat ggccaaaggt ttgaaatatc
     1441 agggtaaaag ttcggccgtg gcgctctcta tgcgctgttc caaaagcgtc atgaaagcgc
     1501 cgcgcttcag ccccggcgcg atgggctcca ggaaggccag cacgatggtg ccggggcgct
     1561 tgagaaagcc ggtccaatag acgccggaat tcagcgccac cggcacgcag ggcacctcca
     1621 gcagggcata gagtcccgcc acacccggtt tgtagtcggg cggcgcgccg ggttttttgc
     1681 gggtgccttc ggggaagatc aggatggggc ggccttcggc cagcacgcct tgcgccgcgg
     1741 cggccatctt gcgcaaggcg ctggcgcccg cgccgcgatt gatggcgatg gccgtcgcct
     1801 tccacaggaa ccagccatag aaggggatat gcagcagctc gcgcttgagc acggtagccg
     1861 gcgcctccag cgccagatac agcgccatcg tgtcccacat gctcatatgc ttggacgcca
     1921 ccagtacggg accgcgcggt ggtatcccac gaatttcaaa accgatgccg gtgaaaactt
     1981 tcaagcccca gaaggtggca cgcgaccaca gccgcgccag ccacaccgtg gcggcgcgcg
     2041 gcagcaccag caccggcagg aagatcagcg acaggatagc ggtgacggct gcgaaccaca
     2101 gcaggaacag cgccgaacgc acagcgatca tccgcgcgac aaccgcgtcg tcaccaggct
     2161 ggcaagatat ttgacatatt cgcggtgcag cagctgaatg gtgcgcgaat gcatccacca
     2221 gccgctgaga tcaatgcggc tttgctccac cggataggca atcaaggtga cgtcaggcag
     2281 cacggcggag aattcgcgca gggtgcgcgg catgtgatag cggccggtaa cgatcaccag
     2341 actgtcgaaa tgattgtccc gcgtccattg cgctgcctcc tgggcattgc catgggtgtc
     2401 ttcggcggca tagccgatat cggcgcagca gcgaaagcgc ggcccgcctt ccgacatctt
     2461 gcccacggtc tccttggtgg tctcagggct gacgccgctg accaacagcc gcttgcccac
     2521 gccgcgctcc agcaacgcca ccgccgtgtc cagccgctcg tcgccgccgg tcagcgccac
     2581 gatgccgtca gcctggggca gggctgtggg cgtggttggc aggttgctga cgaacagcac
     2641 aaagctgagc ccatagccca gcaacgccag aaaaataact gtcagaaaaa ggcgcaaatc
     2701 acggctcctg aatgagagac tagcaaaggc gcgcaagcgc tggctagtag atggccttga
     2761 ccacggacag gaccgagatg cgcgcagtgg cccaggcgat cagcgacgtg gccatcggaa
     2821 ccgccagaag ccaggggatc tcgatccatt tcagcgacag cggcggcagg aatggcaccg
     2881 cttcgacgcc gaatatctcc agcccgcccg cgcccaggaa aaacagggcc gcgaacagtg
     2941 ttcccaaagc cgcggcaaat agggccgata ggaagtagtg ccattccacg gcgcgggcga
     3001 tgaagccggg cagcgctccc atctggtgca gcagcgccac catctcgtga tgcgcatcaa
     3061 gcccggcccg ggtggcgaag gacaccgccg ccgccgtggc gcccgcgatc agcagcaaga
     3121 tgccataggc ggaaaaccgc accgcatccg ccaggccccg cagccgcatg atccagcggc
     3181 ggtgatcgtc catactggca tggggcgcgg cctgtttcag tttcgccgcc aaggcattca
     3241 catccagctc ctcgccgggc gtgatggtgg cgtcgatcag gcggggcagg ggaatgcccg
     3301 acaccgcgcc attcttgccg atccagggtt cgaccagggc attgatctct gcgtccgaca
     3361 acaaggcggc atgggcgatt cccgggctgg tattcaacac cgccagcgcg gcattggttt
     3421 ccgcatccag tgcgctgcgc acatcaccct gttccggcgg catcacctgc actgtgatac
     3481 ggtccgacag gccgctctgc cagccatgcg cggcgcgcgt cgccaccagc gaggcgccca
     3541 gcgccagcgc cgccagaaac gccatcaccg cgatcacgaa gtccagcggc gcggcgccct
     3601 tgtcgcgcgg caggatatag gttgcgcgat cactcatgcg gttgctctca attccaccag
     3661 ccgacctt
//
LOCUS       DATMDK010000168         2252 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1222672,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000168 DATMDK010000000
VERSION     DATMDK010000168.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2252)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2252)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2252
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1222672"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..492
                     /locus_tag="VNN98_03260"
     CDS             <1..492
                     /locus_tag="VNN98_03260"
                     /EC_number="3.4.23.-"
                     /inference="COORDINATES: protein motif:HMM:NF025034.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004190 - aspartic-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="retropepsin-like aspartic protease"
                     /protein_id="HWM61140.1"
                     /translation="RLNFISSDHCPGKVVYWQAQTLAEIPLRIVNGHYLIDITLDGKR
                     LVAMIDTGSPHSSIGLAEAQRYFGLSPASPDMVTAAKANGSVTTYTRKFGVLSFEGIE
                     IHDPTVAVLQTDFLDRERAAAGAHVIGQVSQPWDMTLGMDVLRHLHVYIATKERKLYI
                     TPA"
     gene            complement(532..606)
                     /locus_tag="VNN98_03265"
     tRNA            complement(532..606)
                     /locus_tag="VNN98_03265"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(572..574),aa:Gly,seq:gcc)
     gene            722..1582
                     /locus_tag="VNN98_03270"
     CDS             722..1582
                     /locus_tag="VNN98_03270"
                     /EC_number="7.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012738.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HWM61141.1"
                     /translation="MADNGRNSGEGYALLAPALAVMGLALAAPLLLMAVTSLKDQSGI
                     GFAQGWTLAQYVSVLGRASYRLLFLRSVLISAAVTLVTVTLAYPMAYFVAFHARHKFI
                     WLVALTIPFWTSYLLRVFAWKIILGYGGVINSGLMRLHLIDQPLGFLLYNPFAVVVTL
                     AHAWAAFAILPIYVSLEKIDRSLLEAAGDLGDGALRRFARITLPLSLPGVIGAAILIF
                     VPTTGDFVTPELVGGTQGTMIANIIEAQFNGVGNWPLGAALSLVSMAMVAVIAGLFVA
                     AARAAGKAAR"
     gene            1633..>2252
                     /locus_tag="VNN98_03275"
     CDS             1633..>2252
                     /locus_tag="VNN98_03275"
                     /EC_number="7.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012738.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HWM61142.1"
                     /translation="MFYAFAYLAFLYVPVLVLPVFSFNNSEFIAFPLSGFTTRWYAGL
                     AADTAMQHALGNSLKVGSVTALLSTLLGLTAAKAVTRYRLRGAGTALGFISLPLFIPD
                     IVLGLSLLLLLGAAGLPLSLAAVVLGHLLVCVPFALTVLIARFEGFDQSLEEASADLG
                     EDGWMTFWRVTFPLMLPGIIASLLLTFITSFDEFLVAYFLSGTEAT"
BASE COUNT          358 a          725 c          676 g          493 t
ORIGIN      
        1 aggctgaact tcatctccag cgatcattgc cccggcaaag tggtctactg gcaggcacag
       61 acgctggcgg agataccact ccgaatcgtc aatgggcatt atttgatcga catcacgctc
      121 gacggaaagc ggctggtcgc aatgatcgac accggctctc cacattcctc cattggtctt
      181 gcggaagcgc agcgctattt cggtctgtcg ccggcttcgc ccgacatggt gacggccgcc
      241 aaagcaaatg ggtccgtcac cacctatacg cgcaagttcg gtgtgctgtc cttcgaaggc
      301 attgaaatcc acgatcccac tgtcgccgtc ctgcaaaccg actttttgga ccgggagcgc
      361 gccgcggctg gggcacacgt gatcgggcag gtctcccagc cttgggacat gaccctgggc
      421 atggacgtgc tgcgtcatct gcacgtctat atcgccacca aggagcgcaa gctctacatc
      481 accccggcct gatcggccgg gggcgtaaga tcccgggact attgagaaaa ttggagcggg
      541 cgaacggatt cgaaccgtcg accctaacct tggcaaggtt atgctctacc cctgagctac
      601 gcccgcactc caagacggcg ggttatggcc caccctccac cgggattcaa gcagcaattc
      661 cttaggtttc ggttgcgccg gggctcgcga tttcccaaca atcgccgaca aaggggacag
      721 cgtggcggat aacgggcgaa actcaggcga aggctacgcc ctgcttgccc ccgctttggc
      781 ggtgatgggg ctggcgctgg ccgcgccgtt gctgctgatg gcggtcacca gcctgaaaga
      841 ccagagcggg atcggcttcg cccagggctg gactttggcc cagtatgtgt cggtgctggg
      901 gcgggccagc taccgccttc tgttcttgcg ttcggtgctg atctccgccg ccgtcacttt
      961 ggtgacggtg acgctggctt accccatggc ctatttcgtc gccttccatg cccggcataa
     1021 attcatctgg ctggtggcgc tgaccattcc cttctggacc tcctacctgc tgcgggtctt
     1081 cgcctggaag atcatcctgg gctatggcgg cgtgatcaat tcgggattga tgcggctgca
     1141 tctgatcgat cagccgctgg gctttctgct ctacaatccc ttcgccgtgg tggtgacttt
     1201 ggcgcacgcc tgggccgcct tcgccatcct gccgatttat gtcagcctgg aaaagatcga
     1261 ccgctctttg ctggaagccg caggcgatct gggcgacggc gccctgcgcc gcttcgcgcg
     1321 catcaccctg ccgctctccc tgcccggcgt gatcggcgcc gccatcctga tcttcgtgcc
     1381 caccaccggc gatttcgtca caccggagtt ggtgggcggc acccaaggca ccatgatcgc
     1441 caatatcatc gaggcgcagt tcaacggtgt cggcaactgg ccgctgggcg ccgccctgtc
     1501 attggtcagc atggcgatgg tagcggtgat cgcaggcttg ttcgtggcgg cggcccgcgc
     1561 ggccggcaag gcagcgcgat gaagaaccca ccctcaagta gcaaagcgat agggcataaa
     1621 agaagcggtc ttttgttcta tgccttcgcc tatctggcct ttttgtatgt gccggtgctg
     1681 gtgctgccgg tcttctcctt caacaattcc gaattcatcg cctttccctt gagcggtttc
     1741 accacccgct ggtatgccgg cctggccgcc gacaccgcca tgcagcatgc cctgggcaac
     1801 agcctgaagg tcggcagcgt caccgctttg ctgtccaccc tgttggggct gaccgccgcc
     1861 aaggcggtaa cgcgctaccg gctgcgcggc gcggggacgg cgctgggctt tatttccctg
     1921 ccgctattca ttcccgacat cgtgctgggc ctttcgcttc ttctgctgct gggcgcggcg
     1981 ggcctgccgc tgtcgctggc ggcggtggtg ctgggccacc tgctggtctg tgtgcccttc
     2041 gccctgaccg tgctgatcgc ccgcttcgaa ggcttcgatc aaagcttgga ggaagccagc
     2101 gccgatctgg gcgaggatgg ctggatgacc ttctggcgcg tcactttccc gctgatgctg
     2161 cccggcatca tcgccagcct gctgctcacc ttcatcacct cgttcgacga atttctggtg
     2221 gcctatttcc tgtcgggcac ggaagcgacc tt
//
LOCUS       DATMDK010000169         3370 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1455103,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000169 DATMDK010000000
VERSION     DATMDK010000169.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3370)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3370)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3370
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1455103"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..404
                     /locus_tag="VNN98_03280"
     CDS             <1..404
                     /locus_tag="VNN98_03280"
                     /inference="COORDINATES: protein motif:HMM:NF016236.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="MlaA family lipoprotein"
                     /protein_id="HWM61143.1"
                     /translation="AVQLPLFGSSNVRDSFGIVVGLVANPINFIPAGAATTIGTVSGG
                     FGVVDGRAGQLRASDALEHATLDYYATLRSVAAQHRARVVEEGRAGLVTDHPGEATQS
                     PRSSQPSLPLAQSEAPQENVQGTAAGDLPNF"
     gene            complement(663..747)
                     /locus_tag="VNN98_03285"
     tRNA            complement(663..747)
                     /locus_tag="VNN98_03285"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(711..713),aa:Leu,seq:caa)
     gene            825..1823
                     /gene="bioB"
                     /locus_tag="VNN98_03290"
     CDS             825..1823
                     /gene="bioB"
                     /locus_tag="VNN98_03290"
                     /EC_number="2.8.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005103519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004076 - biotin synthase activity
                     [Evidence IEA];
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0009102 - biotin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="biotin synthase BioB"
                     /protein_id="HWM61144.1"
                     /translation="MNAPARALHDTPRSDWRREDIAALFALPFPELMFRAASVHRAHF
                     DPAQVQVSTLLNIKTGGCPEDCGYCSQSSKYDTGVKASKLMEVEAALAEARAAKAAGA
                     SRFCMGAAWRGPKDKDLDAVCQMVEGVKALGMETCVTLGMLTAPQAVRLKQAGLDYYN
                     HNLDTSPEYYRHIISTRTFQDRLDTLGHVRGAGIAVCCGGIVGMGESAADRIGLIHAL
                     ATLPVHPQSVPINALVQIEGTPQGLATPLDPLEFVRIIAVARITMPKSMVRLSAGRED
                     MSDETQALCFLAGANSIFYGPKLLTTPNPVADSDRALFARLGLVPMPLGPENRSDV"
     gene            1816..2016
                     /locus_tag="VNN98_03295"
     CDS             1816..2016
                     /locus_tag="VNN98_03295"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61145.1"
                     /translation="MSRIVIQLLILVLGAVILAPIIMALELDPMPGDFVLALGTQHYP
                     IPVLWSLCASGALALLYSFYRR"
     gene            2048..>3370
                     /gene="purH"
                     /locus_tag="VNN98_03300"
     CDS             2048..>3370
                     /gene="purH"
                     /locus_tag="VNN98_03300"
                     /EC_number="2.1.2.3"
                     /EC_number="3.5.4.10"
                     /inference="COORDINATES: protein motif:HMM:NF002049.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0003937 - IMP cyclohydrolase activity
                     [Evidence IEA];
                     GO_function: GO:0004643 -
                     phosphoribosylaminoimidazolecarboxamide formyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006164 - purine nucleotide biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     phosphoribosylaminoimidazolecarboxamide
                     formyltransferase/IMP cyclohydrolase"
                     /protein_id="HWM61146.1"
                     /translation="MTIRKIARVLLSVSDKTGLLEFAKDLADQGVMLISTGGTAKALR
                     EAGLKVSDVSEITDFPEMMDGRVKTLHPNVHGGLLALRDKPDHAASMTEHGIAGIDLL
                     VCNLYPFEATVARGADFDTTIENIDIGGPAMTRSAAKNHDWVTVVVDVEDYKAVLDEM
                     AANGGGTTASLRRKLAQRAFARTAAYDAAVSGWFAGELAKDGDKEPPRRRAFGGLLRQ
                     GLRYGENPHQQAAFYADGSARPGVASAKQLQGKELSYNNINDTDAAYELVAEFDPAAA
                     PACAIIKHANPCGVALGKTLKDAYLAALACDTQSAFGGVLAFNRTLDSATAEEISKIF
                     TEVIIAPDADEDARKILASKKNLRLLTAGGLPDPLSPTLTYRSVAGGFLVQTRDNGRI
                     TRTELKVVTKRQPTEQEITDMLLAFTIGKHVKSNAIVYVKDGSTAGIGA"
BASE COUNT          643 a         1089 c         1036 g          602 t
ORIGIN      
        1 ctgccgtcca attgccattg tttggatcat cgaatgtacg agacagtttc ggcatcgttg
       61 tcggcctggt cgccaatcca atcaatttta ttccagcagg cgcagcgaca acgataggaa
      121 ctgttagtgg cgggttcggc gttgtcgatg gaagagccgg tcagctcaga gcgtcggacg
      181 ctcttgagca cgccacgctc gactattatg cgacgcttcg aagtgtggcg gcacaacatc
      241 gcgccagggt ggtcgaagaa ggtagagccg gcctcgtcac ggatcaccct ggagaagcga
      301 cacagtcccc aaggtcttct cagccgtccc tgcccctggc gcagagcgag gcgccgcagg
      361 agaacgtgca ggggacggcc gccggagacc tgccgaactt ttgatcacac caaactgggt
      421 cagagtggaa atagtactcg ccactccatc gccttacgcc ctcaagccgc ggccataatg
      481 caattgcgag cggccccgcc ggctgagcgc agcgaagacg gcaataaaat aaacccggcc
      541 gaacgtagca atattcaaga tgcgcaggcg cctagcatgc acgagatgcg ccggggtctt
      601 gctgccgcgc gcctggacgg cgcttggcat tcaaattcgc gcccgatggg cgcgaatttg
      661 aatggtgcgg gcggtcggaa tcgaaccgac acaccttgcg gtaccagatt ttgagtctgg
      721 cgcgtctacc agttccacca cgcccgcaca ggctgcgttt gttagcgttt cgggcccctt
      781 ccgtccaccc ttttacgggg cggggaaccg gttagaatgg cgccatgaac gctcccgccc
      841 gtgccctgca tgataccccc cgttccgact ggcgccgcga ggatatcgct gcccttttcg
      901 ccctgccctt tcccgaactg atgttccgcg ccgccagcgt ccaccgggcc catttcgatc
      961 ccgcccaggt gcaggtttcc accctgctca acatcaagac cggcggttgc ccggaggatt
     1021 gcggctattg cagccagtcg tcgaaatacg acaccggcgt caaagcttcc aagctgatgg
     1081 aggtggaagc cgccctggcc gaggcccgcg ccgccaaagc ggccggcgcc tcgcgtttct
     1141 gcatgggcgc cgcctggcgg ggtcccaagg acaaggacct ggatgcggtc tgccagatgg
     1201 tcgagggcgt caaagcgctg gggatggaga cctgcgtcac tctgggaatg ctgaccgcgc
     1261 cccaggcggt gcggctgaaa caggcgggac tggattacta caaccacaat ctcgacacct
     1321 cgccggaata ttaccgccac atcatcagca cccgcacctt tcaggaccgg ctggacacgc
     1381 tggggcatgt gcggggtgcc ggcatcgccg tgtgctgcgg cggcattgtc ggcatgggcg
     1441 aaagcgcggc tgatcgcatc gggctgatcc atgccctggc caccctgcct gttcatccgc
     1501 aaagcgtgcc gatcaacgcc ctggtgcaga tcgagggcac gccgcagggc ctggccacgc
     1561 cactcgaccc actcgaattt gtccgcatca tcgcggtggc gcgcatcacc atgcccaaat
     1621 ccatggtgcg gctgtccgcc gggcgcgagg atatgagcga cgagacccag gcgctgtgct
     1681 tcctggccgg ggccaattcc atcttctatg gccccaagct gctgactacc cccaatccgg
     1741 tggccgattc ggaccgggcg ctgttcgcca ggctgggcct cgttcccatg ccgctgggtc
     1801 cggagaaccg ctccgatgtc taggatcgtc attcagctgc tgattctggt gctgggggcc
     1861 gtcattctcg cgcccatcat catggcgctg gaactcgatc ccatgccggg ggatttcgtc
     1921 ctggctctgg gcacccagca ctatcccatt cccgtgctgt ggtcgctgtg cgcaagtggg
     1981 gccctcgccc ttttatattc gttttacagg cgctaagagc ggcggacacc cgcagctgag
     2041 ccaaccaatg accattcgca agattgcccg cgtcctgctg tcggtttcgg acaagaccgg
     2101 tctgctggaa tttgccaaag acctggcgga ccagggcgtg atgctgattt ccaccggcgg
     2161 caccgccaag gcgttgcgcg aagcgggcct gaaagtcagc gacgtgtcgg agatcaccga
     2221 ttttcccgag atgatggacg ggcgggtcaa gaccctgcat cccaacgtgc atggcggtct
     2281 cttggcgctg cgcgacaagc cggaccatgc cgcttcgatg acggaacacg gcatcgccgg
     2341 catcgatctc ttggtctgca atctctatcc gtttgaagcc acggtggcgc gcggcgccga
     2401 tttcgacaca acaatagaga atatcgacat cggcggtccg gccatgaccc gttcggcggc
     2461 caagaaccat gactgggtga cggtggtggt ggatgtcgag gattacaaag ccgtgctgga
     2521 cgagatggcg gccaacggcg gcggcaccac tgcgagcctg cgccgtaagc tagcacagcg
     2581 tgccttcgcc cgcaccgcgg cctatgacgc agcggtgtca ggctggttcg cgggcgaact
     2641 ggccaaggac ggcgacaagg aaccgccgcg ccgccgcgcc tttggcgggt tgctgcgcca
     2701 gggcctgcgc tatggcgaaa atccgcacca gcaagccgct ttctatgccg acggcagcgc
     2761 ccgtcccggc gtggccagcg ccaaacagct tcagggcaag gaactcagct acaacaatat
     2821 caacgacacc gacgcggcct atgagctggt ggcggaattc gatcctgcgg ccgcgcccgc
     2881 ctgcgccatc atcaagcatg ccaatccttg cggcgtggcg ctgggcaaga cgctgaaaga
     2941 cgcctatctg gcggcgctgg cctgcgacac ccaaagcgcc tttggcggcg tgctggcctt
     3001 caaccggaca ttggacagcg ccacggccga ggaaatctcc aagatcttca ccgaagtgat
     3061 cattgcgccg gacgccgacg aagacgcgcg caaaatcctg gcatcaaaaa agaatctgcg
     3121 cctgctgacg gcgggcggcc tgcccgatcc gttgtcgccc accttgacct atcgctcggt
     3181 agcgggcggc tttctggtgc agacccgcga caatggcagg atcacgcgca ccgaattgaa
     3241 agtggtgacc aagcgccagc cgaccgagca ggaaatcacc gacatgctgc tggccttcac
     3301 catcggcaaa cacgtcaaat ccaacgctat cgtctatgtg aaggacgggt ccaccgccgg
     3361 catcggcgcg
//
LOCUS       DATMDK010000170         3016 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1913680,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000170 DATMDK010000000
VERSION     DATMDK010000170.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3016)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3016)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3016
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1913680"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..398)
                     /locus_tag="VNN98_03305"
     CDS             complement(<1..398)
                     /locus_tag="VNN98_03305"
                     /inference="COORDINATES: protein motif:HMM:NF018095.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SH3 domain-containing protein"
                     /protein_id="HWM61147.1"
                     /translation="MFRFAAILAILSALFSIFFSVWGVQAQPILRYVSQRSDKAYLRE
                     GPTYAHKVLWVYRHRGYPFAVIAQFDTWRRVRAADGTLGWMSAVMLSDQRTVLVTGQG
                     RVKITAGADGGKVVALADPGAVAGLRACTH"
     gene            491..1477
                     /locus_tag="VNN98_03310"
     CDS             491..1477
                     /locus_tag="VNN98_03310"
                     /EC_number="1.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012607.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008465 - glycerate dehydrogenase activity
                     [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-glycerate dehydrogenase"
                     /protein_id="HWM61148.1"
                     /translation="MSVRKPLVIITRKLPEAVETRMRELFDARLNHDDKPMSQAALAE
                     AMATAEVLVPTITDRIDAALIAKAGTKLKLIANFGAGVDNIDVKAATDKGIAVTNTPG
                     VLTEDTADMTMALILAVPRRLVEGVAAMEEEKFKGWAPNWMLGHRLQGKRLGIVGMGR
                     IGQAVARRARAFGLQIHYHNRKQLAAAIEQELEATYWESLDQMLARMDIVSVNCPHTP
                     ATFHLLSARRLKLMKPSAYIVNTARGEVIDENTLALMLEKGQLSGAGLDVFENEPAVN
                     PKLLKARNVVLLPHMGSATIEGRIDMGEKVIVNIKTFVDGHQPPDRVIPAML"
     gene            1557..>3016
                     /locus_tag="VNN98_03315"
     CDS             1557..>3016
                     /locus_tag="VNN98_03315"
                     /inference="COORDINATES: protein motif:HMM:NF014442.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0008170 - N-methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006306 - DNA methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-6 DNA methylase"
                     /protein_id="HWM61149.1"
                     /translation="MSDKAVKTAVSKFGAAAKAKLASIAISGAPEDQLRAPLETLLHE
                     LSEIGGFTPGAIQLVGETTLAHLKTRPDYAVTVGNALVGFIEVKAPGKGADPRQFAKN
                     THDADQWDKLKSLPNLIYTDGNSFSLWRDGKLEDKIVPLDGNVETSGAHLAAPAGLLP
                     LVVSFLQWNPIPPKTAKGLAEVSARLCRLLRDEVVEQMGQGNPGLTGLAADWRKLLFP
                     EADDAQFADGYAQAVTFGLLVARARGIELSSGIETAAQELRKTNSLIGAALRILTDDA
                     ANQDALKTSLGTLTRVLDAVHWPTITKDKPDAWLYFYEDFLEVYDNTLRKRTGSYYTP
                     PEVVAAMVSLVDEALRGPLFERPAGFASVDVTVADPAVGTGTFLLGVLRRIATTVMED
                     QGTGAVHGAIEAAAKRLMGFELQFGPYAVAQLRLMAEMQTLIAEKDKPLPPVPDLHLY
                     ITDTLGNPFIEDETLGHVYEPIAKSRRDANLVKKSQP"
BASE COUNT          619 a          912 c          959 g          526 t
ORIGIN      
        1 tcgtgggtgc aggccctcag tcccgcgacg gcaccgggat cggccagcgc caccaccttg
       61 ccgccatcgg cacccgcagt gatcttgacc cggccctggc cggtgaccag gacggtgcgc
      121 tggtcgctga gcatgacggc gctcatccag cccaaggtgc cgtccgccgc ccggacccgc
      181 cgccaagtgt cgaactgggc gatgaccgcg aagggatagc cgcgatggcg atagacccac
      241 agcactttgt gggcataggt ggggccttcg cgcagataag ccttgtcgct gcgctggctg
      301 acatagcgca ggatcggctg ggcctggacc ccccagactg aaaagaagat cgaaaagagg
      361 gcagataaga tcgctaaaat tgcggcaaac cggaacatgg ccaacttgtt ttgatgacct
      421 gtcacattta gcagggcaga ccgcttccgt catcagcgcg gctgggcttt aatggcccaa
      481 cgaggagcgc atgtccgtcc gaaaaccgct ggtcatcatc acccgcaagc tgcccgaagc
      541 ggtggagacg cggatgcgcg agctgtttga cgcgcggttg aaccatgacg acaagccgat
      601 gtcccaggcg gcgttggccg aagccatggc aacggccgag gtgctggtgc ccaccatcac
      661 cgaccgcatc gatgccgcgc tgatcgccaa ggccggcacc aagctcaagc tgatcgccaa
      721 tttcggcgcc ggggtggaca atatcgacgt caaggccgcc accgacaaag gcatcgccgt
      781 caccaacacc ccgggcgtgc tgaccgagga cactgccgac atgaccatgg cgctgattct
      841 ggcggtgccg cgccggctgg tggaaggcgt ggcggcaatg gaagaggaaa agttcaaggg
      901 ctgggctccc aactggatgc tgggtcaccg cttgcagggc aagcggctgg ggattgtcgg
      961 catggggcgc atcggccagg cggtggccag gcgcgcccgg gccttcggcc tgcagatcca
     1021 ttatcacaac cgcaagcagc tggccgccgc aatcgagcag gagttggagg cgacctattg
     1081 ggaaagcctg gatcagatgc tggcgcggat ggacatcgtc tcggtcaatt gcccgcacac
     1141 cccggcgacc tttcatcttc tgtcggcgcg gcggctgaag ctgatgaagc cgtcggccta
     1201 tatcgtcaac accgcgcgcg gtgaggtgat agacgagaac actttggcgc ttatgctgga
     1261 aaagggccag ctgtcgggcg ccggcctgga cgtgttcgag aatgagccgg cggtcaatcc
     1321 caagctgctg aaggcgcgca atgtggtgct gctgccgcat atgggctcgg ctaccatcga
     1381 ggggcgcatc gacatgggcg agaaggtgat cgtgaatatc aagaccttcg tcgatggcca
     1441 tcagccaccc gaccgcgtca ttccagcgat gctgtaacct gggctgtccg caagaccctt
     1501 tgtgaatttg ccgaagcggt ttagcttgcc cgaccatcag gctggctgag gcaaaaatgt
     1561 ccgataaagc ggtcaaaacc gctgtttcca agttcggggc agcagccaag gcaaagctgg
     1621 ccagtatcgc gatcagcggc gcaccggaag accagttgcg ggcgccactg gaaaccttgc
     1681 tgcatgaatt atccgagatt ggcggcttta ccccgggcgc cattcagctt gtcggggaaa
     1741 caacgctcgc gcatctcaag acccggcccg actatgcggt gacggtcggc aatgccctgg
     1801 tcgggttcat cgaggtcaag gctcccggaa agggcgccga cccgcgccaa ttcgccaaga
     1861 acacccatga tgcggaccag tgggacaagt taaaatcgct gcctaatctg atctacacgg
     1921 acggcaacag cttcagcctg tggcgggacg gcaagcttga ggacaaaatc gtcccgctcg
     1981 acggcaatgt tgaaacctcc ggcgcccacc tggccgcgcc cgcaggcctg ctgccgctgg
     2041 tcgtcagctt cctgcaatgg aatccgattc cacctaagac ggccaagggc ctggcggaag
     2101 tcagcgcgcg attgtgccgg cttctgcgtg atgaagtcgt cgaacagatg gggcaaggta
     2161 atcccggttt gacggggctg gccgccgact ggcgcaagct gctctttccc gaagccgatg
     2221 acgcgcaatt cgccgatggc tatgcgcagg cagtcacctt cggattgctg gtggcgcggg
     2281 cgcgcggaat tgagctgtcg tccggcatcg aaacggcggc gcaggagttg cgtaaaacca
     2341 actctctgat cggcgccgca ttgagaattc tcaccgacga cgcggcaaat caggacgccc
     2401 tgaaaacctc gctgggcacc ctgacccggg ttctcgacgc ggtccattgg cccaccatca
     2461 ccaaggacaa gccggacgct tggctgtatt tttacgaaga cttcctggaa gtctatgaca
     2521 acacgctgcg caagcggacg ggttcctact acacgccgcc cgaagtcgtg gccgcgatgg
     2581 tcagtcttgt ggatgaagcc ctgaggggtc cgctgttcga gcgcccggcc ggcttcgcct
     2641 cggtcgacgt gacggtcgcc gatccggcgg tcggaaccgg cacttttctg ctgggcgtgt
     2701 tgcgccgcat cgcgactacc gtaatggagg accagggcac tggcgcagtg catggcgcaa
     2761 ttgaagccgc tgcaaaaaga ctcatgggtt tcgagcttca gttcggacct tatgcggtgg
     2821 cgcaattgcg gttgatggcc gaaatgcaaa cgctgatagc ggaaaaggac aaaccactgc
     2881 cgccggtgcc ggacttgcat ctctacatca ccgatacgct gggcaatcct tttatcgagg
     2941 acgagacgct cggccacgtc tatgaaccga ttgccaagtc gcggcgcgat gcgaacctgg
     3001 tcaagaaaag ccagcc
//
LOCUS       DATMDK010000171         2009 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_771496,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000171 DATMDK010000000
VERSION     DATMDK010000171.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2009)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2009)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2009
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_771496"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..689)
                     /locus_tag="VNN98_03320"
     CDS             complement(<1..689)
                     /locus_tag="VNN98_03320"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61150.1"
                     /translation="MIGIFITTAASGAEKWGYELPSFGKDTRIVALYRSATGDIVAEL
                     SYGVGKTRYADFYDTGLKKRLAPDNALQIAQVYGVEKKIAADNHLTPIKWQMAVTNSA
                     GTVFGTEDLSGPKCRWPYDVALTTMGAGPQDFQRDYLILKKLPKVERQSYGCNYLDSP
                     GHPMLRTRYREQSPNLYWSSGPDVYFALRDAPYLVRFDAKGNTHFFDHRTDFVMVRAE
                     KIGALVEKMET"
     gene            complement(740..1369)
                     /gene="pdxH"
                     /locus_tag="VNN98_03325"
     CDS             complement(740..1369)
                     /gene="pdxH"
                     /locus_tag="VNN98_03325"
                     /EC_number="1.4.3.5"
                     /inference="COORDINATES: protein motif:HMM:NF004231.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004733 - pyridoxamine phosphate oxidase
                     activity [Evidence IEA];
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_process: GO:0008615 - pyridoxine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase"
                     /protein_id="HWM61151.1"
                     /translation="MTMETGGPLDDGGIAALPDPFALFQSWMQEAEKAEPSDANAMAL
                     ATAGADGTPNVRMVLLKGADAGGFVFYSNADSIKGGEMAANPHAAINFHWKSLRKAVR
                     AQGTIVQVSDAEADAYFATRPKDSQIGAWASPQSRAMEGRFVFEKAIAEYAVKYALTK
                     VPRPPYWTGWRITPLRIEFWRDRPFRLHDRLVYRRDGAAAPWRTERLFP"
     gene            1441..>2009
                     /locus_tag="VNN98_03330"
     CDS             1441..>2009
                     /locus_tag="VNN98_03330"
                     /inference="COORDINATES: protein motif:HMM:NF019843.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HWM61152.1"
                     /translation="MHKIFPLLTALALCACFAGATGAEARSAAEIAAVFDAGVAAYDA
                     GDYQKAFKTWWDLRYEDLAAMRNLGMMLRKGQGTEKDPAKAEEIYLRAAEAGLPTAQA
                     DLADMYLKGEVGPPSLERALPLLQAAAAANHPVAQYQLGELYETGAPPLVPQNLDTAR
                     QLYAAAAGHGMKEAAARAAFLGPPTAQPF"
BASE COUNT          385 a          619 c          616 g          389 t
ORIGIN      
        1 tgcgtttcca ttttttctac aagcgccccg atcttttcgg cgcgtaccat cacaaagtcc
       61 gtgcggtgat cgaagaaatg cgtgtttccc ttagcatcaa agcggaccag atagggcgcg
      121 tcacgaaggg caaagtaaac atccggcccc gatgaccagt aaagatttgg gctctgctcc
      181 cggtaacgcg ttctgagcat ggggtgtccc gggctgtcca gataattgca gccataggac
      241 tgccgctcga ccttcggcag cttcttgaga ataagataat cgcgttgaaa gtcctgtggg
      301 ccggcgccca tcgtcgtgag cgccacatca taaggccatc ggcatttggg tcccgagaga
      361 tcctcagttc caaaaacggt cccagcagaa ttggtgaccg ccatttgcca cttgatgggc
      421 gtcagatgat tgtctgcggc gatctttttt tctacaccgt acacctgcgc gatctgcagt
      481 gcgttgtcgg gcgccaagcg ttttttaagg cccgtatcgt agaaatcggc atagcgtgtc
      541 ttgcccacgc cataactgag ctccgccacg atgtcgccgg tagcggacct gtagagcgca
      601 acgatgcgcg tatcttttcc gaagctggga agctcatatc cccacttctc ggccccggat
      661 gcggcggtag tgatgaaaat gccgatcacg gcgccagcga aaagcttgcc aaggcagtgg
      721 gcgcggctac aggggtgcat cacggaaaca gccgttcggt acgccagggc gctgcggcgc
      781 cgtcgcggcg atagaccagc cggtcatgaa gacgaaaagg cctgtcgcgc cagaattcga
      841 tgcgtagcgg ggtgatgcgc cagccggtcc aatagggtgg gcgcggcacc ttggtcaggg
      901 catatttcac ggcatattcg gcaatggcct tttcgaacac gaagcgccct tccatcgcgc
      961 gcgactgggg cgaggcccag gcgccgatct ggctgtcctt gggacgggtg gcgaaatagg
     1021 catcggcttc cgcgtccgaa acctggacga tggtgccttg cgcccgcacc gccttgcgca
     1081 agctcttcca gtgaaagttg atggcggcat ggggattggc cgccatctcg ccgcccttga
     1141 tgctgtccgc attggaataa aacacaaagc cgccggcatc ggcgcccttg agcaatacca
     1201 tacggacatt gggggtaccg tcagcccccg ccgtggccag cgccatggca ttggcatcgc
     1261 tgggctcggc cttttcggct tcctgcatcc agctttggaa cagcgcaaaa ggatcgggca
     1321 gggcggcaat cccgccatcg tccaaaggcc cgcctgtctc catcgtcatg cggccgtcct
     1381 agcagtttcg ctttcgcctg aacaatgagt cagtgtagcc ttggctcggc gatgccccaa
     1441 atgcacaaga tttttccgct tcttaccgcc ttggcgcttt gcgcctgctt cgcaggggca
     1501 acgggggctg aggcccgcag cgccgcggaa atcgcagcgg tcttcgatgc cggcgtcgcc
     1561 gcctatgacg cgggcgatta ccaaaaggcc ttcaagacct ggtgggatct tcgctatgaa
     1621 gatctcgccg ccatgcgcaa tctgggcatg atgctgcgca agggacaggg taccgaaaag
     1681 gacccggcaa aggcggaaga gatttacctg cgggcggcgg aagccggcct gcccaccgcc
     1741 caggccgatt tggccgacat gtatctgaag ggcgaggtgg gcccacccag cctggagcgc
     1801 gccttgccgc tgctgcaagc cgccgccgcc gccaaccatc ccgttgcgca atatcagctg
     1861 ggtgagctgt acgagaccgg cgccccgccg ctggtgccgc agaatctgga taccgcccgc
     1921 cagctttatg ccgctgccgc agggcacggc atgaaggagg ccgcggcgcg cgcggccttt
     1981 ctgggcccgc caacggcaca gccgttcca
//
LOCUS       DATMDK010000172         2295 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1457898,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000172 DATMDK010000000
VERSION     DATMDK010000172.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2295)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2295)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2295
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1457898"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            169..1968
                     /locus_tag="VNN98_03335"
     CDS             169..1968
                     /locus_tag="VNN98_03335"
                     /inference="COORDINATES: protein motif:HMM:NF017745.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF885 family protein"
                     /protein_id="HWM61153.1"
                     /translation="MLDRRTLLASTAAVLTSPAWGAPPKNAAGLSPLFDQFMKENLDN
                     SPLTVSQLGLDTGTRANQKSLIDDSSLAGIAKNKAITASQLSRLKAFDRASLSPKDVV
                     SYDVILYGLKTNAEANARFAYGPGGAGAPYILSQLTGSYSQGPSFLDNQHTIETKADA
                     EAYLARLNGFATLLDQETEVTRHDIALGVVPPDFALAKTLLQMNQLRAPAPEKSSLTE
                     SVVRRTKEKNIPGDWSGRAAKIVKDKFYPALERQIALVKEMQKHAVHDAGVWRLPDGE
                     AYYRASLQNWATTDKSPQEIHKLGLQVVADTTAQLEVLMKAQGMTKGTVGERLRAMFS
                     DPRFIAPNNDGEKDKIIADLNAKVKQVRAKLPAYFGTLPKADVVIKRVPKNIEAAQPM
                     GYYNNASLDGKRPGIYWINLRNTAEVPNWTLPSVTYHESIPGHHLQLSMQQEAGLPLI
                     RKVAFFSAYIEGWALYAEQLAVEMGMYEHDPLGHIGQLHDAMWRGIRLVVDSGMHGLH
                     WSREKAVRYFGDAAGDPEASIVTEVERYCVWPGQACSYMLGKLEFLKQRERAKQALAA
                     KFDIRKFHDAVLLDGAVPLALMPGLADRYIASS"
     gene            2042..>2295
                     /locus_tag="VNN98_03340"
     CDS             2042..>2295
                     /locus_tag="VNN98_03340"
                     /inference="COORDINATES: protein motif:HMM:NF024931.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium chelatase domain-containing protein"
                     /protein_id="HWM61154.1"
                     /translation="MTVAHVYTVAFQGIEAREVDVQVHVGEGGNGLFNVVGLADKAVA
                     ESRERVRAALAAIGLALPFKRITVNLAPADLPKEGSHYDLP"
BASE COUNT          465 a          749 c          701 g          380 t
ORIGIN      
        1 ttcgcgcatc ttacactggc aagcccggcg ggaaaatccc cggcagacac gcatgagcgg
       61 gcggcggacc cctctcgatc aaccgcaggc ccttctcgac aaactgcaca attcgccatt
      121 gccgccggca aaaagcggcc atacggttcc gggcgaggag acccacccat gctcgaccgc
      181 cgcacactgc ttgcttccac cgccgccgtt ctgacgagcc ccgcctgggg cgcaccgccc
      241 aaaaacgcgg cagggctcag cccgctgttc gaccagttta tgaaggagaa tctggacaat
      301 tctcccctca ccgtcagcca gttggggctc gataccggga cgcgcgccaa tcagaaaagc
      361 ctgattgacg attcgtcact ggccggcatc gccaagaaca aagccatcac cgccagccag
      421 ctgtcccggc tcaaagcgtt cgaccgcgcc tcgctcagcc ccaaggatgt ggtcagctat
      481 gacgtgatcc tgtatgggct gaagaccaat gccgaggcca atgcgcgttt cgcctacggt
      541 cccggcggcg cgggcgcgcc ctatatcctc agccaactga ccggcagcta tagccaaggc
      601 ccgtccttcc tcgacaacca gcacaccatc gagaccaagg ccgatgccga ggcttatctg
      661 gcgcggctga atgggttcgc gacgctgctg gatcaggaga ccgaagtcac gcgccatgac
      721 atcgcgctgg gcgtggtgcc gccggacttc gcgctggcca agaccctgct gcagatgaat
      781 caattgcggg cgcccgcgcc ggaaaaatcc tccctgacgg aatcggtggt gcggcgcacc
      841 aaggaaaaaa acattcccgg cgactggagc gggcgcgccg ccaaaatcgt caaggacaaa
      901 ttctatcccg cactggaacg ccagatcgcc ctggtcaagg agatgcagaa gcacgccgtg
      961 catgatgcag gcgtgtggcg cttgccggac ggcgaggcct attaccgcgc ttcgctgcag
     1021 aactgggcca ccaccgacaa gagcccgcag gaaatccaca agctgggcct gcaggtcgtt
     1081 gccgacacca cggcccagct tgaggtgctg atgaaggcgc aaggcatgac caaaggcacc
     1141 gtgggggagc ggctgcgcgc catgttcagc gatccgcgct tcatcgcgcc caataacgat
     1201 ggggaaaaag acaagatcat cgccgacctc aacgccaagg tgaagcaggt acgcgccaag
     1261 ttgccggcct atttcggcac cctgcccaag gccgatgtgg tcatcaagcg cgtgcccaag
     1321 aacatcgagg cggcccagcc gatgggctat tataacaatg cctcgctgga cggaaagcgc
     1381 ccgggcattt actggatcaa cctgcgcaac accgccgaag tgccgaactg gaccctgccc
     1441 agcgtcacct atcatgaaag cattcccggc catcacctgc agctctcgat gcagcaggaa
     1501 gcgggcctgc cgctgatccg caaggttgcg ttcttctctg cctatatcga aggctgggcg
     1561 ctttatgccg aacagctggc ggtggaaatg ggcatgtatg agcatgaccc gctgggccat
     1621 atcggccaat tgcacgatgc gatgtggcgc ggcatccgcc tggtggtgga tagcggcatg
     1681 catggcctgc attggagccg ggaaaaggcg gtgcgctatt tcggcgacgc cgccggcgat
     1741 ccggaagcct cgatcgtcac cgaagtcgaa cgctattgcg tctggcccgg ccaggcctgt
     1801 tcctacatgc tgggcaagct ggaattcctc aagcagcgcg agcgcgccaa gcaggcgctg
     1861 gcggcgaagt tcgatatccg caaattccac gacgccgtgc tgctggacgg cgccgtgccg
     1921 ctggccttga tgcccggatt ggccgaccgc tacatcgcct caagctgact ttttttgacg
     1981 ggatgtggct ttgacgggat gcggcggcgc ccgctaggtt ctcactctgt agtgagggcc
     2041 gatgactgtc gcgcacgtct ataccgtggc cttccagggc atcgaagccc gcgaagtcga
     2101 tgtgcaggtg catgtcggcg agggcggcaa tgggctgttc aacgttgtgg gcctggccga
     2161 caaggcggtg gccgaaagcc gcgagcgggt gcgcgccgcc ctggccgcca tcggcctggc
     2221 gctgcccttc aagcgcatca ccgtcaatct cgcccccgcc gacctgccca aggaaggcag
     2281 ccattacgac ctgcc
//
LOCUS       DATMDK010000173         2453 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2132713,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000173 DATMDK010000000
VERSION     DATMDK010000173.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2453)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2453)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2453
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2132713"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1532
                     /locus_tag="VNN98_03345"
     CDS             <1..1532
                     /locus_tag="VNN98_03345"
                     /inference="COORDINATES: protein motif:HMM:TIGR01686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="HAD-IIIC family phosphatase"
                     /protein_id="HWM61155.1"
                     /translation="RPDAVLLAIDYRGLPLRFAIGADEDAEIADAMAHLGAMRDGVRR
                     HCGAVCIVQTLAPPPESLFGSFDRIVPGTPRRIVEGVNRALADSIAGTPDLLLDVAAL
                     AETVGLDSWHSPAQWNLAKLAFADRCLPVYADHVARLLAAMRGRSRKCLILDLDNTLW
                     GGVIGDDGLEGIKLAQGDASGEAYLAVQQMALALRRRGIVLAVSSKNTDDIARRPFRE
                     HPEMLLKEEHFAVFQANWNDKATNITAIAEELSLGLDAMVFLDDNPVERGLVRRMLPQ
                     VAVPELPDDPALYARTLAAAGYFESIAFSDEDRQRAEMYQSNARRIALQKQAGDLDAY
                     LASLRMEIGFAPFDRLGRARISQLINKSNQFNLTTRRYSEADVAAAEEDPSVFTLQVR
                     LSDSFGDNGMISVVICRPAGPSSWEIDTWLMSCRVLGRQVETMVLREILSQARKHDIS
                     RLIGIYQPTERNDLVRDHYKKLGFSPVSEDHGATVWEIAADTDIPAAPMSVRHASLEP
                     A"
     gene            complement(1578..>2453)
                     /locus_tag="VNN98_03350"
     CDS             complement(1578..>2453)
                     /locus_tag="VNN98_03350"
                     /inference="COORDINATES: protein motif:HMM:NF016289.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HWM61156.1"
                     /translation="APHFNVGGARARGFSRPTGVNTDPGLQPDEKLRALDMPPAIPGK
                     REDVYCTKVGATHPGEMYIVAAHMDGIGFGEAANDNGSGTALVMELARIFSAPGVQTD
                     RSIRFVLWNNEETGLNGAAAYVAQRSPLQGVESPPGSGRYPEPKWLGMIQHDMMLFDH
                     GMPRADGSLSPVQRPEADVNIEFQMQSKFAEQSKALAFLLEDANEKYATDYPAAIGSH
                     MTNTDSHEFQDAVASVSLRENERGAQVGNGWDPQWHQPTDLYATYDDKDFRLGLNAAQ
                     TTLSAVARLAGATVK"
BASE COUNT          415 a          774 c          811 g          453 t
ORIGIN      
        1 cccgcccgga tgcggtgctt ctggcaatcg actatcgcgg attgccgctg cgctttgcca
       61 ttggcgcgga cgaagacgcg gaaatcgccg atgcgatggc gcatctgggc gcgatgcgcg
      121 atggcgttcg ccgccattgc ggcgcggttt gcatcgtgca gaccctggcg ccgccgcctg
      181 aatcgttgtt cggcagtttc gaccgcattg tgccgggaac tccgcggcgc attgtcgagg
      241 gcgtgaaccg cgccctcgcc gacagtatcg cgggcacgcc ggacttgctg ctggatgtcg
      301 ccgccctggc cgaaacggtg ggcttggaca gctggcattc tccggcacaa tggaacctgg
      361 ccaagctggc ttttgccgac cgctgcctgc ctgtttatgc cgatcatgtt gcgcgcttgc
      421 tggcggcgat gcgcggccgc agccgcaaat gcctgatcct ggacttggac aatacgctgt
      481 ggggcggcgt catcggcgat gacgggctgg aaggcatcaa gctggcgcag ggagacgcca
      541 gcggcgaagc ctatctggcg gtacagcaga tggcgctggc gctgcgccgg cgcggcatcg
      601 tgctggcggt ctcgtccaaa aacaccgacg acatcgcccg ccggcctttc cgcgagcatc
      661 ccgaaatgtt gctcaaggag gaacactttg ccgtgttcca ggccaactgg aacgacaagg
      721 ccaccaacat cacggcgatc gccgaggaat tgtcgcttgg cctggatgcc atggtgtttc
      781 tggacgacaa tccggtcgaa cgcggtctgg tgcgaaggat gctgccccag gttgccgttc
      841 ctgaactgcc cgacgacccg gctttgtatg ccaggacctt ggcggcggcg ggctattttg
      901 aaagcatcgc cttctcggac gaggaccgcc agcgggcgga aatgtaccaa tccaatgccc
      961 ggcgcatcgc gctgcaaaaa caggccggcg atctggacgc ctatctggcc tcgctgcgga
     1021 tggagatcgg ctttgcgccc ttcgaccgcc tggggcgggc gcgcatcagc cagctgatca
     1081 acaagtccaa ccagttcaac ctgacgacgc ggcgttacag cgaggccgac gtggcggcgg
     1141 cagaagaaga tccgtcggtt ttcaccctgc aggtccggct aagcgacagt ttcggcgaca
     1201 atggcatgat cagcgtggtg atttgccgcc ccgccggccc gtccagctgg gagattgata
     1261 cctggctgat gagctgccgc gtgctgggcc gccaggtgga gaccatggtg ctgcgcgaaa
     1321 tcctgtccca ggcccgcaag cacgacatct cccgcctgat cgggatttac cagccgacgg
     1381 agcgcaacga tctggtgcgc gatcattaca agaagctcgg cttcagcccg gtgtccgagg
     1441 accatggcgc cacggtgtgg gagatcgccg ccgacaccga cattccggct gcgcccatga
     1501 gcgtgcgcca cgccagcctg gaaccggcat agacatcaag ggcggcaggc gcgcggccac
     1561 atcttgctga tagaatttca cttcaccgtg gcgccggcca gccgcgcgac cgcggacaaa
     1621 gtggtctgcg ccgcattgag acccaggcga aaatccttgt cgtcataggt ggcgtacagg
     1681 tcggtcggct ggtgccattg cggatcccag ccattgccga cctgggcgcc gcgctcgttt
     1741 tcccgcaaac tgaccgacgc cactgcgtcc tggaattcat gggagtcggt gttggtcatg
     1801 tggctgccga tggcggcggg atagtcggtg gcgtacttct cgttggcgtc ttccaacaag
     1861 aaggccagtg cctttgactg ttcggcgaat ttcgactgca tctgaaattc gatgttcaca
     1921 tcggcttcgg gacgctgcac cggactcagg ctgccgtcgg cgcgcggcat gccgtggtcg
     1981 aacagcatca tatcgtgctg gatcatgccc agccatttgg gctccggata gcggcccgag
     2041 ccgggcgggg attccacgcc ctgcaggggg ctgcgctggg cgacataggc ggcggcgccg
     2101 ttgaggcccg tctcctcatt gttccacagc acgaagcgga tcgaacgatc ggtctgaacc
     2161 cctggtgcgc tgaagattcg cgccagctcc atcaccagcg cggtgcccga gccattgtcg
     2221 tttgcggcct cgccaaagcc gatgccgtcc atatgggcgg cgacgatata catctcgccc
     2281 ggatgggtgg cgccgacctt ggtgcaatag acatcctcgc gcttgcccgg gatcgccggc
     2341 ggcatgtcga gcgcgcgcag cttttcgtca ggctgcaggc ccggatcggt gttgacgccg
     2401 gtgggccggc tgaagccgcg ggcccgcgcc ccgccgacat tgaagtgcgg cgc
//
LOCUS       DATMDK010000174         4983 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_997515,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000174 DATMDK010000000
VERSION     DATMDK010000174.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 4983)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4983)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4983
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_997515"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..438)
                     /locus_tag="VNN98_03355"
     CDS             complement(<1..438)
                     /locus_tag="VNN98_03355"
                     /inference="COORDINATES: protein motif:HMM:NF019977.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglutaminase N-terminal domain-containing
                     protein"
                     /protein_id="HWM61157.1"
                     /translation="MEYFVRHRTTYRYLQDVSHSWHLAHLRPRSTPLQSVHDSAITLS
                     LEPASRVGREDYFQNPCEWFSIDQPHTHLEVLAESRVTVDAAPERISRDSLPWEEVRG
                     MLENPQSDEARDVVQYLFDSPLTKFHSDIAAYGSVSFPPRRPLL"
     gene            complement(438..2951)
                     /locus_tag="VNN98_03360"
     CDS             complement(438..2951)
                     /locus_tag="VNN98_03360"
                     /inference="COORDINATES: protein motif:HMM:NF025761.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="circularly permuted type 2 ATP-grasp protein"
                     /protein_id="HWM61158.1"
                     /translation="MSEVAEPVSPALSRFDELRGVDGQVRPHWRAFARTLTQLSPDEF
                     DRRQASARATVQDNGVTYNVYDDRGGKARPWQLDIVPFILSSTDWKVIEAAVIQRAML
                     ADLLLRDIYGPQRLIRESVLPAHLVTGHPQFLRPLCGISPARDVHVHLYSADLARGPD
                     GAWKVMASRVDAPGGLGYALENRLVVSQTFPENFGDMRVARLAAFFNAYRESILEMGA
                     SRRDRAVLLTPGPYNEAYFEHVYLAHYLGLTLVQGDDLAVRDGEVFLKTLTGLERVAA
                     IFRRVDSDFCDPLELRGDSALGVPGLVEAVRAGGVVLANALGGGVIESPAMDAYLPAV
                     SQALLGEELKIPDIATIWCGTEWGRKEALARMNQAILRDAFDARPLFSRRSSGKLGAE
                     MSAQERERAIAQLKQRGETMVLQEISPLGLAPVFEQGKFGAKPVSLRVFAAWTPSGWM
                     VMPGGLTRVAADDTMRALSMQSGASSKDAWVISNAPVDSFSLLANGGRMLEIKRHGES
                     APSRAMDNLFWLGRYAERTESFVRILRAVAARVSDEPAAALDVARKLLIPFSQASDTP
                     LEEIADDQALMEELQLLIYSPRNSRGLQRLLLRVEQTAWSVRDRLSLDTWRTIHALTV
                     NEELPAADAPFQPPAARFYLDALVRRTAALSGLSAENMTRGPNWLFMDLGRRLERAQH
                     LAWLVRQTVAFPDARETEHMRILLEIDDSAMTYRSRYLNVFQLVPFVDLLLLDENNPR
                     SCAFQLAAIESHLRELPRITLAQRSDVPRTIAHEMRAAAANAHPARLAFCESGARTGL
                     IELTDAITSSAGELSDAIADAYFQHASRSRTGSGSILEA"
     gene            complement(2975..>4983)
                     /locus_tag="VNN98_03365"
     CDS             complement(2975..>4983)
                     /locus_tag="VNN98_03365"
                     /inference="COORDINATES: protein motif:HMM:NF021424.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="transglutaminase family protein"
                     /protein_id="HWM61159.1"
                     /translation="TDAIAQKLGLETSYIVPAFEDFWHHLAQERALAANVDPSDSKLE
                     DPELRARLARVFERGLSHAVGYVLPVEKGTQRWLSEHWTTRSGHLFLMPGDSSIGFRL
                     PLNSLPHVPPQARSFVPPPDPFAPLPPLELPEKAGQSYTNGHTPPLGGPFRAINSQIT
                     ALESEPAVRTALTVEPRDGRLCVFMPPTPAAGDYFTLLAAIEESAERLGAAVHIEGYP
                     PPFDPRVNVIKVTPDPGVIEVNIHPAKNWREQVDITKALYDEAAACRLSAEKFLLDGR
                     HTGTGGGNHIVLGAQTPPDSPFLRRPDMLKSIIAYWQNHPCLSYLFSGLFIGPTSQAP
                     RLDEARHESLYELEIAFDEIPSRAAANIPPWLVDRVFRNLLADSSGNTHRTEICIDKL
                     YSPDGPTGRLGLVEFRGFEMPPHAEMSLAQSLLLRALIARFWREPYRTNLVRWGTGLH
                     DRFMLPHFVWADLVDVIANMNDHGFTFDAEWFRPHWEFRFPLAGTVAYEGVELQLRTA
                     LEPWNVMAEENTAGGTARFVDSSVERLEVKASGLTAGRHKVLVNGRTMPLRGTAQGEA
                     VAGMRFKAWQPPHGLHPTIPAQAPLIVEIWDGWRKRSLGGCTYRVAHPGGRNSEIFPV
                     NANEAEGRRLARFEPFGFTGGIFEASQEDPNPDFPYTLDLRRGA"
BASE COUNT          893 a         1564 c         1701 g          825 t
ORIGIN      
        1 cagcagcggg cggcgcggcg gaaaactcac actgccatag gcggcgatgt cgctgtgaaa
       61 tttggtcaga ggcgaatcga acagatactg caccacgtcg cgcgcttcat cgctctgcgg
      121 gttttccagc atgccccgca cttcctccca gggcaggctg tcgcgcgaaa tccgctccgg
      181 tgcggcgtcc actgtgactc tgctctccgc tagcacttcc agatgggtat gcggctggtc
      241 gatggaaaac cattcgcaag ggttttggaa ataatcctcg cgccccaccc ggctggcggg
      301 ctccaggctc aaggtgatgg cgctgtcatg caccgattgc agcggtgtgc tgcgcgggcg
      361 caaatgcgcc aggtgccagg agtgggaaac atcctgcagg tagcgatagg tggtgcgatg
      421 gcggacgaag tattccatta cgcctccagg atcgagccgc tgccggtgcg gcttcgcgag
      481 gcatgctgga aataggcatc ggcaatggcg tcggacagtt cccccgcact ggaggtgatg
      541 gcgtcggtca gctcgatcaa cccggtgcgc gcacccgatt cgcagaaggc cagccgcgcg
      601 ggatgagcgt tggcggcggc ggcgcgcatt tcatgggcga tggtgcgcgg cacgtcgctc
      661 cgctgggcca gggtgatgcg gggcagttcg cgcaaatggc tttcaatggc ggccagctgg
      721 aaggcgcagg agcgcggatt gttctcgtcc agcagcagca agtccacgaa gggcaccagc
      781 tggaagacat taagatagcg cgaacgatag gtcatggcgc tgtcgtcgat ttccagcagg
      841 atacgcatat gctcggtctc ccgcgcatca gggaaggcca cggtctggcg taccagccag
      901 gccaggtgct gcgcccgttc caggcggcgg cccagatcca tgaacagcca gttggggcca
      961 cgggtcatgt tttccgctga caagccggac agcgcggcgg tgcggcgcac cagcgcgtcg
     1021 agatagaagc gtgcggcggg cggctggaac ggcgcgtctg ccgccggcag ttcttcattg
     1081 acggtgaggg cgtgaatggt gcgccaggtg tccagcgaca ggcggtcgcg caccgaccag
     1141 gcggtttgtt ccaccctgag caacaaccgc tgcaagcctc gggaattgcg cgggctgtag
     1201 atcagcagct gcagttcttc catcaacgcc tgatcgtcgg cgatttcctc cagcggcgta
     1261 tcgctggcct ggctgaaggg gatcaggagc ttgcgggcca cgtccagcgc ggccgccggc
     1321 tcgtcgctca cccgcgccgc cacggcgcgc aggatgcgca caaagctttc ggtgcgctcg
     1381 gcatagcggc ccagccagaa cagattgtcc atggcgcggc tgggcgcgga ttcgccgtgg
     1441 cgcttgatct ccagcatgcg cccgccattg gccagcaggc tgaaactgtc caccggggca
     1501 tttgagatca cccaggcatc cttgctggag gcgcccgact gcatggacag cgcgcgcatc
     1561 gtatcgtcgg cggcgacgcg ggtgagcccg ccgggcatca ccatccagcc cgacggcgtc
     1621 caggcggcga agacgcgcaa ggaaacaggc ttggcgccga atttgccctg ctcgaacacg
     1681 ggcgccagcc ccaagggcga aatctcctgc agcaccatgg tttcgccgcg ctgcttcagc
     1741 tgcgcgatgg cgcgctcgcg ctcctgggcg ctcatctcgg cgcccaactt tccgctcgac
     1801 cggcgcgaga acagcgggcg ggcgtcaaag gcatcgcgca gaatcgcttg gttcatccgc
     1861 gccagggctt ccttgcggcc ccattcggta ccgcaccaga tggtggcgat gtcggggatc
     1921 ttcagttctt cgcccagcag cgcctgcgac acggcgggca aataggcgtc catggcgggg
     1981 gattcgatga cgccgccgcc caaggcattg gccagcacca cgccgccggc gcgcaccgct
     2041 tccaccagcc ccggcacgcc cagcgcgctg tcgccgcgaa gctccaaggg gtcgcagaaa
     2101 tcggaatcga cgcggcggaa gatggcggcc acccgctcca gcccggtcag ggtcttgagg
     2161 aagacctcgc cgtcccgcac cgccaaatcg tcgccctgca ccagggtcag gcccagataa
     2221 tgggcgagat agacatgctc gaaataggct tcgttgtagg gccccggcgt cagcagcacg
     2281 gcgcggtcgc ggcgcgacgc gcccatctcc aaaatgcttt cgcggtaggc attgaagaag
     2341 gcggccagcc gcgccacgcg catgtcgccg aaattttcgg gaaaggtctg ggagacgacc
     2401 aggcggtttt ccaaagcata gcccagcccg ccgggggcat cgacacggct ggccatgacc
     2461 ttccacgcgc catcgggtcc gcgcgccaga tcggcggagt aaagatggac atgaacatcg
     2521 cgcgccgggc tgatgccgca cagcgggcgc aggaactggg gatggccggt gaccagatgc
     2581 gccggcaaca cgctttcgcg gatcaggcgc tgggggccgt aaatgtcgcg cagcagcagg
     2641 tcggccagca tggcgcgctg gatcaccgcc gcttcgatca ccttccagtc ggtggacgac
     2701 aggatgaagg gcacgatgtc cagctgccag ggccgcgcct tgccgccgcg atcgtcatag
     2761 acgttatagg tgacgccatt gtcctggacc gtggcgcggg cggatgcctg gcggcggtcg
     2821 aactcatccg gcgacaattg ggtgagggtg cgggcgaaag cgcgccagtg cggccgcacc
     2881 tgaccgtcga cgccgcgcaa ttcgtcaaag cgggataaag cgggactaac cggttcggcg
     2941 acttccgaca cttatttact catactttgg cgactcaagc gcctcggcgc aggtcgagag
     3001 tataggggaa atcgggattg gggtcctctt ggctcgcttc aaaaatccca ccggtgaaac
     3061 cgaagggctc gaagcgggcc agccggcggc cctccgcttc gttggcgttg acggggaaga
     3121 tttcggaatt gcgcccgcct ggatgggcga cgcggtaggt gcagccgccc aggctgcgct
     3181 tgcgccagcc gtcccagatt tcgacgatca ggggggcctg ggccggaatg gtggggtgca
     3241 ggccgtgcgg gggttgccag gccttgaaac gcatacccgc caccgcctcg ccctgcgccg
     3301 tgccacgcag cggcatggtg cggccattga ccagcacctt gtgacggccg gcggtcaggc
     3361 cgctggcttt gacttccagc cgctcgaccg aggaatcgac aaagcgcgcg gtgccgccgg
     3421 cggtgttttc ctccgccatc acattccagg gctccaacgc ggtgcgcagc tgcaattcca
     3481 cgccttcata ggcgaccgtt ccggccagcg ggaaacggaa ttcccaatgg gggcggaacc
     3541 attccgcgtc aaacgtgaag ccgtgatcgt tcatgttggc gatcacgtcc accagatcgg
     3601 cccagacaaa atgcggcagc atgaaccggt catgcaggcc cgtgccccag cgcaccagat
     3661 tggtgcgata aggctcgcgc cagaagcgtg cgatcagggc ccgcagcagc agcgactgcg
     3721 ccaggctcat ctcggcatgg ggcggcatct cgaagccgcg gaattccacc agccccagcc
     3781 ggccggtggg accgtcgggc gaatagagct tgtcgataca gatttcggtg cggtgggtat
     3841 tgccgctgga atcggccagc agattgcgga acacccggtc caccagccag ggcggaatat
     3901 tggcggcggc gcgcgagggg atctcgtcga aggcgatttc cagttcgtac agcgattcgt
     3961 ggcgggcttc atccaggcgc ggcgcctggc tggtggggcc gatgaacagg ccggagaaga
     4021 ggtaggacag gcaggggtgg ttctgccaat aggcgataat gcttttgagc atatcggggc
     4081 ggcgcaggaa gggactgtcg ggcggggtct gtgcgcccag cacgatatga ttgccgccgc
     4141 cggtaccggt gtggcggcca tcgagcagga atttttccgc cgaaagacgg caggccgccg
     4201 cctcgtcata cagcgccttg gtgatgtcca cctgctcacg ccaattcttg gcgggatgga
     4261 tattgacttc gatgacgccg ggatcgggcg tcaccttgat gacattgacg cgcggatcga
     4321 agggcggggg atagccttcg atatgcactg ccgcgcccaa ccgctccgcc gattcctcaa
     4381 tcgccgccag caaggtgaaa taatcacccg ccgcgggggt cggcggcatg aacacgcata
     4441 gcctgccgtc gcgcggctct accgtcaggg cggtgcgcac tgccggttcg ctttccaagg
     4501 cggtgatttg gctgttgatg gcgcggaacg gaccgcccag cggcggcgtg tggccgttgg
     4561 tatagctttg gccggctttt tccggcaact ccagcggcgg caacggcgcg aaaggatcgg
     4621 gcgggggcac gaagctgcgc gcctgcggcg gcacatgggg cagcgaattc agcggcaggc
     4681 ggaaaccgat ggaggaatcg ccgggcatca ggaacagatg gccgctgcgc gtggtccaat
     4741 gctcgctcag ccagcgctgg gtcccttttt ccaccggcag cacataaccc accgcatggc
     4801 tgaggccgcg ctcgaatacc cgcgccagcc gtgcccgcaa ctccggatct tccagcttgg
     4861 aatcgctggg gtccacattg gcggccaggg cgcgctcctg cgccaggtga tgccagaagt
     4921 cctcaaaagc cgggacgatg taggacgttt ccagtcccag cttctgcgcg atggcgtcgg
     4981 tca
//
LOCUS       DATMDK010000175         2474 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_998207,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000175 DATMDK010000000
VERSION     DATMDK010000175.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2474)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2474)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2474
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_998207"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>2474
                     /gene="metH"
                     /locus_tag="VNN98_03370"
     CDS             <1..>2474
                     /gene="metH"
                     /locus_tag="VNN98_03370"
                     /EC_number="2.1.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008332965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008705 - methionine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0009086 - methionine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="methionine synthase"
                     /protein_id="HWM61160.1"
                     /translation="LTPDLNFINVGERTNITGSAKFRKLIAANDYEAALEVARSQVEN
                     GAQIIDINMDEGLIDSEAAMTRYVNMIAGEPDISKVPLMIDSSKWTVIQAGLKCCQGK
                     PIVNSISMKEGEAQFIERAQECLRFGAAVVVMAFDEIGQADTRKRKLEICKRAYNILV
                     NQVGFPPEDIIFDPNIFAVATGLEEHNEYGKAFIEATAEIRAACPHAHISGGVSNFSF
                     SFRGNEKVREAMHSVFLFHAIKAGMDMGIVNAGQLTVYQDIPTPLREGIEDVLLNRCT
                     DSTERLLTLAQEYRGDGSVAEVEDAAWRLLPVIERITHAMVHGIDAFIVSDTEEARAA
                     ATRPLDVIEGPLMAGMNVVGDLFGSGKMFLPQVVKSARVMKKAVAYLLPFMDADKSVV
                     KEPAGRIIMATVKGDVHDIGKNIVGVVLQCNGYEVIDLGVMTPTQKILDAAIEHKANI
                     IGLSGLITPSLDEMVHVASEMERQGFDIPLLIGGATTSRVHTAVKIDPSYRRGQTVYV
                     TDASRAVGVASSLLSKDSGAGYAADIRAEYEKIAHGHANQRAGGKRLTITQARANRAR
                     ADFSSYAPPAPSFFGTRKYTNYDLGELATYIDWTPFFQTWELAGPYPAILSDDKVGKA
                     ATDLFNDAQKMLAKIIEGKWLQASGVIGFWPANQSPDTVDDIVIYGDKARKFPIQTLH
                     TLRQQMAREPGRPNLALSDFIAPVGVEDYIGGFVVTAGLGEDKHIKRFEAAKDDYSAI
                     LLRALADRLAEAFAERMHEMVRRNYWGYAPDEALGNQDLIKEAYRGIRPAPGYPAQPE
                     HSEKAILFKLLDAEDKIGVKLTESYA"
BASE COUNT          510 a          745 c          770 g          449 t
ORIGIN      
        1 ccctgacccc cgatttgaac ttcatcaatg tcggtgagcg caccaacatc accggctcgg
       61 ccaagttccg caagctgatc gcggccaacg actatgaagc ggcgctggaa gtggcgcgca
      121 gccaggttga gaacggcgcc cagatcatcg acatcaatat ggacgagggg ttgatcgatt
      181 ccgaagcggc gatgacccgc tatgtcaaca tgatcgcggg cgagccggac atttccaaag
      241 tgccgctgat gatcgacagt tccaaatgga cggtgatcca ggcggggctg aaatgctgcc
      301 agggcaagcc gatcgtcaat tccatcagca tgaaggaagg cgaggcgcag ttcatcgaac
      361 gcgcccagga atgtttgcgc ttcggcgccg ccgtggtggt gatggctttc gacgagatcg
      421 gccaggccga cacccgcaag cgcaagctgg aaatctgcaa gcgcgcttac aacatcctgg
      481 tgaaccaggt cggctttccg ccggaagaca tcatcttcga tcccaatatc ttcgcggtcg
      541 ccacgggcct cgaagagcat aacgaatatg gcaaggcttt catcgaggcc acggcggaga
      601 ttcgcgccgc ctgtccgcat gcccatatct cgggcggtgt ctccaatttc tccttctcct
      661 tccgcggcaa tgaaaaagtg cgggaggcga tgcattcggt gttcctgttt cacgccatca
      721 aggcgggcat ggacatgggc atcgtcaatg ccggtcagct cacggtctat caggacattc
      781 ccacgccctt gcgcgaaggc atcgaggatg tgttgctcaa ccgctgtacg gactccaccg
      841 aacggctact gactttggcg caggaatatc gcggcgacgg ttcggtggcc gaagtggaag
      901 acgccgcctg gcgcttgctg ccggtgatcg agcgcatcac ccatgccatg gtgcatggca
      961 tcgacgcctt tatcgtgagc gataccgaag aggcgcgcgc cgccgccacc cggccgctgg
     1021 acgtgatcga aggcccgctg atggcgggca tgaatgtggt gggcgatctg ttcggttccg
     1081 gcaagatgtt cctgccccag gtggtcaagt ccgcccgggt gatgaaaaag gcggtggctt
     1141 accttctgcc tttcatggac gcggacaaga gcgtggtgaa agaacccgcc gggcgcatca
     1201 tcatggcgac ggtgaagggc gatgtgcatg acatcggcaa gaacattgtc ggcgtggtgc
     1261 tgcagtgtaa cggctatgag gtgatcgact tgggggtgat gacgccgacc caaaagatcc
     1321 tggacgccgc catcgagcac aaggccaaca tcatcggcct gtccggcctg atcacccctt
     1381 cgctggacga gatggtgcat gtggccagtg agatggagcg ccagggcttc gatattccgt
     1441 tgttgatcgg cggggcgacc acgtcacgcg tgcatacggc cgtgaagatc gacccttcct
     1501 atcgtcgcgg ccagaccgtc tatgtcaccg acgccagccg tgccgtgggc gtggcctcca
     1561 gcctgctcag caaagatagc ggcgccggct atgccgccga catccgcgcc gaatatgaaa
     1621 agatcgccca cggccatgcc aaccagcggg ccggcggcaa gcgcctgacc atcacccagg
     1681 cgcgcgccaa tcgcgcgagg gcggattttt ccagttacgc gccgccggcg cccagctttt
     1741 tcggcacccg caaatatacc aattacgatc tgggcgagct ggccacatac atcgactgga
     1801 cacccttctt ccagacctgg gaactggccg ggccgtaccc cgccattctc agcgacgaca
     1861 aggtgggcaa ggccgcgacc gacctgttca acgacgcgca aaagatgctg gccaagatca
     1921 tcgaaggcaa atggctgcag gccagcggcg tgatcggctt ctggcccgcc aaccagtcgc
     1981 ccgacactgt cgacgatatc gtgatttatg gcgacaaggc gcggaaattt ccgattcaga
     2041 ccttgcacac cctgcgtcag caaatggcgc gcgagccggg gcgccccaat ctggcgctgt
     2101 cggacttcat cgcgcccgtg ggcgtggagg attatatcgg cggctttgtg gtgacggcgg
     2161 ggcttggcga ggacaagcac atcaagcggt tcgaggcggc caaggatgat tactccgcca
     2221 tcctgctgcg cgctttggcc gaccggctgg cggaagcctt tgccgaacgc atgcatgaga
     2281 tggtgcgccg gaactattgg ggctatgcgc cggatgaggc gttgggcaac caagacctga
     2341 tcaaggaagc ctatcgcggc atccgtcccg cgccgggcta tcccgcccag ccggaacatt
     2401 cggaaaaagc tatcctgttc aagctgctgg atgcggaaga caagatcggc gtcaagctga
     2461 ccgaaagcta tgcc
//
LOCUS       DATMDK010000176         2279 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_557826,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000176 DATMDK010000000
VERSION     DATMDK010000176.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2279)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2279)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2279
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_557826"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1303
                     /locus_tag="VNN98_03375"
     CDS             <1..1303
                     /locus_tag="VNN98_03375"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61161.1"
                     /translation="GNTGSWAPMSADDELGLVYVPVELPQTDMLGVSRTGPDLFSESL
                     VALDIETGTRKWHYQMIHHGLWDRDISCAGILCDIPHNGKTIKAIAQPTKQGWVYVLD
                     RTNGKPVWPIPEKPVPKGIVPGEWYSPTQPMPSAPPPFAKQGVSAADLVDWTPEIKAR
                     ALEIASHYHMGPLFEPPALTSDKLFGTLTLPGLQGGANWPGGSYDPETHTLYVFAKNQ
                     FEVTGIVVGPDGKVFQRGGQPAAGSADPNGGAFGGVASLTGQTGRGRGSVGRDGLNDP
                     IVPGMISIAGIPLMKPPYGIITAIDLSKGTIAWQSVHGETPDAIRNNPLLKGVTIPRT
                     GQSGILGTLTTKTLVICGDCGLFTDEQGRKGARLRAYDKATGEQKGAVFMDKVQTGAA
                     MTYMHQGKQYIVTAVGSSFGADLVAYRLPGEAAAAPRAEER"
     gene            1343..>2279
                     /locus_tag="VNN98_03380"
     CDS             1343..>2279
                     /locus_tag="VNN98_03380"
                     /inference="COORDINATES: protein motif:HMM:NF024753.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-binding-like beta-propeller repeat protein"
                     /protein_id="HWM61162.1"
                     /translation="MVFVTRRRMLSSTAVVLMLPSALPAQAVPAPDTEWRNYAADLAS
                     TRYAPLDQINAGNFDHLEVAWRFPSAMLGSRAEYTWEATPLVIKGRLYTTAGARRDVV
                     CLDAVSGEMLWLFRKDEGTRARNAPRQYSGRGLAYWSDGREERILYVTPGYQLVALDA
                     KTGLPVTGFGENGMVDLKLNDDQIIDPLDGEIGLHATPTIVRNVVIVGAAHASGSVPG
                     NKPRAKGYVRGFDVKTGKRLWIFHTIPMKGEFGYESWIRPGEAEKATNTGCWAQMSVD
                     EELGLAYLGIEIPSADESGIRRQGNSLFSNCLVAVE"
BASE COUNT          419 a          746 c          737 g          377 t
ORIGIN      
        1 cggcaacacc ggctcctggg cgccgatgtc ggcggatgac gagctggggc tggtctatgt
       61 cccggtcgaa ctgccgcaaa ccgatatgct gggcgtcagc cgcaccggtc cggatctgtt
      121 ctctgaaagc ctggtggcgc tagacatcga gaccggcacg cgcaagtggc attaccagat
      181 gatccatcac ggtctgtggg accgcgatat ctcctgcgcc ggcatcctgt gcgacatccc
      241 gcacaacgga aagaccatca aggcgatcgc ccagcccacc aagcagggct gggtctatgt
      301 gctggaccgc accaacggca agccggtctg gccgatcccg gaaaagccgg tgcccaaggg
      361 catagtgccg ggcgaatggt attcgcccac ccagccgatg cccagcgcgc cgccgccttt
      421 cgccaagcag ggcgtgagcg cggccgatct ggtggactgg acgcccgaga tcaaggcgcg
      481 ggcgctggag atcgccagcc attatcacat gggcccgctc ttcgagccgc ctgccctgac
      541 cagcgacaag ctcttcggca ccctgaccct gccgggcctg caaggcggcg ccaattggcc
      601 gggcggttcc tacgatcccg aaacccacac gctgtacgtc ttcgccaaga accagttcga
      661 ggtcacgggt atcgtggtcg gccccgacgg caaagtattc cagcgcggcg gccagccggc
      721 ggccggcagc gccgatccca atggcggcgc ctttggcggc gtcgccagcc tgacgggcca
      781 gaccggccgc ggccgcggat cggtcgggcg ggacggcctg aacgatccca tcgttcccgg
      841 catgatttcc atcgccggca ttcccctgat gaagccgcct tacggcatca tcacggcgat
      901 cgacctgtcc aaaggcacca tcgcctggca gagcgtgcat ggcgaaactc cggatgcgat
      961 acgcaacaac cccctgctca agggcgtcac catcccgcgc accggccagt ccggcatcct
     1021 gggcaccttg accaccaaga cgttggtgat ctgcggcgat tgcgggctgt tcaccgacga
     1081 acagggccgc aaaggcgcgc ggctgcgcgc ctatgacaag gccaccggcg agcaaaaggg
     1141 cgcggtgttc atggacaagg tgcagaccgg cgcggcgatg acctacatgc atcaaggcaa
     1201 gcaatatatc gtcaccgcgg tgggcagttc ctttggcgcg gacctggtcg cctaccgcct
     1261 gccgggcgaa gccgcggcgg cgccgcgcgc cgaagagcgc tgacttttta taaaagacaa
     1321 cgtcgcgatg ggaggggcaa gtatggtgtt cgtgacacgg cgcaggatgc tgtcttcgac
     1381 ggctgtggtg ctgatgctgc catcagcgct gccggcgcag gccgtacctg cgcccgatac
     1441 cgagtggcgc aactatgcgg ccgacctggc cagtacccgc tatgcgccgc tggaccagat
     1501 caacgccggc aatttcgatc acctggaagt cgcctggcgc tttccgtccg ccatgctggg
     1561 atcgcgcgcc gaatatacct gggaagcgac tcccctcgtc atcaagggac ggctctatac
     1621 caccgccggc gcccgccgcg atgtggtctg cctggatgcc gtcagcggcg agatgctttg
     1681 gcttttccgc aaggatgagg ggacgcgcgc gcgcaatgct ccgcgacaat attccggccg
     1741 cggccttgcc tattggagcg acggccggga ggaacgcatt ctgtatgtca cccccggcta
     1801 tcagctggtg gcgctggatg ccaagaccgg cttgcccgtt acggggttcg gtgagaatgg
     1861 catggtcgat ctcaaactga atgacgacca gatcatcgat ccccttgacg gcgagatagg
     1921 cctgcatgcc acgcccacca tcgtgcgcaa tgtggtgatc gtgggggcgg ctcatgcttc
     1981 gggcagcgtg ccgggcaaca agccgcgcgc caagggctat gtccgcggct tcgacgtgaa
     2041 gacgggcaag cggctctgga tcttccatac cattccgatg aagggcgagt tcggctacga
     2101 aagctggatt cggcccggcg aggccgagaa ggccaccaac accggctgct gggcgcagat
     2161 gtcggtcgat gaggaattgg gcctggccta tctgggcatc gaaatccctt ccgccgacga
     2221 gtccggaatt cgccgccagg gcaacagcct gttcagcaac tgcctggttg ccgtcgagc
//
LOCUS       DATMDK010000177         6152 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1227272,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000177 DATMDK010000000
VERSION     DATMDK010000177.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 6152)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6152)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6152
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1227272"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1089
                     /locus_tag="VNN98_03385"
     CDS             <1..1089
                     /locus_tag="VNN98_03385"
                     /inference="COORDINATES: protein motif:HMM:NF015862.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme-binding protein"
                     /protein_id="HWM61163.1"
                     /translation="VFSTAANVGSLAAVNGYFAGTIIAGQVYGTEGSGIRKASSAEFN
                     NPDAFILTDGSGANRYPALAGSDAADVGTALSAAEVSAVLEEAFKIMSRSRAAIRQPL
                     DSRAQVSVSVVDTRGKILGVVRAPDAPIFGIDVALQKARTAAFFSGAKAASDLSSDPS
                     ADVRSFIPAARTFLSNTTAFTGATAFSSRAIGNLSRPFFPDGQYNNPNGPFSRPIAKW
                     SPFSTGLQSALVLTNLGQHLQYVTGASATDTPQRCSFIPDAAPGLNRLQNGIQIFSGG
                     VPIYRGNTLVGAVGTSGDGIDQDDMVSFLGLFNGGARVSTIGEAPTGIRSDQIVIQVS
                     GNSVRLRYVNCPFAPFLDTSDQNVCQNK"
     gene            1086..2963
                     /locus_tag="VNN98_03390"
     CDS             1086..2963
                     /locus_tag="VNN98_03390"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61164.1"
                     /translation="MTRLRAFLLTTALLTAPAAAQDLPKPDASAKSDAAAAPIVIDAS
                     KPAPKPVQMAQKDSVPATQESPETRDIPGRLRNYERPVPQNNQGAVSAPPPEAFPTDW
                     VPVPDRWRIVDALGVGGQWWDPYNQNVIKGDRPILGTNDWFLDLTGISDSVAEQRSFP
                     TPVSIQTTQRPGSLDVFGQADSGLYTQTFIAGADIYKGSTAYKPPEIEFRFAVAMNVN
                     YAQVSERRVLSVDPAQPTHRLDGLVGLQEAFVDYHIRNVDDRYDFDSIRVGIQPFSSD
                     FRGFLFQDNQLGVRLFGDRDNNRYQYNLGFFARLEKDTNSGLNDITQMVRKDYVAVAN
                     VYAQDLPIPGFTSELTAVYNMNREADDIHIDFNGFPSRPALLGDDRPRDYDVVYLGYS
                     GDGHWGDVNLTVTGYGALGQDRNNFFTGMPADIASYFFVAEPSMDFDWVRVRLSALYA
                     SGDDNPYDNKEGGFDAIFENPQFAGSDTSYWIRQSIPFAGGGRAVSLNGRNGILNDLR
                     SSKEEGQSNFNNPGTVLLGAGGDFDVLPELRVSANVNHFWFADTTIVQALRQEGSIPN
                     DLGWDTSLALTYRPWLTQNIVFRASGAVLSPGAGFGDLFTNSSHDGQYYSVLLNAIAT
                     F"
     gene            2972..>6152
                     /locus_tag="VNN98_03395"
     CDS             2972..>6152
                     /locus_tag="VNN98_03395"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61165.1"
                     /translation="MTAGWHKKSLLLVALVLLAGAAATRLLAGDEDVAVERTYVKTPD
                     APRGQTQAEADAKSAGCVSCHTASDAPSMHDNQAVLLGCADCHGGDAAVTAPSGLPKA
                     DPQYASLRDRAHVLPRYPENWHYPSSANPKESYTLLNREAPEYVRFVNPSDYRVVRES
                     CGACHMDEITAAERSLMATGAMFYEGASYNNGIVPMKGGVDNVYGLKGVGIGEAYTRD
                     GQPAKVVSPGSPPGTVTPEQEKRGALAALIPLPTWQVMPPGDIFRVFERGGRNIGTEF
                     PEIGLPDSTGSIQRLEEPGRPDIKQSNRGPGTGLRVAIPVLNIHKTRLNDPFMWFMGT
                     NDQPGDYRQSGCAGCHVIYANSREPRESSVYAPFGRDGKSQTVDPTINKDESGHPIKH
                     QFTRAIPTAQCMNCHMHQPNMFLNTYLGYTMWDYEADAPSMWPKEQKYPTSEEMRKVL
                     DRNPEGAAPRGKWADVDFLRNVYDLNPKLKDTQFADYHGHGWNFRAIFKRDRDGNLLD
                     KDGKIVSNDDPEKWRKKGVGKFAPVGVNPGKAVHMMDIHAEKGMQCSDCHFAQDSHGS
                     GLIMGEVANAVEIGCKDCHGTVGALPTLKTSGPAAPPGGTDLAQLRNQDGSRRFEWSE
                     EGGRPVLYQTSSLDPSLKWKVSLVKDTVDPTSPNYNEKAARAKLMSRTTDSGKQLQWG
                     PGVDAKNLAHKDSEMACFTCHTSWTTSCGGCHLPIEANWKTDSHKYEGQTTRNYATYN
                     PQVARDDMFQLGIHSTIKGNEIAPVRSSSALVLSSTNLNRDRIYIQQPPISASGFSSQ
                     AFAPHFPHTVRTTETKTCSDCHISAANDNNAIMAQLLLLGTNFVNFVGLNAWTGLEGG
                     IEAVRVTEWNEPQAVFGSYLQKYAYPDYYKAHVERNKRELVDWRRGDLFGKGDTNVED
                     IFNVKHTTPDAVRCLQLRGEYLYTAQGGGGFQVLDAASVANKDISQKVITAPFSPLGQ
                     SIRLASKNATCMALPTGQSIAPERNTPEMRKYNQEQAFHPIYNYAFITDAEEGLILVD
                     VNTFNDRDPRNNNIKRALTWNPYGLLDGGR"
BASE COUNT         1190 a         2058 c         1811 g         1093 t
ORIGIN      
        1 gtcttctcca ccgccgcaaa tgtcggcagc ctggcggcgg tgaacggcta tttcgccggt
       61 acgatcatcg ccggccaggt ctatggcacg gaaggctccg gcatccgcaa agcttccagt
      121 gccgagttca acaatcccga tgccttcatc ctgacggatg gttcgggcgc caaccgctat
      181 cctgcgcttg cgggcagcga tgccgccgat gtcggcaccg cgctcagcgc tgccgaagtc
      241 agcgctgtgc tggaggaagc cttcaagatc atgagccggt cgcgcgccgc catccgccag
      301 ccgttggaca gccgggccca ggtctcggtc tcggtggtgg acacgcgcgg caagatcctg
      361 ggcgtggtgc gcgcacccga tgcgccgatc ttcggcatcg atgtggcgtt gcagaaggcg
      421 cgtaccgccg cctttttctc cggcgccaag gcggcgtccg atttgagcag cgatcccagc
      481 gccgatgtac gcagcttcat tccggcggcg cgcaccttcc tgagcaatac caccgctttc
      541 accggcgcca cggccttttc ctcgcgcgcc atcggcaatc tgtcgcgacc tttcttcccg
      601 gacggtcagt acaacaatcc caacggtccc ttctcgcggc cgatcgccaa atggagcccg
      661 ttctccaccg gcctgcagtc ggctttggtt ctcaccaatc ttgggcagca cttgcaatac
      721 gtaaccggcg cctcggccac cgacacgccg cagcgctgca gcttcattcc ggatgccgcg
      781 ccgggactga accggctgca gaacggcatc cagatattct cgggcggcgt gccgatctat
      841 cgcggcaaca cactggtggg cgcggtgggc acttcgggtg acggcatcga ccaagacgac
      901 atggtctcct tcctgggcct gttcaatggc ggggcgcggg tttccaccat cggcgaggcg
      961 cccacaggca tccgctccga ccagatcgtc atccaggtca gcggcaattc ggtgcggctg
     1021 cgctacgtga actgtccctt cgcgcccttc ctcgatacct ccgaccagaa tgtatgccag
     1081 aacaaatgac aagactccgc gcattcctgt tgaccacggc gctgctgacg gcgcccgctg
     1141 ctgcgcagga cctgcccaag cctgacgcgt ccgccaagag cgatgccgcg gcagcgccca
     1201 tagtgatcga tgcttccaag ccggccccca agccggtcca gatggcgcaa aaggattccg
     1261 tgccggcgac gcaggagtcg cccgaaactc gcgacattcc cggccgcctg cgcaattacg
     1321 aaaggccggt gccgcagaac aaccagggcg cggtgagcgc gccgccgccg gaagccttcc
     1381 ccaccgactg ggtccccgta ccggaccgct ggcgcatcgt cgatgcgctg ggcgtgggcg
     1441 ggcaatggtg ggacccctac aaccagaatg tcatcaaggg cgaccggccg atcctgggca
     1501 ccaatgactg gttcctcgac ctgaccggca tttccgacag tgtcgccgaa cagcgttcct
     1561 tccccacccc ggtcagcatc cagaccaccc agcgtcccgg cagcttggat gtgttcggcc
     1621 aggccgatag cgggctctac acccagacct tcatcgccgg tgccgacatc tacaagggct
     1681 ccaccgctta caagccgccg gaaatcgaat tccgtttcgc ggtggcgatg aacgtcaact
     1741 atgctcaggt gtcggaacgg cgggtgctgt cggtcgatcc cgcccaaccc acgcaccgct
     1801 tggacggact ggtggggctg caggaagcgt tcgtggatta tcacatccgc aatgtcgatg
     1861 accgctacga cttcgactcc atccgggtcg gcatccagcc cttcagctcg gactttcgcg
     1921 gtttcctgtt ccaggacaac cagctgggcg tgcgcctgtt cggcgaccgt gacaacaacc
     1981 gttatcagta caatctgggc ttcttcgcgc ggctggaaaa ggacaccaat tccggcctca
     2041 acgacatcac ccagatggtg cgcaaggatt atgtggcagt ggccaatgtc tatgcccagg
     2101 acctgccgat ccccggcttc acttccgaac tgaccgccgt ctacaatatg aaccgcgagg
     2161 ccgatgacat tcacatcgac tttaacggct ttccctcacg cccggcgctg ctcggcgatg
     2221 accgcccccg cgattatgac gtggtctatc tgggctatag cggcgacggt cattggggcg
     2281 acgtcaacct gaccgtgacc ggctatggcg cgctgggaca ggaccgcaat aacttcttca
     2341 ccggcatgcc cgccgacatc gccagctatt tcttcgtcgc cgagccttcg atggatttcg
     2401 actgggtgcg ggtgcggctg tcggcgctct atgcctcggg cgacgacaat ccctatgaca
     2461 acaaggaagg cgggttcgac gccatcttcg agaatccgca attcgctggc tccgacacca
     2521 gctactggat acgccagtcg ataccctttg ccggcggcgg ccgcgccgtc tccctcaacg
     2581 gccgcaacgg cattctcaat gacctgcgct cctccaagga agagggccag tccaatttca
     2641 acaatcctgg caccgttctg ctgggcgcgg gcggcgactt cgacgtgctg cccgaactgc
     2701 gcgtctccgc caatgtcaat catttctggt tcgccgacac caccatagtg caggcgttgc
     2761 gccaggaagg ctccatcccc aacgatctgg gctgggacac gtcgctggcg ctgacctatc
     2821 gcccctggct gacgcagaat atcgtgttcc gggcttccgg cgcggtgctg tcgccggggg
     2881 caggctttgg cgacctgttc accaattcca gccatgacgg ccaatattat tcggttctgc
     2941 tcaacgcgat cgcgacattc tagggcacgc gatgacagca ggctggcaca aaaaatcgct
     3001 tctgctggtg gccctggtcc tgctggcggg cgctgctgcg acccggctgc tggcgggcga
     3061 tgaagatgtc gctgtcgagc gcacttatgt gaagacgcct gatgcgccgc gcggccagac
     3121 ccaggctgaa gccgatgcca aaagcgcggg ctgcgtttcc tgccacaccg cttcggatgc
     3181 cccgtcgatg catgacaatc aggcggtgct gctgggctgc gccgactgcc atggcggcga
     3241 cgcggcggtg acggcaccgt cgggcctgcc caaggccgat ccgcaatatg ccagcctgcg
     3301 cgaccgcgcc catgtcctgc cgcgttatcc ggagaactgg cactatccca gttccgcgaa
     3361 ccctaaggaa agctacacct tgctcaaccg cgaggcgccg gaatatgtgc gcttcgtcaa
     3421 tccatcggac taccgggtgg tgcgggaatc ctgcggcgcc tgccatatgg acgagatcac
     3481 cgcggcggaa cgttcgctga tggccacggg cgccatgttc tacgaaggcg cctcctacaa
     3541 taacggcatc gtgccgatga aaggcggcgt cgacaatgtc tatggcctta agggcgtggg
     3601 catcggcgag gcctataccc gcgatggtca gcccgccaag gtggtgtcgc cgggctcgcc
     3661 gcccggcacc gtcacgccgg agcaggagaa gcgcggcgcg ctggcggcgc tgatcccgct
     3721 gccgacctgg caggtgatgc cgcccggcga catcttccgc gtcttcgagc gcggcggccg
     3781 caacatcggc acggaatttc ccgaaatcgg cctgcccgat tccaccggct cgatccagcg
     3841 gctggaagag ccgggccgtc ccgacatcaa gcagtccaat cgcggccccg gcaccgggct
     3901 gcgtgtcgcc attcccgtgc tcaacatcca caagacccgg ctcaacgatc ccttcatgtg
     3961 gttcatgggt accaacgacc agccgggcga ttatcgccag tcgggctgcg ccggctgcca
     4021 tgtgatttac gccaacagcc gcgagccccg cgaaagctcg gtctatgccc ccttcggccg
     4081 cgacggcaaa agccagacgg tggatcccac catcaacaag gatgagtccg gccatcccat
     4141 caagcaccag ttcacccgcg ccatcccgac ggcgcaatgc atgaactgcc acatgcatca
     4201 gcccaacatg ttcctgaaca cctatctggg ttacaccatg tgggactatg aggccgacgc
     4261 gccttcgatg tggccgaagg agcagaagta tccgacctcc gaagagatgc gcaaagtcct
     4321 ggatcgcaat cccgaaggtg ccgcgccgcg cggcaaatgg gcggatgtgg atttcctgcg
     4381 caatgtctat gacctgaacc ccaagctgaa agacacccag ttcgccgact atcacggcca
     4441 tggctggaat ttccgcgcca tcttcaagcg cgaccgcgat ggcaatctgc tggacaagga
     4501 cggcaagatc gtcagcaacg acgatccgga gaaatggcgc aagaagggcg tgggcaagtt
     4561 cgcccccgtg ggcgtcaatc ccggcaaggc ggtgcatatg atggacattc atgctgaaaa
     4621 gggcatgcaa tgttccgact gccatttcgc ccaggacagt catggttcgg gcttgatcat
     4681 gggcgaagtc gccaatgcgg tggagatcgg ctgcaaggat tgccacggca ctgtcggcgc
     4741 cttgcccacc ctcaagacct cgggccccgc cgcgccgccg ggcggcaccg atctggcgca
     4801 gttgcgcaac caggatggca gccggcgctt tgaatggtcg gaggagggcg gccgccctgt
     4861 gctgtatcag acctcgtcgc tggacccgtc cctgaaatgg aaagtgtcgc tggtcaagga
     4921 cacggtggac cccaccagtc ccaactataa tgagaaggcc gcccgcgcca agctgatgtc
     4981 gcgcaccacc gacagcggca agcagttgca atggggtccg ggtgtggatg cgaaaaatct
     5041 cgcgcacaag gacagcgaga tggcctgctt tacctgtcat acttcctgga ccacctcctg
     5101 cggcggctgc catctgccga tcgaagccaa ttggaaaacc gacagccaca aatatgaagg
     5161 ccagaccacg cgcaactacg cgacctacaa tccccaggtg gcgcgcgacg acatgttcca
     5221 gctgggcatc cattccacca tcaagggcaa tgagatcgcc ccggtgcggt caagctcggc
     5281 cctggtgctc agttcgacca acctcaaccg cgaccgcatc tatattcagc aaccgcccat
     5341 ttcggcctcg ggtttttcca gccaggcctt tgcgccgcac ttcccccaca cggtacgcac
     5401 caccgagacc aagacctgca gcgactgcca tatctcggcg gccaacgaca acaacgcgat
     5461 catggcccag ctgctgctgc tgggcaccaa tttcgtgaat tttgtcggcc tgaatgcctg
     5521 gacggggctg gaaggcggca tcgaggcggt gcgcgtcacc gaatggaacg agccccaggc
     5581 ggtgttcggt tcttatctgc agaaatacgc ctatcccgac tattacaagg cgcatgtcga
     5641 gcgcaacaag cgcgagttgg tcgactggcg gcgcggcgat ctcttcggca agggcgacac
     5701 caatgtcgaa gacatcttca atgtgaagca tacaacgccc gatgcggtgc gctgcctgca
     5761 gctgcgcggc gaatatctct ataccgccca gggtgggggc ggcttccagg tgctggatgc
     5821 ggccagcgtg gccaacaaag atatttcgca gaaggtgatc actgcgccct tctcgccgct
     5881 gggccagagc atccgcctgg cttcaaaaaa cgccacctgc atggcgctgc ccaccggcca
     5941 gtccatcgcc ccggaacgca acacgccgga aatgcgcaaa tacaatcagg aacaggcttt
     6001 ccacccgatc tacaattacg ccttcatcac ggatgcggaa gaaggcttga tcctggtgga
     6061 cgtcaacacc ttcaacgacc gcgatccgcg caacaacaat atcaagcgcg ccctgacctg
     6121 gaatccctat ggcctcctgg acggtggacg cc
//
LOCUS       DATMDK010000178         4047 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_3054200,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000178 DATMDK010000000
VERSION     DATMDK010000178.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 4047)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4047)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4047
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3054200"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..485)
                     /locus_tag="VNN98_03400"
     CDS             complement(<1..485)
                     /locus_tag="VNN98_03400"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61166.1"
                     /translation="MTKTLLLSVVAAAGLLLAGAGHAAPSTGAMIAEVQAALDKGDAQ
                     HAANLAGAALRDEGVAAGQRGRLQLYRGLAQELLGAPAEAMRDFTQALDTRALPPDER
                     AQALLQRGFLRDGLGRLDEAAADYAAVIALRGDGVATALNNRANIYRRQNRLADARRD
                     YL"
     gene            593..1471
                     /gene="galU"
                     /locus_tag="VNN98_03405"
     CDS             593..1471
                     /gene="galU"
                     /locus_tag="VNN98_03405"
                     /EC_number="2.7.7.9"
                     /inference="COORDINATES: protein motif:HMM:TIGR01099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003983 - UTP:glucose-1-phosphate
                     uridylyltransferase activity [Evidence IEA];
                     GO_process: GO:0009225 - nucleotide-sugar metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UTP--glucose-1-phosphate uridylyltransferase
                     GalU"
                     /protein_id="HWM61167.1"
                     /translation="MSAAKPVRKAVFPVAGMGTRFLPATKAIPKEMLPVVDKPVIQYA
                     VEEAREAGIEQFVFITGRGKHVIADHFDHAYELESLLEAREKTNELKSLLEMLPATGS
                     VGMIRQQKPLGLGHAVWCARHFVGNEPFAVLLPDDLMVGKPGALSQMIAAYNQVGGGI
                     IVAAEEKPKDEIKRYGVVDPGATRGNATEVKGVVEKPATGTEPSNLCVIGRYILQPEI
                     FGILDKQERGAGNEIQLTDAMAKMIGHVPFHAVKTDCARYDCGDKVGFLHANIAVGLS
                     RPDIAPALNAILKALV"
     gene            1468..2169
                     /locus_tag="VNN98_03410"
     CDS             1468..2169
                     /locus_tag="VNN98_03410"
                     /inference="COORDINATES: protein motif:HMM:NF022552.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjbF family lipoprotein"
                     /protein_id="HWM61168.1"
                     /translation="MIGRNPESLGSRALLGLAGAALLVLAGCSSGSSGNTNYSQFYQI
                     LRQSMSASFGKVRVTRDQAAAIPYATMGYSLDGGNQAVLILATDSGGELLWTSGAHVV
                     IVTRDGRITRTLGLDHDLSGMTGRDKAAPFAPAAAIRGPFTSLRLEDFPELGLYGVLV
                     SCRAQMVGRQTIKVLEQAIAAIRVDEACQSRKPDWSFVDTYWVDGDNGLVWRSRQHVH
                     PNGGVIETEIFRPPG"
     gene            complement(2377..2616)
                     /locus_tag="VNN98_03415"
     CDS             complement(2377..2616)
                     /locus_tag="VNN98_03415"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61169.1"
                     /translation="MRIFGAAILAASLLVTNAFAATLPAGKPAGVKKAQMEGNNALLI
                     IGGIGLAGLGIGLAASSNGGGPTASTTATIGTGTP"
     gene            2852..>4047
                     /locus_tag="VNN98_03420"
     CDS             2852..>4047
                     /locus_tag="VNN98_03420"
                     /EC_number="2.7.7.13"
                     /EC_number="5.3.1.8"
                     /inference="COORDINATES: protein motif:HMM:TIGR01479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004476 - mannose-6-phosphate isomerase
                     activity [Evidence IEA];
                     GO_process: GO:0009103 - lipopolysaccharide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="mannose-1-phosphate
                     guanylyltransferase/mannose-6-phosphate isomerase"
                     /protein_id="HWM61170.1"
                     /translation="MSTITPVILSGGAGSRLWPLSRSLFPKQLLALAGEHSLIQDTGL
                     RVAEADFAAPLIVCNIEHRFLIAEQMRQAGISPQAIVLEPVGRNTAPAAAIAALMVMQ
                     KDPKGVILLMPADHIVRNRTAFMQAVARATAAARQNHLVTFGITPDSPETGYGYIRRG
                     AALQGLDGCFAVARFVEKPDAATAASYIAAGDYGWNSGMFVFKAAVFLAELERLEPEL
                     LAQCRAALMKGEKDLDFFRLEGASFAKARSISIDYAVMERTDKAAVVPVEMGWSDIGS
                     WEALWNVAARDDCGNATKGDVLQHGARNCYLRSEGPLVAAVGVEDIVVVATQDAVLVS
                     HRNASQDVKRIVEQLERSGRELHTTHRKVYRPWGSYEGIDHGDKFQVKHITVSPGAKL
                     SLQMHH"
BASE COUNT          735 a         1301 c         1290 g          721 t
ORIGIN      
        1 agatagtccc gccgcgcgtc cgccagccgg ttctgccgcc ggtagatatt ggcgcggttg
       61 ttgagcgcgg tggccacgcc gtctcctctc aaagcgatga cagcggcgta atcggcggcg
      121 gcttcgtcca gccgccccag cccatcgcgc aagaagccgc gctgcaatag cgcctgcgcc
      181 cgctcgtccg gcggcagggc gcgggtatcc agcgcctgcg tgaaatcgcg catcgcctcg
      241 gcaggcgcac ccagcagttc ctgcgccagc ccgcgataga gctgcagtcg gccgcgctgg
      301 cccgcagcga cgccctcatc ccggagggcc gcgccagcca gattggcagc atgttgggca
      361 tcgcccttgt ccagcgcggc ctgcacttcg gcgatcatag cgcccgtact gggcgccgca
      421 tgtcctgcac cggccagcaa caggcccgcc gccgcaacca cagaaagcaa cagtgttttg
      481 gtcatggccc aattttgtca cagaggcccg aaaggcccca caaaactgga cagtaatggc
      541 ggggccatgc catgaaacag accgtttcac aaaacatccc ccggaaaaac gcatgtccgc
      601 cgccaaacca gtccgcaaag ccgtatttcc tgttgccggg atgggcaccc gctttttgcc
      661 ggcgaccaag gcgatcccca aggagatgct gccggtggtg gacaagccgg tcattcagta
      721 tgcggtggaa gaggcgcgcg aggcggggat cgagcagttc gtcttcatca ccgggcgggg
      781 caagcatgtc attgccgacc atttcgacca tgcctatgag ctggaatcgc tgctggaagc
      841 gcgcgagaag accaacgaac tgaaaagcct gctggagatg ctgcccgcca ccggctcggt
      901 ggggatgatc cgccagcaaa agccgttggg gctcggccat gcggtgtggt gcgcccgcca
      961 ttttgtgggc aacgagccgt tcgcagtgct gctccccgac gatctgatgg tgggaaagcc
     1021 cggcgcgctg tcgcagatga tcgcggccta taaccaggtg gggggcggca tcattgtggc
     1081 ggcggaagaa aagcccaagg acgagatcaa gcgctatggc gtggtcgatc ccggtgcgac
     1141 ccggggcaat gccaccgaag tgaagggggt ggtggaaaag cccgccaccg gcaccgagcc
     1201 gtccaacctg tgcgttatcg gccgctatat cctgcagccg gagattttcg gcatcctgga
     1261 caagcaggag cgcggcgccg gcaacgagat ccaactcacc gacgccatgg ccaagatgat
     1321 cggccatgtg ccgttccacg cggtcaagac cgattgcgcc cgttacgact gcggcgacaa
     1381 ggtcggcttt ctgcacgcca atatcgccgt cggcctctca cgccctgaca tcgctccggc
     1441 gctgaacgcc attctgaagg ccttggtgtg atcgggcgta atcctgaaag cctgggttct
     1501 cgggcgcttc tggggctggc gggcgcggcg ctgctggtat tggcggggtg cagttccggc
     1561 agttccggca acaccaacta ttcccaattc taccagatcc tgcgccagag catgtcggcc
     1621 agcttcggca aggtgcgcgt cacccgtgac caggcggccg cgatccccta cgccacgatg
     1681 ggctacagcc tggacggcgg aaaccaggcc gtcctgatcc ttgccaccga cagcggcggc
     1741 gagctgctct ggacctcggg ggcgcatgtg gtgatcgtca cccgcgacgg gcgcatcact
     1801 cgcaccctgg gcctggacca tgacctgtcc ggcatgaccg ggcgtgacaa ggcggcgcca
     1861 ttcgcccccg ccgccgccat ccgtggcccc ttcaccagcc tgcggctgga ggattttccg
     1921 gagctgggac tctatggcgt cctcgtatcg tgccgcgccc aaatggtggg gcggcagacc
     1981 atcaaggttc tggaacaggc gattgccgcc atccgggtgg acgaggcctg tcagagccgc
     2041 aagcccgact ggtcctttgt cgacacttac tgggtggacg gcgacaacgg cctggtctgg
     2101 cgctcgcgcc agcatgtcca tcccaacggc ggcgtgatcg agacggagat cttccggccg
     2161 ccggggtgat ctgcgttcga gcagattgcc ttgcctgctt cactggcgtt cgttcgccgg
     2221 gctggacgcc ctgcccgctt cgcgggcgtt cggcggacaa aaggtccacc ggacctttcg
     2281 tttatccgcg ttcggctggc tggacgccat cctcacccca caaaaaaagg gagagccgcg
     2341 aggctctccc cattcaattg gaaaattctg gaagtgttac ggagtgccgg tgccgatcgt
     2401 ggcagtcgtg ctggcggtcg ggccgccgcc attgctgctg gcggcaaggc cgatacccag
     2461 gccggccagg ccaattccgc cgatgatcag aagcgcgttg ttgccctcca tctgcgcctt
     2521 cttcacgcca gccggcttac cggcggggag cgtcgctgca aatgcgttcg tcaccaggag
     2581 gctggcggcc aaaatggctg caccgaatat ccgcattagg ttctccataa gcaaaggttt
     2641 tttaggggcg ttaaagccac ttctacgcgg ccttgcgcga tcctgtcaat tcgcgaggcc
     2701 gcgagtggtt cacaccccga gggaaagaag gtcactgtgt tgctgcggcg caacaattgg
     2761 tatttctgtc aaactgtcag ttcggcgtgc cccctccccc tgaagcccaa ctctgctaaa
     2821 taaaccgccc cctgtatgag cccactgtcc catgtccacg attacccctg tcatcctctc
     2881 cggcggcgcc gggtcgcggc tctggccgct gtcgcgcagc ctttttccca agcaattgct
     2941 ggctttggca ggcgagcaca gcctgattca ggataccgga ctgcgggtcg cagaggcgga
     3001 tttcgccgct ccgctgatcg tctgcaacat cgagcaccgc ttcctgatcg ccgaacaaat
     3061 gcgccaggcc ggtatttcgc cccaggccat cgtgctggaa ccggtagggc gcaataccgc
     3121 ccctgccgcc gccatcgccg ccttgatggt gatgcaaaaa gaccccaaag gcgtgatctt
     3181 gctgatgccc gcggatcata ttgtgcgaaa tcgcaccgcg ttcatgcagg ccgtggcccg
     3241 ggccaccgca gccgcgcggc agaatcacct ggtgaccttc ggcatcacac ccgactcccc
     3301 ggaaaccggc tatggctata tccggcgcgg cgcggcgctg cagggcctgg acggctgttt
     3361 tgcggtggcg cgctttgtcg aaaagccgga tgccgccacc gccgcaagct atatcgctgc
     3421 cggcgattat ggctggaaca gcggcatgtt cgtcttcaag gcggccgtgt ttctcgccga
     3481 actggaaagg ctggagccgg aattgctggc gcagtgccgc gccgcgctga tgaaaggcga
     3541 gaaggatctg gacttcttcc gcctggaggg tgcgtccttc gcaaaggcca ggtccatctc
     3601 gatcgactat gccgtgatgg agcgaaccga caaggcggcg gtggtgccgg tggagatggg
     3661 ctggagcgac atcggctcct gggaagcgct gtggaacgtc gcggcgcgtg acgattgcgg
     3721 taacgccacc aagggcgacg tgctgcaaca cggggcgcgc aattgctatc tgcgcagcga
     3781 aggcccgctg gtggcggcgg tgggcgtgga agacattgtc gtggtggcga cccaggatgc
     3841 cgtactggtc agccacagaa atgcctcgca ggacgtcaag cggattgtcg agcagctgga
     3901 acggtcaggc cgtgagctgc acaccaccca ccgcaaggtc tatcgccctt ggggctccta
     3961 tgaaggcatc gaccatggcg acaaattcca ggtcaagcac atcaccgtga gtcccggtgc
     4021 caagctgtcg ctgcagatgc atcacaa
//
LOCUS       DATMDK010000179         2879 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2598267,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000179 DATMDK010000000
VERSION     DATMDK010000179.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2879)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2879)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2879
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2598267"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2247)
                     /locus_tag="VNN98_03425"
     CDS             complement(<1..2247)
                     /locus_tag="VNN98_03425"
                     /inference="COORDINATES: protein motif:HMM:NF019259.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1592 domain-containing protein"
                     /protein_id="HWM61171.1"
                     /translation="MAASPATPADHKKMLMQYCTACHNDKLKTAGMSVVPLDANNLQA
                     DQATWEKILHRVSLGEMPLRGAPRPPKEKLQAFTQWLAKSLDDQAAANPNPGHATVRR
                     MNRTEYANAVRDLLDLKVDFSKDMPADDTGYGFDNIADVLTVSPTLMDRYITVAGRIS
                     RLATGQSSRKVITTDYKIPKDLFVNGFGVAAYNERASDDLPLDSRGGGAFKFYAPYDA
                     TYTIQVFLNANTSEEGEIDSRNRFEVKVPLKAGLRTIGASFPKQLALDEHVVPKSVLG
                     PRQPAAAPVPIPLDVQVDGARVQRLMVPSVATGPNVSQSFYLRDVMQISVVGPYDVKG
                     PGDTPSRRKIFICRPSAELPEAACADKILTTLARHAYRRPVTAADLAPLMKIYDEGRK
                     GTDFDHGIEAALEAVLVSPSFLFMRESDPAHSKPGDVHRISDVELAQRLSFFLWSSIP
                     DDALLAVAEQGRLHNPAVLKAQVARMLADPRAKALTENFAGQWLYLRRLEYQKPDRRA
                     FPDFDQRLRDAMQTETDMFFDGVVRENRSALDFLDANYTYLNQRLAEHYGVPGIYGTS
                     FRKVDLDPALHRGGLLGQGAILTVTSYNNRTSVVLRGKWILENLLAAAPPPPPPLVPS
                     LDDAKNGKKMTVREQMELHRKNPVCASCHTKMDPLGFSLENYDAVGAWRTGYAGSLVD
                     ASAVMPDGTKFDGPTGPTGLQGILLSRKDQFVEAMTERLMTYALARGVESYDMPAVRA
                     VRYQAAKDD"
     gene            2594..>2879
                     /locus_tag="VNN98_03430"
     CDS             2594..>2879
                     /locus_tag="VNN98_03430"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61172.1"
                     /translation="MERRTFLASLGAFAAASSARAQEAVTWSAPVIDMHFHMRRTAEL
                     NIAHQQGAGVTAANLLTRTDSAAAVVPLQAQHPAMFPCWFGGADVTKPDAE"
BASE COUNT          546 a          893 c          895 g          545 t
ORIGIN      
        1 atcgtctttt gccgcctgat agcgcacggc gcgtaccgcg ggcatgtcat aggattccac
       61 cccgcgcgcg agggcataag tcatcagccg ctcggtcatg gcttcgacga actggtcctt
      121 gcggctcagc agaatgccct gcaggccggt gggaccggtg gggccgtcga acttggtccc
      181 gtccggcatc acggcggagg cgtccaccag cgagccggca tagccggtgc gccaggcgcc
      241 gaccgcatcg taattctcca ggctgaagcc cagcggatcc atcttggtgt ggcaggaggc
      301 acagaccggg ttcttgcggt gcaattccat ctgctcgcga accgtcatct tcttgccgtt
      361 cttggcgtca tccagcgagg gcaccaaagg cggcggcggc ggcggcgctg cggccagcag
      421 attttccaga atccatttgc cgcgcagcac caccgaagtg cgattgttgt aggaggtcac
      481 ggtgagaatg gcgccctgcc ccaaaagtcc gccgcgatgc agcgccggat cgagatcgac
      541 cttgcggaag ctggtgccat agatgccggg aacgccgtaa tgctccgcca gccgctggtt
      601 gagataggtg taattggcat ccaggaaatc cagcgcgctg cggttttcgc gcaccacgcc
      661 atcaaagaac atgtccgttt ccgtctgcat cgcatcgcgc aggcgctgat cgaaatcggg
      721 gaaggcccgc cggtccggct tttgatattc cagccggcgc agatacagcc attggcccgc
      781 gaaattctcg gtcagggcct tggcgcgcgg atcggccagc atgcgcgcga cctgggcttt
      841 caggacggcg ggattgtgga gccggccctg ttcggccacc gccagcagcg cgtcatcggg
      901 aatgctgctc cacaggaaga aagacaggcg ttgggccagt tccacatcgc tgatccggtg
      961 cacgtcgccg ggcttgctgt gcgccggatc gctctcgcgc atgaacagga agctgggcga
     1021 aaccagaacc gcttccagcg cggcctcgat gccatgatcg aaatcggttc ccttgcggcc
     1081 ctcgtcataa atcttcatca gcggcgccaa gtccgccgcc gtcaccgggc ggcgataggc
     1141 atggcgcgcc agggtggtaa gaattttatc ggcgcaggcc gcctccggca gttccgcgga
     1201 aggccggcag atgaatatct tgcggcggct gggggtatcg ccgggcccct tcacatcata
     1261 gggaccgacc acggaaatct gcatcacatc gcgcagatag aaggactgcg aaacgttggg
     1321 gccggtcgca accgacggca ccatgagcct ctgcaccctt gcgccatcca cctggacatc
     1381 cagcggaatc ggcaccggcg ccgccgcagg ctggcgcgga cccaggacgg actttggcac
     1441 cacatgctcg tccagcgcca gttgcttggg gaaggatgcg ccgatggtgc gcagccccgc
     1501 cttcaacggc accttcacct cgaagcggtt acgggaatcg atttcccctt cttccgaggt
     1561 attggcattc aggaaaacct ggatcgtata ggtcgcgtca tagggcgcgt aaaatttgaa
     1621 agcgccgccg ccgcgcgaat ccaggggaag atcgtcgctg gcgcgctcgt tataggcggc
     1681 gacgccgaaa ccgttgacga acagatcctt gggaatcttg tagtcggtgg tgatgacctt
     1741 gcgcgatgac tgtcccgtcg ccaaccggct gatcctgccg gctacggtga tgtaacggtc
     1801 catcaaggtg ggcgagaccg tcagcacatc ggcgatattg tcgaagccat agccggtatc
     1861 gtccgccggc atgtccttgc tgaaatccac cttgagatcg agcaggtcgc gaaccgcatt
     1921 ggcatattcc gtacggttca tccgccgcac cgtggcatgg ccgggattgg gattcgcggc
     1981 ggcttggtcg tccagcgact tggccagcca ttgggtgaag gcttgaagtt tttcctttgg
     2041 cggccgtggc gcgccacgca acggcatttc gcccaagctc acgcggtgca ggattttttc
     2101 ccaggtggcc tgatcggctt gcagattgtt cgcgtccagc ggcaccaccg acatgcccgc
     2161 agtcttgagc ttgtcgttgt gacaggccgt gcaatattgc atcagcattt tcttgtggtc
     2221 cgccggtgtg gcgggggacg cggccatgtc accaacaggc gcgttcgacg ccagctgtgc
     2281 cagcggcggc tgagcggcag cgctgccaaa cagctcaaag ccaataacgc ctgcgagcgc
     2341 taacacgccg acggcaaatc cactacgccc gataaacggc gacatttacg cccatctcct
     2401 gcacctgaag gcgatttctc tgctcttcgc tgagtccagc cccgtcgcct cttatctccg
     2461 atcttagagg caaagtgaac tgcggattga aaaggaactt tattgcgtcc gcgaacgaaa
     2521 tattgcggcg cagcataacc tgtatcaatt cggccgataa gctagggtcg acgcgcgatc
     2581 gaaaggaagt tgcatggaga ggcgaacatt tctggcatcg ctgggcgcgt ttgccgcagc
     2641 ctcttccgcg cgggcgcaag aagcggtgac ctggagcgca ccggtgatcg acatgcattt
     2701 tcatatgcgc cggacagcgg aactgaacat cgcccatcag caaggtgcag gtgtgaccgc
     2761 tgccaacctg ttaacccgca ccgactccgc agcagccgtg gtgccgctgc aggcccaaca
     2821 ccccgccatg ttcccctgtt ggttcggcgg ggccgacgtc accaagcctg acgcggaag
//
LOCUS       DATMDK010000180         2274 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_81571,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000180 DATMDK010000000
VERSION     DATMDK010000180.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2274)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2274)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2274
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_81571"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..255
                     /locus_tag="VNN98_03435"
     CDS             <1..255
                     /locus_tag="VNN98_03435"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61173.1"
                     /translation="PEWALAFYDAVRAKDHAKVMAGLKQFVLPYIAIRNENKGYAVSI
                     VKAGMSAIGRSAGPVRPPLTELNADQAGRLKKLIEAAKPV"
     gene            327..1265
                     /locus_tag="VNN98_03440"
     CDS             327..1265
                     /locus_tag="VNN98_03440"
                     /inference="COORDINATES: protein motif:HMM:NF015431.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR substrate-binding domain-containing
                     protein"
                     /protein_id="HWM61174.1"
                     /translation="MAGASFWSQFELRQLRCFVAAAEELHFGRAAARMNMTQPPLSRQ
                     IQLLEHVLGVKLLDRTSRAVKLTPAGRVFLLEARRILRLTESAALATRRIASGEAGTI
                     ALGFTAATGYSFLPRLLLQRASHAPNIDVALKEMVSTEQVEGLLTGRIDVGLLRPPIA
                     RSEFTTLKVAEERLVAALPVGDPRLSEASLTLKHFDRQPLIMYAADGARYFHDMLAGL
                     FEAEGSAPITIQSLSQIHSMLALVRAGIGPALVPEAAMSLHFDDVHFRAVQTEPVAPV
                     ELFAAWRSENDNPALAGFLDLLRPESGHDGLAAHIE"
     gene            1465..>2274
                     /locus_tag="VNN98_03445"
     CDS             1465..>2274
                     /locus_tag="VNN98_03445"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HWM61175.1"
                     /translation="MTTADTRNSHIRFWIIAVLFIVSSINYASRATLSFAAVPLSKEI
                     HISTVQLGYIFSAFGWSYVIGQIPGGALLDKYGSRPIYLWSITLWAVFTMAQAFVSSL
                     SYIPVFISLFALRFALGFAECPSFPANARIVANWFPNSERGTASAIFNSSQYFSLVAF
                     APLMGWLAQSYGWRSVFLVMGGIGFLGAALFWAVVQSPSRHKKISKREYDYIETGGAL
                     VNLDRPAAAAQQIRWGIIGQLLANRMLLGIYLAQYCITALTYFYATWFPIYL"
BASE COUNT          366 a          746 c          685 g          477 t
ORIGIN      
        1 ccggaatggg cgctggcttt ctatgacgcg gtgcgcgcca aggatcacgc caaggtgatg
       61 gccgggctga agcaattcgt gctgccctat atcgccattc gcaacgagaa caagggttat
      121 gccgtctcca tcgtcaaggc gggcatgagt gccatcggcc gctccgccgg gccggtgcgc
      181 ccgcccctga ccgaactgaa tgccgaccag gccggccggc tgaaaaagct gatcgaggcg
      241 gccaagcctg tttaagagcc cggtctaacg cccacggtta acagcccagg tttaatatgc
      301 ggacttttcc cgctataggg tgcgtcatgg cgggcgcatc cttctggtcg caattcgaac
      361 ttcggcagct tcgctgtttt gtcgccgccg ccgaggaact gcatttcggc cgcgccgcgg
      421 cgcgcatgaa catgacccag ccgcctttgt cgcggcagat tcagctgctc gaacatgtgc
      481 tgggggtcaa gctgctggac cgcaccagcc gcgccgtcaa gctgaccccg gcggggcgcg
      541 tatttctgct ggaagcgcgc cgcattctgc gcctgaccga aagcgcggcg ctggccaccc
      601 gccgcatcgc cagcggcgag gccggcacca tcgccttggg cttcaccgcc gccaccggct
      661 acagcttcct gccgcgcctg ctgttgcagc gcgccagcca tgcccccaac atcgatgtgg
      721 cgctgaagga gatggtctcg accgaacagg tggaaggcct gctcaccggg cgcatcgatg
      781 tcggactgtt gcgcccgccc attgcccgca gcgagttcac cactttgaaa gtcgccgaag
      841 aacggctggt ggcggcgctg ccggtgggcg atccgcgcct gtccgaagcc agtttgacct
      901 tgaaacattt cgaccgccag cccttgatca tgtatgcggc ggacggggcg cgctatttcc
      961 atgacatgct ggccggcctg ttcgaggcgg aaggttcagc ccccattacc atccagtcgc
     1021 tcagccagat tcattccatg ctggccctgg tgcgcgccgg catcggcccc gcgctggtgc
     1081 ccgaagccgc catgtcgctg catttcgacg atgtgcattt ccgcgccgtg cagaccgaac
     1141 ccgtcgcgcc ggtcgagctg ttcgccgcct ggcgcagcga gaatgacaat ccggcgctgg
     1201 cggggtttct cgacctgctg cggccggaat ccggtcacga cggccttgca gcacatatag
     1261 aatgacccct ccgcccttcg ctggctcgag agccagctac gggcacctcc ccttaatttg
     1321 cgctacgcgc aagaagggga ggtggattga tgcgtttggc gcattgatcg cttgaacctt
     1381 tggcttggac gggccaatct tccggcgcct aatttggcca ataaggccct tagcggccat
     1441 ctcttttcgg ggacaggact catcatgacg accgccgata cgcgcaacag tcatatccgc
     1501 ttctggatca tcgcggtgct gttcatcgtt tcttcgatca actatgccag ccgcgccacc
     1561 ctgtccttcg ccgcggtgcc gctgtccaag gagattcaca tctccacggt gcagctgggc
     1621 tacatcttct cggccttcgg ctggtcctat gtcatcgggc agatccctgg cggcgcgttg
     1681 ctggacaaat atggttcgcg cccgatctac ctgtggtcga tcaccttgtg ggcggtgttc
     1741 accatggcgc aggccttcgt gtcgtcgctg tcctacattc ccgtcttcat cagcctcttc
     1801 gccctgcgct tcgccctggg ttttgccgag tgccccagct tcccggccaa tgcgcgcatc
     1861 gtcgccaact ggtttcccaa ttccgagcgc ggcaccgcca gcgccatctt caattcctcg
     1921 caatatttct cgctggtagc ttttgcgccg ctgatgggct ggctggcgca gagttatggc
     1981 tggcgcagcg ttttcctggt gatgggcggc ataggctttt tgggcgcggc gctgttctgg
     2041 gcggtggtgc aatcgccatc gcgccacaag aagatcagca agcgcgaata tgattatatc
     2101 gagacgggcg gcgcgctggt gaacctggac cggccggcgg cggcggcgca gcagatccgc
     2161 tggggcatca tcggccagct gctggccaac cgcatgctgc tgggcatcta tctggcgcag
     2221 tattgcatca ctgcgctgac ctatttctac gccacctggt ttccaatcta cctt
//
LOCUS       DATMDK010000181         4133 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1691849,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000181 DATMDK010000000
VERSION     DATMDK010000181.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 4133)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4133)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4133
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1691849"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1132
                     /locus_tag="VNN98_03450"
     CDS             <1..1132
                     /locus_tag="VNN98_03450"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="HAMP domain-containing sensor histidine kinase"
                     /protein_id="HWM61176.1"
                     /translation="VYSGLYYQIRVGKSGGQISRSLFDKEINPVDETRKGALMWGSAA
                     GPENQRLRVMSRQVDLTPDNSSDANYTFLVAGDMAQVDRQTGEFNETLFWSFLLLGLG
                     LIAAILVQVKVGLLPLRKVSKALAKIRDGEARRLDGNFPTEIAPLATELNSLIQHSEE
                     VVGRARTHVSNLAHFLKTPLSVLAAEADAYEKDSGAGPLADMVKRQVFSMRRQVDHYL
                     SRARAAGSLDVLGNRTQVSSVMDDLARVIARIHASRGVVIDAECDDGIYFRGERQDLE
                     EMLGNLVDNGCKWARARVRVRCHKAGGRLTLTVEDDGPGLSAQQRTQVGERGERLDES
                     VPGTGLGLAIVRDISKLYGGFFALDESSLGGVLARLELPAIL"
     gene            1198..2562
                     /locus_tag="VNN98_03455"
     CDS             1198..2562
                     /locus_tag="VNN98_03455"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61177.1"
                     /translation="MSPQERTGLLKAFLGGLPGVAAGRLAMAVEVDRLMDGRALPHED
                     ILAGLRPVLRRDHNDRTPTPLRLFCHPFQDLLTCQPRTAKQKASITRSTLTPAWNWLS
                     QTLLPTETAAYARECKALVLNLKHEEALARAARFWPLAANAMTQALATDSQAVKKILG
                     DPFAVDDIAEMALLLSAGEAVEQLSALLPAPVASFHEQLVWQVRDIYERLVQEQPDVA
                     PYVAVIVMNRLVRPWEALRLPLLVTRHTDDTLIAKTDMGLVGEILFARMDALKSSIQI
                     TRHPLFDADRLMEEVKTFADLSSHIVKEIEIKREGEWGKRLLAERVLIGKVMEGFMDR
                     APREFVAALPSQKATGGDFSKHVAPEKQEMALRYARLVAGSRFFAAAASFAAKQKMVY
                     EDLCAILKRYNEDLIKALKANPQNPVANAQFLLCAELTAVLYSDEEAELLRRRGRAAL
                     SAAA"
     gene            2718..3479
                     /locus_tag="VNN98_03460"
     CDS             2718..3479
                     /locus_tag="VNN98_03460"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61178.1"
                     /translation="MFRTPLITALTVALLGGTAMAQPANAPPSNLSNSARSAPDYDDE
                     DASPAPRPSDRGTPDGPPPQDNRGAYSDSQRNAGAQAQQADRDMFCRRDAAARTGYTT
                     PREAARDEQTRGTIGGTLGGAALGAIIGAGAGNAGLGAAAGAGAGLIAGTAIGADNAR
                     HAARDVEANYADAYYACMHEDGGRQEYRQSAYDGPPPGYGYGPPPPGYYYPPPYGYPY
                     YPYYYGPSVSFGFGFGGGHGWGGGHRGFGGGGHHR"
     gene            3552..3896
                     /locus_tag="VNN98_03465"
     CDS             3552..3896
                     /locus_tag="VNN98_03465"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61179.1"
                     /translation="MPPKANPAKLNPLQLRTLTLLQAIARIPGAASATPEGDTAITQF
                     PHAHGDHFHLGDATVRASDATGLENENVWNALSRKGLVKCEWPSQIALTPEGLGYDTG
                     IADQILHAGSGH"
BASE COUNT          741 a         1289 c         1361 g          742 t
ORIGIN      
        1 cgtctattcc ggtctgtatt accagatcag ggtgggcaag agcggcgggc agatttcgcg
       61 ctcgctgttc gacaaggaga tcaatccggt cgacgaaacc aggaaaggcg cgctgatgtg
      121 gggcagcgcg gcggggccgg agaatcagcg gttgcgcgtg atgtcgcggc aggtggacct
      181 gacgccggac aatagcagcg atgccaatta taccttcctg gtggcgggcg acatggcgca
      241 ggtcgatcgc cagaccgggg aattcaatga gaccctgttc tggtcattct tgttgctggg
      301 gctgggattg atcgccgcta tcctggtgca agtgaaggtc ggcctgctgc cgctgcgcaa
      361 ggtcagcaag gcgctggcaa aaatccgcga cggcgaggcg cggcggctgg acgggaattt
      421 ccccaccgag atcgcgccgc tggcaacgga gctcaattcc ctgatccagc acagcgagga
      481 agtggtgggc cgcgcccgca cccatgtttc caacctggcg cattttctca agacgccgct
      541 ttcggtgctg gccgccgagg ccgatgcgta tgaaaaagat tcgggggccg gcccgttggc
      601 cgacatggtc aagcgccagg tcttttccat gcgccgccag gtggatcatt atctctccag
      661 agcccgcgcc gccggttcgc tggatgtgct gggcaaccgc acccaggttt ccagcgtgat
      721 ggacgatctg gcccgcgtca ttgcccgcat ccatgcgtca cgcggcgtgg tgatcgatgc
      781 ggaatgcgat gacggcatct atttccgcgg cgagcgccag gacctggaag agatgctggg
      841 caacctggtg gacaatggct gcaaatgggc gcgggcccgg gtacgggtgc gctgtcacaa
      901 ggcgggcgga cggctgaccc tgacggtgga agacgacggg ccaggcctgt cggcccagca
      961 gcggacccag gtgggcgagc gcggcgaaag gctggacgaa agcgttcccg gcaccggtct
     1021 gggactggcc attgtgcggg atatctccaa gctttacggg ggttttttcg cactggatga
     1081 aagttccctt ggcggggtgc tggcgcgcct ggaacttccc gcaattcttt aaaagaaaca
     1141 gggtgttaag gatattaccc ctaatgtagg cagacgcagc tggagggctg tgaatccatg
     1201 tcgccgcaag aacgaacagg attgctcaag gcgtttctcg gtggcctgcc cggtgtggcc
     1261 gccgggcgtc ttgccatggc cgtggaagtg gaccggctga tggacggccg cgccttgccg
     1321 catgaagaca ttctcgcggg ccttcgcccc gtcctgcgcc gcgatcataa tgatcgtact
     1381 ccgacgccgc tgcgtctgtt ctgccacccg ttccaggact tgctcacctg ccagccgcgc
     1441 acggccaagc agaaggcctc catcacgcgc agcacattga cgccggcttg gaactggctt
     1501 tcccagacct tgctgccgac agagactgct gcctatgccc gcgaatgcaa ggcgctggtg
     1561 ctgaatctca agcacgaaga ggccctggcg cgcgccgccc ggttctggcc cctggctgcc
     1621 aatgccatga cccaggcgct ggccaccgac agccaggcgg tgaagaaaat cctgggcgat
     1681 cctttcgcgg tggacgacat tgccgagatg gcgctgctgc tgtcggctgg cgaagcggtc
     1741 gaacagctca gtgccctgct gcccgctccg gtggcgtcct tccatgaaca gctggtctgg
     1801 caggtgcgcg atatctatga gcggctggtc caggagcagc ccgatgtcgc gccctatgtc
     1861 gcggtgatcg tgatgaaccg cctggtccgg ccgtgggagg cgttgcgtct acccttgctg
     1921 gtgacccgcc ataccgacga cacgctgatc gccaagaccg acatggggct ggtgggcgag
     1981 atcctgtttg cgcgcatgga cgcgctgaag agttccatcc agatcacccg ccaccctttg
     2041 ttcgacgccg acaggttgat ggaggaggtc aagacctttg ccgatctgtc cagccatatc
     2101 gtcaaggaaa tcgagatcaa gcgcgaaggc gaatggggca aacgcctgct ggccgagcgg
     2161 gtgttgatcg gcaaggtgat ggaaggcttc atggaccgcg cgccgcggga gttcgttgcc
     2221 gcgctgccga gccaaaaggc gaccggcggg gacttcagca agcatgtcgc tccggaaaag
     2281 caggagatgg cgctgcgcta tgcgcggctg gtggcgggca gccggttctt cgccgccgcc
     2341 gcctccttcg ccgccaagca gaagatggtc tatgaagacc tttgcgccat cctcaagcgt
     2401 tacaacgagg atttgatcaa ggcgctgaag gcgaacccgc aaaaccccgt cgccaatgcc
     2461 cagttcctgc tttgcgcgga actgacggcc gtcctgtaca gcgatgaaga ggcggaattg
     2521 ctgcgccggc gtgggcgtgc agcactgtca gcggctgctt agtgcttaca ggcacttagc
     2581 gtttcaaacc ctacctgaac gccggatgaa cggcggcatt gccgcctgtg aaaatacttt
     2641 atcttgtctt tgacattgaa ccggtagagg ggtctcctac gtatctggcg agaggggcca
     2701 gtcctggaga cgttccgatg ttccgcacac cacttatcac cgccttgacg gtcgccctgc
     2761 tgggtggaac cgcgatggca caaccggcca atgcgccgcc cagcaacctg tccaatagcg
     2821 cacgcagcgc gccggactat gacgacgaag acgcttctcc ggctcctcgt ccttcggacc
     2881 gcggcacccc ggatggtccg ccgccgcaag ataatcgggg cgcctattcc gactcccaga
     2941 gaaacgcagg cgcgcaggcg cagcaggctg accgcgacat gttctgccgt cgcgacgccg
     3001 cggcccgcac cggctacacc accccgcgcg aagcggcgcg ggacgagcag acgcgcggca
     3061 ccatcggcgg caccctgggc ggcgccgcgc ttggcgccat catcggcgcg ggcgcgggca
     3121 atgccggctt gggcgccgcg gccggcgcag gcgcgggctt gatcgccggc accgccatcg
     3181 gcgccgacaa tgcccgccat gcggcgcgcg atgtcgaggc taactatgcc gacgcctatt
     3241 atgcctgcat gcacgaagat ggaggccgcc aggaatatcg tcagtccgct tatgacgggc
     3301 cgccgccggg atacggctac ggcccgccgc ccccgggtta ttattatccg ccgccttacg
     3361 gctatcccta ttacccctac tattacggcc ccagcgtgtc gttcggcttc ggtttcggcg
     3421 gcggccatgg ctggggtggc ggtcatcgcg gatttggcgg tggtgggcat caccgctaag
     3481 tcagcttgcg cttttgctta gaagcggccg ggacggtatg gtcccggccg tttttctttg
     3541 ccggacccgt gatgccgccg aaagccaatc ccgccaagct caacccgctg cagctgcgca
     3601 ccctgaccct gttgcaggct atcgcgcgga ttcccggcgc ggccagcgcc acaccggagg
     3661 gcgacaccgc cattacccag ttcccccacg cccatggcga tcatttccat ctgggcgatg
     3721 cgacggtgcg ggccagtgac gccaccggcc tggagaatga gaatgtgtgg aacgcgctca
     3781 gccgcaaggg gctggtcaag tgcgaatggc cgagccagat cgccctgacc cccgaaggct
     3841 tgggttatga cacgggcatc gccgaccaga ttctgcacgc aggcagcggt cactagagtg
     3901 tgctggattg gaaggaaccc ttacactctc catgggcggg cttgacccgc ccatccgggg
     3961 caaccaatac cgtggtctgc ggccctggat ggcgcgcata cgctggcgct atgcgccgga
     4021 ggccggccat ggcgaagatg agtgaggcaa cgtgcattat gtccgaaacg gtcactagat
     4081 gaatgccaag aagaagcgcc gcctggcttt tgccgccgcc ctggtggcgg tgg
//
LOCUS       DATMDK010000182         4312 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2136259,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000182 DATMDK010000000
VERSION     DATMDK010000182.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 4312)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4312)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4312
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2136259"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1606
                     /locus_tag="VNN98_03470"
     CDS             <1..1606
                     /locus_tag="VNN98_03470"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HWM61180.1"
                     /translation="NNQNLQHMYASEDAVLTPSGTVACYAATQAATAAAYAGCVPINL
                     FGTGSVSQSAFKYDFQETNFHETNTLNNMGGSISGKVLDDWAGPITAALSGEARFNAY
                     DISSNVPSSTFVDCTGLRICNPALPSYAQAIIQGVHASQNVWEFALETEVPLIKDVPL
                     IKNFDLNMAGRYTDYSVSGSVQTWKIGFNWNVVDSLRFRGTTSIDIRAPTLNDLFQPA
                     TLLQNVFNGDLHIPDLTKSQVPNPQYVSYTTTFSSQGNPNLVPEVARTYTVGAVWTPD
                     FIPGLTMSLDYYRIHMANAIGSIAPSNTIQNLCEASGGTSIYCANYQRPLPFSDHTIA
                     NETTRLFTFNLNTASTKTEGWDFETNYAWAMSDLVDGWNGSWNARLLGTYEPIINKSV
                     LIPGQPFTRSTDSSTRATLFLNYTLNDWSVGLQDTWVSGFSLVAGPILPAGSAQASAG
                     LNNWVNPHVNSWNQVDLNVSRNFQMEGADMTGYVVVQNFLNAQPAYVPNGTIGQIYPT
                     AQTGLSGYSVQSPMGRYFTIGLKANL"
     gene            1713..2126
                     /locus_tag="VNN98_03475"
     CDS             1713..2126
                     /locus_tag="VNN98_03475"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61181.1"
                     /translation="MLREQIQTASALLYRHWSQETRLDALPPDLRPADRAEAYRVQAC
                     IEVFSQAPLYGWKIAATSLAGQRHIGVDGPLAGRLLTERIIEDGGACRLGNNLMKVAE
                     LEFAFRMGDDLAPRGPMSAAPSPPAATDLHRRHRR"
     gene            2164..2316
                     /locus_tag="VNN98_03480"
     CDS             2164..2316
                     /locus_tag="VNN98_03480"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61182.1"
                     /translation="MWTFLLPASLYGTPLTYQGRHGKQYVAVVTTGGFWGEAAGADEV
                     TAFALQ"
     gene            2373..4271
                     /locus_tag="VNN98_03485"
     CDS             2373..4271
                     /locus_tag="VNN98_03485"
                     /inference="COORDINATES: protein motif:HMM:NF024753.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-binding-like beta-propeller repeat protein"
                     /protein_id="HWM61183.1"
                     /translation="MPHFRICTMTIGLLAGAALAGNLAQGAPKTGSATDWPNYGGDRG
                     AMRYSPLTQITPANVTSLKVAWTYHMKPADATRIATSETTPLVVGNVMYLGSPYGRIV
                     ALDATTGKELWVYKMAGNTRPAPRGMAYWPGEGKYAPELLFGANDGTMLAVNVKTGKL
                     AEAFGDHGVVNLKTPEIMRGYDKHYALTSPPGIYKNLVMTGADGPEESRSVSGDERAW
                     DVRTGKLVWTFHSVPREGEFGNDTWPKDGWQNRAGVNIWNMITVDDKRGIAFLPFTGP
                     GPDRWGGDRHGANLFGNALVAVDANTGRRLWHFQLLHHEVWDWDQPTPPMLFDVKKDG
                     PKGKETIPAVAAMNKSGYLFILDRLTGKPLYDVKEVPVPKSTVTDEETWPTQPVPVTP
                     PPLAKQSFTAATDVTNITPELESFCKNLIKTNKLHDSVPFSPLTMDSQIARFPGSGGG
                     PEWGGGAFDPHLGYFIVNTQELGSIEQLEKKKDGYWGSTTGPDSFFEQEIAGHGYYPC
                     QNPPWGDLWAVNVNTGKVAWRVNLGVSDIMPEGKQNTGRPNLGAPLTTASGLIFIGAT
                     DDSRFRAFETKSGKELWTYKLDASAHASPVTYRGTDDKQYVAVVATGGAFVHSPAVGD
                     SLVVFGLP"
BASE COUNT          851 a         1381 c         1327 g          753 t
ORIGIN      
        1 caacaaccag aacctgcagc acatgtatgc gtcggaagac gcggtgctga cgcccagcgg
       61 caccgtggcc tgctatgccg cgacccaggc ggcgacggca gccgcctatg ccggctgcgt
      121 gccgatcaat ctcttcggca ccggttccgt cagccagtcg gctttcaaat atgacttcca
      181 ggagacgaat ttccacgaga ccaacaccct gaacaacatg ggcggcagca tctcaggcaa
      241 ggtgctggat gactgggcgg gtccgatcac cgcggctctg tccggtgaag cgcgcttcaa
      301 cgcctatgac atcagctcca atgtgcccag cagcaccttt gtggattgca cgggcctgcg
      361 tatctgcaac ccggcgctgc ccagctatgc ccaggcgatc attcaggggg tccatgccag
      421 ccagaatgtg tgggaattcg cgctggaaac cgaagtgccg ctgatcaagg atgttccgct
      481 gatcaagaac ttcgacctca atatggccgg ccgctacaca gactattcgg tgtcgggttc
      541 ggtccagacc tggaagatcg gcttcaactg gaatgtcgtc gacagcttgc gcttccgcgg
      601 caccacctcg atcgacatcc gcgcgcccac gctgaacgat ctgttccagc cggcaacgct
      661 attgcaaaac gtcttcaacg gcgatctgca cattccggac ctgaccaaat cgcaagtccc
      721 caacccccag tatgtgagct acacgaccac cttcagcagc cagggcaatc ccaatctggt
      781 gccggaagtg gcgcgtacct atacggtggg cgcggtatgg acgccggact tcatcccggg
      841 cctgaccatg tcgctggact attatcgcat ccatatggcc aacgcgatcg ggtccatcgc
      901 gcccagcaac actatccaga acctgtgcga ggcgtcgggt ggcacctcga tctattgcgc
      961 gaattatcaa cgtccgttgc cgttcagcga tcacacgatc gcgaacgaga cgaccaggct
     1021 ctttaccttc aacctgaata ccgcttcgac caagaccgaa ggctgggact tcgagaccaa
     1081 ctatgcctgg gcgatgtccg acctggtgga cggctggaac ggttcctgga atgcgcgcct
     1141 gttggggacc tatgagccga tcatcaacaa gtcggtgctt atcccgggcc agcctttcac
     1201 acgctctacc gattccagca cccgcgccac ccttttcctg aactacaccc tgaacgactg
     1261 gagcgtgggt ctgcaggata cctgggtttc gggcttcagc ctggtggcgg gtccgatcct
     1321 gccggcaggt tccgctcagg cgtcggcggg cctcaacaac tgggtcaatc cgcacgtgaa
     1381 ctcctggaac caggtggacc tgaatgtctc gcgcaacttc cagatggagg gcgccgatat
     1441 gacgggttat gtcgtggtcc agaacttcct caatgcccag ccggcctatg tgcccaacgg
     1501 gaccatcggt cagatctatc cgaccgccca aaccggtctc agcggttaca gcgtccaaag
     1561 cccgatgggg cgttacttca cgattggcct caaagccaat ctgtgatgcc tgcggccggc
     1621 tttcgatccc cctggtcgag gccggccgtt tcttcctctt aagcgcgcct tctgtggctg
     1681 cgcctgcggg gcgtttgtgc taatcccgtc ccatgctgcg ggaacagatc cagacggcca
     1741 gcgcgctgct ttaccggcat tggtcgcagg aaacgcggct tgacgcgctg ccgccggact
     1801 tgcggcccgc cgaccgtgcc gaagcttacc gcgtccaggc ctgcatcgag gttttcagcc
     1861 aggcgccgct ttatggctgg aagatcgcgg cgaccagcct ggcgggacag cggcatatcg
     1921 gggtggatgg cccgctggcc ggacggctgc tgaccgaacg gattatcgaa gacggcggcg
     1981 cctgccggtt gggcaacaat ctgatgaagg ttgcggaact ggaattcgcc ttccgcatgg
     2041 gagacgatct ggcgccgcgc ggcccaatgt cggcggcccc atcgccaccg gcggcgactg
     2101 atcttcatcg gcggcaccga cgataagcag ctcagggcct ttgacaccaa aaccggcaag
     2161 gaggtgtgga cattcctgct gcctgcctcg ctctacggca cgccgctgac ttatcagggc
     2221 aggcacggca agcagtatgt cgcggtcgta accacgggcg gcttctgggg cgaggcggcg
     2281 ggcgccgacg aggtgacggc cttcgccttg caataggcag gctggcctgc aaatctgcct
     2341 caaaagggcc aagggccaat ttggggagca gcatgccgca tttccgcatt tgcacgatga
     2401 ccattggcct gctggcaggc gccgccctgg ccggcaatct ggcccagggc gcaccaaaga
     2461 ccggatcggc gaccgattgg cccaattacg gcggtgaccg tggcgccatg cgctattcgc
     2521 cgctgaccca gatcacgccc gccaatgtca cctcgctgaa ggtggcctgg acctatcaca
     2581 tgaaaccggc agacgcgacg cgcattgcga catccgagac cacgccgctg gtggtgggca
     2641 atgtgatgta tctgggctcg ccctatggcc gcatcgtggc gctggacgcc accaccggca
     2701 aggaattgtg ggtctacaag atggcgggca acacgcgccc cgccccgcgc ggcatggcat
     2761 attggccggg cgaggggaaa tatgcgcccg aactgctgtt cggcgccaat gacggcacga
     2821 tgctggcggt caacgtcaag accggcaagc tggccgaggc gttcggcgat cacggcgtgg
     2881 tcaacctgaa gacaccggag atcatgcgcg gctatgacaa gcattacgcc ctgacctcgc
     2941 cgccggggat ttataagaac ctggtcatga ccggcgccga cggacctgag gaatcgcgca
     3001 gcgtctcagg cgacgagcgt gcctgggacg tgcgcaccgg caagctggtc tggaccttcc
     3061 attccgtgcc gcgcgaaggc gaattcggca acgatacctg gcccaaggat ggctggcaga
     3121 accgcgccgg cgtgaacatc tggaacatga tcaccgtgga cgacaagcgc ggcatcgcct
     3181 tcctgccctt caccgggccg gggccggacc gctggggcgg cgaccgccac ggcgccaatc
     3241 tgttcggtaa tgcgctggtg gcggtggacg ccaataccgg caggcggctg tggcacttcc
     3301 agcttctgca tcacgaagta tgggactggg atcagcccac gccgcccatg ctgttcgacg
     3361 tgaagaagga cggcccaaaa ggaaaagaga ccattcccgc tgtggcggcg atgaacaagt
     3421 cgggctacct cttcatcctc gaccgcctca ccggcaaacc gctatatgac gtcaaggaag
     3481 tgccggtgcc caagagcacc gtcaccgacg aggaaacctg gcccacccag ccggtgccgg
     3541 tgaccccgcc gccactggcg aagcagagtt tcacggccgc caccgatgtg accaacatca
     3601 cgccggagct ggaaagtttc tgcaagaacc tgatcaaaac caacaaactg catgacagcg
     3661 tgcccttctc gccgctcacc atggattcgc agatcgcgcg ttttcccggc agcggcggcg
     3721 ggccggaatg gggcggcggc gccttcgatc cccacctcgg ctatttcatc gtcaataccc
     3781 aggagctggg ctcgatcgag cagctggaaa agaagaagga cggctattgg ggttcgacca
     3841 ccggcccgga cagcttcttc gagcaggaga tagcgggcca tggctattac ccgtgccaga
     3901 acccgccatg gggcgatctg tgggcggtga acgtcaacac cggcaaggtc gcctggcgcg
     3961 tcaatcttgg cgtgagcgac atcatgccgg aaggaaagca gaataccggc cgccccaacc
     4021 tgggtgcccc gctgacgacg gcgagcggcc tgatcttcat cggcgccacc gacgacagcc
     4081 gcttccgcgc gtttgagacc aagagcggca aggagctgtg gacttacaag ctggacgcct
     4141 cggcccatgc ctcgccggtg acctatcggg gcaccgacga caagcaatat gtcgccgtgg
     4201 tggcaaccgg cggggcgttc gtgcacagcc cggcggtcgg cgacagcctg gtagtgttcg
     4261 ggctgccata ggcctagcgc caggcaaaat aaagggcgcg gccttttgtg cg
//
LOCUS       DATMDK010000183         3017 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_329783,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000183 DATMDK010000000
VERSION     DATMDK010000183.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3017)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3017)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3017
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_329783"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            92..652
                     /gene="grpE"
                     /locus_tag="VNN98_03490"
     CDS             92..652
                     /gene="grpE"
                     /locus_tag="VNN98_03490"
                     /inference="COORDINATES: protein motif:HMM:NF010739.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000774 - adenyl-nucleotide exchange
                     factor activity [Evidence IEA];
                     GO_function: GO:0042803 - protein homodimerization
                     activity [Evidence IEA];
                     GO_function: GO:0051087 - protein-folding chaperone
                     binding [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide exchange factor GrpE"
                     /protein_id="HWM61184.1"
                     /translation="MNEEPTQLPDSENPHAAEFAVLEALKAEVASLKDQRLRALAEVE
                     NIRRRADREKTEASQYAVTRFARDMLGIADSFASALAAVPAAVRDAADPQVRAVLDGV
                     EATDRQLIQTLERYGVKSVDTSDGKFDPNLHQAIAEVPASGKPPGSIVDVVQTGFMIG
                     ERLLRPSMVTVAKKDAPATGNVDAKV"
     gene            663..1469
                     /gene="dapB"
                     /locus_tag="VNN98_03495"
     CDS             663..1469
                     /gene="dapB"
                     /locus_tag="VNN98_03495"
                     /EC_number="1.17.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020044610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008839 - 4-hydroxy-tetrahydrodipicolinate
                     reductase [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate reductase"
                     /protein_id="HWM61185.1"
                     /translation="MAELNIVVTGASGRMGRTLIREIAQGSGITLCGALEMEGHPNLG
                     LDSGTLAGMQPNGIKLTADPLPLLAQAQAVVDFTTPMVSMMLADLAAQARIVHVIGTT
                     GFDDKGEARIAAAARHAVIVKSGNMSMGVNLLAALAERAARSLPDYDIEVLEMHHRNK
                     VDAPSGTALLLGQAAAKGRDIALEKHWVKARDSHNLGPRADGSIGFATLRGGSVVGEH
                     SVIFAGTGERITLSHSAEDRSIFAHGALTAARWGHGKKPGLYAMKDVLGL"
     gene            1466..2179
                     /gene="nth"
                     /locus_tag="VNN98_03500"
     CDS             1466..2179
                     /gene="nth"
                     /locus_tag="VNN98_03500"
                     /inference="COORDINATES: protein motif:HMM:TIGR01083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003906 - DNA-(apurinic or apyrimidinic
                     site) endonuclease activity [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease III"
                     /protein_id="HWM61186.1"
                     /translation="MKKFSPAQAEEFFARLKKLDPEPKTELHYVNPYTLLVAVALSAQ
                     ATDKGVNKATAPLFKTVTTPQQMVALGEAKLAEAIKTIGLYRGKAKNVIALSKILLEQ
                     HGGQVPKSREALEALPGVGRKTANVVLNVAFGEPTIAVDTHIFRVSNRTGLAPGKNVL
                     EVELGLEKIVPDHYKSHAHHWLILHGRYTCVARKPLCPTCVVRDLCQFKEKTRELPPM
                     KAKAPIPKKSVRGRAQGKK"
     gene            complement(2431..2799)
                     /locus_tag="VNN98_03505"
     CDS             complement(2431..2799)
                     /locus_tag="VNN98_03505"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61187.1"
                     /translation="MIRRMPCLIFALLAVGCAAKAPLPPAPPSIAAIPPAPPRGEPGQ
                     YLNMPATGLQAAFGRPAFVRKDGATEMWRYDGEACRAFFFLYGAPLAVRHVETLPHGV
                     QSAADSACLTALRASPAKTS"
BASE COUNT          599 a          934 c          985 g          499 t
ORIGIN      
        1 ggccgcatca tccccatggt ggaccatacc gccaaagtca ttggacgatt gctcgcttaa
       61 ggtttaagga cgcgccccaa ggaagaatga catgaacgaa gaaccgaccc agctgcccga
      121 ctccgagaac ccgcacgccg ccgaattcgc cgtgctggag gccctgaagg ccgaggttgc
      181 ctcccttaag gaccagcgcc tgcgcgccct ggcggaggtg gagaatatcc gccgccgcgc
      241 cgaccgggag aagaccgagg ccagccaata tgcggtgacc cggttcgccc gcgacatgct
      301 gggcatcgcc gacagtttcg ccagcgccct ggccgccgtg ccggccgccg ttcgcgacgc
      361 tgccgatccg caagtccggg cggtgctgga cggggtggaa gccaccgacc gccagctgat
      421 ccagaccctg gagcgctatg gcgtaaagtc ggtggatacc agcgacggca agttcgatcc
      481 caacctgcac caggcgatcg ccgaagtgcc ggcgtccggc aagccgccgg gttcgatcgt
      541 ggacgtggtg cagaccggct tcatgatcgg cgagcggttg ctgcgtccgt ccatggtgac
      601 cgtggccaag aaagatgcgc ccgccaccgg caatgtagac gccaaagtct gaggggagcc
      661 tgatggccga actgaacatc gtcgtcacgg gcgcgtccgg gcgcatgggc cgcaccctga
      721 tccgcgagat cgcgcaaggc tcgggcatca ccttgtgcgg cgcgctggaa atggaaggcc
      781 atcccaatct ggggctggac agcggcaccc tggccggcat gcagcccaat ggcatcaagc
      841 tgaccgccga tcccttgccg ctgctggcgc aggcccaggc ggtggtggat ttcaccacgc
      901 ccatggtgtc catgatgctg gccgacctgg cggcgcaggc gcgcatcgtc catgtcatcg
      961 gcaccaccgg ctttgacgat aagggcgagg cgcggatcgc ggccgccgct cgtcatgccg
     1021 tgattgtgaa atccggcaat atgagcatgg gggtcaatct gctggcggcg ctggcggagc
     1081 gcgccgcccg ctcgctgccc gactacgaca tcgaagttct ggaaatgcat catcgcaaca
     1141 aggtggatgc gccgtccggt accgccttgc tgctgggcca agcggcagcc aagggccgcg
     1201 atattgcgct ggagaagcat tgggtcaagg cgcgcgacag ccacaatctg ggtccgcgcg
     1261 ccgatggcag catcggcttc gccaccctgc gcggcggcag cgtggtgggc gagcattcgg
     1321 tgatcttcgc cgggaccggc gagcgcatca cactgtctca ttccgccgag gaccgctcca
     1381 tcttcgcgca tggcgcgctg accgcggcgc gctggggaca tggcaagaag cccggccttt
     1441 atgcgatgaa ggatgttctg ggactgtgaa gaagttcagc cccgcgcaag ccgaggagtt
     1501 tttcgcgcgg ctgaagaaac tcgatcccga gcccaagacc gaactgcact acgtcaatcc
     1561 ctataccttg ctggtggcgg tggcgctgtc ggcccaggct accgacaagg gcgtcaacaa
     1621 ggcgaccgcg ccgctgttca agacggtgac cacaccgcag cagatggtgg cgctgggcga
     1681 ggccaaactg gccgaggcaa tcaagaccat cgggctctat cgcggcaagg ccaagaatgt
     1741 tatcgcgctg tcaaaaattt tgctggaaca gcacggcggc caagtgccga aaagccgcga
     1801 ggcattggaa gcgctacccg gggtggggcg caagaccgcc aatgtggtgt tgaacgtggc
     1861 tttcggcgaa ccgaccatcg cggtggacac ccacatcttc cgcgtctcca accgcaccgg
     1921 cctagcgccg ggcaagaatg tgctggaagt ggaattgggc ctcgagaaga tcgtgcccga
     1981 tcactataag agccatgctc atcactggct gatcctgcac gggcgttata cctgtgtcgc
     2041 ccgcaagcca ctttgcccca cttgcgtggt gcgcgatctt tgccagttca aggaaaagac
     2101 gagagagctt ccgccgatga aagcaaaggc gccaatcccc aaaaaatccg tccgtggtcg
     2161 cgctcaaggc aagaaataga ggctgttgtg cttgagctga atcgtgtctg ccctctcctc
     2221 ttgagggaga ggaagaaaaa tcattgggtt agcggagcgt agcgacgctc aacccattga
     2281 tttttcaggt gaggggtgag ttgggtgcaa acgcacccct cacctagcaa aatctaagca
     2341 cttggcttcg ctgcgcttcg ccaagtgcaa gattttgcgt cctctccctc aaggggagag
     2401 ggaaatcttg agccaaattt ataacaaccg ctaagacgtc tttgccggcg aagcgcgcaa
     2461 agcggtaagg caggcggaat ccgccgcgct ctgcacccca tgcggcaagg tctcgacatg
     2521 gcgcaccgcc agcggcgcgc cgtagagaaa gaagaaagcg cggcaggctt cgccgtcata
     2581 acgccacatc tcagtggcgc catctttgcg gacaaaggcg gggcggccga acgccgcctg
     2641 caggcccgtg gccggcatgt tgagatactg accgggttcg ccgcgcggcg gtgcgggcgg
     2701 aatggcggcg atactgggcg gggcgggcgg caagggcgcc ttggcggcac agcccacggc
     2761 cagcagggcg aagatcaggc agggcatacg gcggatcatc gagcgccttc tgcaccagcc
     2821 gcgtccggcc gacaagtgct tgcgcggggg cgctgcctgc gtgtaagcgg ggttttccat
     2881 ctcacggggt tcgcatgacg catcagcaat atgacgtcgc cggtctgggc aatgccatcg
     2941 tggacatcat cgcctcggtg gacgaccgtt ttctgctgac ccaccggatc gccaagggcg
     3001 gcatgaccct gatcgac
//
LOCUS       DATMDK010000184         2043 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1001300,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000184 DATMDK010000000
VERSION     DATMDK010000184.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2043)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2043)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2043
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1001300"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            136..1158
                     /locus_tag="VNN98_03510"
     CDS             136..1158
                     /locus_tag="VNN98_03510"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF014414.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cyclopropane-fatty-acyl-phospholipid synthase
                     family protein"
                     /protein_id="HWM61188.1"
                     /translation="MSFATAAASLAERARLPDFVIRAGMRRVIAANDACVTPPGTDAA
                     FARAMAAHAIAEHADAANRQHYELPPEFFALFLGPHRKYSSCLYPCSTESLGDAEAIA
                     LAETVAHAGLAAGQEILELGCGWGSLSLYMAAKFPTARITSVSNSAPQRLYIEAQARA
                     RGLTNLTVITADMNDFATDKPFDRVVSVEMFEHMANWQALLSRVRTWLKPDGGLFLHI
                     FTHRHRPARYDWRDPEDWMGQHFFTGGIMPTVGLIRQFPDLFAVEEEWRWSGAHYQRT
                     ALQWLELFDANRAQIDPILRTVYGAEAQLWRRRWRMFFLATAESFGFRGGDSWGVNHY
                     RLKPAP"
     gene            complement(1162..1719)
                     /locus_tag="VNN98_03515"
     CDS             complement(1162..1719)
                     /locus_tag="VNN98_03515"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: protein motif:HMM:NF012478.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FKBP-type peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HWM61189.1"
                     /translation="MRRRSTLLALAALLCAPFASHAAEEPLGASANAAFLAANTKKPG
                     TIIRPSGLQYRVLRNGTGKRPGANDVVRLVYAIRLINGALVDSTTPVLPATLVVSSVA
                     MAGLAEALSLMHEGDRWQLAIPANLAFGGKGAMNGAIPPGQSLLVDVTLVSAAPPEPG
                     QTVTENPFSVWGNGRENGAAFTIRP"
     gene            1845..>2043
                     /locus_tag="VNN98_03520"
     CDS             1845..>2043
                     /locus_tag="VNN98_03520"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61190.1"
                     /translation="MRKTIGIIAACFFIAGGAAQAQPKGPEKIIIDTDIGDDIDDAFA
                     LGLALSSPEFEVLGLSAGFGDT"
BASE COUNT          348 a          683 c          632 g          380 t
ORIGIN      
        1 cattgcggcc gccctgcttg ccgtgaccct cgtctgcatg gtgatctcgc gttatgtctg
       61 agcgctggcg gtccttcatg gaatgatccg ccggccgctt ccttgcgtaa tccggggcaa
      121 agaggacatt cgcgcatgag cttcgccacc gccgccgcca gcctggccga gcgcgcgcgc
      181 ctgcccgatt tcgtgatccg cgccgggatg cgccgggtga tcgccgccaa tgatgcctgt
      241 gtgacaccgc ccggcaccga cgccgctttc gcccgcgcca tggccgccca cgccatcgcc
      301 gaacatgccg acgccgccaa ccgccagcat tacgaactgc cgcctgaatt cttcgctttg
      361 ttcctggggc cgcaccgcaa atattccagc tgcctctatc cctgcagcac ggagagtttg
      421 ggcgacgccg aagccatcgc gctggccgaa acggtggccc atgcgggcct tgccgcgggg
      481 caggagattc tggaactcgg ctgcggctgg ggctcgctgt cgctgtacat ggcggcaaaa
      541 tttcccaccg cgcgcatcac gtccgtctcc aactccgcgc cgcagcgcct ctatatcgaa
      601 gcccaggcgc gggcccgggg cctcaccaac ctcaccgtca tcactgccga catgaatgac
      661 tttgccaccg acaagccatt cgatcgcgtg gtgtcggtgg agatgttcga gcatatggcc
      721 aactggcagg ccctgctgtc acgcgtgcgg acctggctga agccggacgg ggggttgttc
      781 ctgcacatct tcacccaccg ccatcgcccc gcgcgttacg actggcgcga tccggaggac
      841 tggatgggcc agcatttctt caccggcggc atcatgccca cggtggggct gatccggcag
      901 tttcccgatc tttttgcggt ggaagaggaa tggcgctgga gcggcgcgca ctatcagcgc
      961 accgctttgc aatggctgga attgttcgac gccaaccggg cgcaaatcga tcccatcctg
     1021 cgcactgtct atggcgccga ggcgcagctt tggcggcggc gctggcgcat gttcttcctg
     1081 gccaccgccg aaagctttgg ctttcgcggc ggcgactctt ggggcgtcaa ccactaccgg
     1141 ctgaaaccgg caccttaaaa atcagggccg gatggtgaag gcggcgccgt tttcgcggcc
     1201 attgccccat accgaaaagg gattctcggt taccgtttgg cccggctccg gcggcgcagc
     1261 ggagactagg gtcacatcga ccagcaagct ttgccccggg ggaatggcgc cgttcatcgc
     1321 gcccttgccg ccgaaagcca gattggccgg gatcgccagc tgccagcgat cgccttcatg
     1381 catcaaggac agcgcctcgg ccagcccggc catcgcgacg ctgctcacca ccagggttgc
     1441 gggcagcacc ggagtagtgc tgtccaccaa ggcgccgttg atcagacgga tggcatagac
     1501 cagccgcacc acatcattgg cgcccggccg cttgcccgtg ccgttgcgca agacacgata
     1561 ttgcagcccg ctggggcgga tgatggtgcc gggctttttg gtattggcgg ccaggaaggc
     1621 ggcattggcg ctcgcaccca gcggctcttc tgccgcgtgg gatgcaaacg gcgcacacag
     1681 cagcgccgcc agggccagaa gggtggaacg ccgtctcatt tttcttcgtc cttgatcgcg
     1741 caccatctga gcgtttttgc gcaggcctgg tcaatacggg ctttgacctt tccgcccgaa
     1801 acccggcatc atcatggcaa acggaaaggt caggggcgaa atacatgcga aaaaccatcg
     1861 ggataatcgc cgcctgtttt tttatcgcgg gcggcgcggc gcaggcccag cccaaaggcc
     1921 ctgagaaaat catcatcgac acggacatcg gcgatgacat cgacgatgcc ttcgccctgg
     1981 gcctggcact gtccagtccg gaattcgagg tgctgggcct ctcggccggc ttcggcgaca
     2041 ctg
//
LOCUS       DATMDK010000185         7166 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2600181,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000185 DATMDK010000000
VERSION     DATMDK010000185.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 7166)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7166)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7166
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2600181"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            32..4927
                     /locus_tag="VNN98_03525"
     CDS             32..4927
                     /locus_tag="VNN98_03525"
                     /inference="COORDINATES: protein motif:HMM:NF019323.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004866 - endopeptidase inhibitor activity
                     [Evidence IEA];
                     GO_process: GO:0010951 - negative regulation of
                     endopeptidase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-2-macroglobulin"
                     /protein_id="HWM61191.1"
                     /translation="MDKNRRLLLIVGGGLAAFLAVTLVAVYLLGGRAAGPDTGVLARL
                     QNGLSAITGAPPATQEAQYFAFRRLEIDVSKPQAEACLVFTRTLDASGKTHYEDYLSI
                     DPALRIAARVVDTRLCLSGMAFDKTYNVTLKVGLPSAGGDKLTAEETVPVELRDKPSL
                     VRFTGGIILPRDNAAGVPVTTVNIDKLSIRIIRVGDRLLSQIETGNVDNTTLYGWDAK
                     QLQDNQGSLVWQGSMAVDNVKNDSVVTLIPIHDLLKGKKPGAYVVVAQDAAKKPTSDD
                     DNSGELAMQWVVDSDIALTTFTSANAATGSGLAVFARSYDRATPLAGVKLTLVAHNNN
                     ELASVTTDSNGRADFDASLFKATGGDEPVMVMAYGPDGDFSFLDLRRSAFDLTDRGVG
                     GRSSPGPVDAWLYTERGIYRPGETVQAVAMLRDRIGAAITAPLTLVAQRPDGIEVGRI
                     TVAGDKLAAGSTGWTLPLSQSAPHGRWQIAAYIDPKAPAVGRVQFDVADFVPQRLKVT
                     LTALDKSIKPGGDFHVRVESRFLYGAPASGLSGDGEATIAADPTPYPQYHGFQFGRVD
                     DSFSETKVDLTVPATDAAGITTVTGNTGALADTTLPLKALVRISIHEPGGRTTDKSTD
                     IPIRTHEAAIGIRPLFDGGSVPENARAGFEVIALDADGKRIALNGLAYSWVREDTSYQ
                     WFQTNGEWKYQPTTRDRLISSGGMDVGAGPSARLEQALPYGSYRLTISDAKSGAASSY
                     RFYSGWAASSAGDRPDRIPVAADKPAYAPGAVAHVRIKPDGNGKALVVIAGDRVFSSK
                     LIDAPASGATVDIPVSADWGAGAYVLVTDYRPLSGVKGREPVRSIGVAWLGVDNAPRT
                     LNVTVGGADKILPRQKVTIPVTIKGLANEDAWVSLAAVDEGILQLTDFKSPDPVFYYF
                     GKRRLGVLMRDDYGRLIRVEKGAVGTLEQGGDSFGGRSLAVVPQKTVALFSGLVKVGA
                     GGTASITLDVPDFNGSLRLMAVAWSADKLGHADRMLVVRDPVVADLVLPRFLSPGDAI
                     GAALNLDNVEGGPGAYVATIQTHGPVSLAGGAQTVVNQTLKRGQRILVPVQLRGAGLG
                     IAGIILDVKGPNGFHVSHGWPIQVRAAQLDVAREEELPLPAGATYLANRALVSDLVGS
                     TAGVTLSVSAAHGYNNVAGLLKWLDKYPYGCIEQTTSRAQPLLLFNDVADLAGLPKDN
                     ALRPRLQRSIDQVLDMQNFAGNFGMWGPGSDADSFLSVYAMDFLYQAKAKNYVVANDA
                     LKRGTNWLKTTGTAQGSDDLTRAYAFYVLAANGQANVSDLRYFSDTKVAAMKSALAAA
                     LTGAASSLTGDRARAEYGFGKARDLIARADPATYPHDVYGSLLRDVSGAIALAAENGK
                     ADLVPQLLDKVKNLNTKVEDTTTQEKGWMLRAAYALTRQKLPLNITVNGAPASLRDGA
                     VRLTPTLAQLDAGVTLANKGDAGVWRSTAISGTPNAALPVMASGFTLSKSIWTMSGAP
                     ADVASLHQNERVIIVISGQMPNALYHQMGVIDLLPAGLEIEQPLKGDDAKAYPFVGTL
                     TEANMQDARDDRFVAAFDIGERYRPVNRKTPEPTPAFHVAYIARAVSVGHFTMPAAWA
                     EDMYAPAIRARTAMGELNIGQ"
     gene            4929..5108
                     /locus_tag="VNN98_03530"
     CDS             4929..5108
                     /locus_tag="VNN98_03530"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61192.1"
                     /translation="MNWKFFALAAVYWVAVAIILVLLFNFDPQLATSRWTFAGLVAIS
                     LLAVFVVKKLSAPKT"
     gene            5144..>7166
                     /gene="pbpC"
                     /locus_tag="VNN98_03535"
     CDS             5144..>7166
                     /gene="pbpC"
                     /locus_tag="VNN98_03535"
                     /inference="COORDINATES: protein motif:HMM:TIGR02073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009274 - peptidoglycan-based cell wall
                     [Evidence IEA];
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 1C"
                     /protein_id="HWM61193.1"
                     /translation="MTFSAVGIFCALITADRANPPDMTRARALSPEVTARDGTLLRAF
                     LSKDGAWRIRTTPDQVGPRYLVLLKAYEDKRFDRHWGVDPPAMLRAAFQFAHAGHIVS
                     GGSTLTMQVARLLEPHGHGVLGKGFQIIRAAQLEEPYSKDEILSLYLTLAPMGGNLEG
                     VRAASLSYFGKEPAGLDLAESALLVALPQSPVKQRPDRHAQRALAGRDKVLHRMVAEG
                     VVSVGDAATAMKEGVPFARQPMPLAAPHLAQRLVLAQARLPLGAQRQEGEVAVAALAM
                     RRPEGVIKTTIDIGIQAAAERLAKQERAYFDDGADISLVVVENKTRNVIAYVGGTDYW
                     GKAGQVDLAARARSPGSALKPFIYGLAFDALVLHPASRMEDAPTSFGDYAPRDFDGQF
                     QGAVTARDALQMSLNIPAVMVLDRVGPLAFTLSLQNAGAHLAFPTRDSPSLPVALGGL
                     GISLSDIAMLYAGIAEGGTAQGLRFVADAPDAPRHRLFGPVAAWYLRDVLDGVALPDG
                     WAMGQGLLKKRSIGFKTGTSYGFRDAWAVGFSNDYTVAVWVGRADGTPRPGHVGREAG
                     APVLLKMFGLLPSDKRPAPSVPAGALLVSATDQLPPSLRTFTREITPPAQPQVAELPP
                     PAIAFPPNGAVVPLPDAHAKDAAIQFKADGGRAPLTWLVNGAPLGSFDRF"
BASE COUNT         1194 a         2291 c         2384 g         1297 t
ORIGIN      
        1 ggcttcatgc cttaagaatc tggggcggcg catggataag aatcggcggc ttttgctcat
       61 tgtcgggggc ggccttgctg cgttcctggc cgtgactttg gtggcggtgt acctgctggg
      121 tgggcgcgcc gccggaccgg atacgggggt gctggcccgg ctgcagaacg ggctcagcgc
      181 catcaccggc gcgccgcctg ccacgcaaga agcccagtat ttcgctttcc gccgcctgga
      241 gatcgacgtc tccaagcccc aggccgaagc ttgcctggtc ttcacccgca ccctggatgc
      301 cagcggcaag acccattacg aggattatct ctccatcgat cccgcgcttc gtatcgccgc
      361 cagggtggtg gatacgcggc tgtgcctgtc gggcatggcg ttcgacaaga cctataacgt
      421 caccttgaag gtgggcctgc cttcggccgg cggcgacaag ttgacggcgg aagaaaccgt
      481 gccggtcgaa ttgcgcgaca agccttcgct ggtgcgcttc accggcggca tcatcctgcc
      541 gcgtgacaat gcggcgggcg taccggtcac caccgtcaat atcgacaaat tgtcgatccg
      601 gatcatccgg gtgggcgatc ggctgctgtc gcagatcgag accggcaatg tggacaacac
      661 cacgctttac ggctgggacg ccaagcagct gcaggacaat cagggcagcc tggtgtggca
      721 gggcagcatg gccgtcgaca atgtgaagaa tgacagcgtg gtgaccttga tcccgatcca
      781 cgacctgctg aaaggcaaaa agcccggcgc ctatgtggtg gtggcgcagg acgccgccaa
      841 gaagcccacc agcgacgacg acaatagcgg cgaactggcg atgcaatggg tggtggacag
      901 cgacatcgcg ctgaccacct tcaccagcgc caatgccgcc accggctccg ggcttgcggt
      961 gttcgcacgt tcctatgacc gcgccacgcc gctggcgggg gtgaagctga ccctggtggc
     1021 ccacaacaat aacgaactgg ccagcgtcac caccgactcc aatggccgtg ccgatttcga
     1081 cgccagcctg ttcaaggcca ccggcggcga cgagccggtg atggtgatgg cctatggtcc
     1141 cgacggggat ttttcgttcc tggatctgcg ccgctcggct ttcgacctga cggatcgcgg
     1201 cgtgggcggg aggagttcgc ccgggcccgt ggacgcctgg ctttataccg agcgcggcat
     1261 ctatcgcccc ggcgagacag ttcaagcagt ggcgatgctg cgcgaccgta tcggggctgc
     1321 catcaccgcg cctttgaccc tggtggcgca gcgccctgac ggcatcgagg tggggcgcat
     1381 caccgtggcg ggcgacaaat tggcggcggg cagcaccggc tggaccttgc cgctgtcgca
     1441 aagcgcgccg catgggcgct ggcagatcgc cgcctatatc gatcccaaag ccccggcggt
     1501 gggccgggtg cagttcgacg tggccgactt cgtgccccag cgactgaaag tgactctgac
     1561 ggcgctggac aaaagcatca agccgggcgg cgattttcac gtccgggtgg aaagccgctt
     1621 tctctacggt gcgcccgcct cgggcctttc cggtgacggc gaagccacca tcgccgcaga
     1681 tcccacgccc tatccgcaat atcacggctt ccagttcggc cgggtggacg acagcttctc
     1741 cgaaaccaaa gtggatctga ctgttcccgc caccgatgcg gcgggcatca ccaccgtcac
     1801 cggcaacacc ggcgcgctgg ccgataccac cttgccgctg aaggcattgg tgcgcatctc
     1861 catccatgag ccgggcgggc gcaccaccga caagtccacc gacattccca tccgcaccca
     1921 tgaggcggcc atcggcatcc gtcccctgtt cgatggcggt tcggtgccgg aaaacgcccg
     1981 cgccggattt gaagtcatcg cgctcgacgc cgatggcaag cgcatcgccc tgaacggctt
     2041 ggcctatagc tgggtgcgcg aagacaccag ctaccaatgg ttccagacca atggcgaatg
     2101 gaaatatcag cccaccaccc gcgaccggct gatcagcagc ggcggcatgg atgtcggcgc
     2161 gggcccgtct gcgcgcctgg aacaggcgtt gccctatggc agctaccggt tgaccatcag
     2221 cgatgccaaa tcgggcgcgg cctcgtcgta ccgcttctat tccggctggg cggcatccag
     2281 tgcgggcgac cggcccgacc gcattcccgt cgccgccgac aagccggctt atgcgcccgg
     2341 cgcggtggcg catgtccgca tcaagcccga cggcaacggc aaggcgctgg tggtgatcgc
     2401 gggtgaccgc gtcttttcct ccaaactgat cgacgcgccg gccagcggcg ccacggtgga
     2461 tattccggtt tccgccgatt ggggcgcggg cgcctatgtg ctggtgaccg attatcgccc
     2521 gctgtccggg gtcaagggcc gcgagccggt gcgcagcatc ggcgttgcct ggctgggggt
     2581 ggacaatgcg ccgcgcaccc tgaatgtgac agtcggcggc gccgacaaga ttctgccgcg
     2641 ccagaaggtg acgattcctg tcaccatcaa gggcctggcc aatgaagacg cctgggtgag
     2701 tttggcggcg gtggacgagg gcatcttgca actcaccgat ttcaagtcgc ccgatccggt
     2761 cttctactat ttcggcaagc gccggctggg tgtgttgatg cgcgacgatt acggccgcct
     2821 gatccgggtg gaaaaaggcg cagtcggcac cctggaacaa ggcggcgaca gtttcggtgg
     2881 ccgcagcctg gccgtggtgc cgcaaaagac cgtggcgctg ttcagcggct tggtgaaggt
     2941 gggtgcgggc ggcacagcca gcatcactct ggacgtgccg gactttaacg gctcattgcg
     3001 gctgatggcg gtggcctgga gcgccgacaa gctggggcat gcggatcgca tgctggtggt
     3061 gcgcgatccg gtggtggccg acctggtgct gccgcgattc ttgtcaccgg gagacgctat
     3121 cggcgcggcg ctgaacctgg acaatgtcga aggcggtccc ggcgcctatg tcgccaccat
     3181 ccagacccat ggtccggtgt ctttggcggg cggggcgcag accgtggtga accagactct
     3241 caagcgcggt cagcggattt tggtgccggt gcaattgcgg ggcgcgggct tgggcattgc
     3301 aggcattatc ctggatgtga aagggccaaa tggtttccat gtctcccacg gctggccgat
     3361 tcaggtgcgg gccgcgcaac tggatgtggc gcgggaggag gaattgccct tgcccgcggg
     3421 cgcgacctat ctcgccaacc gcgcgctggt ttccgacctg gtcggttcca ccgccggcgt
     3481 gacgctcagc gtttcagcgg cgcatggcta taacaatgtc gcgggcctgc tgaagtggct
     3541 ggacaagtat ccctatggct gcatcgagca gaccaccagc cgggcccagc ccttgctgct
     3601 gttcaacgat gtcgcagacc tggcgggcct gcccaaggac aatgccttgc gcccacgctt
     3661 gcagcggtcc atcgatcaag tgctggacat gcagaacttc gcgggcaatt tcggcatgtg
     3721 ggggccaggc agcgacgccg acagcttcct cagtgtttat gcgatggatt ttctctatca
     3781 ggccaaggcc aagaattacg tcgtggccaa tgacgcgctg aaacgcggca ccaattggct
     3841 gaagaccacc ggcacggcgc agggcagcga cgatctcacc cgcgcctatg ccttttacgt
     3901 gctggcggcc aatggccagg ccaatgtctc ggacctgcgc tatttcagcg ataccaaggt
     3961 ggcggcgatg aagtcggcgc tggcggcggc gctgaccggt gcggcctcgt cgctgaccgg
     4021 cgaccgggcg cgggccgaat atggtttcgg caaggcgcgc gacttgattg cgcgcgccga
     4081 tccggcgacc tatccgcatg acgtttacgg ttcgctgctg cgcgatgtct ccggcgctat
     4141 cgccctggcg gcggagaacg gcaaggccga tctggtgccg caactgctgg acaaggtgaa
     4201 aaacttgaac accaaagtcg aggacaccac cacccaggaa aaaggttgga tgctgcgcgc
     4261 cgcctatgcc ctgacccgcc agaagctgcc gctcaacata acggtcaatg gcgcgcccgc
     4321 gagcctgcgc gatggcgcgg tacggctgac gccgactttg gcgcaattgg acgccggcgt
     4381 gaccttggcc aacaagggcg atgcgggcgt gtggcgctcc accgccatca gcggcacgcc
     4441 caatgcggcg ctgcctgtca tggccagcgg cttcaccttg agcaaaagca tctggaccat
     4501 gtcgggggcg cccgcagacg ttgcgtcgct gcatcaaaac gagcgggtaa ttatcgtgat
     4561 cagcggacag atgcccaacg cgctgtatca ccagatgggt gtgatcgatc tgctgcccgc
     4621 ggggctggag atcgagcagc cgctgaaagg cgacgacgcc aaggcctacc cctttgtcgg
     4681 caccttgacc gaggccaata tgcaggacgc gcgcgacgac cgctttgtcg ccgccttcga
     4741 catcggcgaa cgctatcgcc ccgtcaaccg caagacgccg gagccgaccc ccgccttcca
     4801 tgttgcttac atcgcccgcg ctgtgtcggt gggccatttc actatgcctg ccgcctgggc
     4861 cgaggatatg tacgcccccg cgatccgggc gcgcacggcg atgggcgagt tgaacatagg
     4921 acagtgatat gaactggaaa ttctttgcgc tggcagcggt ctattgggtg gctgtcgcca
     4981 tcatcctggt cctgctgttc aatttcgatc cccaactggc aacgtcgcgt tggacgttcg
     5041 caggcctggt ggcgatcagt ctgctggctg tctttgtggt caagaaactg tctgcgccaa
     5101 agacttgaat gtgatgagac tgtcgcgccg gaatatcgtt gttttgacat tttccgccgt
     5161 cggcattttc tgcgcgctta tcaccgccga ccgcgccaat ccgcccgaca tgacgcgggc
     5221 gcgcgccttg tcgccggaag tcacggcgcg ggacggcact ttgttgcgcg cctttctcag
     5281 caaggacggc gcctggcgca ttcgcaccac gccggatcag gtgggcccgc gctatctcgt
     5341 cctgctcaag gcgtatgagg acaagcgctt cgaccggcat tggggcgtcg atcccccggc
     5401 catgctgcgc gccgccttcc agttcgccca tgccgggcac attgtcagcg gcggctcgac
     5461 cttgaccatg caggtggcgc ggctgctgga gccgcatggt cacggtgtgc tgggcaaagg
     5521 cttccagatc atccgcgcgg cgcagttgga agaaccatat tccaaggacg aaatcctttc
     5581 gctctatctg accttggcgc cgatgggcgg caatctggaa ggggtgcgcg cggcttcgct
     5641 gtcctatttc ggcaaggaac cggcgggcct ggaccttgcc gaaagtgcgc tgctggtggc
     5701 gctgccgcaa tcgccggtca agcaacggcc cgaccgtcat gcgcagcgcg cgcttgcggg
     5761 ccgcgacaag gtcttgcacc gcatggtggc ggaaggcgtg gtcagtgtgg gtgacgccgc
     5821 cactgccatg aaagaaggcg tgcccttcgc ccgccagccc atgccgctgg ccgcgccgca
     5881 tctggcgcag cggctggtgc tagcacaggc ccgtctcccc ctcggcgcgc agcgccagga
     5941 gggggaggtg gccgtagcag cgcttgcgat gcgaaggccg gagggggtca tcaaaacaac
     6001 catcgatatc ggcattcagg cggcagccga acggctggcc aagcaggagc gtgcctattt
     6061 cgacgacggc gccgacattt cgctggtggt ggtggagaac aagacgcgca acgtcatcgc
     6121 ctatgtcggc ggcaccgatt actggggcaa agcggggcag gtggatttgg cggcccgcgc
     6181 ccgctcgccg ggctcggcat tgaagccttt catctatggc ctggccttcg atgcgcttgt
     6241 cctgcatccc gccagccgca tggaggacgc gcccaccagc ttcggcgatt acgcgccccg
     6301 cgatttcgac ggtcaatttc agggcgcggt gacggcgcgc gatgcgctgc agatgtcgct
     6361 gaacattccc gccgtgatgg tgctggatcg ggtggggccg ctggccttca ctttgtcctt
     6421 gcagaatgcc ggtgcgcatc tggcctttcc cacgcgtgac tcgcccagcc tgccggtggc
     6481 gctgggcggg ttgggcattt cgctatccga tatcgccatg ctctatgccg gcatcgccga
     6541 gggcggcacg gcgcaaggat tgcgctttgt cgccgacgcc cccgatgcgc cgcgtcatcg
     6601 cctgttcggt ccggtggcgg cctggtatct gcgcgatgtg ctggacgggg tagcgctgcc
     6661 ggacggctgg gcgatggggc aggggctttt gaagaagcgc agcatcggct tcaagaccgg
     6721 cacctcttac ggtttccgcg acgcctgggc agtgggcttt tccaatgatt ataccgtggc
     6781 ggtgtgggtg ggccgcgccg acggcacgcc gcgccccggc catgtcgggc gcgaggccgg
     6841 tgcgccggtc ctgctgaaaa tgttcggcct gctgccgtcc gataagcgcc ctgctccgtc
     6901 ggtgccggcg ggcgccttgc tggtcagcgc caccgaccag ctgccgccca gccttcgtac
     6961 tttcacgcgc gagatcacgc ctccagcgca gccgcaggtc gccgaactgc cgccgcccgc
     7021 tatcgccttt ccgcccaacg gcgcggtggt gccgttgccc gatgcgcatg caaaagacgc
     7081 ggcgattcag ttcaaggccg acggcgggcg cgcgcctttg acctggctgg tgaacggcgc
     7141 gccgctgggc agcttcgacc gtttcg
//
LOCUS       DATMDK010000186         2882 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2600242,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000186 DATMDK010000000
VERSION     DATMDK010000186.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2882)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2882)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2882
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2600242"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..554
                     /locus_tag="VNN98_03540"
     CDS             <1..554
                     /locus_tag="VNN98_03540"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61194.1"
                     /translation="SDQVLSVAPQATGAPISIRESGKTIVGAFAEAGILSFIVIMVLL
                     ALVLRSVHDVLMTLAPLVLSGLLTLATCVLLGLKLNFANVIALPLLLGIGVAFNIYFV
                     VSWRHGQRCFLASSLTRAVIFSAATTASGFGTLWLSVHPGTASMGELLMISLGWVLAT
                     TLFLSPALLGAPTHTLRMHDPEV"
     gene            complement(839..1459)
                     /locus_tag="VNN98_03545"
     CDS             complement(839..1459)
                     /locus_tag="VNN98_03545"
                     /inference="COORDINATES: protein motif:HMM:TIGR03481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HWM61195.1"
                     /translation="MSRILKFVAVALMLAAAPAALILPPQPAMAEAADPASAQVQGFY
                     DALLASMKSGGTAKSRYEKLKPVVEKAFDLPAMTATAVGPGWTSMSDADKKTLTDAFS
                     RMTIANYAKNFDSYDGEKFTVAPASIARGSEHFVKSSMKTSSDTIAFNYRLHQLGSDW
                     KITDVYLAGNISQMAQKRSDFAATLTSGGPQGLAKRINALTDQMLG"
     gene            complement(1560..2504)
                     /locus_tag="VNN98_03550"
     CDS             complement(1560..2504)
                     /locus_tag="VNN98_03550"
                     /EC_number="2.5.1.10"
                     /inference="COORDINATES: protein motif:HMM:NF045485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004337 - geranyltranstransferase activity
                     [Evidence IEA];
                     GO_process: GO:0008299 - isoprenoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="farnesyl diphosphate synthase"
                     /protein_id="HWM61196.1"
                     /translation="MSDKLRGAAKMPPGRSSQLPHDQLNGAIAASAKLVDSALDAVLP
                     RPEGRQARVQEAMRYAIMAGGKRLRPFLVLHSARLFGVDDSRSLRVGAAIEALHTYSL
                     VHDDLPCMDDDDLRRGRPTTHIAFDEMTAVLAGDALLTIAFEILADARTHPSADVRCA
                     LIARLADASGHSGMIGGQIIDMLADKSFGVEDVIDLQRRKTGQLFEFSCEAGPILGQA
                     SAEDRARLKAYAEDMGVVFQITDDLLDVTSTAEKTGKAVGKDADMGKQTLVTLLGVEG
                     ARAEAQTRASRAVEALGPYAAQAPELTALPFFLLDRDA"
BASE COUNT          485 a          966 c          884 g          547 t
ORIGIN      
        1 tttccgatca ggtgttgagc gtggcgccgc aggcgaccgg cgcacccatt tccattcgcg
       61 agtccggcaa gaccatcgtg ggagccttcg cggaagccgg aatcctgtcc ttcatcgtga
      121 tcatggtctt gctggcgctg gtgctacgca gtgtccatga cgtgctgatg accctggcgc
      181 cgctggtgtt gtcgggcctg ctgaccttgg ccacctgtgt gctgctgggc ctgaagctga
      241 acttcgccaa tgtcatcgcc ctgccgctgc tgctgggcat cggcgtcgcc ttcaacatct
      301 atttcgtggt gtcctggcgg cacggccagc gctgtttcct ggcgtccagc ctcacccgcg
      361 cggtgatctt ttccgccgcc accacggcca gcggcttcgg caccttgtgg ctgagcgtcc
      421 atcccggcac cgccagcatg ggcgagttgc tgatgatctc gctgggctgg gtgctggcga
      481 cgaccttatt cctgtcgccc gccctgctgg gcgcgccgac gcataccttg cggatgcacg
      541 atcccgaagt ttgagtcgat aatctcgagc gccgcacatc gcggcgcgac cttccgcatc
      601 cgacagcttc cttcccgtga ggcggattag cgaaaggtcc agtggacctt tcgcccgacg
      661 aacgcgaagc ggagtggcaa tgcttcaacc tgctcagtcc gcactacccg caaaaaaaga
      721 agaaggcctg cctctggaat tcgtcccggc ctcacggcgc gcttggccgc gcgccgctgc
      781 ggcgttcggc gctttcgcag gtccactgga cctgctcacc cgctacgcgg gacgcgcctc
      841 acccaagcat ctgatccgtc agcgcattga tccgtttcgc caacccctgc ggcccgcccg
      901 aggtcagcgt ggcggcgaag tcggagcgct tctgcgccat ctggctgata ttgcccgcca
      961 gatagacgtc ggtgatcttc cagtccgaac ccagctgatg caggcgatag ttgaaggcga
     1021 tggtgtcgct gctggtcttc atgctgctct tgacgaagtg ctcgctgccg cgggcgatgg
     1081 aagccggcgc gacggtgaac ttctcgccgt cataggagtc gaaattcttg gcataattgg
     1141 cgatggtcat gcggctgaag gcatcggtca gcgtcttctt gtcggcgtcg gacatgctcg
     1201 tccagcccgg gcccaccgcg gtggcggtca tggcgggaag atcgaaagcc ttctccacca
     1261 ccggcttcag cttctcatag cgcgacttgg ccgtcccacc cgacttcatc gaggccagca
     1321 gggcgtcata gaagccctgc acctgggcgc tggccggatc ggcggcttcc gccatcgccg
     1381 gctgcggcgg caggatcaat gcggcggggg cggcggccag catcagtgcg acggcaacga
     1441 atttcaaaat acggctcatg aaaatctcca tagactccag ggtaacgaga ctcccggata
     1501 acgcccgaaa atcgaatatg aacgcagaag acggcaaatt tccggctttt tccagcgcat
     1561 caagcgtccc ggtccaacag gaagaagggc agcgccgtca gttcgggcgc ctgggcggca
     1621 taggggccca gcgcttccac cgcgcggctg gcgcgcgttt gcgcttcggc ccgcgcgcct
     1681 tccacgccca gcaaggtcac caaggtctgc ttgcccatat cggcatcctt gcccaccgct
     1741 ttgccggtct tctcggccgt gctggtcaca tccagcagat cgtcggtaat ctggaacacc
     1801 acgcccatat cctcggcata ggccttcagc cgcgcccggt cctccgccga cgcctggccc
     1861 aggatcggcc ccgcctcgca ggagaattca aacagctgtc cggtcttgcg ccgctgcagg
     1921 tcgatcacgt cctcaacccc gaaactctta tcggccagca tgtcgatgat ctggccgccg
     1981 atcatccccg aatggccgct ggcgtccgcc aggcgggcga tcagcgcaca gcgcacgtcg
     2041 gcgctgggat gggtgcgggc atcggcaaga atttcaaagg cgatggtcag cagcgcgtca
     2101 cccgccagca ccgccgtcat ctcgtcaaag gcgatatggg tggtgggacg gccgcggcgc
     2161 aaatcgtcgt catccatgca gggcagatcg tcatgcacca agctgtaagt gtgcagcgcc
     2221 tcgatcgccg cgcccacccg cagggaccgc gaatcatcca ccccgaacag ccgcgccgaa
     2281 tgcagcacca ggaagggcct gagccgcttg ccccccgcca tgatggcgta gcgcatggcc
     2341 tcctgcaccc gggcctggcg gccttcgggc cggggcagca cggcgtccaa agccgaatcg
     2401 accagcttgg cgctggcggc gatggcacca ttcagctggt catggggcag ctgggatgac
     2461 cgtcctgggg gcattttggc cgccccgcgc aatttatcgg acataacgcc ccatctcagg
     2521 cccacttgtt agcccattgg gggcggtttg gccccccggc cagccaactc tcatggaccg
     2581 cttttagccc tgaaaccgtt cgtcttgcca gccggtttcc cgcaaagttc ccacctttca
     2641 ggcatttcac aaggctggcc gtccaggggc gggtacccat accgaagtag gggttgcacc
     2701 ccctatcccg aaaggggaaa atggctatgt tgcagcgccg cactgatatt ttgcccggcc
     2761 ttcgccgggc gggggcatga ccgggggcgg tcaggcctaa ttggagccga atttagggac
     2821 cgacatgcga gttattcttg cccagccacg cggcttctgc gccggggtcg tgcgcgccat
     2881 cg
//
LOCUS       DATMDK010000187         2097 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2601421,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000187 DATMDK010000000
VERSION     DATMDK010000187.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2097)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2097)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2097
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2601421"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..326
                     /locus_tag="VNN98_03555"
     CDS             <1..326
                     /locus_tag="VNN98_03555"
                     /inference="COORDINATES: protein motif:HMM:NF015587.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="YhjD/YihY/BrkB family envelope integrity
                     protein"
                     /protein_id="HWM61197.1"
                     /translation="VISIINLGLSFLIVSLLFAAIYKLLPNTKLLWRDVLVASCGTAI
                     AFEVGQSLIGYYLANFITANIYGAAGGIIVLLIWVYYSAQIFLLGAEFTKVWARHYGS
                     QRRKD"
     gene            388..801
                     /locus_tag="VNN98_03560"
     CDS             388..801
                     /locus_tag="VNN98_03560"
                     /inference="COORDINATES: protein motif:HMM:NF018168.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body rod C-terminal
                     domain-containing protein"
                     /protein_id="HWM61198.1"
                     /translation="MADAMRISASGMQAAFQTLSSVAANLANANSNGPVPSTPPTQAV
                     APTAGSVYQPTTSIQTTAPGGGVTTSLQPSLPSYNLAYDPQSPYANMQGMIATPNVDI
                     ASQIVAKIEAVNSFRANLAVYKTASRLYKSLLDIA"
     gene            complement(814..>2097)
                     /locus_tag="VNN98_03565"
     CDS             complement(814..>2097)
                     /locus_tag="VNN98_03565"
                     /inference="COORDINATES: protein motif:HMM:NF019843.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HWM61199.1"
                     /translation="TALMAALMHDHPGPVEPAAPVEHAAAAPAPVSKADVTPESSVST
                     PDAWLERRLRVFERALNALEARAETTAQLQARAIAQLEERLAALGQGAPASLSIFATV
                     KPAESAVPQLPVEAPAAEEVVAAPEAEKKPVPEPLSLAPLPVLTISKEEMADVLQSAR
                     DKARAAAAIAAEPKKPSLDKTVRARWLAIGALSLVVLFLCIGLTLGNTASATQPAWQG
                     SGVTQRHVAGGALARTIALADAGDARAQARLALAYLRGQGVASDPVTALRWSIVAARE
                     GQPVAQYLLGALYQQGEHVPADPQRAFAWFAAAAAKGNLKAMHNLGIAYAQGLGTMKD
                     DAKAVEWFTRAAERGYVDSAFDLAVLYERGEGVPQDLRQALKWYGIAGLAGDAPSKAR
                     AEVLRGQLNPVEAKLAANAAQAFTPLPALGEANSL"
BASE COUNT          383 a          719 c          615 g          380 t
ORIGIN      
        1 tggtgatcag cattatcaat ctcggactgt ccttcctcat tgtctcgctg ctgttcgccg
       61 ccatctataa gctgctgccc aacaccaagc ttttgtggcg cgacgtgctg gtggccagtt
      121 gcggcacagc catcgctttt gaggtcggcc agagcctgat cggctattac ttggccaatt
      181 tcatcaccgc caacatctac ggcgccgcgg gcggcatcat cgtgctgctg atctgggtct
      241 attactcggc gcagatattc ctgctgggcg cagagttcac aaaagtctgg gcccgccact
      301 acggcagcca gaggcggaag gactaatcgc taaaatgcgc cgtaatttat tcggcggata
      361 tcaaagcgcc tatgcgcaaa tcggcccatg gctgacgcga tgagaatctc cgcctcgggt
      421 atgcaggccg cgtttcagac cctgtcttcc gttgcggcaa atctcgccaa tgcgaatagc
      481 aacgggccgg taccaagcac cccgccgacc caagccgtcg caccgacggc cggaagcgtc
      541 tatcaaccga ccaccagcat acagaccacg gcaccgggcg gcggcgtaac gacatccctt
      601 cagccaagtt tgccgagcta caatctggcc tatgacccgc aatcgcctta cgccaacatg
      661 caaggcatga tcgcaacgcc gaatgtcgac atcgcatcgc aaatcgttgc caagatcgag
      721 gcggtaaaca gttttcgggc gaacttggcc gtgtataaga ccgcttctcg tctatataag
      781 tccctgctcg acatcgcgta gcagcagcgg actctacaaa ctgtttgcct cgcccagcgc
      841 cggcaacggc gtaaaggcct gcgccgcatt ggccgccagt ttcgcttcga caggattgag
      901 ctgcccgcgc aggacttccg cccgcgcttt cgacggcgca tcgcccgcca atcccgcgat
      961 gccgtaccat ttcaaggcct ggcgcagatc ctgcggcacg ccctcgccgc gctcatacag
     1021 cacggccaga tcgaaggcgc tgtcgacata gccgcgctcg gccgcgcggg tgaaccattc
     1081 caccgccttg gcatcgtctt tcatggtgcc caacccttgc gcataggcaa tgcccagatt
     1141 gtgcatcgcc ttgagattgc ccttggccgc cgccgcggcg aaccaggcaa aggcgcgctg
     1201 cggatcggcc ggcacatgtt cgccctgctg gtacagcgcc cccagcagat actgcgccac
     1261 cggctggccc tcgcgcgccg ccacgatgct ccagcgcagc gctgtaacgg gatcgctggc
     1321 cacgccttgg ccgcgcagat aggccagcgc cagcctggct tgcgcgcgcg catccccggc
     1381 atcggccagg gcaatggtgc gggccagcgc accgccggcg acatgacgct gcgtgacacc
     1441 gctgccttgc caggccggct gcgtcgcgct ggcggtattg cccaaggtca acccaatgca
     1501 aagaaacagc accaccagcg acaacgcccc gatcgccagc cagcgtgccc gcacagtctt
     1561 gtccagtgac ggctttttcg gctcggcggc aatggcggcc gcggcacgcg ccttgtcgcg
     1621 ggcgctttgc aacacatcgg ccatctcctc cttggagatg gtgagcaccg gcaacggcgc
     1681 cagcgacaat ggttccggga cgggcttctt ttctgcttcc ggcgcggcga ctacttcttc
     1741 cgctgccggc gcctcaacag gcaattgtgg cactgcggat tctgccggct ttacagttgc
     1801 gaatatggac aaagaggcag gcgcaccctg ccccagcgcc gccaaccgct cctccagttg
     1861 cgcgatggcg cgggcctgca gctgcgccgt ggtctcggcc ctggcttcca gcgcgttcaa
     1921 ggcgcgttca aagaccctaa ggcggcgctc gagccaagcg tcgggtgtgg aaacggacga
     1981 ttcgggcgtg acgtccgcct tagagactgg tgcgggcgcc gcagcggcat gttccacggg
     2041 cgccgcaggt tccaccggcc cgggatgatc atgcatcagc gccgccatca gcgcggt
//
LOCUS       DATMDK010000188         4186 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1464515,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000188 DATMDK010000000
VERSION     DATMDK010000188.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 4186)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4186)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4186
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1464515"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..217)
                     /locus_tag="VNN98_03570"
     CDS             complement(<1..217)
                     /locus_tag="VNN98_03570"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase family protein"
                     /protein_id="HWM61200.1"
                     /translation="MPGDAIGGAMAAAAAATSLAELQAALEAFEGCALKRTAANTVFA
                     DGVAAGRVMFIGEAPGRDEDRIGKPFVG"
     gene            503..2155
                     /locus_tag="VNN98_03575"
     CDS             503..2155
                     /locus_tag="VNN98_03575"
                     /EC_number="1.5.5.1"
                     /inference="COORDINATES: protein motif:HMM:NF017038.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004174 -
                     electron-transferring-flavoprotein dehydrogenase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0022900 - electron transport chain
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="electron transfer flavoprotein-ubiquinone
                     oxidoreductase"
                     /protein_id="HWM61201.1"
                     /translation="MAEAPPIRESMDYDVVIVGGGPAGLAAAIRLKQLDMEISVCVLE
                     KGSEIGAHILSGAVLDPKALNELIPDWKDKGAPLDTPVSDDRFCFFTKGGAFAIAHFL
                     FPPLMSNRGNYIVSLSTLCKWLGQQAEALGVEIYPGFPAHDLIVEDGAVKGVITGDLG
                     VAKDGHRKDSYTPGMELRGKYTLFAEGARGSLSKILGAKFGLQEGRQPQKFGIGLKEL
                     WELPAGQHKKGLVLHGMGWPLDNETGGGLFMYHWGDNFCSVGFVVHLNYKNPWLDPFG
                     EFQRAKTHPAIAKILTGGKRIGYGARAITEGGFQSVPKLSFPGGVLIGCAAGFVNLPR
                     IKGSHNAMKTGMLAAEAAAAALKAGRAGDMLSDYDAAYAKSWVARDLKLVRNAKPLWS
                     KLGTLLALPFIGLDLWTNSLFGLSLFGTLGHGEPDFATLRPAKVSPKIAYPRPDGHLT
                     FDRLSSVFLSSTNHEEDQPVHLVLKDPAIPISLNLPEYAEPAQRYCPAGVYEVIQESS
                     GPRFQINAQNCVHCKTCDIKDPSQNINWVTPEGGGGPNYANM"
     gene            2163..3842
                     /locus_tag="VNN98_03580"
     CDS             2163..3842
                     /locus_tag="VNN98_03580"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HWM61202.1"
                     /translation="MRRIAPLIALLLAGCATNTALPVHSDSDKASEAFSTYLSARFAA
                     GEHDLPQAARYYGQALANDPGNPSLLALSFFYSTTSGDFDAAGKYAQAVTAATPDDRA
                     ARLALAVIGFKHKDYAEVRKQLSLSAKGPFTVLTLSLFDAWAAAAQHDTAGMQKDLQA
                     LVEQKGAESMAAFHTALIQDYLGNGPAADAAYKKALASNAPTPRVLEAYGRFLERAGK
                     GEEAAKLYQSHMNEGGLASVTQPGLARIAAGQKPDALIRTPADGAAEALFGIAASLTD
                     TQSADVSILYLRMALYLRSDLGLAQVLLADRFESLHKYDAAITIYHGIEAASPYFRMA
                     QVQAALDEQRLSKNDAAIADLKKLLAADPKDSESWVALGDTYRASEKFADSVDAYDRA
                     EKLIGHPAKRDWPMFYARAMAKEKLKRLDESEADIQAALKLSPEQPELLNYLGYSWVD
                     RGRNIPTALTMLEKARALRPYDGYIVDSVGWAYYQLGRYDDAAKTLEAAVLLVPGDPT
                     INDHLGDALWRAGRHIDARFQWNHAITFSDNDTDKAAIERKLKTGLSEKPA"
     gene            3886..>4186
                     /locus_tag="VNN98_03585"
     CDS             3886..>4186
                     /locus_tag="VNN98_03585"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61203.1"
                     /translation="MSGSEELRSAVPPGRATIKEAASAKINLFLHVGDKRADGFHPLQ
                     SLAVFTQAGDALALEPASELSLAVEGPFAKGLDGEGDNLVLRAAKVLQENTLAGAR"
BASE COUNT          786 a         1321 c         1330 g          749 t
ORIGIN      
        1 ggccgacaaa gggcttgccg atacggtctt cgtcgcgccc cggggcttcg ccaatgaaca
       61 tcacccgccc ggccgccacg ccgtcggcga agacggtgtt ggcggcggtg cgcttcaggg
      121 cgcagccttc gaacgcttcc agcgccgcct ggagttctgc caggctggtt gccgccgccg
      181 cggcggccat ggcgccaccg atggcatcgc caggcaccgt tctttgaccc tccccttgag
      241 ggagggtcga aaatgccgaa ggcattttcg gggaggggtc taagccactg acccctcccc
      301 gaagcgctac gcgcttcgac cctccctcaa ggggagggtt ggtttttgcg ataagccggt
      361 tgacgggttc ctccgccatg gcctcgtcgg ccccggcttc caccagccag ttcagggtcg
      421 ttagcgtgtc gttcatcgcc cgatcttagg ctttcggggg cgccccaggc cagttagaaa
      481 agaaccaaca acaaggcgat tcatggccga agcccctccc attcgcgaaa gcatggatta
      541 cgacgtcgtc atcgtgggcg gcgggccggc cgggctggcg gcggccatcc ggctgaagca
      601 gctggatatg gaaatctcgg tctgcgtttt agagaagggc tcggagatcg gggcgcatat
      661 cctgtcaggc gcggtgctcg atcccaaggc gctgaacgag ttgatcccgg actggaagga
      721 caagggcgcg ccgctggaca cgccagttag cgatgaccgc ttctgcttct tcaccaaagg
      781 cggcgccttc gccattgcgc acttcctgtt tccaccgctg atgagcaatc gcggcaatta
      841 catcgtcagc ctgtccactc tgtgcaaatg gctgggccag caggcggaag ccttgggggt
      901 ggaaatctat cccggctttc cggcgcatga cctgattgtc gaggacggcg ccgtgaaagg
      961 cgtgatcacc ggcgatctgg gtgtggccaa ggatggccac cgcaaggaca gctacacgcc
     1021 cggcatggag ctgcgcggca agtacacttt gttcgcggaa ggcgcgcgcg gctcgctgtc
     1081 aaaaatcctg ggcgcgaagt tcggcctgca ggaggggcgc cagccgcaga agttcggcat
     1141 cggcctgaaa gaattgtggg agcttcccgc cgggcaacat aagaagggcc tggtgctgca
     1201 cggcatgggc tggccgctgg acaatgaaac cggcggcggc ctctttatgt atcactgggg
     1261 cgacaatttc tgctctgtcg gttttgtggt gcatctcaat tataaaaatc cctggctgga
     1321 tcctttcggc gaattccagc gcgccaagac ccatcccgcc atcgccaaaa tcctcaccgg
     1381 cggcaagcgc atcggctatg gcgcccgcgc catcaccgag ggcggcttcc agtcggtgcc
     1441 gaaattgtct tttcccggcg gcgtgctgat cggctgcgcc gcgggcttcg tcaacctgcc
     1501 gcgcatcaag ggcagccaca acgctatgaa gaccgggatg ttggcggccg aagcggcggc
     1561 ggcggcgctg aaagcgggcc gggcaggcga catgttgtcg gactatgacg ccgcttatgc
     1621 caaaagctgg gtggccaggg acctgaagct ggtgcgcaac gccaagccgc tctggtcgaa
     1681 gctgggcacc ttgctggcct tgccattcat tggcttggac ctctggacca acagcctgtt
     1741 cggactttcc ctgtttggaa ccctggggca tggggaaccg gatttcgcca ccctgcgccc
     1801 ggccaaagtc agccccaaaa tcgcctatcc ccgccccgac ggccatttga ccttcgaccg
     1861 gctgtccagc gtgttccttt ccagcaccaa tcatgaggaa gatcagcccg tgcatctggt
     1921 gctgaaggac ccggccattc ccatttccct aaatttgccc gagtatgcgg aaccggcgca
     1981 gcgctactgc ccggcgggcg tttatgaagt gatccaggag agttcagggc cgcgcttcca
     2041 gatcaacgcc cagaactgcg tgcattgcaa aacctgcgac atcaaggatc cgtcgcagaa
     2101 catcaactgg gtcacgcccg aaggcggcgg cggtcccaat tatgcgaata tgtaggagaa
     2161 gaatgcgccg tattgctccc ctgatcgccc tgctgctggc cggttgtgcc acgaacacgg
     2221 ctttgccggt ccattccgac tccgacaagg cgtcggaagc cttctccacc tatctgtcgg
     2281 cgcggttcgc ggcgggcgag catgatctgc cccaggcggc gcgctattac ggccaggcgc
     2341 tggccaacga tcccggtaat ccgtcgctgc tggccttgtc cttcttttat tccaccactt
     2401 cgggcgactt cgacgccgcc ggtaaatatg cccaggccgt gaccgccgcc acccccgacg
     2461 accgcgcagc gcggctggcg ctggcggtga tcggtttcaa gcacaaggat tatgccgagg
     2521 tccgcaaaca attgtcgctg tcagccaagg ggcctttcac ggtcttgacc ctgtcgctgt
     2581 tcgacgcctg ggcggcggcg gcccagcacg acaccgccgg gatgcaaaag gacctgcagg
     2641 cgctggtcga gcaaaagggc gccgaaagca tggcggcctt ccacaccgcg ctgatccagg
     2701 actatctggg caacggccct gccgccgacg cggcctataa gaaagcgctg gcctccaacg
     2761 cgccgacgcc gcgggtgctg gaagcctatg gccgcttcct ggagcgggcc ggaaaaggcg
     2821 aggaagccgc caagctgtac cagtcccata tgaatgaagg cggcttggcc agcgtcaccc
     2881 agcccggcct ggcgcgcatc gccgccgggc aaaaaccgga cgcgctgatc cgcactcccg
     2941 ccgatggcgc cgccgaggcg ctgttcggca tcgccgcttc gctgacggat acccaaagcg
     3001 ccgatgtctc tatcctgtac ctgcgcatgg cgctgtatct gcgctccgat ctgggactgg
     3061 cgcaggtgct gctggccgac cgctttgagt ccctgcacaa atacgacgcc gccatcacaa
     3121 tctatcatgg catcgaagcg gcttcgcctt acttccgcat ggcgcaggtg caggcggcgc
     3181 tggacgagca gcggctgagc aagaatgacg ccgccatcgc cgatctcaaa aagctgctgg
     3241 cggcggatcc caaggacagc gaaagctggg tggcgctggg cgacacgtat cgcgccagcg
     3301 agaagttcgc ggacagcgtg gacgcctatg accgtgccga gaagctgatc ggccatcccg
     3361 ccaagcgcga ctggccgatg ttctatgccc gcgccatggc caaggaaaag ctcaagcggc
     3421 tggacgaatc cgaagccgat atccaggcgg cgctgaaact gtcgccggaa cagcctgaac
     3481 tgcttaatta tctgggctat agctgggtgg accgcggccg caatatcccc acggcgctga
     3541 ccatgctgga aaaggcgcgc gccttgcgtc cctatgacgg ctatatcgtg gacagtgtgg
     3601 gctgggctta ttaccagctg ggccgctatg acgacgccgc caagactttg gaggcggcgg
     3661 tgctgctggt gccgggtgat cccaccatca acgatcatct gggcgatgcg ctgtggcgcg
     3721 ccgggcggca catcgacgcc cgcttccagt ggaaccacgc catcaccttc agcgacaacg
     3781 ataccgacaa ggcggcgatc gagcgcaagc tgaaaaccgg cctgagcgaa aagcccgctt
     3841 aagtgatcgt cgcggagcat cggccaggaa cagcgcggag caattgtgag cggtagcgag
     3901 gaattgcgga gcgctgttcc gcccggacgt gcgaccataa aagaagcggc gtctgccaag
     3961 atcaacctgt ttttgcatgt cggcgacaag cgcgccgacg gctttcatcc tttgcagagc
     4021 ctggcggtgt tcacgcaagc aggcgatgcg ctggcgctgg aacctgcatc agaactgtcg
     4081 ctggcggtgg aaggtccctt cgccaagggg ctggacggcg agggcgacaa tctggtgttg
     4141 cgggcggcca aggttcttca agagaatacc ctggcaggcg ctaggt
//
LOCUS       DATMDK010000189         5172 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_332249,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000189 DATMDK010000000
VERSION     DATMDK010000189.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 5172)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5172)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5172
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_332249"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1823)
                     /locus_tag="VNN98_03590"
     CDS             complement(<1..1823)
                     /locus_tag="VNN98_03590"
                     /inference="COORDINATES: protein motif:HMM:NF024753.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-binding-like beta-propeller repeat protein"
                     /protein_id="HWM61204.1"
                     /translation="MHKSFWAGALTLAAAMGAVMAQPADTPVNPFAHDPAAIAAGEKV
                     FNSTCTACHGEGASGGRGPALNSGNFTHGAGDYDLFQTIRSGVPGTQMPSFARLPADD
                     VWRAVTYIKSLSAGKNEVASGNAAAGEALFAGHCTSCHEVNGKGAAIAPDLSDEGAKP
                     LGAIRAGVTHKTPPGFRAPPHFADVTTADGRKVHGFVTTEDSFAIALLVDGKNVVLDK
                     KNVQGIAASRDALPHDLALTPAQADDLVAYLAQQKKRDFAQTAKVVPAPVLTLSRLVN
                     SRAEPQNYLSYWGGYDGHHFSELKQIDTSNVTQLQARWAAALPGASALESLPLVVDGI
                     MYVSGPPGDVYALDAKSGLTLWRFHRKQDVVNPYQINPSNRGVAVLDGRVFFGTLDDN
                     LIALDAHTGRELWEVRVADTLEGFTLTGAPLAVKGKIIMGSSGGEMGLRGFLDAYEPA
                     TGKRLWRFYTTAAPGETGGKSWSGDSWKLGGGGTWLTGSYDPGLHLLYWSIGNPAPSF
                     NQTVRKGDNLFTDSVVALDPDTGKLKWWYQFTPNDSHDWDSEEDLVLADRMVDGKPRK
                     LLLHSDRNGVFYALDRTDGKFLWAKPFVKVTWVTGWDKQGRP"
     gene            2024..3097
                     /locus_tag="VNN98_03595"
     CDS             2024..3097
                     /locus_tag="VNN98_03595"
                     /EC_number="5.1.3.-"
                     /inference="COORDINATES: protein motif:HMM:NF008277.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016857 - racemase and epimerase activity,
                     acting on carbohydrates and derivatives [Evidence IEA];
                     GO_function: GO:0030246 - carbohydrate binding [Evidence
                     IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldose epimerase family protein"
                     /protein_id="HWM61205.1"
                     /translation="MGSAWAGTVDTAIYGATKDGAIVHIFTLTNTHGMRAQVLDLGGI
                     ICDVEAPGRDSKMANVILCQKDLKAIEASGPMSALTGRYANRIGHGFTLDGKHYDLQA
                     NPAGVTLHGGRPGYSTRILTTVKTFQNAKDAGVTLRLVSPDGDQSFPGTLTLDLTYTL
                     TDNNDFRIDYKAVTDKNTVINLTNHTYYNLAGNGSGNVENQVMTVMADRVTPTDANQV
                     PTGELTNVAGTALDFRSPTPIGAHLRSTEPQMLIGRGYDHNYVLRKSKPGALELAVRI
                     TDPISGRTLELSTTEPGVQVYSSNNLNGGAVGPAGTLRATDGLALETQHFPDSPNRPN
                     FPSTELTPGQVFTSTTQMHFTVQ"
     gene            complement(3289..4332)
                     /locus_tag="VNN98_03600"
     CDS             complement(3289..4332)
                     /locus_tag="VNN98_03600"
                     /inference="COORDINATES: protein motif:HMM:NF013429.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIM barrel protein"
                     /protein_id="HWM61206.1"
                     /translation="MTTRRDVMMGGAALAAASAMPAFAADKPKSALGTSQTALGHYMR
                     SLRANGGKIDPIQVVDHVHDLGGGGVQFTVPLDADLKKLRARVEKNGMFIQGDLDLLT
                     RHMNDLPAFEQALKNYKALGADCVRVVCFVGRRYETFASLQAYKDWHVSALASLDACL
                     PVAERVGIPLAMENHKDRAVDEEVEILQKYSSQHLGANVDFGNNVAMCDDPMDVITKL
                     APYAKATHLKNMAVQNYTDGFLLSEVLPEDGFMDIAAMWQVLKKANPAIKPVHEMITR
                     DALKVPVLSDKYWTTWPDRGGKYLADTIRLVNANQSKKPLPVISTLSPEAQAQAEDSN
                     NSRYFDWAKTALA"
     gene            complement(4356..5111)
                     /locus_tag="VNN98_03605"
     CDS             complement(4356..5111)
                     /locus_tag="VNN98_03605"
                     /inference="COORDINATES: protein motif:HMM:NF024950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HWM61207.1"
                     /translation="MKIDLTGKTAVIVGGSGGLGEAMAHTLSGAGAKIVLVGRNQDRL
                     NKVADGLKAKGGVAESFTADVTSESDVAKLAEKVNAKFPKPQILINSAGINIRKSVTE
                     FTLKEWSSVVDSSLVSTFLACNAFVPGMKGTGYGRIINLSSIMAHVSLPNRTAYSSGK
                     AGLLGFTKSLALELAGEGITVNAISPGPFHTEMNLAVINDPEANKLFLTKLPVGRWGK
                     VEEMGALACYLCSELAGFVTGTDILIDGGWTAA"
BASE COUNT          950 a         1661 c         1582 g          979 t
ORIGIN      
        1 ggacggccct gtttgtccca accggtcacc caggtgactt tcacaaaggg tttggcccag
       61 aggaattttc cgtccgtacg gtccagcgca tagaaaacgc cgttgcggtc gctgtgcagc
      121 aatagtttgc gcggcttgcc gtccaccatc cggtcggcca gtaccaggtc ttcctcggaa
      181 tcccagtcat gggagtcgtt gggggtgaac tggtaccacc atttcaattt gccggtgtcc
      241 gggtccagcg ccaccacgct gtcggtgaag agattgtcgc ccttgcgcac cgtctggttg
      301 aaggagggcg cgggattgcc gatgctccaa tacagaagat gcagcccggg atcatagctg
      361 ccggtcagcc aggtgccgcc gccgcccagc ttccagctgt cgcccgacca gcttttgccg
      421 cccgtctcgc caggtgcggc agtggtatag aagcgccaca accgcttgcc ggtggccggt
      481 tcataggcgt cgaggaaacc gcgcaggccc atctcgccgc ccgacgagcc catgatgatc
      541 ttgcccttca ccgccagcgg cgcgccggtc agggtgaagc cttccagcgt gtctgccacg
      601 cgcacttccc acaactcgcg cccggtatgg gcgtccagcg cgatcagatt gtcgtccagg
      661 gtgccgaaga agacgcggcc atccagcacc gccacgccgc gattggaggg attgatctga
      721 tagggattga ccacgtcctg cttgcgatgg aagcgccaca aagtgaggcc ggacttggca
      781 tccagggcat agacgtcacc gggcgggccg gagacataca tgatcccgtc caccaccagc
      841 ggcagcgatt caagtgccga cgcacccggc agggctgcgg cccagcgcgc ctgaagctgc
      901 gtgacgttgg aggtgtcaat ctgcttgagc tcgctgaagt gatggccgtc atagccgccc
      961 caataggaga gatagttctg cggttcggcc cggctgttca ccagccgcga taaggtcagc
     1021 acaggcgcag ggacaacttt ggcggtctgg gcgaagtcgc gcttcttttg ctgcgccaga
     1081 taggctacca ggtcatccgc ctgcgccggc gtcaaagcca agtcgtgcgg cagggcatcg
     1141 cggctggcgg cgatgccctg gacatttttc ttgtccagca cgacattctt gccatccacc
     1201 agcagcgcga tggcgaaact gtcctcggtg gtaacaaagc catgcacttt gcgtccatcg
     1261 gcggtcgtca catccgcgaa atgcgggggc gcacgaaagc cgggcggcgt cttgtgggtg
     1321 acgccggcgc ggatggcgcc cagcggcttg gcgccttcgt ccgacaggtc gggggcgatg
     1381 gcggcgccct tgccgttcac ttcatggcaa ctggtgcaat gaccggcgaa cagcgcttcg
     1441 ccggcggcgg cgttaccgct ggccacttca tttttgccgg cggacaggct tttgatatag
     1501 gtgacggcgc gccagacatc gtcggcgggc agccgggcaa aactgggcat ctgggtgccg
     1561 ggcacgccgc tacggatggt ctggaacagg tcgtaatcgc cggcaccgtg cgtaaagttg
     1621 ccactgttca gggccggccc gcgcccgccg ctggcgcctt cgccatggca ggcggtgcaa
     1681 gtggaattga acaccttctc gcccgccgca atcgccgccg ggtcatgggc aaagggattg
     1741 accggcgtgt cggccggctg ggccatcacc gcccccatcg cggccgccaa ggtcaaggcg
     1801 ccggcccaaa aacttttgtg caacctgtgt ttcatgtgcg cctcgcggcc gctgctgtct
     1861 cgccggcggc ggccgattac ccctatccaa tggcccatcg ggcgcttttt ttgtgggcgg
     1921 aatactatag tgtcacacgc caaagcctag ccaaaaaacg ggcaaaatcg agggaaaaat
     1981 gcgcagcatc gcggcggtca cggctctttt tcttagcgca ctcatgggca gcgcctgggc
     2041 cggcacagtg gatacggcca tctatggcgc caccaaggac ggtgccatcg tccacatttt
     2101 cactttgacc aacacgcacg gcatgcgggc ccaggtgctg gacctgggcg ggattatctg
     2161 tgacgtcgaa gcgccgggcc gcgacagcaa gatggctaac gtcatccttt gccagaaaga
     2221 cctgaaggcg atcgaggcca gcgggccgat gagcgccctg accggccgct atgccaatcg
     2281 catcggccac ggcttcaccc tggacggcaa gcattatgac ctgcaggcca atcctgctgg
     2341 cgtcaccctg catggcggtc gtcctggcta cagcacgcgc atattaacca cggtgaagac
     2401 gttccagaat gccaaggacg caggcgtaac cctgcggctg gtcagcccgg acggcgacca
     2461 gagctttccc ggcaccttga ccctggacct cacctatacc ctgaccgaca acaatgactt
     2521 ccgcatcgac tacaaggcgg tcaccgacaa gaacacggtg atcaatctca ccaaccacac
     2581 ctattacaac ctggcgggca acggttcggg caatgtcgag aaccaggtca tgaccgtgat
     2641 ggccgatcgg gtcacgccca ccgacgccaa tcaggtgccg accggcgagc tgaccaatgt
     2701 ggcgggcacg gcgctggatt tccgcagccc cacgccgatc ggcgcgcatc tgcgttcgac
     2761 cgagccgcag atgctgatcg gccgcggtta tgatcacaat tacgtgctgc gcaaatccaa
     2821 gcccggcgcg ctggagctgg cggtgcggat caccgatccc atcagcgggc ggacgttgga
     2881 actgtccacc accgagccgg gggtgcaggt ctattcgtcc aacaatctga atggcggagc
     2941 ggtaggcccg gcgggcacct tgcgggcgac ggacgggctg gcgctggaaa cccagcactt
     3001 ccccgacagt cccaatcgtc ccaactttcc gtccaccgag ctgacgccgg gtcaggtttt
     3061 cacgtccacc acacagatgc acttcactgt gcaatagcgt gtcatggccc gccaccccgg
     3121 tccgcgcgaa gcgcggccgg agtgtaaact ccgtgcgggc cacccaggtg ggttcgcttc
     3181 gatatcgaag gtttgactgc ggactatctt tcaacatccg cgattggtgt cacctgggcg
     3241 gcccggagtc ccgggccgtg acaataaggg cgcaaagccc caagacgcct acgccaaagc
     3301 cgttttcgcc cagtcgaaat agcgcgaatt attgctgtct tcggcctggg cctgcgcctc
     3361 cggcgacaga gtgctgatca ccggcaaggg cttcttgctc tgattggcgt tcaccagacg
     3421 gatggtatcg gcgagatact tgccgccgcg atcgggccag gtggtccagt atttgtcgct
     3481 cagcaccggc accttcaggg cgtcgcgggt gatcatctca tgcaccggct tgatcgccgg
     3541 gttggccttc ttcagcacct gccacatcgc cgcgatatcc ataaagccgt cctccggcag
     3601 gacctcggac aacaagaacc cgtcggtgta attctgcact gccatgttct tcaagtgcgt
     3661 ggccttggcg taaggcgcca gcttggtgat cacatccatg ggatcgtcgc acatggcgac
     3721 attgttgccg aaatccacat tggcgccgag atgctggctg gaatatttct gcaagatttc
     3781 cacctcctcg tcgacggcac ggtccttgtg gttttccatc gccagtggga tgccgacgcg
     3841 ctcggcgacc ggcaggcagg cgtccagcga ggcaagcgcg ctcacatgcc agtccttgta
     3901 ggcttgcagg ctggcgaaag tctcatagcg ccgcccgacg aagcagacga cgcgcacgca
     3961 atcggcgccc agggctttat agtttttcaa agcctgctcg aaggccggca ggtcgttcat
     4021 atgacgggtg agaagatcga gatcgccctg gatgaacatg ccgttcttct ccactcgggc
     4081 gcgcagcttt ttcaggtcgg catccagtgg cacggtgaac tgcacgccgc cgccgcccag
     4141 gtcatggaca tggtccacca cctggatcgg atcgattttg ccgccattgg cgcgcaggct
     4201 gcgcatataa tgccccagcg cggtctggga cgtgcccagt gccgacttcg gcttatctgc
     4261 cgcaaaggcc ggcatcgccg aggcggccgc cagcgcggct ccccccatca tcacatcacg
     4321 ccgcgtcgtc atgtcgtcct cccgtttttt gaacatcagg cggcggtcca gccgccatcg
     4381 attagaatat cagtgccggt gacaaagccg gccagctcgc tgcacagata gcaggccaac
     4441 gcccccatct cctccacctt gccccagcgg cccaccggca gcttggtcag gaacagcttg
     4501 ttggcttccg gatcgttgat caccgccagg ttcatctcgg tgtggaaagg cccgggcgaa
     4561 atggcgttga cggtgatgcc ttcgcccgcc agctccagcg ctaaggactt ggtgaagccc
     4621 agcagccccg ccttgcccga cgagtaagcc gtgcggttgg gcagcgagac atgcgccatg
     4681 atcgaggaca ggttgatgat gcggccatag ccggtgccct tcatgcccgg cacgaaagcg
     4741 ttgcaggcca ggaaggtact gaccaggctg gaatccacca cgctggacca ttccttgagg
     4801 gtgaactcgg tcacgctctt gcggatattg atgccggcgc tgttgatcag gatctgcggc
     4861 ttgggaaatt tggcgttgac cttctcggcc agcttggcga cgtcgctttc gctggtgacg
     4921 tcggcggtga aactttccgc caccccgccc ttggccttga gtccgtccgc caccttgttc
     4981 agtctgtcct ggttgcggcc caccaggacg atcttggcgc ccgcgcccga cagggtatgg
     5041 gccatggctt cacccaggcc gccgctgccg cccacgatta ccgctgtctt gccagtcaga
     5101 tcaattttca caggtcaggc cttctcgata gggattgcga tttcaacgct tggcgtcggg
     5161 ctcaatgaac ag
//
LOCUS       DATMDK010000190         3169 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_564875,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000190 DATMDK010000000
VERSION     DATMDK010000190.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3169)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3169)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3169
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_564875"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(30..197)
                     /gene="rpmG"
                     /locus_tag="VNN98_03610"
     CDS             complement(30..197)
                     /gene="rpmG"
                     /locus_tag="VNN98_03610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011454349.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L33"
                     /protein_id="HWM61208.1"
                     /translation="MAKPTTAKIRLNSEGGTGFFYVTRKNTRTMTEKFTIKKYDPVLR
                     KHVEFKEGKIK"
     gene            complement(288..2531)
                     /gene="rnr"
                     /locus_tag="VNN98_03615"
     CDS             complement(288..2531)
                     /gene="rnr"
                     /locus_tag="VNN98_03615"
                     /inference="COORDINATES: protein motif:HMM:TIGR02063.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008997 - ribonuclease R activity
                     [Evidence IEA];
                     GO_process: GO:0006401 - RNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease R"
                     /protein_id="HWM61209.1"
                     /translation="MKKTPKNTPALDKARVLELLASGANKRDLAKKLSLKGSDRILLK
                     RILKELQADGAITGSPKRGFTKPGELPEVGIIEITGTDADGETLARPLDWNSNEAPPV
                     IYLMPPKEGGALGLGDRVLARLTKHGESYEARVIRRLERETTTRLIGVLRDAPATGWR
                     LVPINKKERTEYALDKSDLGGAKHNELVAAEPKAGRIAGFARVKVIERIGSMDSPKTI
                     SLIAIHDHGIPTEFPKTVIEEAKAAQPIELRGRTDLRAIPLVTIDPPDARDHDDAIWA
                     GPDEDGANSGGHIVLVAIADVSHYVTPGSALDKEALLRGNSAYFPDRVVPMLPEELSA
                     DLCSLKEGVDRPCLVARMIFDRHGHKKSHVFQRAVMRSAARLTYAQAQAAFDGNPHAE
                     MTATAKKTLADVWAAYQSLTVARGKRDPLDLDLPERRVILGADGKVASIAYRERLESM
                     KLIEEFMVLANVAAAEALEKAKTPLIYRVHDTPSKEKLFAFSDFLRTLNINFAKGQVI
                     QPGTFNRILAGAKGSPHEKVMNDVVLRSQAQAIYDPANIGHFGLNLAKYAHFTSPIRR
                     YADLIVHRALIRAFDLGEGGLTDREMGSLASVAEHITMTERRAMAAERDSTDRYVAAF
                     MEERIGENFDARVTGVTRFGLFVRLAESGAEGLIPIRSLSSGSGGADYFHHDEKRQAL
                     VGQRTRVSYGMGDALAVKLLEAAPLTGGLRFALVDGREEAPRRDRPATGKPGKRPGKN
                     RFRGKKR"
     gene            complement(2538..>3169)
                     /locus_tag="VNN98_03620"
     CDS             complement(2538..>3169)
                     /locus_tag="VNN98_03620"
                     /inference="COORDINATES: protein motif:HMM:NF024761.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="topoisomerase C-terminal repeat-containing
                     protein"
                     /protein_id="HWM61210.1"
                     /translation="KSDVDLEMAIKLLSLPREVGLHPEDSKKISANFGRFGPYVAHDG
                     IYASLPSPEDVFEIGLNHAVTLLAEKKAKGPGRRGAQTLKDLGAAPDGKPIKVLKGKF
                     GPYVSDGETNATLHEGMEPDSVTMEQALALIAERAAKGGKKKKPAKAAKAPKPANTQK
                     ANGAETKPAAKKAKSKTTKKKAAKPAAPGKSQGKPPGKPKAKVPELAGE"
BASE COUNT          494 a          967 c         1006 g          702 t
ORIGIN      
        1 agcagcgaag cggtagggca taaaaagcgc tacttgatct tgccttcctt gaactcgaca
       61 tgcttgcgca gcaccggatc atattttttg atcgtgaact tctcggtcat ggtgcgggtg
      121 ttcttccggg tcacatagaa aaagccggtg ccgccttcgc tgttgaggcg gatcttcgcg
      181 gtggtcggct tcgccatggg acactccaaa aagggcaggt cgagaggggc ggtagatggc
      241 ttaccggccc cagccctgtc aaggacttag gccgaaaatc ccggttttca gcgcttttta
      301 ccccgaaaac ggttcttgcc gggccgtttt ccgggcttgc cggtggctgg acggtcccgc
      361 cggggggctt cctcgcggcc gtccaccagc gcgaatctca ggcccccggt caggggcgcg
      421 gcctccagca gcttcaccgc cagcgcgtca cccatgccgt aactcacccg cgttcgctgg
      481 ccgaccaggg cctggcgctt ttcgtcatga tggaaatagt cggcgccccc acttccggaa
      541 gaaaggctgc ggatggggat caggccttcc gcgcccgact ccgccaggcg gacgaacagg
      601 ccgaagcggg tgacgccagt gactctggcg tcgaaattct cgccgatccg ctcttccatg
      661 aaggcggcga catagcggtc ggtggaatcg cgctccgccg ccatggcgcg gcgctcggtc
      721 atggtgatgt gctcggccac cgaagccagg ctgcccatct cgcggtcggt caatccgcct
      781 tcgcccagat cgaaggcgcg gatcaaggcg cgatgcacga tcaaatcggc atagcggcgg
      841 atgggcgaag tgaagtgggc gtatttggcc aggttcaacc cgaaatggcc gatattcgcc
      901 gggtcgtaaa tcgcctgcgc ctggctgcgc agcaccacgt cgttcatcac cttttcgtgc
      961 gggctgccct tggcgcctgc cagaatgcgg ttgaaggtgc cgggctgaat cacctgaccc
     1021 ttggcgaaat tgatattgag ggtgcgcagg aaatcggaaa aagcgaacag cttttccttc
     1081 gagggcgtat cgtggacgcg gtagatcagc ggcgtcttgg ccttttccag cgcctcggcg
     1141 gccgcgacat tggccagcac catgaactcc tcgatcagtt tcatggattc cagccgctcg
     1201 cgataggcga tggaggcgac cttgccatcc gcgcccagga ttacgcggcg ctcgggcagg
     1261 tccaggtcga ggggatcgcg cttgccgcgc gccacagtga gggattggta cgccgcccac
     1321 acatcggcca gagtcttctt cgccgtcgcc gtcatctcgg catggggatt gccgtcgaac
     1381 gcggcttgcg cctgggcata ggtcagccgt gccgccgagc gcatcactgc gcgttggaag
     1441 acatgactct tcttgtggcc gtgacgatca aagatcatgc gcgccaccag gcagggtcgg
     1501 tccacgcctt ccttcagcga gcagagatcg gcggacaatt cctccggcaa catcggcacc
     1561 acccggtcgg ggaaataggc gctgttgccg cgcagaagcg cttccttgtc cagcgccgag
     1621 cctggcgtga cgtaatggga gacgtcggcg atggcgacca gcacgatatg cccaccggaa
     1681 ttggcgccgt cttcgtccgg tcccgcccat atcgcatcgt catggtcgcg ggcatcgggt
     1741 ggatcgatgg tcaccaatgg gatggcgcgc aggtcggtgc ggccacggag ttctatcggt
     1801 tgcgccgcct ttgcttcctc gatcaccgtc ttgggaaatt cggtgggaat gccgtgatcg
     1861 tgaatggcga tcaagctgat ggtcttgggc gaatccatgc tgccgatgcg ctcgatcacc
     1921 ttgacgcgcg caaaaccggc aatgcggcca gccttgggtt cggccgcgac caattcatta
     1981 tgcttggcgc cgcccaggtc ggatttgtcc agcgcatatt cggtgcgttc ttttttgttg
     2041 atcggcacca ggcgccagcc ggtggcgggt gcgtcgcgca gaacgccgat tagccttgtg
     2101 gtggtttcac gttccagcct gcggatgacg cgggcttcat agctttcgcc gtgctttgtc
     2161 agccgcgcca gcaccctatc gcccaatccc agcgcgccgc cttccttggg cggcatgaga
     2221 tagatgaccg gcggggcctc attgctgttc cagtccagcg gccgggccaa tgtttcgccg
     2281 tcggcatcgg taccggtgat ctcgatgatg ccgacctccg gcaattcacc gggcttggtg
     2341 aagccgcgct tgggcgagcc ggtgatcgct ccgtcggcct gcaattcctt gaggatgcgt
     2401 ttgagcagga tgcggtctga gcctttgagg ctcaattttt tggccaggtc gcgcttgttg
     2461 gcgcctgatg ccagcaattc aagcacgcgc gccttgtcca gggcgggcgt gtttttggga
     2521 gtcttcttca atgggtccta ttcgcctgcc agctcgggca ctttggcctt cggtttcccg
     2581 ggcggcttgc cctgggattt cccaggcgcc gcgggcttgg cagctttctt tttggttgtt
     2641 ttggattttg cttttttggc cgcgggtttc gtttccgcgc cattggcttt ttgtgtgttt
     2701 gccggtttgg gcgccttcgc ggcctttgcc ggctttttct tcttgccgcc cttggccgcg
     2761 cgttcagcga tcagcgccag cgcctgttcc atggtcaccg agtcgggctc catgccttcg
     2821 tgcagggtgg cgttggtttc gccgtcgctg acatagggac cgaacttgcc tttcagcacc
     2881 ttgatcggct tgccatcggg tgccgcgccc agatccttga gggtctgcgc gccgcggcgg
     2941 ccgggcccct tggccttctt ctcagccaac agggtaacgg cgtgattgag gccgatctcg
     3001 aacacgtctt ccggtgaggg cagcgaggca tagatgccgt catgggccac ataaggccca
     3061 aaccgtccga aattggcgct gatcttcttg ctgtcttcgg gatgcaggcc gacttcgcgt
     3121 ggcagcgaca gcagcttgat cgccatctcc aggtccacat cgcttttgt
//
LOCUS       DATMDK010000191         2838 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2372454,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000191 DATMDK010000000
VERSION     DATMDK010000191.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2838)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2838)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2838
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2372454"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..656)
                     /locus_tag="VNN98_03625"
     CDS             complement(<1..656)
                     /locus_tag="VNN98_03625"
                     /inference="COORDINATES: protein motif:HMM:NF012472.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HWM61211.1"
                     /translation="MDYRTLGTSGLKVPVLSFGTGTFGGEGPLFSAWGNSSVEEARRL
                     IDICLEAGVNLFDSADVYSHGAAETVLGAAIKNRRDKVLISTKTSLPMGDGPDDAGSS
                     HSRLLRAVEASLKRLGTDYIDLLQLHAFDAGTPIEETLYTLDLLVRAGKLRYVGASNF
                     SGWQLMKSLGLAERRGWPRYVAHQVYYSLVGRDYEWELMPLGIDQGVGALAWSPLGWG
                     R"
     gene            complement(688..1857)
                     /locus_tag="VNN98_03630"
     CDS             complement(688..1857)
                     /locus_tag="VNN98_03630"
                     /inference="COORDINATES: protein motif:HMM:NF018485.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HWM61212.1"
                     /translation="MPVAVFALTAGAFGIGTTEFVIMGLLLQVAADMHVSVPTAGLLI
                     SGYALGVFVGAPILTLSTRRMLRKAVLLTLMAIFILGNAACALAPNYAALMAARVLTA
                     LAHGTFFGVGSVMAAGLVAEDKRASAIATMFAGLTAATLLGVPFGAWFGLLLGWRAAF
                     WVVAAIGVVAVLILAVFVPGHVGNSEDAVSLRDELAVLAKPQVQLGLAMTVLGFAGLF
                     TVFTYIQPILTRLTGFSQAAVSPILLVFGVGLSFGNIAGGRLADRNLSRALIGTLAGL
                     AIVLVILAPALWIKTSAVLMVGLLGAAAFATVAPLQLRVLEKAGSAGRNLASSLNIAA
                     FNLGNALGAWAGGLTIAQGAGLATLPLVAAAITGLGIVLAAWSLWLDSVPPPPPA"
     gene            1951..>2838
                     /locus_tag="VNN98_03635"
     CDS             1951..>2838
                     /locus_tag="VNN98_03635"
                     /inference="COORDINATES: protein motif:HMM:NF015431.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0001216 - DNA-binding transcription
                     activator activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HWM61213.1"
                     /translation="MPRLDTNRAAEMEVFARVVDLGGFSAAAHEFRLTPSGVSKLVSR
                     LEARLGTRLINRSTRKLQLTDEGREFYDRAVRVLADMDEAERAAAAGAHPRGHLRINS
                     NVVVGLLHVMPLMPLFLAQHPDVTLDIVLSDTVVDLLQERADIAIRVGPLRVSNLVAR
                     KLGSSRMAVVAAPDYLGRHGLPRTPADLAGHKGIGWTFSRSIGGWPFRDGQGVTEVSP
                     PPVVRASDGEAARQLALGGVGLARLALFHVGSDIKAGRLVPVLETFNSGDREDVHAAY
                     LGHSGPLPARVRYAPDRPHE"
BASE COUNT          540 a          916 c          943 g          439 t
ORIGIN      
        1 cggccccagc cgagcgggct ccaggccaac gcaccaacgc cctggtcaat gccgagcggc
       61 atcagttccc attcatagtc gcggccgacc agcgagtaat agacctgatg cgcgacatat
      121 cgcggccagc cgcggcgctc agcgaggccg agcgatttca tgagttgcca gccggagaaa
      181 ttcgaagcgc cgacatagcg aagcttgccc gcgcgcacca gcagatcgag ggtgtaaagc
      241 gtctcctcaa tcggcgtgcc ggcatcgaag gcgtgaagct gcagcaggtc gatataatcg
      301 gtgccgagcc gcttgagtga ggcttcgacc gcgcgcagca ggcggctgtg cgacgaaccg
      361 gcatcgtccg ggccgtcacc catcggcagg ctggtcttgg tcgagatcag caccttgtca
      421 cgccggttct tgatggcggc acccagcacc gtctcggcag cgccatggga ataaacatcg
      481 gcgctgtcga acaggttgac gcccgcctcc aggcaaatat cgatcagtcg ccgcgcctcc
      541 tcgacgctgc tgttgcccca ggcggagaag agcgggccct cgccgccgaa ggtgccggtg
      601 ccgaagctga ggacgggaac ctttagtcct gaagtaccga gagtgcgata gtccatggat
      661 attctccttt tctgtttgct ggctctgtca agcgggtggg ggaggcggaa cactgtcgag
      721 ccacaggctc catgcggcca ggacaatgcc cagacctgtg atcgccgccg ccaccagcgg
      781 tagtgtggcg agcccggcac cctgtgcgat ggtcaagccg ccggcccagg cgcctaacgc
      841 attgccgaga ttaaaagccg caatgttgag gctggaagcg aggttgcgcc ccgctgagcc
      901 cgctttctcc agcacacgca attgcagcgg cgcgacggtg gcgaaggccg ccgcgcccaa
      961 cagtccgacc atcaggacgg cactggtctt gatccatagg gcgggcgcca atatcaccag
     1021 cacaatggcc aggcccgcca aggtgccgat cagggcgcgg gatagattgc ggtccgccag
     1081 ccgtccgccc gcgatattgc caaacgaaag ccctacgccg aacaccagca ggatcggcga
     1141 caccgcggct tgcgaaaagc cggtcaggcg ggtgaggatc ggctggatat atgtgaagac
     1201 ggtgaagagg ccggcgaagc ccagcaccgt cattgccagt ccaagctgca cttgcggctt
     1261 ggccagcact gccagttcgt cgcgcagcga gacggcatct tcactgttgc ccacatgacc
     1321 cggcacgaag accgccagga tcagcacggc caccacgccg atcgccgcca ccacccagaa
     1381 ggcggcgcgc cagcccagca gcaggccgaa ccaggccccg aagggaacgc ccagcaaggt
     1441 ggcggccgtg agcccggcga acatggtggc gatggcggag gcgcgcttgt cctccgccac
     1501 caatccggcc gccatcaccg agccgacgcc aaagaaggtg ccatgggcga gggcggtcag
     1561 gacgcgcgcg gccatcagcg cggcataatt cggcgccagg gcgcaggcgg cgttgcccaa
     1621 gatgaagatc gccataagag tcagcagtac cgccttgcgc agcatccgcc gcgtcgacag
     1681 cgtcaggatc ggcgcgccga caaagacgcc caaggcatag ccggagatca aaagaccggc
     1741 ggtcgggacg ctgacatgca tgtcggccgc cacctgcagc agcaacccca tgatgacgaa
     1801 ttcggtggtg ccgatgccga aggcgccggc ggtgagggca aagacggcga caggcatgtg
     1861 caactccgga gcggaccaga cctatatggc ttgccggacg acgccgaatt aggccgcgac
     1921 aactctattg atttgtgaga tcaattcatc atgccgcgcc tcgacaccaa ccgggccgcc
     1981 gagatggaag tgtttgcccg ggtggtcgat ctgggcggct tcagcgcggc ggcgcacgaa
     2041 ttccgcctga cgccctcggg cgtcagcaag ctggtctcgc ggctggaggc tcgcctcggt
     2101 acccgcctga tcaatcgctc cacccgcaaa ctgcaactga cagacgaggg ccgggagttc
     2161 tatgaccggg ccgtacgggt gctggcggac atggacgagg ccgaacgcgc ggcggcggcg
     2221 ggtgcccatc cgcgcgggca tttgaggatc aacagcaatg tcgttgtcgg tcttctccat
     2281 gtcatgccgc tgatgccgct gtttctggcc cagcatcccg atgtgacgct ggacatcgtc
     2341 ctgtcggata ccgtggtgga tctgcttcag gagagagccg acattgccat ccgggtcggt
     2401 cctctgcgcg tctccaatct ggtggcgcga aagctcggga gcagccgcat ggcggtggtc
     2461 gccgcgccgg attatctggg acgccatggc ctgcccagga cgcccgccga ccttgccggg
     2521 cataagggca tcggctggac tttctcgcgc agcatcggcg gctggccgtt ccgtgacggg
     2581 cagggtgtga cggaagtctc gccgccgccc gtggtacggg caagcgacgg ggaagcggcg
     2641 cgacaactgg ccttgggagg cgtcggcctg gcccgcctgg ctctgttcca tgtcggctcc
     2701 gacatcaaag ccgggcggct ggttccggtg ctggagacgt tcaattccgg cgaccgcgag
     2761 gatgttcatg cggcctatct ggggcatagc ggaccgctgc ccgcgcgcgt tcgctatgcc
     2821 ccagataggc cgcatgaa
//
LOCUS       DATMDK010000192         2484 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_334310,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000192 DATMDK010000000
VERSION     DATMDK010000192.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2484)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2484)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2484
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_334310"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(43..561)
                     /locus_tag="VNN98_03640"
     CDS             complement(43..561)
                     /locus_tag="VNN98_03640"
                     /inference="COORDINATES: protein motif:HMM:NF012521.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HWM61214.1"
                     /translation="MKRLFLLRHAKAQPADGSSEDFDRTLMLSGMQDTGAMARYLRKS
                     DYKIDLILCSSSARTVQTAELMLQELACEIEYRDNLYLAEAGKIAAAVRGAPASIACL
                     MVVGHNPGLEACATLLAREPVRRKERIRHEALEEKFPTCALAILDFDVGRWRDVTQGA
                     GKLAEFVRPKDI"
     gene            658..1851
                     /gene="metZ"
                     /locus_tag="VNN98_03645"
     CDS             658..1851
                     /gene="metZ"
                     /locus_tag="VNN98_03645"
                     /inference="COORDINATES: protein motif:HMM:NF006003.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016835 - carbon-oxygen lyase activity
                     [Evidence IEA];
                     GO_process: GO:0008652 - amino acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="O-succinylhomoserine sulfhydrylase"
                     /protein_id="HWM61215.1"
                     /translation="MATNKKPGKWRKRTIAVRGGTMRSPFQETSEALYMTSGYAYESA
                     EEAEARFKGEIGGYQYSRFGNPTVSMFEERMALLEGAPVGRATATGMAAVAAVFLSSL
                     KTGDHVVAARAMFGSCLHVVEQILPRFGITYTLVDGTDAAAWDAAMTPATKLLFLETP
                     SNPTLSLVDIAAVAKIADKYGARLAVDNAFSSPALQRPLEFGAHIVIHSSTKYIDGQG
                     RALGGVILCQQDFLDDHLQVFLRNTGPSISPFNAWLHLKSLETLELRMKQHCENAQRV
                     ADFLGQQKKVTRVLYPFHPDHPQHNLAKAQMDGGGGVVAFEVTGGKASAFKLANALKV
                     IDISNNLGDAKSLITHPETTTHSKVAPDERASLGITSGLMRISVGLEDADDLCEDLEQ
                     ALKVA"
     gene            1851..2306
                     /locus_tag="VNN98_03650"
     CDS             1851..2306
                     /locus_tag="VNN98_03650"
                     /inference="COORDINATES: protein motif:HMM:NF014608.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OsmC family protein"
                     /protein_id="HWM61216.1"
                     /translation="MAEHRITLHWEKGETPFTYDAYSRNHAITFKNGQETIIASGAPA
                     YKGDASKADPEDLLVAALSSCHMLSFLAICAKKKLTVKSYRDDAVGFLENDSADGKGG
                     KLWMTRVILRPQVVCDADTTTLEQVHHLAHEACFIANSVKTDVTVEPRS"
BASE COUNT          502 a          784 c          743 g          455 t
ORIGIN      
        1 tttttaagtc agtttgtagg taaagcgcag ttcacaatcc catcaaatat ccttgggcct
       61 tacgaactcg gccagctttc cggcgccttg cgtcacgtcg cgccagcgcc cgacgtcgaa
      121 atccaggatg gccagggcac aggtggggaa cttttcttcc agcgcctcgt gccggatgcg
      181 ctccttgcgg cgcaccggtt cgcgcgccag cagggtggcg caggcttcca gcccgggatt
      241 atggcccacc accatcaggc aggcgatact ggcaggggcg ccgcgcaccg ccgccgcgat
      301 cttgcccgct tcggccagat agagattgtc gcgatattcg atttcgcagg ccagctcctg
      361 cagcatcagc tccgcggtct ggacggtgcg cgccgaagag gaacacagga tcagatcgat
      421 tttgtagtcg ctcttgcgca gatagcgcgc catggccccg gtatcctgca tgccgctgag
      481 catcagggta cggtcgaaat cctccgagct gccgtctgcc ggctgagcct tggcatgacg
      541 cagcagaaac aggcgtttca tcgggttgcc ctgccctgcg aatcccgcat aaagcttatg
      601 ttcttgaccc taagggggca accgcgcgac aaaaaccact tgagggatag gacgttaatg
      661 gccacgaaca agaagcccgg aaaatggcgc aaacgcacga ttgccgtgcg gggcggcacc
      721 atgcgctcgc ccttccagga gacgtccgag gccctctaca tgacctccgg ctatgcctat
      781 gagtccgccg aggaggccga ggcccgcttc aagggcgaga ttggcggcta tcaatattcc
      841 cgcttcggca accccaccgt ctcgatgttc gaagaacgca tggcgctgct ggaaggcgcg
      901 cccgtcggcc gcgccaccgc caccggcatg gcagcggtgg cggcagtgtt cctgtcctcg
      961 ctgaagaccg gcgatcacgt cgtcgccgcc cgggcgatgt tcggttcctg tctgcatgtg
     1021 gtggagcaga tcctgccgcg cttcggcatc acctataccc tggtggacgg caccgatgcc
     1081 gccgcctggg acgcggcgat gacaccggcg acaaaattgc tgttcctgga aaccccgtcc
     1141 aacccaaccc tgtcgctggt ggatatcgcc gccgtggcca agatcgcgga taagtatggc
     1201 gcgcggctgg cggtggacaa tgccttttcc agccccgctt tgcagcggcc gctggagttc
     1261 ggcgcccata tcgtgatcca ttcctcgacc aaatatatcg acggccaggg ccgcgccctg
     1321 ggcggcgtca tcctgtgcca gcaggatttt ctggacgatc acttgcaggt cttcctgcgc
     1381 aacaccgggc ccagcatcag ccccttcaat gcctggctgc atctcaagag cctggagacc
     1441 ttggagctgc gcatgaagca gcattgcgag aatgcccagc gcgtggcgga ctttctcggc
     1501 cagcagaaga aggtgacgcg ggtgctctat cccttccacc ccgatcatcc ccagcacaat
     1561 ctggccaagg cgcagatgga cggcggcggc ggcgtggtgg cgttcgaagt gacgggcggc
     1621 aaggcctcgg ccttcaaact ggccaatgca ctcaaggtga tcgacatctc caacaatctg
     1681 ggcgacgcca agagcctcat cacccacccc gaaaccacca cccattccaa ggtggcgccg
     1741 gacgaacgcg ccagcctggg catcacctcc ggcctgatgc gcatttcagt ggggctggaa
     1801 gatgccgatg atctttgtga agacctggaa caagccctga aggtggccta atggccgagc
     1861 atcgcatcac gctgcactgg gaaaaaggcg agacgccttt cacctatgac gcctattcgc
     1921 gcaatcacgc catcaccttc aagaacggcc aggagacgat catcgcctcg ggcgcaccgg
     1981 cctataaagg cgacgccagc aaagctgatc ccgaagacct gctggtggcg gcgctgtcct
     2041 cctgtcacat gctgagtttc ctggccatct gcgccaagaa gaaactgacg gtgaaatctt
     2101 accgggatga tgccgtaggc tttctggaaa atgactcagc cgatggtaaa gggggcaaac
     2161 tatggatgac gcgcgtgatc ctgcggcccc aggtggtatg tgacgccgat accacgaccc
     2221 tggaacaagt ccatcatctg gcgcatgaag cctgctttat cgccaattcc gtgaaaaccg
     2281 acgttaccgt tgaacctcgg agttaacgca agcgaaggtt ccccttcccc ttcgcgtgcg
     2341 tagcacgcaa gaaggggagg tgcccgtagc agcaatttta ttaattgctc gcatccgctc
     2401 gcggggcgct gcgaagggtg aggttggcgg ccaagccaac cgaacgccaa gcaccgcaag
     2461 gtgcgaaggc cggatcggag gggt
//
LOCUS       DATMDK010000193         3663 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_86786,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000193 DATMDK010000000
VERSION     DATMDK010000193.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3663)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3663)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3663
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_86786"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..578
                     /locus_tag="VNN98_03655"
     CDS             <1..578
                     /locus_tag="VNN98_03655"
                     /EC_number="2.6.99.2"
                     /inference="COORDINATES: protein motif:HMM:NF003625.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0033856 - pyridoxine 5'-phosphate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0008615 - pyridoxine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="pyridoxine 5'-phosphate synthase"
                     /protein_id="HWM61217.1"
                     /translation="HISDDDIERLTKALSIPLNLEMAATDEMLTIALKAKPHAACIVP
                     EKREERTTEGGIDSAGQHNRLLPIVSALVKAHIRVSMFIEPDRRQLDASKALGAPVVE
                     LHTGAYANAGLADREQLLLKIREAAAYGDSIGLEVHAGHGLTFDNVKSIAAIPQIREL
                     NIGHFLVGEAIFIGFEASIRRMRSLMDEARP"
     gene            575..973
                     /gene="acpS"
                     /locus_tag="VNN98_03660"
     CDS             575..973
                     /gene="acpS"
                     /locus_tag="VNN98_03660"
                     /EC_number="2.7.8.7"
                     /inference="COORDINATES: protein motif:HMM:TIGR00556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008897 - holo-[acyl-carrier-protein]
                     synthase activity [Evidence IEA];
                     GO_process: GO:0008610 - lipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="holo-ACP synthase"
                     /protein_id="HWM61218.1"
                     /translation="MILGLGNDLIDIRRIEKTIEKHGERFLARVYTDIERAKSDRRAA
                     RAASYAKRFAAKEACAKALGTGLNQGVYWRDMGVVNLPGGKPTMALTGGALKRLEKIT
                     PPGHRAQIDLTITDDFPHAQAIVIISAVKD"
     gene            1042..1806
                     /gene="lepB"
                     /locus_tag="VNN98_03665"
     CDS             1042..1806
                     /gene="lepB"
                     /locus_tag="VNN98_03665"
                     /EC_number="3.4.21.89"
                     /inference="COORDINATES: protein motif:HMM:NF021981.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006465 - signal peptide processing
                     [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase I"
                     /protein_id="HWM61219.1"
                     /translation="MTDTKMAAKQQQGESWGELAKTVIYAGLIAVVIRTFLFQPFNIP
                     SGSMENTLLIGDYLFVEKFSYGYSRYTFPFGAWPLGEKMHGRFLGRQPQRGDVVVFKF
                     PQDNSTDFIKRVIGLPGDTVQMKNDVLYLNGKPVPREKVADFVGSLDGEDGHWTQYRE
                     TLPGGKSYVVIDKTTEGPLDNTELFTVPAGHYFMMGDNRDNSDDSREAVGFVPADNLE
                     GKALFRFFSTDGSARFWEIWKWPFAVRYSRILSLVK"
     gene            1823..2485
                     /gene="rnc"
                     /locus_tag="VNN98_03670"
     CDS             1823..2485
                     /gene="rnc"
                     /locus_tag="VNN98_03670"
                     /EC_number="3.1.26.3"
                     /inference="COORDINATES: protein motif:HMM:TIGR02191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004525 - ribonuclease III activity
                     [Evidence IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease III"
                     /protein_id="HWM61220.1"
                     /translation="MTAKLGHRFQDEALLQRALTHAGANSARSNERLEFLGDRVLALV
                     VSETLYRRYPGEDEGALTRRVHSLVRWEACAKVGEEIGLWDHLVLTRSEAAGGRARGP
                     IVGSALEAVIAALYLDGGMPAARAFIERWWEVMFADPGADVRDAKTRLQEWAQARGKD
                     GGAPVYSLKQQAGPDHAPRFVVEAKVAGFDPMTGEGGSKRQAEQDAAAKLLAAVAPED
                     SL"
     gene            2482..3402
                     /gene="era"
                     /locus_tag="VNN98_03675"
     CDS             2482..3402
                     /gene="era"
                     /locus_tag="VNN98_03675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003521131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase Era"
                     /protein_id="HWM61221.1"
                     /translation="MTTRCGFAAIIGAPNAGKSTLINALVGSKVAIVSPKVQTTRMPV
                     RGIAMAGETQIIFVDTPGIFRPRRRLDRAMVSAAWAGAEDADALLLIVDAADLVADAN
                     SLGARDTRAILEGLKDGKAKKKALILNKIDGMKRTDLLPLVERFHAEGVFEDVFLISA
                     LKGEGVADVASWVAARMPEGHWLYPEDQAADIPSRLLAAEVTREKIYLRLHDELPYAS
                     AVETEKWEDRRDGSVKIDQIIYVQRDGQKAIVLGKGGATIKIIGALAREELETLFGRR
                     VHLFLFVKVREDWAENSEHYKEIGLDFPNE"
BASE COUNT          704 a         1134 c         1191 g          634 t
ORIGIN      
        1 gccatatctc ggacgatgac atcgaacggc tgaccaaggc gctgtccatt ccgctgaacc
       61 tggaaatggc ggcgaccgac gagatgctta ccatcgccct gaaggcgaag ccgcatgccg
      121 cctgcatcgt gccggaaaag cgcgaggagc gcaccaccga gggcggcatc gactcggcgg
      181 gccagcacaa tcgccttctg cctatcgtca gtgcgttggt gaaggcccac atccgcgtct
      241 ccatgttcat cgaaccggac cgccgccagc ttgacgcctc caaggcgctg ggcgcgccgg
      301 tggtggaact gcacactggc gcttacgcca atgccggcct ggcggaccgc gaacagttgc
      361 tgctgaaaat ccgcgaggct gccgcttatg gagacagtat cggtctagaa gtgcatgccg
      421 gccacgggct caccttcgac aatgtgaagt ctatcgccgc catcccgcag atacgcgaac
      481 tcaatattgg ccatttcctg gtcggcgaag cgatcttcat tggtttcgag gcttcgatcc
      541 ggcgcatgcg cagcttgatg gatgaggcgc gtccatgatc ctgggcctcg gcaacgacct
      601 gatcgacatc cgccgtatcg aaaagaccat cgagaaacat ggcgagcggt tcctcgcccg
      661 ggtttacacc gacatcgaac gcgccaagtc cgaccgccgc gcggcgcgcg ccgcctccta
      721 tgccaagcgc ttcgccgcca aggaggcctg cgccaaggcg ctgggaaccg ggctgaacca
      781 gggtgtctat tggcgcgaca tgggggtggt gaatctgccc ggcggcaagc ccaccatggc
      841 attgaccggc ggcgccctga aaagactgga aaaaatcacc ccgccggggc accgcgccca
      901 gatcgacctc accatcaccg acgatttccc gcatgcccag gccattgtca ttatctccgc
      961 ggtcaaagat taacccctaa ctccttgaca gcagggggtt tgcccccctt ttgtcccgcc
     1021 cagaaaatcg gacaagcaca aatgacggac accaagatgg cggccaagca gcaacagggg
     1081 gaatcctggg gggaactcgc caagacggtg atttatgccg gcctgattgc ggtcgtgatc
     1141 cgcaccttcc tgttccagcc cttcaacatt ccctcgggct cgatggagaa tacgctgctg
     1201 atcggcgatt acctgttcgt ggagaaattt tcctacggtt acagccgcta cacctttccc
     1261 ttcggcgcct ggccgctggg cgagaagatg catggccgct tcctgggccg gcagccgcag
     1321 cgcggcgatg tggttgtgtt caaatttccc caggacaatt ccaccgactt catcaagcgg
     1381 gtgatcgggc tgccgggcga tacggtccag atgaagaatg acgtgctcta tctcaacggc
     1441 aagccggtgc cgcgcgagaa ggtggccgac tttgtcggga gcctggacgg cgaagacggc
     1501 cattggacgc agtatcgtga gaccctgccg ggcggcaaaa gctatgtcgt catcgacaag
     1561 accacagaag ggccgctgga caataccgag ctgttcacgg tgccggccgg ccactatttc
     1621 atgatgggcg acaaccgcga caatagcgac gacagccgcg aggccgtggg ttttgtcccg
     1681 gccgacaatc tggagggcaa ggcgctgttc cgcttcttct cgaccgacgg ctcggcgcgc
     1741 ttctgggaaa tctggaagtg gcccttcgcc gtgcgctatt cgcgcatact cagcctggtg
     1801 aaatgacaaa ttgaccgaag cgttgaccgc aaagctcggg cacaggtttc aggatgaagc
     1861 tcttctccag cgcgcgctga cccatgccgg cgccaattcg gcgcgctcca acgagcggct
     1921 ggaattcctg ggcgaccggg tgctggcgct ggtggtgtcc gaaacgctct atcgccgcta
     1981 tccgggcgaa gacgaaggcg cgctgacccg gcgggtgcac agcctggtgc gctgggaagc
     2041 ctgcgccaag gtgggcgagg aaatcgggct gtgggatcac ttggtcctga cgcggtcgga
     2101 ggcggcgggt gggcgcgccc gcggtcccat cgtgggcagc gccttggagg ctgtgatcgc
     2161 ggcgctctat ctcgacggcg gcatgccggc agcacgcgct ttcatcgagc gctggtggga
     2221 agtgatgttc gccgatccgg gcgccgatgt ccgcgacgcc aagacccggc tgcaggaatg
     2281 ggcgcaggcg cgcggcaagg atggcggtgc gccggtctat agcttgaagc aacaggccgg
     2341 tcccgaccat gcgccgcgct ttgtggtgga agccaaagtg gccggcttcg atccgatgac
     2401 aggcgagggc ggttccaaac gccaggccga gcaggacgcg gcggcgaaac tgctggccgc
     2461 ggtcgcaccc gaggatagcc tatgactacc cgctgcggct ttgccgccat catcggcgcc
     2521 cccaatgccg gcaagtccac gctgataaac gcgctggtgg gatcgaaggt cgccatcgtc
     2581 agccccaagg tgcagaccac ccgcatgccg gtgcgcggca tcgccatggc gggcgaaacc
     2641 cagatcatat tcgtcgacac gccgggaatt ttccgccccc gccgccgcct ggaccgcgcc
     2701 atggtgagtg ccgcctgggc cggggcggaa gatgccgatg ccttgctgct gatcgtggac
     2761 gccgccgacc tggtggcgga cgccaacagc ctgggcgcgc gcgatacccg cgccatcctg
     2821 gaagggctca aggacggcaa ggccaagaag aaggcgctga tcctcaacaa gatcgacggc
     2881 atgaagcgca ccgacctgtt gccgctggtg gagcgatttc atgccgaagg cgtgttcgag
     2941 gatgtgttcc tgatctcggc cctgaaaggc gagggcgtgg cggacgtggc cagctgggtg
     3001 gcggcgcgga tgccggaggg gcattggctg tacccggaag accaggccgc cgatattccg
     3061 tcacgcctgc tggcggcgga agtgacgcgc gagaaaatct atctgcgcct gcatgacgaa
     3121 ctgccctatg ccagcgcggt ggaaaccgag aagtgggaag atcgccgaga cggttcggtc
     3181 aagatcgacc agatcatcta cgtgcagcgc gacggccaga aggcgatcgt gctaggcaag
     3241 ggcggcgcca ccatcaagat tatcggcgcc ctggcgcgcg aggagctgga gactttgttc
     3301 ggccgccgcg tacacctgtt cctgttcgtg aaagtgcgcg aggattgggc cgagaatagc
     3361 gagcactata aggaaatcgg cctcgatttc cccaatgaat aaatttgtta tcccggaagc
     3421 cgcggcacgc ggctatccgg gatccaactt cagttggatt ccggctcgcg ccctgcttgc
     3481 gcagggcttg gccggaatga caagttgagg aatggaatgg tccgacgacg ccatagtcct
     3541 ttcttgtcgc gcctttggcg aaagcggcgc cattttggac cttttgaccc gcgaccatgg
     3601 ccgccatgcc ggcctggtgc gcggcggcgc ctcgcggcgg atcaagccga ccttgcagcc
     3661 agg
//
LOCUS       DATMDK010000194         2809 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1697088,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000194 DATMDK010000000
VERSION     DATMDK010000194.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2809)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2809)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2809
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1697088"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..430)
                     /locus_tag="VNN98_03680"
     CDS             complement(<1..430)
                     /locus_tag="VNN98_03680"
                     /inference="COORDINATES: protein motif:HMM:NF012904.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016829 - lyase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrodipicolinate synthase family protein"
                     /protein_id="HWM61222.1"
                     /translation="MSNMSPTEMAKTLAKGLLSFPVTHFDEDFGFAEGPYREHCAWLL
                     SFKRLTGLFAAGGTGEVFSLTPAEIGAVVAAAVKETNGQTPVIAGSGYGTAVAVELAK
                     SAEKAGADGLLLLPPYLMTPSQEGLMAHVEAVCKATGIGVI"
     gene            635..1750
                     /locus_tag="VNN98_03685"
     CDS             635..1750
                     /locus_tag="VNN98_03685"
                     /EC_number="3.1.1.103"
                     /inference="COORDINATES: protein motif:HMM:NF012371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase domain-containing protein"
                     /protein_id="HWM61223.1"
                     /translation="MNRRDILKATGASMIASQSPAQAASGNWDRAKLDQAAAVLDGWI
                     ADGRVQGASLLVTQGQRQFARNFGIAKGTEPVFLLASITKPMTAAAVMSLVDAGELSL
                     DDKAVKFFPAFTGEGRETITIRNLLTHTGGLPDMLADDEGLRERHASLADYREGALKA
                     PLKFPPGTKYSYASMGILLSSEIAQKITGKPIADIVEERVLGPLGMRRTGYGLRGRPN
                     SAAVPSQAAPAMTEAGKKSWESWNWNSEYWRNLGAPWGGALGSAADIARFYREFLDLR
                     GRIMKPATEQLMIVNQSPAGVKASGLGFDLPPGIGAPACGPRTFGHNGSTGTYSWADP
                     DTGTICVVLTTLYEAAVRPHPTHLAGNLVAEAVAPKA"
     gene            complement(1761..2270)
                     /locus_tag="VNN98_03690"
     CDS             complement(1761..2270)
                     /locus_tag="VNN98_03690"
                     /inference="COORDINATES: protein motif:HMM:NF015682.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61224.1"
                     /translation="MTGDRVRSGCRSDGIVYDGAVRDINGLKELPNFIAFVRYYDPSH
                     HFGRIGDEGRPLNSTMVAINSPTRIGHAAVMPGDVVLGRDGGVMFIPPQLAERVVQES
                     ERTRLHDIFGHQRLKEQKYTAGQIGRDWTPEIEADFTQWMKDNIDKLPISHAAVQEFL
                     DYRAKAAKK"
     gene            2237..2740
                     /locus_tag="VNN98_03695"
     CDS             2237..2740
                     /locus_tag="VNN98_03695"
                     /inference="COORDINATES: protein motif:HMM:NF024771.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enolase C-terminal domain-like protein"
                     /protein_id="HWM61225.1"
                     /translation="MCNQIEPYRPLWVEEPVPSDNVDSMLRIRNNTRVPIAAGENIYT
                     RYGYRPFLEKQALSIAQPDFTKTGGLMEGFKIAAMCETYNVPLAPHGVCTPLGTLGIT
                     HVCAVIPNLLIQEFTQYQEKAFTELCEPVKLDAEGFLSVPDAPGIGIGLNEDAVKERL
                     DPEFKML"
BASE COUNT          530 a          896 c          877 g          506 t
ORIGIN      
        1 cgatcacgcc gatgccagtg gctttgcaca ccgcttcgac atgggccatc aagccttcct
       61 gcgatggcgt catcagataa ggcggcagca gcagcagccc atccgcgccg gccttctcgg
      121 ccgacttggc cagctccacc gcaacagcgg tgccgtagcc gctgcccgcg atcaccgggg
      181 tctggccgtt tgtctctttt accgcggccg cgaccacggc gccgatttcg gcgggggtga
      241 gggaaaagac ttcgccggtg ccgccggcgg caaacaggcc ggtcaggcgc ttgaagctca
      301 gcagccaggc gcaatgttcc cggtaggggc cttcggcaaa accgaagtct tcgtcgaaat
      361 gggtgacggg aaaggacagc aggcccttcg ccaaggtctt cgccatttcg gtgggcgaca
      421 tgttgctcat gacttcaaat tccttgtgca attgcggcta aacgcgtggc gggttttagc
      481 gggtctttgc gccatcggcc aacccaaact ggctatcaac caatgcggtt tttgcatggc
      541 cgtgctagga cttggccaag gatagcgaag gatcggccag gcaagcgaag cgaagccgtc
      601 cggccggccg accaaataaa aatggggaaa ccggatgaac cgcagggaca ttctcaaagc
      661 cacgggggcc agcatgatcg ccagccagtc accggcccaa gccgcatccg gaaactggga
      721 ccgcgccaag ctggaccagg ctgccgccgt cctggacggc tggatcgccg atgggcgggt
      781 gcagggcgcc tctctgttgg tcacccaggg ccagcgccag tttgcgcgca atttcggcat
      841 cgccaaaggc accgaaccgg tgttcctgct ggcctccatc accaagccga tgaccgctgc
      901 ggcggtgatg agcctggtag atgcgggcga actctccctc gacgacaagg cggtcaagtt
      961 cttccctgcc ttcaccggcg agggccgcga gaccatcacc atccgcaatc tgctcaccca
     1021 taccggcggc ttgccggaca tgctggccga tgacgagggc ttgcgcgaac ggcacgcatc
     1081 cctggccgat tatcgcgaag gcgcgctgaa ggcgccgctg aaattcccgc cgggcacaaa
     1141 atattcctat gccagcatgg gcatcctgct gtcgtccgag atcgcccaga agattaccgg
     1201 caagccgatc gccgatatcg tggaggagcg ggtgttgggg ccgttgggca tgcgccgcac
     1261 cggctatggc ttgcgcggac ggcccaatag cgccgcggtg cccagccagg cggcgcccgc
     1321 catgacggag gccggcaaga aaagctggga gagctggaac tggaacagcg aatattggcg
     1381 caatctgggg gcgccctggg gcggcgcgct gggctcggcg gccgacatcg cccgcttcta
     1441 tcgcgaattt ctggacttgc gcggccgcat catgaagccc gccaccgaac agctgatgat
     1501 tgtcaaccaa agcccggccg gcgtgaaagc cagcggcttg ggcttcgatc tgccgcccgg
     1561 catcggcgcg ccggcctgcg gtccgcgcac cttcggccac aatggctcga ccggcaccta
     1621 ttcctgggcc gatcccgaca ccggcaccat ctgcgtggtg ctgactacct tgtatgaagc
     1681 ggcagtgcgc ccgcatccca cccatctggc cggcaacctg gtggcggaag cggtggcgcc
     1741 caaggcctga caaagcctga ttacttcttc gcggctttcg cgcgatagtc gaggaattcc
     1801 tgaaccgccg cgtggctgat cggcagcttg tcgatattgt ccttcatcca ttgggtaaag
     1861 tccgcctcga tctccggcgt ccagtcccgg ccgatctggc cggcggtgta tttctgttcc
     1921 ttcagccgct gatggccgaa gatgtcatgc agccttgtgc gctccgattc ctgcaccacc
     1981 cgttcggcca gttgcggcgg aatgaacatc accccgccgt cgcggcccag caccacatcg
     2041 cccggcatta ccgcggcatg accgatgcgg gtgggactgt tgatggcgac catggtggag
     2101 ttcagcgggc ggccttcgtc accgatgcgg ccgaaatgat gcgagggatc gtaatagcgc
     2161 acaaaggcga tgaagttggg cagctccttc aggccgttga tgtcgcgcac cgccccgtca
     2221 tagacgatgc cgtcagatct gcaaccagat cgaaccctat cgcccgttat gggtggagga
     2281 gccggtgccc agcgacaatg tcgactccat gctgcggatc aggaacaaca cacgcgtgcc
     2341 gatcgccgcg ggcgagaata tctacacccg ctacggctat cgcccgtttc tggaaaagca
     2401 ggcgctgtcc atcgcccaac cggatttcac caagaccggc ggtctgatgg aggggttcaa
     2461 gatcgcggcc atgtgcgaaa cctataacgt gccgctggca ccgcacgggg tctgcacccc
     2521 gttgggcacc ttgggcatca cccatgtctg cgccgtgatc cccaacctct tgatccagga
     2581 attcacccag tatcaggaaa aggctttcac cgaactgtgc gagccggtga agctggatgc
     2641 tgaaggattc ttatcagtgc ccgatgcgcc gggcatcggc atcggcctga acgaggatgc
     2701 ggtgaaggaa cggctggatc ccgaattcaa gatgctgtga cgcgattccc gcgcgggaac
     2761 tttggcgcga tctcgccatg tttccgccgc gggattatac tcctctgtg
//
LOCUS       DATMDK010000195         2979 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_87244,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000195 DATMDK010000000
VERSION     DATMDK010000195.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2979)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2979)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2979
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_87244"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(140..1348)
                     /gene="cfa"
                     /locus_tag="VNN98_03700"
     CDS             complement(140..1348)
                     /gene="cfa"
                     /locus_tag="VNN98_03700"
                     /EC_number="2.1.1.79"
                     /inference="COORDINATES: protein motif:HMM:NF008686.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclopropane fatty acyl phospholipid synthase"
                     /protein_id="HWM61226.1"
                     /translation="MTDPIFAASSSDPLIRPKKEPAGLFSGWRRGFHRPQRIADLFQL
                     ADVAIGGSRPWDIQVHRQRFYRRLLAGGSLALGESYMDGDWDCEALDQFFDRVISNRL
                     GAALGMTLPLALLIVVSRLQNRQTVRRSKQAADVHYDLPVDIFEATFDRRLTGSCGYW
                     ANATTLDAAQDAKLDLVCRKIGLKERDLVLDIGCGWGSFIGYAAERYRAECFGVTVSP
                     VQVDYTKKRYAGLPVHPLLQDYRDYTGPKADHLVSMGMFEHVGSKNYRTYFECARRAI
                     KDDGLFLLHTIWENERYPTIDAWQDKYIFPNGDLPSVGQITTAAEGLFVVEDMHNFGV
                     FYDKTLMAWNGKFQSNRTEMARRHGERFCRMWEYYLLQSAGAFRCRHISVGQFVLSPN
                     GVRAGYRSVR"
     gene            1620..2759
                     /locus_tag="VNN98_03705"
     CDS             1620..2759
                     /locus_tag="VNN98_03705"
                     /EC_number="3.1.4.11"
                     /inference="COORDINATES: protein motif:HMM:NF027980.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ca2+-dependent phosphoinositide-specific
                     phospholipase C"
                     /protein_id="HWM61227.1"
                     /translation="MCDLKASDAALAGPGCARAWFDANLRINEVQSVGTAESYKLLPS
                     GPMMSLIKMGSSADAEALDYDEPPVAAQLTAGARSLEFDIAYDPKGGLYKYPAGSSMA
                     GELVADDYIAAMSVPGFKVIHVLDIDFNSSCVTLTACLKSVAGWSRAHPDHLPVVIGL
                     RSNDDRTPMPGATRPPKFDAAAFDALDAEIRSVFKPEELITPDTVQADYPTLREAVAA
                     HNWPKVGPSRGKVLFLLDNAAQKVALYRGARHSLEGRAMFVNTDAKSPAAAFVTHENP
                     IKEAAAITADVKAGLVVHTFADADTREARKNDTLRRDWAFASGAQMISTDFLVANKRI
                     GKYEVRVPGGHVAQCNVQLAPQRCSGLDVESAGAPDPARPVGHAQ"
BASE COUNT          557 a          933 c          950 g          539 t
ORIGIN      
        1 cgcgaccttc ccgaactgaa gacggtggcg ggccggctga ccttgaagga cagcctgaaa
       61 agcgtcccgc tttcgctgtg gtgcgaacgc cgggaaaagc tggtgtcttt ccgttccgcc
      121 agggcgcagt agcgccccgt cagcgcacgg accggtatcc cgcgcgcacg ccgttcggcg
      181 acagcacgaa ttggcccaca ctgatgtggc ggcagcggaa cgcgcccgcg ctctgcagca
      241 ggtaatattc ccacatccgg cagaagcgct cgccgtgccg gcgcgccatc tcggtccggt
      301 tggattggaa cttcccgttc caggccatca gggtcttgtc gtaaaagaca ccgaaattgt
      361 gcatgtcttc cacaacgaac agtccctcgg ccgcggtggt gatctggccg acggacggca
      421 gatcgccatt gggaaagata tatttgtcct gccaggcgtc gatggtggga tagcgctcat
      481 tctcccatat cgtgtgcaga agaaagaggc cgtcatcctt gatggcgcgg cgggcgcatt
      541 cgaaataggt ccggtaattc ttcgaaccga catgctcgaa catgcccatg gagacgaggt
      601 ggtccgcctt gggcccggta tagtcgcgat agtcctggag caggggatgg accggcaggc
      661 cggcatagcg ctttttggta tagtcaacct gcacgggcga gaccgtgacg ccgaaacatt
      721 ccgcacggta gcgttccgcg gcatagccta tgaaggatcc ccagccgcaa ccgatatcca
      781 ggactaggtc ccgctccttc aggccgatct tgcggcagac aagatcgagc ttggcgtcct
      841 gggccgcgtc cagggtggtg gcgttcgccc aatagccgca gcttccggtc aggcgccggt
      901 cgaatgtcgc ctcgaagata tcgacaggca aatcataatg gacatcggcg gcctgcttgg
      961 accgccgcac cgtctggcga ttctgaaggc gggaaaccac gatcagcagg gcaagcggca
     1021 aggtcatgcc cagcgccgcg ccaagacggt tcgaaatcac cctgtcaaaa aactggtcca
     1081 gcgcttcgca gtcccagtct ccatccatgt aggattcgcc cagcgccagc gaaccgcccg
     1141 ccagcagccg ccggtaaaag cgctggcgat gaacctgaat gtcccagggc cgggacccgc
     1201 cgatggctac gtccgccagc tgaaacaggt cggcaatccg ctggggccgg tggaaaccgc
     1261 gcctccatcc tgaaaacagc cccgccggtt cttttttcgg gcgtatcaga ggatcgctcg
     1321 aactggcggc gaaaatcggg tctgtcatgg atcggactcc accggggaca ctggctgaca
     1381 gcgtatcata gtttctgccg tgggcttaca gcgccgggat agggtcatgg acgccggccc
     1441 gcgatctctt aaccccgtat cagccgacct tgcgtgtgat acgctgacaa tagtatttct
     1501 tgcatctgct ggatactgcg atccgccggg ggccatgctt gcgcgcgttc acgattatag
     1561 ccattgcgtt gccgtgcttt ctcgcaggcc gctccgcaga tggcgcgggc cttccgccgg
     1621 tgtgcgacct gaaggcaagt gatgcggccc tggcggggcc gggatgcgcc cgcgcctggt
     1681 ttgacgccaa tctccggatc aatgaagtgc aaagcgtcgg cacggcggaa agctacaagc
     1741 tgctgcccag tggtccgatg atgtctctta tcaagatggg ttcgagcgcc gatgccgagg
     1801 ctctggacta tgacgagccg cccgtcgcgg cgcagctgac ggcaggggcg cgctccctgg
     1861 aattcgatat cgcttatgac cccaagggcg ggctttacaa atatcccgcc ggctcttcca
     1921 tggcggggga actggtcgcg gacgattata tcgcggcaat gtccgttccg ggtttcaagg
     1981 tcatccacgt actggatata gatttcaact ccagctgcgt cacactgacc gcctgcctca
     2041 agtcggtggc gggctggtcg cgcgcccatc ccgatcacct ccccgtcgtt atcgggctgc
     2101 gcagcaatga cgaccgcaca ccgatgccgg gcgcaacgcg gccgcccaag ttcgacgcgg
     2161 ctgccttcga tgcgctggac gccgaaatcc ggtccgtttt caagccggaa gaactgatca
     2221 cccccgatac ggtgcaagcc gattatccga ccttgcgcga ggcggtcgcc gcacacaatt
     2281 ggcccaaagt cgggccgtcg cggggcaagg ttctattctt gctggacaac gccgcgcaaa
     2341 aagtggcgtt gtatcgcggc gcccgccatt cgctggaagg ccgggccatg ttcgtcaaca
     2401 ccgacgcgaa atcgccggct gctgcctttg tcacacatga aaaccccatc aaggaagcgg
     2461 cggcgatcac cgccgacgtc aaggcggggc tggtggtgca cacttttgcg gatgccgaca
     2521 cgcgggaggc gcgcaagaac gacacgctgc ggcgcgattg ggcctttgcg tcgggcgcgc
     2581 agatgatctc gaccgacttc ctggtcgcca acaagcgcat cggcaagtat gaggttcgcg
     2641 tgccgggcgg ccatgtggcg cagtgcaacg tgcagcttgc gccgcagcgc tgcagcgggc
     2701 tggacgttga gtcggcgggc gcgcccgatc ctgcccggcc tgtggggcac gcacaatgag
     2761 cgggcattgc gggagcagaa tggcaagcgt ataccgttgg ggcaacggtt tcgcactgcg
     2821 tgggggaggg cgaactgtga cacgccttcc gtgcgccttg ctggctttgg cctgcgccct
     2881 gtttctcacg agcgcaggcg cgatggcaca gccgacgaac ccgcctgcgg agcagccggc
     2941 ctcgcagccc gcagcggccg acacggcgag cgattccga
//
LOCUS       DATMDK010000196         5752 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2375486,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000196 DATMDK010000000
VERSION     DATMDK010000196.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 5752)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5752)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5752
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2375486"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1175)
                     /locus_tag="VNN98_03710"
     CDS             complement(<1..1175)
                     /locus_tag="VNN98_03710"
                     /inference="COORDINATES: protein motif:HMM:NF012361.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006418 - tRNA aminoacylation for protein
                     translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I tRNA ligase family protein"
                     /protein_id="HWM61228.1"
                     /translation="MARYNAKESEKHWQAEWDARALFATPGHSDKPKCYVLEMFPYPS
                     GRIHMGHVRNYTMGDVIARFRRAQGYNVLHPMGWDAFGLPAENAARDKGVSPRDWTYE
                     NIAAMRGQLKMMGLSLDWSREFATCDVEYYHQQQKLFVDFYQAGFVYRSEADVNWDPV
                     DMTVLANEQVIDGRGWRSGAAVERRKLSQWFFKITDFADELLQGLDTLDRWPEKVRVM
                     QKNWIGRSEGLRFQFTLSDKTALDVFTTRPDTLFGASFVALSPEHPLAQELAGKDAKL
                     AAFIEECRHIGTAEADIEKAEKKGYDTGLTAAHPFDASWKLPVMVANFVLMGYGTGAI
                     FGCPAQDQRDLDFAHKYKLSVTPVVVPSDADPKTFDVGNQAYTGPGKLANSRFLDGMT
                     "
     gene            complement(1202..1648)
                     /locus_tag="VNN98_03715"
     CDS             complement(1202..1648)
                     /locus_tag="VNN98_03715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017980501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3576 domain-containing protein"
                     /protein_id="HWM61229.1"
                     /translation="MRVLPAFLCALVLAGCGSNDGTKDMDTGTSSIASGSSRMTLGVN
                     SYLWHASLDTLSFLPLVSADPFGGVIISEWYVAPTSPDERLKVTVYIMDRALRADGLK
                     VVVFRQTRSGAVWQDAQPSPDTAHKLEDSILTRARELRLATLGQQG"
     gene            1790..2977
                     /locus_tag="VNN98_03720"
     CDS             1790..2977
                     /locus_tag="VNN98_03720"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="porin"
                     /protein_id="HWM61230.1"
                     /translation="MPVRKIVLLAALTLGLLSAPLLICPARAQDLAPLSWPVGNADLS
                     VAGVAEGTVFNPSPSDGAHVSGMLALDPTLSRRYDNGLSLALAGRFVAADPLSRGRYD
                     GDAIEYLAAAVHTGLGKFEIGLTDGAAYQLSILAPTDPKADEGVALEDPRTSFFRDSN
                     GRAVINMFALRTEVGASSNYAKFAYMTPDLFGLRLAVSFTPTEGKQLPFLNAGPHLPG
                     RQADIWEAALKYQNDVGPVSLTGYAALAEGRAEHKLPGQEGVSDLSAGLRADYPLDDD
                     ITVSLGGSFRQSNAYGFDISQSWQTGVTRAGHVSGMIAYNAWRASLEYGAGTADAVAT
                     SPRLGLTGWEATLVHDIAPSVTLTAGWQKLNYGRDKGLFFNAAPQLKMDVIFMHLKLS
                     TLG"
     gene            complement(2963..3523)
                     /locus_tag="VNN98_03725"
     CDS             complement(2963..3523)
                     /locus_tag="VNN98_03725"
                     /inference="COORDINATES: protein motif:HMM:NF014622.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine phosphate synthase"
                     /protein_id="HWM61231.1"
                     /translation="MTSNLSNHQRHLNPDMPLVLMTDDRSCDWARAARALPRGSMVVV
                     RGRDTKQRLALARQLHGIAPLLIADDPAMAAGIGAAGLHLPETRMKEAAHWRARFPHW
                     IITSSAHSLRALMAAHLLDAVFLSPVFATASHKHARPLTPLRAAFIAARAPVPVYALG
                     GITPRNVARLAPAFSGIAAISALAQG"
     gene            3522..4190
                     /locus_tag="VNN98_03730"
     CDS             3522..4190
                     /locus_tag="VNN98_03730"
                     /inference="COORDINATES: protein motif:HMM:NF013345.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YggS family pyridoxal phosphate-dependent
                     enzyme"
                     /protein_id="HWM61232.1"
                     /translation="MTISQNLADILARIAAARKAAIAPAPQTRLVAVSKTVPETGIRE
                     ALATGQRLFGENRVQEAQGKFPALKSEFPGLELHLIGPLQTNKVKEAVALFDVIQSLD
                     RNKLADALAAERDKSGNCPRLFVQVNTGEEPQKAGVLPHDTANLIAYARKLELPLEGL
                     MCIPPAEDDAAPHFAFLAKLAREHDLAHRSMGMSGDFELAVKFGATHVRVGSAIFGAR
                     AAIE"
     gene            complement(4180..4683)
                     /locus_tag="VNN98_03735"
     CDS             complement(4180..4683)
                     /locus_tag="VNN98_03735"
                     /inference="COORDINATES: protein motif:HMM:NF015679.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L,D-transpeptidase family protein"
                     /protein_id="HWM61233.1"
                     /translation="MDLIVTSDKDGAWLDWGAGKRRCAIGPGGIGIKGGEGDGITPRG
                     SFPIREVFYRADRVKNLQIALPLWKIAKDDGWCDAPEDESYNRLVKLPYRASAENLWR
                     EDHLYDVVAVIGFNDDPVYAGKGSAIFLHYAKPDFSPTAGCVALKREDLVAALEQLEP
                     GDKIIIR"
     gene            complement(4699..5325)
                     /locus_tag="VNN98_03740"
     CDS             complement(4699..5325)
                     /locus_tag="VNN98_03740"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61234.1"
                     /translation="MSVYSPTYHAMVFSQAPATSAGAAPAAAAAADGKPAEQSESFFH
                     HILDVINPLQHLPVIGTIYRAITGEHIGTVEKIAGDALYGGLWGAVASIADVAFEAVT
                     GKSVEDTALAWLKDESKPNIAVARVVAPSITTDGSLPSSDLPDLPALPATTVAANLPN
                     IPNGPDIAALTGALSAKGVDSETAGRALYAYRRSMGMPAPQPVLASVN"
     gene            5473..>5752
                     /locus_tag="VNN98_03745"
     CDS             5473..>5752
                     /locus_tag="VNN98_03745"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61235.1"
                     /translation="MPTRILLAESDDVLRAGLAEQLQREGYDVVAAKDGEAAGLAVRE
                     TFGFAIIGLDGGDHVAAALREQGLGCPVLLLTDGDAPTLQEALVRPFRF"
BASE COUNT         1044 a         1799 c         1849 g         1060 t
ORIGIN      
        1 gtcatgccgt ccaggaaacg cgaattggcc agcttgccgg gaccggtata ggcttggttg
       61 ccgacatcga acgtcttggg atcggcatcg gagggcacca ccaccggcgt caccgaaagc
      121 ttgtatttgt gggcgaaatc cagatcgcgc tggtcttgcg ccggacagcc gaagatcgcg
      181 ccggtgccgt agcccatcag cacgaaattg gccaccatca ccggcagctt ccaactggcg
      241 tcaaaaggat gcgccgccgt gaggccggtg tcatagccct ttttctcggc cttctcgata
      301 tcggcttcgg cggtgccgat atggcggcac tcctcgataa aggccgccag cttggcatct
      361 ttgccggcca gttcctgggc caggggatgt tccggcgaca gcgccacgaa actcgcgccg
      421 aacaaggtgt cgggtcttgt tgtgaaaacg tcgagagccg tcttgtccga cagcgtgaac
      481 tggaagcgca gcccttcgct gcggccaatc cagttcttct gcatgacgcg gactttttcc
      541 ggccagcggt ccagcgtatc caagccctgc agcaattcat cggcgaaatc ggtgatcttg
      601 aaaaaccatt ggctgagctt gcgccgctcc accgctgcgc cgctgcgcca gccgcgcccg
      661 tcgatcacct gctcattggc gagcacggtc atgtccaccg ggtcccagtt cacgtccgct
      721 tcgctgcggt aaacgaaacc ggcctggtag aaatcgacaa acagcttctg ctgctggtga
      781 taatattcca cgtcgcaggt ggcgaattcg cgggaccagt ccagcgacag gcccatcatc
      841 ttgagctgcc cgcgcatcgc cgcgatattt tcgtaagtcc agtcgcgcgg gctcacaccc
      901 ttgtcgcgcg ccgcattctc ggccggcagg ccgaacgcat cccagcccat gggatgcagc
      961 acgttgtaac cctgggcgcg gcggaagcgg gcgatgacat cgcccatggt gtagttgcgc
     1021 acatgcccca tatggatgcg ccccgacgga taggggaaca tctccagcac ataacatttg
     1081 ggtttatcgg aatgccccgg ggtggcgaac agggcgcgcg cgtcccattc cgcctgccag
     1141 tgcttttcgg attccttggc gttgtagcgc gccattgcgc cccatcctta ggcgtaaagc
     1201 ctcagccttg ctggccgagg gtggccaggc gcaactcgcg ggcgcgggtg aggatggagt
     1261 cttccagctt gtgcgcggta tcggggctgg gctgggcgtc ctgccatacc gcgccgctgc
     1321 gcgtctggcg gaacaccacg accttgaggc cgtcggcgcg caaggcgcgg tccatgatgt
     1381 agacggtcac tttcaagcgc tcatccgggc tggtgggcgc gacataccat tccgaaatga
     1441 taacgccgcc gaagggatcg gccgacacca gcggcaggaa ggacaaggtg tccagcgagg
     1501 cgtgccagag ataagagttc acccccaagg tcatgcggga cgaaccgctg gcgatggaac
     1561 tggtaccggt gtccatatcc ttggtgccgt cattcgagcc gcagccggcc aggaccaacg
     1621 cacacagaaa agcaggcaga actcgcatag ggagcgtttt cctttgggac gggcggccag
     1681 cgccaacaaa gggcttatag cggcgggggg cgggctgcgc aacggcgcat ggcttgcgtc
     1741 cgaggagccg gtttggctta ttctgaaagg acttaagagg gtttgcgcat tgcctgtccg
     1801 taagattgtc ctgctggcgg cgctgactct gggcctgttg tccgccccct tgttgatttg
     1861 tccggcccgt gcccaggatt tggcgccctt gtcctggccg gtgggcaacg ccgatttgag
     1921 cgtggccggc gtggccgaag gcaccgtctt caatcccagc ccgtctgacg gcgcccacgt
     1981 cagcggaatg ctggcgttgg accccaccct gtcgcggcgt tatgacaacg gcttgtcact
     2041 ggcgctggca ggtcgcttcg tcgccgccga tcccctgtca cgcgggcgct atgatggcga
     2101 tgccatcgaa tatctggctg cggcagtcca taccggctta ggcaagtttg agatcggcct
     2161 gaccgacggt gccgcttacc agctttccat actggcgccg accgatccca aggcggatga
     2221 gggcgtggcg ctggaagacc cgcgcaccag cttcttccgc gattccaacg gccgggcagt
     2281 cataaacatg ttcgccctgc gcaccgaagt gggagcatcc agcaattacg ccaaattcgc
     2341 ttatatgacc ccggacttgt tcgggctccg gctggccgtt tccttcacgc cgacggaagg
     2401 caagcaattg cccttcctga atgcgggccc gcacctgccc ggccgccagg ctgacatttg
     2461 ggaagcagca ctgaaatacc aaaatgacgt ggggcctgtg tcgctgactg gctacgcggc
     2521 gctggcggaa ggccgtgccg aacataagct gccgggacag gaaggcgtca gcgacttgag
     2581 cgcgggattg cgcgcggact atccacttga tgatgacatc actgtgtcgc tgggtgggtc
     2641 cttccggcaa agcaatgcct atggctttga cattagccag agctggcaga ccggcgtcac
     2701 ccgggccggt catgtctcgg gtatgatcgc ttataacgcg tggcgcgcga gcctggaata
     2761 cggcgccggc acggccgacg cggtagcgac gtcgccacgg ctggggctaa ccggctggga
     2821 agccacgctg gtccacgata tcgcccccag cgtcactctc actgccggtt ggcagaagct
     2881 taattatggt cgcgataaag ggttgttctt caacgcagcg ccgcaattga agatggacgt
     2941 catcttcatg cacctgaaat tgtcaacctt gggctaatgc agagatcgcc gcgatgccgc
     3001 taaaggcggg cgccagccgg gcaacgttgc ggggcgtgat gccgcccagc gcatagaccg
     3061 gtaccggcgc gcgtgctgcg atgaaggcgg cgcgcagcgg cgtcagcgga cgggcatgct
     3121 tgtggctggc agtggcaaag accggcgaca ggaacacagc gtccagcagg tgcgcggcca
     3181 tcagtgcgcg cagcgaatgc gctgacgagg tgatgatcca gtggggaaag cgtgcgcgcc
     3241 aatgcgccgc ctctttcatg cgcgtttccg gcagatgcag ccccgcagcc ccgatccccg
     3301 ccgccatggc cggatcgtcc gcgatcagca acggcgcaat gccgtgcagc tgccgcgcca
     3361 gcgccaggcg ctgttttgtg tcgcggcccc gcaccaccac catgctgcca cgcggcagtg
     3421 cgcgcgctgc ccgcgcccaa tcgcagctgc gatcgtcggt catcagcacc agcggcatgt
     3481 ccggattgag atggcgttgg tgattggata ggttggacgt catgacgatt tcacagaatc
     3541 tcgccgacat tctggcgcgc atcgcggcgg cgcgaaaggc cgccatcgcg cccgcgcccc
     3601 aaaccaggct ggtggcggtg tccaagaccg tgccggaaac gggcatccgc gaagcgctgg
     3661 cgacaggcca acgcctgttc ggcgagaacc gggtgcagga agcgcaaggg aaatttcccg
     3721 ccctgaaaag cgaatttccc ggcctggaat tgcacctgat cggccccttg cagaccaaca
     3781 aagtcaaaga agcggtggca ctgtttgacg tgattcagag tttagaccgg aacaagctgg
     3841 ccgacgccct ggcggcggag cgcgacaaaa gcggcaactg tccgcgcctg ttcgtgcagg
     3901 tcaataccgg cgaggaaccg caaaaggccg gtgtgttgcc gcacgacacc gccaacctga
     3961 tcgcttacgc gcgcaagctg gaattgccgt tggagggatt gatgtgcatt ccccccgccg
     4021 aggacgatgc cgcgccgcat ttcgcctttc tcgccaagct ggcgcgcgag cacgatcttg
     4081 cccatcgcag catgggaatg agcggggatt tcgagctggc ggtgaagttc ggggctacgc
     4141 atgtgcgggt gggcagcgcc atattcggcg cacgcgcggc tatcgaataa tgatcttgtc
     4201 gcccggctcc agctgttcca acgccgccac cagatcttcg cgcttcagcg ccacgcaacc
     4261 cgccgtggga gaaaaatccg gtttggcata gtgcaggaaa atcgcactgc ccttgccggc
     4321 ataaaccgga tcgtcattga atccgatcac cgccaccacg tcataaagat gatcctcgcg
     4381 ccacaaattc tcggcgctgg cgcgataggg cagcttcacc aaccgattgt agctttcatc
     4441 ctccggcgcg tcgcaccagc cgtcatcctt ggcgatcttc catagtggca gcgcgatctg
     4501 gagattcttc acccggtcgg cgcgatagaa gacttcgcgg atgggaaagc tgccgcgcgg
     4561 cgtgatgccg tcgccctcgc cgcccttgat gccgatgccg cccgggccga tggcgcagcg
     4621 tctcttgccc gcgccccagt ccagccaagc gccgtccttg tcagacgtga cgatcagatc
     4681 catgagaact atatagcgtc agttgacgct ggcgagaacc ggctgcggcg cgggcatgcc
     4741 catcgaacgg cgataggcat agagcgcccg gccggcggtt tcactgtcca cgcccttggc
     4801 cgacaaggcg ccggtcagcg cggcgatatc ggggccattg ggaatgttgg gaaggttggc
     4861 cgcgacggtg gtggcgggca gcgcgggcag atcgggcagg tcggaagacg gcagcgatcc
     4921 gtcggtggtg atgctgggcg ccacgacccg ggcgaccgcg atattgggtt tgctctcgtc
     4981 cttgagccag gccagcgcgg tatcctcgac gctcttgccg gtaacggctt cgaacgccac
     5041 atcggcgatc gaagcgaccg cgccccacaa gccgccatac aaggcgtcgc ctgcgatctt
     5101 ctcgacggtg ccgatatgtt cgccggtgat ggcgcgatag atggtgccga tcacgggcag
     5161 gtgctgcagc ggattgatca cgtccagaat gtgatggaag aaactttcgc tctgttccgc
     5221 cggtttgccg tccgccgccg cggcagcagc aggcgccgcc cccgcggacg tcgcaggcgc
     5281 ctgggagaag accatggcgt gataggtcgg gctgtagaca ctcatcgctt ggtttaaagc
     5341 aagcgccgcg ccagggtttt tccgccctat tgctggggtt tcctccgccg gcggacggtt
     5401 gcaaccggca atatttgccg caggcgcgct tcccgcgcta accttcgcca ccccaactct
     5461 ttgaaatgat tcatgccgac tcgaattctt ttggccgaaa gtgacgatgt gctgcgcgcc
     5521 ggcctggccg agcagctgca gcgcgaaggc tatgacgtgg tggcggcgaa ggacggggag
     5581 gccgcaggcc ttgcggtgcg cgagaccttc ggattcgcca ttatcggcct ggatggcggc
     5641 gatcatgtag cggcggcctt gcgcgaacag ggcctgggct gccctgtcct gctgctgacc
     5701 gacggcgacg caccgaccct gcaggaagcg cttgtccggc cgttccgctt tt
//
LOCUS       DATMDK010000197        10126 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2142545,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000197 DATMDK010000000
VERSION     DATMDK010000197.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 10126)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10126)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10126
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2142545"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..380)
                     /locus_tag="VNN98_03750"
     CDS             complement(<1..380)
                     /locus_tag="VNN98_03750"
                     /inference="COORDINATES: protein motif:HMM:NF012334.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HWM61236.1"
                     /translation="MSKKLDGKTALITGAAAGIGRATTELFLAEGAHVIATDRDLKGL
                     DGLAADKHQLDVTDSAAIAALAKKVGKVDVLFNCAGFVENGTILENDDAQWEKSFEIN
                     VYAMARMIKAFLPAMLEAGGGSII"
     gene            complement(422..2488)
                     /locus_tag="VNN98_03755"
     CDS             complement(422..2488)
                     /locus_tag="VNN98_03755"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61237.1"
                     /translation="MRIRCLCLVAFLVGGVCAGAATAAPAPRTMNQVKAGELVIDPPT
                     LINLGFEWVIQGDDNRNAKVEVSYRKKGDKAWKTAMPLLRLQHERVFQGEGIFNVEMP
                     NMFAGSILDLEENTVYEVKLVLSDPDGGGATKTVTVKTRAEPMPAAGGHVYHVYPRDW
                     EGAKEAGSFNDLMCAYNYYCAGGDTVTGGRPRVKAGDIIMVHAGTYRYHPEFYTGDRS
                     INSTTPVEGTYYLFANGTPQKPIVIKAAGDGPVVFDGGGNFNLFNVKAANYNYFEGLT
                     FKNTEIAIWAGTQFQSGSSGLTVKHCRFENINLGIFTNWAGSSNFTILDNTFIGRDDP
                     NYLTGWNGEPWRQLAAQNGRKFPPTLDSYTAVRVYGSGHVMAYNYVANFHDGIDVETY
                     GNPDGNTPDPTAATGPYYPPRKDWRLRPVAIDYYNNYMTNFHDNAFEIDGSMHNIRVM
                     RNMMLNSASHPMCNQPAIGGPIYWIRNIIYHAPGGSTRTSNGAPGMIYLNNTILSETS
                     IRTTSNSHWMNNLMLGENYAPAIFAVNTYTNYTSSDYNGFRVNPGAAVSFEWSSPPFG
                     VAQDFRDLLAAEDGVQTPPDKYLVTRRYVTLAQYSAETHQDSHSVLLDYDIFQHVPML
                     NAKDLGSVQKLYDAKDLDFRLKPASAAVDHGAVIPNVTDGYSGNAPDLGALELGQPMP
                     HYGPRS"
     gene            complement(2501..5368)
                     /locus_tag="VNN98_03760"
     CDS             complement(2501..5368)
                     /locus_tag="VNN98_03760"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HWM61238.1"
                     /translation="MNNLLQKLHLTGSTLAICAASTFVATAAWAQATNNTPVEEVVVT
                     GTSIRGVAPVGSNLTTIGVEDIKATGASVVQGILASSPQLMGLGSSGNGQTGQNAQEA
                     SIHQFGNSASTSTLTLIDGHRVPATGTNHSFVDPNLVPINMLERVEVLADGVSAVYGS
                     DAVAGVVNFITRKHFEGLELTGSASFIDGKQDVSGGFVAGKDWDTGGAIFAYSYVRQG
                     VLLDTARPYTSPNHIAQGGTNFGNFNCDPATLSPSGQALIFTSATSGQTLANTAANSP
                     CSTWAYGSLIPKTVRNNAMIKVRQDFGSDWTLDSEMLYGTRRVSGPTPRGTLSATAFG
                     SGAQANPFFTQPAGYAGGATTQAIKWDADALLGPGAALTNGADTMYADANLEYRFRGW
                     TFDLMALVGRDDSVMGSTGTLNGSVATLALNGTANAGGSLTQVVPNTTLIPLQLPLTA
                     ANALDIWNPAATNRTSAAVIKQLTDNTQSYHVVNGLNQAHLTAQGTVFDLPAGPVKMA
                     VGAESLHNSIFESVAQLQGSGPASNASVFRTWNFSRDIQSVYGEVNIPVVSADQNVPF
                     VQSINVDVSGRFDHYSDFGNTSNPKIAFDWRVDSDLKFRANWSTSFVAAPTDELGADG
                     TWNNTNYQPYPTNSIAVPVALFPLVTQFGLAGCTAASVTCDISTLRGLHITNGNPHQD
                     PSKGRGWSAGFDYAPSYIPGLTFGFTYWSTKIKGGSTGPQIAAISSNASLANLLTFYP
                     ACATPAQISAIAKTLPLTAPLEACTQYIVNTLNSSYLNLHSEGVDSSINYVLPTDSWG
                     TFTAGDAISVFTLFKESLGAAGQEYDVSNTTGANSFPTVGLQMRGNVGWALDAFSAQL
                     FVNYTGSYRNWGSPKNPITTDPVTHNPTGGGDPVKANVTFDVNLAYDFNDGYLGNDQV
                     SLNIRNIFDRDPPFYNSANGYDTNVANPLGRVITLGLTTKL"
     gene            complement(5591..6397)
                     /locus_tag="VNN98_03765"
     CDS             complement(5591..6397)
                     /locus_tag="VNN98_03765"
                     /inference="COORDINATES: protein motif:HMM:NF013757.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IclR family transcriptional regulator"
                     /protein_id="HWM61239.1"
                     /translation="MDKALLALERLGEAGAAGRALARLAAELGLNKGSLHHTLSALRH
                     HGFVEQDNNGNYRLGHGILALADSYLRDESLRSIIHDGLSTLCLRINEICHLGVLIGE
                     DIVYIDKIVPNGAINTWSTVGWRNPALTTALGRAIISQKYVDFQSFCQQFPTPIVKRT
                     ARTRSTLNSLWQELMDARERGFSREEQEYVLGTSCLAVAILRGPKVIGAISMTGPSER
                     MDARREQFLVRALHDSIGPHLPPGLVLQRPVKKASRGAKAQKRSPSRVTR"
     gene            6705..7985
                     /locus_tag="VNN98_03770"
     CDS             6705..7985
                     /locus_tag="VNN98_03770"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HWM61240.1"
                     /translation="MNSRIRYLLIMLIFVVSAVVYIDRSNISIAGTYLAQDYHISKIQ
                     LGWEFSAFLLGYAAFQIPAGWVVGKLGPRKTLTYGLIWWSALSVATALVPPGMTNALW
                     VLIAVRFVLGLGESVAYPSSNQFIAAWFPTQERGKANGWVFGGVGLGSGTAPPLVAFI
                     IYNYGWHAVFYISAVIGLVIAAVWYRLARDTPAEHPSVTAEEKAHILAGMPLKVEGAM
                     PPVPWLKIFTSRDVWGVTLAYVAFGYVAFIFHTWFFIYLKDGRGLDLKSSALLGTLPF
                     IAMTTCCLLGGVISDWLVAHKGQYVGRSLFGAFTLFLSAIFLIIGSHAQDTTVAVLVL
                     AGGAGALYLGQATYWAVAADFGGPFTGVISGLVNMGGQIAGAATASLTPLFASWYGWE
                     TAFYIAAGVCLVCIIPWFFVNPDRRLHIAEEVTA"
     gene            complement(7982..8413)
                     /locus_tag="VNN98_03775"
     CDS             complement(7982..8413)
                     /locus_tag="VNN98_03775"
                     /inference="COORDINATES: protein motif:HMM:NF015862.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme-binding protein"
                     /protein_id="HWM61241.1"
                     /translation="MSDFRISLAQANTVITATFAKGREAGMKPLSCVVVDAGGHVIAF
                     QRQDGTSFLRLEIARGKAAGALALGVNSRRIGEMAAERPSFIASLGHLAAGGLIPVAG
                     GVIVKGPDGQPIGAVGVTGDTSDNDEIAALAGIAAAGLTPL"
     gene            8528..9850
                     /locus_tag="VNN98_03780"
     CDS             8528..9850
                     /locus_tag="VNN98_03780"
                     /EC_number="1.6.5.-"
                     /inference="COORDINATES: protein motif:HMM:NF019604.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HWM61242.1"
                     /translation="MTQGTARKTQIVVVGGGAAGLELATKLGKRFGRNGFDILLVEKN
                     RTHIWKPLLHEVAAGSLDANLDEVGYRSHGHAWGYRFFYGAMEGVEREHRQVLIAPIL
                     DEDGREIMGRHSIRYDYLVLAVGSVSNDFGTKGVAQHCIFLDSRLQADRFRSKLLDHC
                     LRVSRTLSRDPASDAVVRVDIVGGGATGVELAAELYNSAAELRHYGLEVFDESRLKVA
                     LIEAGPRILPALPERLAEAAHKELEALGVRIVTGEQVVEATSDGMLTASGELIKADLR
                     VWAAGVKGPDMLAGLGLEVTRSNQLMVRPTLQTSRDDRIFAIGDCAWFVPQGETKPVP
                     PRAQAAHQMAATAFHNISAMIRGRKLKDFVYHDHGSLVSLSHFSTVGSLMGNLIGGRM
                     AIEGRLARFVYLSLYRMHLIAIHGWLKGLALILVGHVNHIVRPRLKLH"
     gene            9850..>10126
                     /locus_tag="VNN98_03785"
     CDS             9850..>10126
                     /locus_tag="VNN98_03785"
                     /inference="COORDINATES: protein motif:HMM:NF025910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HWM61243.1"
                     /translation="MQTLLDQAVGLHGQGRLAEAERLYAQILAAAPDHADARHMLGVL
                     RAQQGRNAEALDLIAPVVAARPRDGLAMANYGNVLNALGRREEAIHYF"
BASE COUNT         1784 a         3017 c         3290 g         2035 t
ORIGIN      
        1 ttgatgatcg agccgccgcc cgcttccagc atcgcgggca ggaaggcctt gatcatgcgg
       61 gccatggcat aaacgttgat ctcgaacgac ttctcccact gggcgtcgtc attctccagg
      121 atggtgccgt tctcgacaaa accggcacag ttgaacagca catccacctt gccgactttc
      181 ttggccagtg cggcgatggc ggcagaatcc gtcacgtcca gttgatgctt gtcggcggca
      241 agaccgtcca atcctttcag gtcgcggtcg gtggcgatca catgcgcgcc ctcggccagg
      301 aacagttcgg tggtggcgcg gccgatgccg gccgcggcgc cggtaatcag cgcggtcttt
      361 ccgtcaagct ttttggacat aatcttcccg tgatttcgac ttttatggtg atcgcgcctg
      421 gctaggaacg cgggccataa tggggcatcg gctgacccaa ttccagtgcg cccaggtcgg
      481 gcgcattgcc gctatagcca tcggtgacat tggggatcac cgcgccgtgg tccaccgctg
      541 cggaagccgg cttcagccgg aagtccaggt ccttggcgtc atagagcttc tggacggagc
      601 cgagatcctt ggcattcagc atcggtacat gctggaaaat atcatagtcc aacagcacgg
      661 aatggctgtc ctgatgggtc tctgcgctgt attgggccag agtgacatag cgacgcgtca
      721 ccagatattt gtcgggcggg gtctgcacgc cgtcctcagc cgccagcagg tcgcggaaat
      781 cctgggccac gccgaacggc ggcgaactcc actcaaagct caccgccgcg ccgggattga
      841 cgcggaagcc gttgtaatcc gacgaggtat agttggtgta ggtgttgacc gcgaaaatgg
      901 cgggcgcgta attctcgccc agcatcagat tgttcatcca atggctgttg gaggtggtgc
      961 ggatgctggt ctccgacagg atggtgttgt tgagatagat catccccggt gcgccattgg
     1021 aggtgcgggt tgagccgccg ggcgcatgat agatgatgtt gcggatccag tagatcggtc
     1081 cgccaatcgc cggctggttg cacatgggat ggctggccga gttcagcatc atgttgcgca
     1141 tgacgcggat attgtgcatc gaaccgtcaa tctcgaacgc attgtcgtga aagttggtca
     1201 tatagttgtt gtaatagtcg atcgcgaccg ggcgcaggcg ccagtccttg cggggcggat
     1261 aataaggccc cgtggcggcg gtgggatcgg gcgtgtttcc gtccgggttg ccgtaagtct
     1321 ccacatcgat gccgtcatgg aaattggcga cataattgta ggccatgaca tggccgctgc
     1381 cgtagacgcg cacggcggtg taggaatcca aggtgggcgg gaatttccgc ccgttctgcg
     1441 cggcaagctg ccgccagggc tcgccattcc agccggtgag ataattggga tcgtcgcggc
     1501 cgatgaaagt gttgtccaaa atggtgaagt tggacgatcc ggcccagttg gtgaagatgc
     1561 ccagattgat gttctcgaaa cggcaatgct tcactgtcag tccgctggaa cccgactgga
     1621 actgtgtgcc cgcccagatg gcgatttcgg tattcttgaa ggtcaggccc tcgaagtaat
     1681 tgtagttggc cgccttcaca ttgaagagat tgaaattgcc gccgccgtcg aacaccaccg
     1741 gtccgtcgcc ggccgccttg atgacgatag gcttttgcgg cgtgccgttg gcgaacaggt
     1801 aataggtgcc ttccaccggg gtggtggaat tgatgctgcg gtcaccggtg tagaattcgg
     1861 ggtgatagcg gtaggtgccg gcatgcacca tgatgatgtc gccggccttc acgcgggggc
     1921 gtccgccggt caccgtgtcg ccgcccgcgc agtaataatt gtaagcgcac atcagatcat
     1981 tgaaggagcc cgcctccttg gcgccttccc agtcgcgcgg atagacgtga tagacatgac
     2041 cgccggcggc aggcatcggt tcggcgcggg tttttactgt gaccgtcttg gtggcgccgc
     2101 cgccatcggg atcactgagt accagtttca cctcatagac agtgttttcc tccagatcga
     2161 ggatcgagcc ggcgaacatg ttgggcatct cgacattgaa gatgccttcg ccctgaaaca
     2221 cccgctcatg ctgcaggcgc agcagcggca tcgccgtctt ccacgccttg tcgcctttct
     2281 tgcggtaaga cacctcgacc ttggcgttgc ggttatcgtc gccctggatc acccattcaa
     2341 agcccagatt gatcaaggtg ggcgggtcga tcaccaactc gccggccttt acttgattca
     2401 tggtgcgggg cgcgggtgcc gctgttgcgg cacccgcaca aacgcctccc accagaaatg
     2461 ctaccaggca caggcaacga attctcatgg cggtctccct ctacagcttg gtggtcaggc
     2521 ccagcgttat gacacggccc agcgggtttg ccacattggt atcgtagccg ttggcggagt
     2581 tatagaaggg cggatctctg tcgaagatgt tgcggatatt gagcgacacc tggtcattgc
     2641 ccagataccc gtcattgaaa tcataggcga ggttcacgtc gaaggtgaca ttggccttca
     2701 ccggatcgcc gccgccggtc ggattgtgag tcacgggatc ggtggtgatc ggatttttcg
     2761 gcgagcccca gttgcgatag ctgcccgtgt aattcacgaa cagctgcgcg ctgaaagcgt
     2821 ccaaagccca tcccacattg ccgcgcatct gcaggcccac cgtcgggaag ctgttggcgc
     2881 cggtggtgtt cgacacgtca tattcctgac ccgcggcgcc cagcgattcc ttgaacagtg
     2941 tgaaaacgct gatggcgtca cccgccgtga aggtgcccca gctgtccgtc ggaagcacat
     3001 agttgatgct ggagtcgaca ccctcggaat gcaggttgag gtagctcgag ttcagcgtgt
     3061 tcacgatata ctgcgtgcag gcctccagcg gcgcggtcag cggcagggtt ttcgcaatgg
     3121 cgctgatctg cgccggcgtc gcgcaggccg gatagaaggt cagcaaattg gcgagcgatg
     3181 cgttggacga aatggctgcg atctgcgggc cggtcgagcc gcccttgatt ttggtcgacc
     3241 agtaggtgaa cccgaaggtc aggcccggga tgtagctggg cgcataatcg aatccggccg
     3301 accagccccg gcccttgctg ggatcctgat ggggattgcc gttggtgatg tgcaggccgc
     3361 gcaaggtact gatgtcgcag gtgaccgagg ccgcggtgca gcccgccagg ccaaactgcg
     3421 tcaccaacgg gaacagcgcc accggaacgg cgatgctgtt ggtggggtag ggctgatagt
     3481 tggtgttgtt ccaggtgccg tcggcgccca gttcgtcggt cggcgccgcc acgaaggagg
     3541 tggaccagtt ggcgcggaac ttgagatcgc tatccacacg ccagtcgaag gcgatcttgg
     3601 gattgctggt attgccgaag tcgctgtagt ggtcgaaacg tcccgacacg tcgacgttga
     3661 tggattgcac gaacggcaca ttctggtcgg ccgaaaccac aggaatattg acctcaccat
     3721 agacggactg gatatcgcgc gagaaattcc aggtgcggaa caccgacgca ttcgaggcgg
     3781 gcccggagcc ctggagctgg gcgacagatt cgaagatgga gttgtgcaac gactcggcgc
     3841 caacggccat cttgaccggc ccggccggca gatcgaatac cgtgccctgc gcggtcagat
     3901 gtgcctgatt gagaccgttc acgacatggt agctctgggt gttgtcggtc aattgcttga
     3961 tcaccgccgc cgaggtccgg ttggtcgcag ccggattcca aatgtccagc gcgttcgcgg
     4021 ccgtaagcgg aagctgaagc ggaatgagag tggtgttggg aaccacctgg gtcaggctgc
     4081 cgccggcatt ggcggttccg ttcagcgcca gggtggcgac ggagccgttc agggtgcccg
     4141 tgctgcccat cacgctgtcg tcgcggccca ccagcgccat caggtcgaag gtccagccgc
     4201 ggaagcggta ttccaggttg gcgtcggcat acatggtgtc ggcgccgttg gtgagagcgg
     4261 cgcccgggcc cagcagcgcg tcggcatccc atttgatcgc ctgggtggtc gcccccccgg
     4321 catagccggc cggctgggtg aagaagggat tggcctgggc gccggagcca aaggcggtgg
     4381 cggacagtgt accacgcggg gtcgggccgc tgacgcggcg ggtgccgtag agcatctcgc
     4441 tatcaagcgt ccagtcggag ccgaaatcct ggcgaacctt gatcatggcg ttgttgcgga
     4501 cagtcttggg gatcagcgaa ccatacgccc aggtcgagca gggggagttg gcggcggtgt
     4561 tggccagggt ctggcccgag gtcgcgctgg tgaagatcag cgcctggccg gaaggcgaca
     4621 gggtggcggg atcgcaattg aaattgccaa agttggtgcc gccctgggcg atatggttgg
     4681 gactggtata ggggcgcgcg gtatccaaca acacgccctg ccggacatag ctgtaggcga
     4741 agatcgcgcc gccggtgtcc caatccttgc cggccacgaa gccgccgctg acgtcctgct
     4801 tgccgtcgat gaagctggcg ctgcccgtca gttcgaggcc ttcaaaatgc ttgcgggtga
     4861 tgaaattcac cacacccgcc acggcgtcag acccgtaaac cgccgacacg ccgtcggcca
     4921 gcacttcgac gcgctcgagc atgttgatcg gcaccaggtt gggatcgacg aaggaatgat
     4981 tggtgccggt ggccggcaca cggtggccgt cgatcagggt caaggtggag gtcgaggcgc
     5041 tgttgccaaa ctggtgaatg ctggcctcct gcgcgttctg gccggtctgg ccattgcccg
     5101 aactgcccag gcccatcagc tgaggcgagg atgcgaggat gccctgcacc acactcgcgc
     5161 cggtcgcctt gatatcttcg acgccgatcg tggtgagatt ggagcctacc ggcgccacgc
     5221 cgcggatgct ggtgcctgta acgacaacct cttcgacggg cgtattgttt gtggcctgcg
     5281 cccatgcggc ggtggcgacg aatgtgctgg ccgcgcatat agccagtgtc gatccggtga
     5341 gatgaagctt ctgcagcaga ttgttcattg tactttcccc tggtcggcga ccgtaacggt
     5401 cgactttatt atttatgcgc gattggtgcc tttggggttc cgggccgtca atcatccgcg
     5461 cgcatcgcgt ttcaccctgt gaaatgcatc cggtgccgtg caaacggcat tcagactaat
     5521 gttcgcgatg gatcgctgtt tccgcatgac tcgcggaaaa gcgcattgat aattggtcag
     5581 tgcgcgtgtc tcagcgcgtg acgcgcgaag gacttcgctt ctgggccttg gcaccgcgtg
     5641 atgctttttt cactggcctt tgaagtacca gtcccggcgg caaatgcggt ccgatgctgt
     5701 catgcagcgc gcggacgaga aactgttcgc gccttgcatc catgcgttcg gatgggcccg
     5761 tcatgctgat ggcgccgatg actttcggac cgcgcaggat cgccaccgcg aggcaggagg
     5821 tgcccagaac atattcctgc tcctccctgg agaaaccacg ctcgcgcgcg tccatcaact
     5881 cttgccagag cgaattcaat gttgaacggg tgcgcgcggt gcgcttgacg atcggtgttg
     5941 ggaactgctg gcaaaaactt tgaaagtcca catacttctg cgagatgatc gcgcgtccca
     6001 gggcagtggt gagcgcggga ttgcgccagc ccaccgtcga ccaggtgttg atcgccccgt
     6061 tggggacgat cttatcgatg tatacgatat cttccccgat caacacgccc aggtggcaga
     6121 tctcgtttat gcgaaggcag agcgtgctca gaccatcatg gataatgctg cgcaagctct
     6181 catcgcgcag ataggaatcc gccagcgcca ggatgccatg gcccagccgg taattgccgt
     6241 tattgtcctg ctcaacgaag ccgtgatggc gcaaggctga cagcgtgtga tgcagagagc
     6301 ccttattaag accaagttcg gccgccagcc gggcaagcgc acggccggcg gcgcccgcct
     6361 ctcccagcct ttccagggcc aaaagcgcct tgtccacact gccgatgatg cgttgttgag
     6421 ccatccggtc aggaaatccg tgccatagcg cgcgcagtcg aacattgcgc ccagccgaac
     6481 aatgtcagca cgacggatat cgccatatcc attccccttc atctcgcccg gtctcttttt
     6541 ggcccattcg gtctcttgcc ggggcagcgc actatagcgg ctgggcgcgt tcccgtcaca
     6601 gcaggctttg acgaaagtcc cgaactgcgc tttgctgctg ctatatataa tgagtgtggc
     6661 gcccggctcc tgccgcgtgg ccgtgcccga gaggaaacgc cgtgatgaat tcccgcatac
     6721 gctatctgct gatcatgctg attttcgtgg tcagcgccgt ggtctatatc gaccgcagca
     6781 acatctccat cgccggtact tatctcgcgc aggactatca catctccaag attcagctgg
     6841 gctgggagtt ttcggccttc ctgctgggct atgccgcctt ccagattccc gccggctggg
     6901 tggtgggcaa gctgggcccg cgcaagacgc tgacctatgg tctgatctgg tggagcgcgc
     6961 tcagcgtcgc caccgcgctg gtgccgccgg gcatgaccaa tgcgctgtgg gtgctaatcg
     7021 cggtgcgctt cgtcctcggc ctgggcgagt cggtggccta tccctcctcc aaccagttca
     7081 tcgccgcctg gtttcccacc caggaacgcg gcaaggccaa tggctgggtg ttcggcggcg
     7141 tcggcctggg ctcgggcacc gcgccgcccc tggtcgcttt cattatctac aattatggct
     7201 ggcacgcggt gttctatatc tccgccgtca tcggcctggt gatcgccgcc gtctggtacc
     7261 gcctcgcgcg cgacacgccc gccgagcatc catccgtgac ggcggaagaa aaagcccaca
     7321 tcctggccgg catgccgctc aaggtcgaag gcgccatgcc gccggtccct tggctcaaga
     7381 tattcaccag ccgcgacgtg tggggcgtga ccctggccta tgtcgccttc ggctatgtcg
     7441 ctttcatttt tcacacctgg ttcttcatct atctgaagga cgggcgcggt ctggatctca
     7501 agagcagcgc tctgctgggt accctgcctt tcatcgccat gacgacctgt tgtctgctgg
     7561 gcggcgtcat cagcgactgg ctggttgcgc acaagggcca atatgtcggg cgcagcctgt
     7621 tcggcgcctt cacgcttttc ctctcggcga tcttcctgat catcggcagt cacgcccagg
     7681 acacgacggt ggccgtgctg gtgctggccg gtggcgcggg agcgctctat ctgggtcagg
     7741 cgacctattg ggcggtggcg gcggattttg gcgggccctt caccggcgtg atctccggcc
     7801 tggtcaatat gggcggccag attgcgggcg cagccacggc gtcgctgacg cccttgttcg
     7861 cctcctggta tggctgggaa accgccttct atatcgcggc cggtgtgtgc ctggtctgca
     7921 ttatcccctg gttcttcgtg aacccggatc gccggctgca tattgcggaa gaagtgacag
     7981 cctaaagcgg cgtgagcccg gctgcggcga ttccggccag ggccgcgatt tcgtcattgt
     8041 ccgaggtgtc gccggtgacg ccgacggcgc cgatgggctg gccatcggga cctttcacaa
     8101 tcactccgcc tgccaccggg atcaggccgc ctgcggccag gtgccccagc gaggcgatga
     8161 aactgggccg ttccgccgcc atctccccga tgcggcgcga attcaccccc aaggccaagg
     8221 cgcctgccgc cttgccccgg gcgatctcca gccgcaggaa agacgtgccg tcctggcgct
     8281 ggaaggcaat gacatggccg cccgcatcca ccaccacgca gctgagcggc ttcatgcccg
     8341 cctcgcggcc cttggcgaag gtggcggtga tgacggtatt ggcttgcgcc aggctgatgc
     8401 gaaaatcgct cacgggaggc tttctatggc ttcgggccgc agcctgaccg aaaaaacgaa
     8461 gcggggaaag ccgccgcccg gggcgcgaat gcgccccaaa caaaaataat gtgctatctg
     8521 tcgccgcatg acccagggga ccgcccgcaa aacgcaaatt gtcgttgtcg gcggcggcgc
     8581 ggcggggctg gaactggcca ccaagctggg caagcgcttc gggcgcaacg ggttcgacat
     8641 cctgctggtg gagaaaaacc gcacccatat ctggaagccg ctgctgcacg aagtggcggc
     8701 cgggtcgctg gacgccaatc tcgacgaagt cggctatcgc agccacggcc atgcctgggg
     8761 ctatcgcttc ttctatggtg cgatggaagg cgtggaacgc gaacaccgcc aggtgctgat
     8821 tgccccgatc ctggacgagg acgggcgcga gatcatgggc cgccacagca tccgctatga
     8881 ctatctggtg ctggcggtgg gttcggtcag caatgatttc ggcaccaagg gcgtggcgca
     8941 gcattgcatc ttcctggaca gccggctgca ggccgaccgc tttcgctcca aacttttgga
     9001 tcattgcctg cgggtgtcgc gcaccttgag ccgcgatccc gcgtccgacg ccgtggtgcg
     9061 ggtggatatt gtcggcggcg gcgccaccgg ggtcgaactc gccgccgaac tctacaattc
     9121 cgccgccgaa ctgcgccatt acgggctgga agtgttcgac gaaagccggc tgaaggtggc
     9181 gctgatcgag gccgggccgc gcatcctgcc ggcgctgccc gaaaggctgg cggaggcggc
     9241 gcacaaggag ttggaagcgc tgggcgtgcg catcgttacc ggcgagcagg tggtggaagc
     9301 caccagcgac ggcatgctca ccgcctcggg cgaattgatc aaggccgact tgcgggtatg
     9361 ggccgccggg gtgaagggcc ccgacatgct ggcaggccta gggcttgagg tcacgcgcag
     9421 caaccagctg atggtgaggc ccaccctgca gaccagccgc gacgatcgca tcttcgccat
     9481 cggcgactgc gcctggttcg tgccgcaggg cgaaaccaag ccggtgccgc cgcgtgcgca
     9541 agccgcgcac cagatggcgg cgacggcgtt ccacaatatc agtgccatga tccgcgggcg
     9601 gaagctgaag gatttcgtct atcacgatca cggctcgctg gtgtcgctca gccatttctc
     9661 caccgtgggg tcgctgatgg gcaatctgat cggcgggcgc atggcgatcg aagggcggct
     9721 ggcgcgcttc gtctatctct cgctctatcg catgcacctg atcgccattc acggctggct
     9781 caagggcctg gcgctgatcc tggttggcca tgtcaaccac atcgtccggc cgcggctgaa
     9841 gcttcattga tgcagacttt gctggatcag gcggtgggat tgcacggcca gggccggctg
     9901 gccgaggccg agcggcttta cgcgcaaatc ctggcggcgg cgccggacca tgccgacgcg
     9961 cgccacatgc tgggcgtgct gcgggcgcag cagggccgca acgccgaagc gctggacttg
    10021 attgcgccgg tggtggcggc ccgtccgcgc gatggcttgg cgatggccaa ttatggcaat
    10081 gtgttgaacg cattgggtcg ccgggaggag gccatccact atttcg
//
LOCUS       DATMDK010000198         3906 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_785468,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000198 DATMDK010000000
VERSION     DATMDK010000198.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3906)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3906)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3906
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_785468"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..257)
                     /locus_tag="VNN98_03790"
     CDS             complement(<1..257)
                     /locus_tag="VNN98_03790"
                     /inference="COORDINATES: protein motif:HMM:NF025819.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M67 family metallopeptidase"
                     /protein_id="HWM61244.1"
                     /translation="MTKRVDLPAALAEAIRAQAQDANPRECCGLLEGVRGDGGFRVTA
                     LHPVRNLSLEPAHFAMDPQDQFAAQKRARANGRIVIGCYHS"
     gene            complement(287..640)
                     /locus_tag="VNN98_03795"
     CDS             complement(287..640)
                     /locus_tag="VNN98_03795"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61245.1"
                     /translation="MSDNGVSDMPPVSNRPGPKNQTPAYKAAKLAVVILSALIILAVI
                     ALVVGGIAGLGKKSPYRGATATFQLPPGARIIDMQSQPGRLILRVRDAAGEEIDLLDT
                     QDGHLVGQVKATISK"
     gene            651..1643
                     /locus_tag="VNN98_03800"
     CDS             651..1643
                     /locus_tag="VNN98_03800"
                     /inference="COORDINATES: protein motif:HMM:TIGR00005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HWM61246.1"
                     /translation="MENRRAAQAGDEHAGWRLDRFLAASLPDFSRSRLQQLLEVGAVS
                     LGARTIKDANHRVKPGDGFTVTVPPTLPAVPQGQDIPLEVIYEDKELIVINKPAGLVV
                     HPAAGNPDGTLVNALIGHCGTGMLSIGGEARPGIVHRLDKDTSGLLVAAKTERAMASL
                     AKQFANHTIERAYNAVVWGAPRDSAGLIEGQIGRSPFDRKRMAVLRAGGKRAATRYKV
                     LEKFGPADRAAASLIECRLETGRTHQIRVHLTHLGHPLIGDPQYGRARTPPRGKSDAE
                     THAFTVAASFPRQALHAFVLGFQHPSLHKTLRFEAPWPADFAELVEALRGLNKP"
     gene            1731..2618
                     /gene="rpoH"
                     /locus_tag="VNN98_03805"
     CDS             1731..2618
                     /gene="rpoH"
                     /locus_tag="VNN98_03805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017978208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor RpoH"
                     /protein_id="HWM61247.1"
                     /translation="MSSRGLPALSGEAGLSRYLTEIRKFPLLSPEDEYMFAKRWKEHE
                     DPEAARRLVTSHLRLVAKIAMGYRGYGLPVSEIVSEGNVGLMQAVKRFDPDRGFRLAT
                     YAMWWIRASIQEYVLRSWSMVKMGTTAAQKKLFFNLRKAKNNIGAIEEGDLTPEHVAT
                     LTDQLGVSATELTEMNRRLSGGDASLNAPLRSESESEWQDWLADDTVDQETRLAEREE
                     MGNRHELLTGAMKDLTDRERDIIQARRLQDEPATLEELSQKYGVSRERVRQIEVRAFE
                     KLQRGMKAAMNTAALPAPA"
     gene            2758..3591
                     /locus_tag="VNN98_03810"
     CDS             2758..3591
                     /locus_tag="VNN98_03810"
                     /inference="COORDINATES: protein motif:HMM:NF014609.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0016853 - isomerase activity [Evidence
                     IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PhzF family phenazine biosynthesis protein"
                     /protein_id="HWM61248.1"
                     /translation="MTLKIWQIDAFASKPLEGNPAAIVPLENWLEAELMQRIAAENNV
                     AETAFFVKTGAGAYDLRWFAPSREVDLCGHATLASAWIIFHKIDTNLNEVRFATRSGE
                     LVVTRGSAGNVMSLPSANSEPFAAPSGFAEALGKSLNGPAPSELHISAKGGAGAKALI
                     AVWDTPDQVKALDPAADLQEVAMRVGAGSVLATAPGDGKPYDMVSRFFAPYYGVPEDP
                     VTGSAHCALTPFWAKRLGKKQLKARQASARGGDLLCTDDGARTIIQGDCALYLTGEIE
                     I"
     gene            3588..>3906
                     /locus_tag="VNN98_03815"
     CDS             3588..>3906
                     /locus_tag="VNN98_03815"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012792.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HWM61249.1"
                     /translation="MIRIRPGTRADDDALWTILEPTLRAGETYPQPRDISREAALDYW
                     WRPEHAVFVAEDDGGTLVGTYHLKANSGGPAGHVANCGYMTLPQAAGRGIGRMLCLHS
                     LDEA"
BASE COUNT          713 a         1266 c         1248 g          679 t
ORIGIN      
        1 tgggaatgat agcagccgat gacgatgcgg ccgttggcgc gcgcgcgttt ctgcgccgcg
       61 aactggtcct gcgggtccat cgcgaaatgg gcaggctcga ggctgagatt gcgcaccgga
      121 tgcagcgccg tcacccgaaa gccgccatcg ccgcgcacgc cctccagcag cccgcagcat
      181 tcgcgcgggt tggcgtcttg ggcttgtgcc ctgatcgcct ccgccagcgc ggcgggcaga
      241 tcaacgcgct ttgtcattgg cccacttcct tattttgcct acttccctat ttggaaattg
      301 tggccttgac ctgtcccacc agatggccgt cctgggtgtc gagcagatcg atctcctcgc
      361 cggccgcatc gcgcacgcgc aggatcaacc gtcccggctg gctttgcatg tcgatgatgc
      421 gcgcgccggg gggcagctgg aaggtggcgg tggcaccgcg atagggactt ttcttgccca
      481 ggcccgcgat gccgcccacc accagcgcaa tcaccgccag gataatcagg gcagagagaa
      541 taacaacggc cagctttgcc gccttgtagg cgggggtttg gtttttcggc cccggacgat
      601 tagaaactgg cggcatgtcg gacacgccat tatcagacat aaagacctcc ttggaaaatc
      661 ggcgcgccgc ccaggccggc gacgagcatg ccggctggcg gctggaccgt ttcctggcgg
      721 ccagcctgcc cgatttcagc cgctcgcgcc tccagcaatt gctggaagtc ggggcggtgt
      781 cgctgggcgc ccggacgata aaagacgcca accaccgggt caaaccgggc gacggtttca
      841 ccgtcaccgt gccgcccacc ctgccggcag ttccgcaagg ccaggacatc ccgctggaag
      901 tgatttacga agataaggag ctgatcgtca tcaacaagcc ggccgggctg gtggtgcatc
      961 ccgccgccgg caatcccgac ggcactctgg tcaatgccct gatcggccat tgcggcacgg
     1021 gcatgctctc catcggcggc gaggcgcggc ccggcatcgt gcaccggctg gacaaggaca
     1081 cgtccggtct gctggtggca gcgaaaaccg agcgcgccat ggcatcgctt gccaaacagt
     1141 tcgccaacca caccatcgag cgcgcctaca acgccgtggt atggggcgcc ccgcgcgata
     1201 gcgccggcct gatcgaaggc cagatcggcc gcagtccctt cgaccgcaag cgcatggcgg
     1261 tgctgcgtgc cggcggcaag cgggcggcga cgcgttacaa ggtgctggag aaattcggtc
     1321 ctgcggatcg tgccgcggcg tccctgatcg agtgccggct ggaaaccggg cgcacccacc
     1381 agatccgggt ccacctcacc catctgggcc accccctgat cggcgatccg caatatggcc
     1441 gcgcccgcac cccgccccgc ggcaaaagcg acgccgaaac ccacgcgttt acagtggccg
     1501 caagcttccc ccgccaggcc ctgcatgcat ttgtcctggg attccagcac cctagcctgc
     1561 acaagaccct gcgtttcgag gcgccctggc ctgcggattt tgccgaactc gtggaggcct
     1621 taaggggatt gaataagccc tagccaagct tatttcctaa accgctgagg tgttcaggcg
     1681 ttgtcgttct ttcatcttct gaacttcggc ctcggcgcga agggggactt atgagtagtc
     1741 gtggacttcc cgccctgtcg ggcgaagccg gtctgtcgcg gtatctcacc gagatccgca
     1801 agtttccgct gctgtcgccc gaagacgaat acatgttcgc caagcgctgg aaggaacatg
     1861 aagacccgga ggccgcgcgc cgcctggtca ccagccatct acgcctggtc gccaagatcg
     1921 ccatgggcta tcgcggctat ggcttgccgg tgtccgaaat cgtctccgaa ggcaatgtcg
     1981 ggttgatgca ggcggtcaag cgcttcgatc ccgaccgcgg ctttcgcctg gcgacctatg
     2041 ccatgtggtg gatccgcgcc tcgattcagg aatatgtcct gcggtcgtgg agcatggtga
     2101 agatgggcac cacggcggcg cagaaaaagc tgttcttcaa cctgcgcaag gccaagaaca
     2161 atatcggcgc catcgaggaa ggcgatctca cgcccgaaca tgtcgccacc ctgaccgacc
     2221 aactgggcgt ctccgccacc gaactgaccg agatgaaccg ccgcctgtcg ggcggcgatg
     2281 cctcgctcaa cgcgccgctg cggtctgaat cggaaagcga atggcaggat tggctggccg
     2341 acgacaccgt cgaccaggaa acccgcctgg ccgagcgtga ggagatgggc aaccgccacg
     2401 agttgttgac cggcgccatg aaggacctca ccgaccgcga gcgcgacatt atccaggccc
     2461 gccggctgca ggacgagccc gccaccctgg aagagctgtc gcagaaatac ggcgtttccc
     2521 gcgaacgggt acgccagatc gaagtgcggg cctttgaaaa gctccagcgc ggcatgaagg
     2581 cggcgatgaa tacggcggcc ctgcccgcgc ctgcatagcc agcatgcgct ggcgccgctt
     2641 gtggcgatat acgtcttagt ttgtcattcc cgcgaaagcg ggaatccatc ttcttgatcc
     2701 cgctcaaagt tggatgcccg cttgcgcggg catgacaatt cctcggaggg gaacgtcatg
     2761 acgctgaaaa tctggcagat cgacgccttc gccagcaagc cgttggaagg caatcccgcg
     2821 gccattgtgc cgctggaaaa ctggctggag gcggagttga tgcagcgcat cgccgccgag
     2881 aacaatgtcg ccgaaaccgc ctttttcgtg aaaaccgggg cgggggctta cgacctgcgc
     2941 tggttcgcgc cgtcgcgcga agtggatttg tgcggccacg cgacgcttgc cagcgcctgg
     3001 atcattttcc acaagatcga caccaacctg aacgaagtgc gtttcgccac ccgctccggc
     3061 gagttggtgg tgacgcgcgg cagcgcagga aatgtgatgt cgctgccctc ggccaattcc
     3121 gaacccttcg cggccccatc cggtttcgca gaagcgctgg gcaaaagcct gaacggtccc
     3181 gcgcccagcg aattgcatat cagcgccaaa ggcggcgccg gcgccaaggc gctgatcgcg
     3241 gtttgggaca cgcccgatca ggtcaaagca ctggaccccg ccgccgacct gcaggaggtg
     3301 gcgatgcggg tcggtgccgg ctcggtgctg gcgacggcgc cgggcgatgg caagccttat
     3361 gacatggtct cgcgtttctt tgcgccgtat tacggcgtgc cggaagatcc cgtgaccggc
     3421 tcggcgcatt gcgccctcac gccgttctgg gccaagcggc tgggcaagaa acagctcaag
     3481 gcgcggcagg cttcggcgcg cggcggcgat ctgctttgca ccgacgacgg tgcgcgcacc
     3541 atcatccagg gcgactgcgc gctgtatctg accggcgaga tcgagatttg atccgcatcc
     3601 ggcccggcac gcgcgcggac gatgatgcgc tatggacaat tctggagccc acccttcgcg
     3661 ccggcgaaac ctatccgcag ccgcgcgata tcagccgcga agcggcgctg gattattggt
     3721 ggcggccgga gcatgcggtc ttcgttgccg aggatgatgg cggcacactg gtggggacct
     3781 atcacctgaa agccaatagc ggcgggcccg ccggccatgt cgccaattgc ggttatatga
     3841 ccttgccgca ggcggcggga cgaggcatcg gccggatgct gtgcctgcat tcgcttgatg
     3901 aagcca
//
LOCUS       DATMDK010000199         2354 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1468840,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000199 DATMDK010000000
VERSION     DATMDK010000199.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2354)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2354)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2354
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1468840"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..909
                     /locus_tag="VNN98_03820"
     CDS             <1..909
                     /locus_tag="VNN98_03820"
                     /inference="COORDINATES: protein motif:HMM:NF012512.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal-phosphate dependent enzyme"
                     /protein_id="HWM61250.1"
                     /translation="MPVTTPFNKIKHTRDFGATVIQHGQGLAEADAEARRIAGEQGLT
                     FIHPYDDAKVMAGQGTVALEMLEDVPQLDALIVPVGGGGLISGCAIAAKAIKPGIEIF
                     GAQSALYPAMVDAMKGLTPPPAPLVATIAEGIAVKRPGVLTTAICKALVDDIFVVGED
                     EIEHALAMILEIEKTVIEGAAAAGFAALLAHAGQFKARQVGIVMSGGNIDMRLLSNVI
                     LRELTREGRIILLVLQIEDRPGQLADISRIIADAGGNVLEVSHNRMMAGIPAKSATLE
                     LAVEARDTEHAQEIRDRLTAKGFQQA"
     gene            1052..1222
                     /locus_tag="VNN98_03825"
     CDS             1052..1222
                     /locus_tag="VNN98_03825"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61251.1"
                     /translation="MAQLTGVLVTGIVAFGTDLEVYYAVPLGVFAGALAMFFVSLSEA
                     QDTYRARWEQYK"
     gene            complement(1232..2104)
                     /gene="motA"
                     /locus_tag="VNN98_03830"
     CDS             complement(1232..2104)
                     /gene="motA"
                     /locus_tag="VNN98_03830"
                     /inference="COORDINATES: protein motif:HMM:TIGR03818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor stator protein MotA"
                     /protein_id="HWM61252.1"
                     /translation="MLQIGGIVILFACVFGGYLMTGGSLAVVFEAMPHEMLTIFGAAI
                     AAMLIAGSVYNIKKIVGGLGQIISGPRWKPQDFRDLLCLLYLLTKTMKSKGLIALEAH
                     IEKPDDSSIFKRYPRICKDHFALDFICDTLRMMTMSLEDPHQVETAMEKQLEKHHHEA
                     LVGANALQTMADGLPALGIVAAVLGVIKTMGAISEPPEVLGGMIGSALVGTFLGVFLA
                     YGIVGPMSVRLKAVIDEDALFYHVIRDILVAHLHGNAAQVSVEIGRGSVPSEYQPSFL
                     ELETSLNNIPPDSA"
BASE COUNT          453 a          715 c          750 g          436 t
ORIGIN      
        1 atgccggtga ccacgccctt caacaagatc aagcataccc gcgatttcgg cgccaccgtg
       61 atccagcacg gtcagggtct ggccgaagcc gatgccgagg cgcggcgtat cgcgggcgag
      121 cagggcctca ccttcattca tccctatgac gatgccaagg tgatggcggg ccagggcacc
      181 gtggcgctgg agatgctgga agacgtgccg cagctcgacg cgctgatcgt gccggtgggc
      241 ggcggcgggc tgatctccgg ctgcgccatc gcggccaagg cgatcaagcc ggggattgaa
      301 atcttcgggg cgcagagcgc gctttatccg gcgatggttg acgcgatgaa gggcctgacg
      361 ccgccgccgg cgccgctggt ggccaccatc gccgaaggta tcgcggtcaa gcgcccgggg
      421 gtgctgacca ccgccatctg caaggcactg gtggacgata tcttcgtggt cggcgaggac
      481 gagatcgagc acgccctggc catgatcctg gaaatcgaaa agaccgtgat tgaaggcgct
      541 gccgcggcag gctttgctgc acttctggcc catgctggcc agttcaaggc gcgccaggtt
      601 ggcatcgtga tgtcgggcgg caatatcgac atgcgccttc tgtccaatgt catcctgcgc
      661 gaattgaccc gcgagggccg catcatcctg ctggtgctgc agatcgagga ccggccgggt
      721 cagttggccg acatatcgcg catcatcgcc gatgccggcg gcaatgtgct ggaagtctcc
      781 cacaaccgca tgatggcggg cattccggcc aaatccgcca ccctggaact ggcggtggag
      841 gcgcgcgaca ccgagcacgc ccaggagatt cgcgatcggc tgaccgccaa gggctttcag
      901 caggcctgac gcaagggaac gtttcgcccg ctccgccgtt tgtaaacctt cgtgtgtgga
      961 tattaacctt tcgctaaggc aatgtttcac attgacacag aggcttccta acaatccggt
     1021 tatgcgggcc ggattaccca ttcccagaag cgtggcgcag ctgacaggcg tgctggtgac
     1081 gggcatcgtc gccttcggca ccgatctgga agtttactat gccgtgccgc tgggcgtatt
     1141 cgccggcgca ctggcgatgt tcttcgtttc gctgtcggaa gcgcaggata cctacagggc
     1201 gcgctgggaa cagtacaaat aggcttggta atcaggccga atccggcggg atgttgttca
     1261 gcgaggtttc cagttccagg aagctgggct gatattcgct gggcacgctg ccgcggccga
     1321 tttccaccga cacctgcgcc gcattgccgt gcagatgcgc caccagaatg tcgcggatga
     1381 cgtgatagaa cagcgcgtcc tcgtcgatca ccgctttcag ccgcacgctc atcgggccga
     1441 cgatgccgta agccaggaac acgcccagga aggtgccgac cagggccgag ccgatcatcc
     1501 cgcccagcac ttcgggcggt tcgctgatcg cgcccatggt cttgatcacg cccagcacgg
     1561 cggcgacgat gcccaaagcg ggcaggccgt cggccatggt ttgcagcgca ttggcgccca
     1621 ccagagcctc gtgatgatgc ttttccagct gcttttccat ggcggtttcg acctgatggg
     1681 ggtcttccag gctcatggtc atcatccgca aggtgtcgca gatgaaatcc agcgcgaaat
     1741 ggtctttgca gatccgggga tagcgcttga agatcgagga atcgtcgggc ttttcgatat
     1801 gggcttccag cgcgatcagg cccttggact tcatggtttt ggtcagcagg tacaacaggc
     1861 acagcagatc gcggaaatcc tgcggcttcc agcgcgggcc ggagatgatc tggcccaggc
     1921 cgcccacgat ctttttgata ttgtagaccg agccggcgat cagcatggcg gcgatggcgg
     1981 cgccgaaaat cgtcagcatt tcatgcggca tggcctcgaa caccacggcc agcgaaccac
     2041 cggtcatcag atagccgccg aacacgcagg caaacagaat gacaatgccg ccgatttgaa
     2101 gcatgcgaat aaaacccggg aatatcaggg ctcagtatta acgccagggc ttaaagaggc
     2161 gtgaattgcg cccgcttggc gcggccttaa agcgttaacg cttggtgacc ggcaaggggt
     2221 tagcgcccgt taaacctgtc catagccggc cagccggcgg gccaccagag ccgccagttc
     2281 agccgccacc acttcgccca tgcgcgcatc gccttcctcg gcacgggcgg cgcgggcgat
     2341 ggctgagatg tgca
//
LOCUS       DATMDK010000200         5133 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_785928,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000200 DATMDK010000000
VERSION     DATMDK010000200.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 5133)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5133)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5133
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_785928"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..653)
                     /locus_tag="VNN98_03835"
     CDS             complement(<1..653)
                     /locus_tag="VNN98_03835"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61253.1"
                     /translation="MTSKKHDTLSRRNMLQASGAAMLAGTAGVAPAWAQQGPAAPYNP
                     HPAKRIGQPQEGPDTPKLTLYMEDLLSEDEAIRLKQIGINWIDSQAVPEQPWGMDYLQ
                     PRVDALKKHDMHIGIMMIRWSYQNGMDPNMSKIVYGLPGRDEEIAKIKQTIVNCGKLG
                     IPVVEWNFYNHRATDGYKQVPGRGGAGYSEFKYDRMKDLPALPADGAPQNYEDTWKN"
     gene            complement(737..1288)
                     /locus_tag="VNN98_03840"
     CDS             complement(737..1288)
                     /locus_tag="VNN98_03840"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61254.1"
                     /translation="MHYQPFFRAILLGLCLGVLPGAARAEMLQFATADGTKSWPKLPD
                     IPDWHQDQESSLRLAANSLIPDGVDPANAEMTIQARGFPRRGNTDITSLSQLIDSDRA
                     AAPGSDIKKLADVADKDGTPFTLISFAPAPGKTGSWKAIAYSEEGDYLLAFSFSARSQ
                     AAYDSGFPVFTALIQKYAKEIPW"
     gene            1435..2202
                     /locus_tag="VNN98_03845"
     CDS             1435..2202
                     /locus_tag="VNN98_03845"
                     /inference="COORDINATES: protein motif:HMM:NF024921.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HWM61255.1"
                     /translation="MGKFILGALLAVLATPVLAQTTEINLLTPGVVYNAGILDLAADY
                     TKQTGIKVTVKSDGMAEIVNDVKKGTPIADVIVLPVAFMDGMETEGSIVAGSRADLGR
                     VTIGLAVRKGAPHPDISTPAKLAAALKAGGTVLYSNPAGGSMEARIINDMLYRYAIFH
                     GVKTKISLKGEGGEALVRGEGDMALQLICEVLNHPELELVGPVPVELGAYINTSVAVS
                     SRSTQADAAKAFIAYLMQPDHVALWKSKGLDRHPPEK"
     gene            complement(2210..2776)
                     /locus_tag="VNN98_03850"
     CDS             complement(2210..2776)
                     /locus_tag="VNN98_03850"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61256.1"
                     /translation="MGIKKWTLLCAGISIAAAAPVKADTRDEVLAGIQRCGVIRDDRT
                     WLDCIYGANQPMRTQLGLPPAPEFQQRLVPAIQPGTQPGITPPPLRSVARPAPRKKPG
                     FFATLLGETQPVAVSKMASYRYEKNGAFIVALENGQEWRQTDVDGGTASWMKPPSTYT
                     VTITPGAFGSYSLHTSDNPRVYKVEPVK"
     gene            complement(2923..>5133)
                     /locus_tag="VNN98_03855"
     CDS             complement(2923..>5133)
                     /locus_tag="VNN98_03855"
                     /inference="COORDINATES: protein motif:HMM:NF025214.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HWM61257.1"
                     /translation="FDKALAIKPDFFEALFNKAVALAQLKRFAEAVSSYDKALAVRPD
                     SANCSYNRGIALAALGGLEDALVSYDKALALNPKFAPAWDNRGNVLRDLKRPEQALES
                     YGKALALAPSDFRALYNRATALADLRRFEEAVASYERALALQPRFADALFNRGVALWH
                     LKRVADSLASYDAALAADPDHVVTLLNRAFLQQEVGRFNEALADYDKVIALEPERERA
                     WNGRGTILHALKRGKEALASFDKAVELGPDYADALTNRAHLCWAENGDYAGATADLRA
                     ALAANPDQPYARGELLHLKMYGADWEDFESEKALIDHGVRGGHRVVRPFVYQALSGSP
                     ADLQACSRIFASSLFPAPLQRAPPFPYAHDKIRIGYVSGEFREQATAYLMAGLYELHD
                     RGKFEIIAIDNGGGDGSAMRRRLEAAFDRIITITKMSDDEATNQIRAAEIDILVNLNG
                     YFGAPRMGIFARRAAPIQINYLGFPATLGVPYMDYIFADKVVIPEEERQFYDEQVIYL
                     PHSYQVNDRKRPIAAEAPTRAALGLPGKEFVFCNFNQSYKITPSVFASWMRILKAVDG
                     SVLWLLKSKPVFEMNLSYAAERHGVEPRRLIFAPSLPPDQHLARLKQADLFLDSLPYN
                     AHTTASDALWAGLPLLTCRGTTFPGRVAASLLGAIGMPELVTDCMEDYEALAIRLARN
                     VDELNNLKQKLARNRLTTPLFDTDLFRRNIELAYTAIWEAWKKGEVLNSFAAAS"
BASE COUNT          940 a         1515 c         1634 g         1044 t
ORIGIN      
        1 atgttcttcc aggtatcttc atagttttgg ggtgcgccgt ctgccgggag ggccggcaga
       61 tccttcatcc ggtcgtactt gaattcggaa taaccggcgc cgccgcggcc aggcacctgt
      121 ttgtagccgt ccgtggcgcg atggttgtag aaattccatt ccaccaccgg aatgcccagc
      181 ttgccgcaat tgacgatggt ctgcttgatc ttggcgattt cctcgtcgcg gccgggcagg
      241 ccatagacga tcttggacat gttggggtcc atgccattct ggtaggacca gcggatcatc
      301 atgatgccga tatgcatgtc gtgcttcttg agcgcgtcca cccgcggctg caggtaatcc
      361 atgccccagg gctgttccgg caccgcctgg ctgtcgatcc agttgatgcc gatctgcttg
      421 aggcggatgg cctcgtcctc gctcagcagg tcttccatgt acaaagtgag ctttggcgta
      481 tcggggcctt cctgcggctg gccgatgcgc ttggcgggat gcggattgta gggcgcagcc
      541 ggcccttgct gcgcccaggc gggcgcaacg cccgccgtgc cggccagcat ggccgcgccg
      601 gatgcctgca gcatgttccg gcgcgatagc gtgtcgtgtt ttttgcttgt cattcctggt
      661 cccctggatg tgacgtcttt taacgcctga ttgttgttgg attgcgacgt tatcaattcc
      721 gccgtgcgcg gcaagcctac cagggaattt ccttggcgta tttctggatc agggcggtga
      781 aaacgggaaa gccgctgtcg taagcggcct gggagcgggc gctgaaggag aaagccagca
      841 aataatcgcc ttcctccgaa taggctatgg ccttccagct tcctgttttt cccggtgccg
      901 gtgcgaaaga gatgagcgtg aaaggcgtgc cgtccttgtc ggcaacgtcg gccagttttt
      961 tgatatcgct gccgggcgcg gcggcgcggt cgctgtcgat cagctgggag aggctggtga
     1021 tgtcggtatt gccgcgccgg ggaaatccgc gcgcctggat cgtcatttcc gcattggcgg
     1081 gatccacgcc gtcgggaatg agagagttgg ccgccagacg caggctggac tcctgatcct
     1141 gatgccaatc gggaatgtcg ggtagtttcg gccaggactt cgtgccgtcc gcggtggcaa
     1201 attgcagcat ctcggcccgc gcagcgccgg gcaggacgcc caagcacagc cccagcagga
     1261 tggcgcgaaa gaatggctga tagtgcatct tgctgtcccc ttgctgacgg cagttggcgt
     1321 cagtgttctt gagcggcaat aggccaggat tgcagcttgg aaaattgaat ccaagcacca
     1381 aatgggtata aatgccggga tagagcgcat agcgccggtt tttggagaga aacgatgggg
     1441 aagttcattc ttggcgcatt gctggctgtg cttgccacgc cggttctggc gcaaaccacc
     1501 gagatcaacc tgctgacgcc gggcgtagtc tataatgccg gcatcctcga cctggcggcg
     1561 gactatacca agcagaccgg tatcaaggtt acggtcaagt ccgacggcat ggctgaaatt
     1621 gtgaatgacg tcaaaaaagg gacgcccatc gccgatgtga tcgtgctgcc tgtggccttc
     1681 atggacggga tggagaccga gggcagcatc gtggcaggca gccgcgccga tcttggccgg
     1741 gtcactatcg gcctggcggt gaggaagggc gcgccgcacc ccgatatttc aacgccggcc
     1801 aagctggcgg cggcgctgaa ggccggcggc acggtgctct attccaatcc tgccggcggc
     1861 agcatggaag cgcggatcat caacgatatg ctgtaccgct atgccatctt ccatggcgtc
     1921 aagaccaaga tcagcctgaa gggcgagggc ggcgaggcgc tggtgcgcgg ggaaggcgac
     1981 atggcgctgc aactgatctg cgaagtgctg aaccatcccg agcttgagct ggtgggcccg
     2041 gtgccggtgg agttgggcgc ctatataaac acgtcggttg ctgtgtcttc gcggtccacc
     2101 caggcggatg ccgccaaggc cttcatcgcc tatctgatgc agcccgatca tgtggccctg
     2161 tggaagtcca aggggttgga ccgccacccg ccggagaaat gattgcccgt tacttgacgg
     2221 gttcaacctt gtagacgcgg ggattatccg aggtgtgcag gctgtagctg ccgaaggcgc
     2281 ccggggtaat ggtcacggtg taagtggagg gcggcttcat ccaggacgcg gtgccgccgt
     2341 ccacatcggt ctgacgccat tcctggccgt tttcgagcgc aacgatgaag gcgccatttt
     2401 tttcatagcg ataggacgcc attttggaaa cggcgacagg ctgggtttca cccagcaggg
     2461 tcgcgaaaaa gcccggcttc ttgcgcggcg cgggtcttgc cacggaccgt agcgggggcg
     2521 gcgtgatgcc gggttgggtg ccaggttgga tcgcaggcac caggcgctgc tgaaattccg
     2581 gcgccggcgg caggcccagt tgggtgcgca ttggctgatt ggcgccatag atgcaatcca
     2641 gccatgttcg gtcatcgcgt atcacgccgc agcgctgtat gcccgccagc acctcgtcgc
     2701 gcgtatccgc cttgaccggc gccgccgcgg ctatggaaat cccggcacac agcaaagtcc
     2761 atttcttgat acccacgcgt ctactcccca cgctattttg ccccggccat gattgcacat
     2821 tctaaggccg gttttcagtt gtccagtata tagagtttgg cagcgctttt aaggtcaaat
     2881 ccatggcttc cccaaagccg gccgccgcga cctcgccaac gcctaggacg cggcggcgaa
     2941 gctgtttagc acctcgcctt ttttccaggc ctcccatatg gcggtatagg ccagctcgat
     3001 attcctgcgg aacaggtcgg tatcgaacag cggcgtggtg aggcgattcc gggcaagctt
     3061 ttgcttcagg ttgttcagtt cgtccacatt gcgcgccagc cggatcgcca gggcctcata
     3121 gtcctccatg cagtccgtca ccagctccgg catcccgatc gcgcccagca ggctggcggc
     3181 gacccggccg ggaaaggtgg tgccgcggca agtgagcagc ggcaggccgg cccatagcgc
     3241 atcgctggcg gtggtgtgag cattgtaggg cagcgaatcc aaaaacaggt cggcctgctt
     3301 caggcgggcc agatgctgat cgggaggcag cgagggcgcg aaaatcaggc ggcgcggctc
     3361 cacgccgtgc cgttcggcgg cgtacgacag gttcatctcg aaaaccggct tgcttttgag
     3421 cagccagagc acgctgccgt ccaccgcctt aaggatgcgc atccagctgg caaagacgga
     3481 cggggtgatt ttgtaactct ggttgaagtt gcagaacaca aattccttgc cgggcaggcc
     3541 cagggccgcg cgggtggggg cctccgccgc gatgggccgc ttgcggtcgt tcacctgata
     3601 gctgtgcggc agataaatta cctgttcatc gtagaattgg cgctcttctt cggggatcac
     3661 caccttgtcg gcgaagatat aatccatata ggggacaccc agggtcgcgg ggaaacccag
     3721 atagttgatc tggatcggcg ccgcccgccg ggcaaaaatg cccatgcggg gcgcgccgaa
     3781 atagccgttg agattgacca ggatatcgat ttcggcggcg cgaatctgat tcgttgcctc
     3841 gtcatccgac atctttgtta tggtaatgat cctgtcgaaa gccgcttcca gccgccggcg
     3901 catcgcgctg ccgtctccgc cgccattgtc gatggcgatg atttcaaatt ttccccggtc
     3961 gtgcagctca taaagccccg ccatcagata ggcggtggcc tgctcgcgaa attcgccgga
     4021 gacatagccg atccgtatct tgtcgtgtgc ataaggaaat ggcggcgccc gctgcagagg
     4081 cgcgggaaaa agactgctgg caaagatacg ggagcaggcc tgcagatcgg cgggcgaccc
     4141 ggaaagggcc tgatagacaa agggccgcac gacacggtgt ccgccgcgca cgccgtggtc
     4201 gatcaacgcc ttttcagatt cgaaatcttc ccagtccgcg ccatacatct tcagatgcaa
     4261 cagctcgccg cgcgcataag gctggtcggg attggccgcc agcgccgccc gcagatccgc
     4321 ggtggcgccg gcatagtcgc cattctctgc ccagcacaga tgggcccggt tggtcagggc
     4381 gtcggcatag tccggaccca gttccacggc tttgtcaaaa ctcgccaagg cttctttgcc
     4441 gcgcttgagg gcatgcagga tggtgccgcg gccgttccag gcgcgttccc tctccggttc
     4501 aagtgcgatc accttgtcat agtccgccaa ggcttcgttg aagcggccca cttcctgctg
     4561 cagaaatgcc cggttgagca aggtgacaac gtgatcggga tcggcggcaa gcgccgcatc
     4621 gtagctcgcc agcgagtcag cgacccgttt gagatgccac aaggccacgc cgcgattgaa
     4681 taaggcatcg gcaaaccgtg gctggagggc cagggctctc tcatagcttg ccaccgcttc
     4741 ctcgaagcgg cgcaaatccg ccaaggccgt cgcgcgattg tacaaggcgc gaaaatcact
     4801 gggggcgaga gcaagcgcct tgccataact ttccagcgcc tgttcgggcc gcttcaggtc
     4861 ccgcagcaca ttgccgcgat tgtcccaggc cggcgcgaat ttcggattca gcgccagcgc
     4921 cttgtcgtag ctgaccagcg cgtcttccaa ccctcccagc gccgcaaggg cgataccccg
     4981 gttgtaggaa cagttcgcgc tgtccggcct gacggccagc gccttgtcgt agctgctcac
     5041 agcttccgcg aagcgtttca actgggccag cgccacagct ttgttgaaga gcgcttcgaa
     5101 aaagtccggt ttgatcgcca gcgccttgtc gaa
//
LOCUS       DATMDK010000201         2593 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1469368,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000201 DATMDK010000000
VERSION     DATMDK010000201.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2593)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2593)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2593
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1469368"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..466
                     /locus_tag="VNN98_03860"
     CDS             <1..466
                     /locus_tag="VNN98_03860"
                     /inference="COORDINATES: protein motif:HMM:NF013739.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HWM61258.1"
                     /translation="ADLLPGLTVPDDFRAIVNAHFKMAAPAGAPAILGVIGGTAEWIF
                     TFQDRISVTVSGADAIVDKDREDLALTVWADVTRALGITAPLPAWQIVKEKRATFAAT
                     PAQDARRPAARTQWRNLFLAGDWTQTGLPATIEGALRSGETAAALALRHLSL"
     gene            474..2402
                     /gene="shc"
                     /locus_tag="VNN98_03865"
     CDS             474..2402
                     /gene="shc"
                     /locus_tag="VNN98_03865"
                     /EC_number="5.4.99.17"
                     /inference="COORDINATES: protein motif:HMM:TIGR01507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051007 - squalene-hopene cyclase activity
                     [Evidence IEA];
                     GO_process: GO:0019746 - hopanoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="squalene--hopene cyclase"
                     /protein_id="HWM61259.1"
                     /translation="MNQLNPGEFAEVEGAIRAATDAILAQQRSDGHWVYELEADATIP
                     AEYVLLVHYLAETPNLELERKIGVYLRRIQGAHGGWPLYHEGAFDISATVKAYFALKM
                     IGDDINAPHMARAREAVRARGGAIKANVFSRILLALYGETSWANVPTVPVELILLPRW
                     FPVHLSKMSYWARTVIVPLLVLAALKPLARNPRGVHVPELFVPGVPAASPRAPHQSAG
                     WSAFFAALDKILKVVPLPEGLRAKAIEKCRAWTTERLNGEDGLGAIYPAMANSVMMYD
                     VLGYPPEHPDRAIARKSVENLLIVKEQEAYCQPCVSPVWDTALIAHALLETKDTKAEA
                     AVARGLEWLRPLQVLDVKGDWAEEKPDVRPGGWAFQYRNDHYPDLDDTAVVVMAMDRA
                     KERESYKDAIARGAEWVEGLQSRGGGWGAFDADNSYTYLNNIPFADHGALLDPPTEDV
                     SGRCVGMLAQLGAGNDHPRLKTGIDYLIRTQRQDGSWWGRWGVNYVYGTWSALAGLNG
                     AGLGPDHATMKRGADWLVQIQNPDGGWGENCDSYKLDYRGYEPAPSTASQTAWALLGL
                     MAAGQVDHPAVARGVNYLKATQDADGLWSQAHYTGGGFPRVFYLNYHGYPKFFPLWAL
                     ARYRNLKAGNSRRVEYGL"
     gene            2399..>2593
                     /locus_tag="VNN98_03870"
     CDS             2399..>2593
                     /locus_tag="VNN98_03870"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61260.1"
                     /translation="MTVLAVTGLSKEAKIVGVADVVAMAGGGDAKSLADKLNALHGDI
                     RGVISIGLAGALSPLLKVGDV"
BASE COUNT          449 a          805 c          871 g          468 t
ORIGIN      
        1 ggctgacctg cttcccggcc tgaccgtgcc ggatgatttc cgcgccatcg tcaatgccca
       61 tttcaagatg gcagcacccg cgggtgcacc agccatcctg ggcgtgatcg gtggcacggc
      121 ggaatggata ttcacgttcc aggatcgcat ttcggtgacg gtctcgggcg ccgatgccat
      181 cgtagacaag gaccgcgagg atctggcgct gacggtctgg gccgacgtta cccgggcact
      241 gggcatcacc gcgcccctgc cggcttggca gatcgtcaag gaaaagcgcg ccaccttcgc
      301 cgccacgccg gcgcaggatg cccgccggcc cgccgccagg acccagtggc gcaacctgtt
      361 tctggcgggc gactggaccc agaccgggct gcccgccacc atagaaggcg ccttgcggtc
      421 cggcgagacg gcggcggctt tggcgctgcg gcatctgtct ttatagtagg gtcatgaacc
      481 agctgaaccc aggcgagttt gcagaagtgg aaggcgcgat ccgcgccgcc accgacgcca
      541 tcctggcgca gcagcgctcc gacgggcact gggtctatga gctggaagcc gacgccacca
      601 tcccggcgga atatgtgctc ttggtgcatt acctggccga gacgcccaat ttggagttgg
      661 agcgcaagat cggcgtctat ctgcgccgca ttcagggcgc gcatggtggc tggccgctgt
      721 atcacgaggg cgctttcgac atttccgcga cggtgaaggc ctatttcgct ctcaagatga
      781 tcggtgacga tatcaatgcg ccgcacatgg cgcgcgcccg cgaagcggtt cgtgcgcggg
      841 gcggcgccat caaggccaat gtcttcagcc gaattctgct ggcgctgtat ggcgaaacct
      901 cgtgggccaa cgtccccacc gtgccggtgg aactgatcct gctgccgcgc tggtttccgg
      961 tgcatctgtc caagatgagc tattgggcgc gcaccgtgat cgtgccgctg ctggtgctgg
     1021 cggcgctgaa gcccttggcc cgcaatccgc gcggcgtgca tgtgcccgaa ctgttcgtgc
     1081 cgggcgtgcc tgccgccagt ccgcgcgcgc cgcatcagag cgccggctgg tcggctttct
     1141 tcgccgcgct cgacaagatt ttgaaagtcg tgcccttgcc cgaaggcctg cgcgccaagg
     1201 cgattgaaaa gtgccgcgcc tggaccaccg aaaggctcaa cggcgaggac gggctgggcg
     1261 cgatctatcc cgccatggcc aacagcgtga tgatgtatga cgtgctgggc tatccgccgg
     1321 aacatcccga ccgcgccatc gcccgcaagt cggtggaaaa tctgctgatc gtcaaagagc
     1381 aagaagccta ttgccagccc tgcgtctcgc cggtgtggga cacggcgctg atcgcccatg
     1441 ccctgctgga gaccaaagac accaaggccg aggccgccgt ggcgcgcggg ttggaatggc
     1501 tgcggccgtt gcaggtgctg gatgtgaaag gtgattgggc cgaggaaaaa cccgatgtgc
     1561 ggcccggcgg ctgggccttt caatatcgca acgatcacta tcccgaccta gacgacaccg
     1621 ccgtggtggt gatggcgatg gaccgggcca aggagcgtga gagttacaag gacgccatcg
     1681 cccgcggcgc cgaatgggtg gaagggctgc agagccgggg cggcggttgg ggcgccttcg
     1741 atgccgacaa tagctatacg tatctcaaca atattccctt cgccgatcac ggcgccttgc
     1801 tggacccgcc caccgaagac gtgtcgggcc gctgcgtcgg catgttggcg cagttgggcg
     1861 cgggcaacga tcatccgcgc ctgaagacgg ggatcgatta tctgatccgc acccagcgcc
     1921 aggacggcag ctggtggggc cgctggggcg tcaattatgt ctatggcacc tggtcggcgc
     1981 tggccggctt gaacggcgcg ggactggggc cggaccatgc cactatgaaa cgcggtgccg
     2041 attggctggt acagattcag aatcccgatg gaggctgggg cgagaattgc gacagctaca
     2101 agctggacta tcgtggctat gagcccgcgc cctccaccgc ctcacaaacc gcctgggcgc
     2161 tgctgggctt gatggcggca ggccaggtgg atcatcctgc ggtggcgcgc ggcgtcaatt
     2221 atctcaaagc gacgcaggac gccgacggac tgtggtctca ggcccattac accggcggcg
     2281 gcttcccgcg cgtgttttat ttgaactatc acggctatcc aaaattcttc ccgctctggg
     2341 ccctggcgcg ctaccgcaat ctcaaagcgg gaaattcgcg gcgcgtggaa tacggtctgt
     2401 gactgttctc gctgtcacgg gcctgtccaa agaagccaag attgtcggtg tcgccgatgt
     2461 ggtggcgatg gcgggcggcg gcgatgcgaa atccctggcc gacaagctca acgccctgca
     2521 tggcgacatc cgcggcgtga tctccatcgg cttggcgggg gcgctgtcgc cgttgctgaa
     2581 agtgggcgat gtg
//
LOCUS       DATMDK010000202         3582 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_569411,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000202 DATMDK010000000
VERSION     DATMDK010000202.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3582)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3582)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3582
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_569411"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..249
                     /locus_tag="VNN98_03875"
     CDS             <1..249
                     /locus_tag="VNN98_03875"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61261.1"
                     /translation="VLVLPFGFALADPSQALAAMFAMFALTVLTVLARGYVSLVTWLA
                     AAAFLLACIFPDRFSLLAYVIGVTAFVSAGQGVAKGRP"
     gene            246..1319
                     /gene="thiO"
                     /locus_tag="VNN98_03880"
     CDS             246..1319
                     /gene="thiO"
                     /locus_tag="VNN98_03880"
                     /EC_number="1.4.3.19"
                     /inference="COORDINATES: protein motif:HMM:TIGR02352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016647 - oxidoreductase activity, acting
                     on the CH-NH group of donors, oxygen as acceptor [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycine oxidase ThiO"
                     /protein_id="HWM61262.1"
                     /translation="MNIVIIGAGVAGLGIGWRLQQADAKVTILERAQPGGGASWAAAG
                     MLAITAELEDATEAERALAMRAGALWPGFAAELEEASGRAVFYDRSGALLLAGDPAEL
                     EVMQARADGALRIVDSDEARALVPLLGKTKGGLWSPQEAHVDNRALGEALAIAFLEAG
                     GVLSPNEAAVKIEQGTVLTPYGRYQADAILIAAGAWSGLLGDIPVVPVKGEVIALSPP
                     VGAALPLFNSKGPVVWGEGVYCVPRHGRLLVGATVQEAGFDTSPTTEARDHLRGAAQK
                     LMPSLKDWTLADHWAGLRPKSPDGLPLLGPTKTEGLFVAGGQYRNGILFAPAIAAEMA
                     DLLLGKGGVIPEFDPRRFLGRFA"
     gene            1316..1711
                     /locus_tag="VNN98_03885"
     CDS             1316..1711
                     /locus_tag="VNN98_03885"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF013401.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HIT family protein"
                     /protein_id="HWM61263.1"
                     /translation="MTDFTVDPVIASLTHKLADWPLSRVFVYNDSRFHWGLLVPRRAG
                     AVEICDLDAADQVQLMAEIDRLSKLIRTLPGVEKLNVGALGNMVPQLHVHVIGRHKGD
                     PAWPGPVWGHSPPVPWPGPAPLAGLVSKD"
     gene            1735..2601
                     /locus_tag="VNN98_03890"
     CDS             1735..2601
                     /locus_tag="VNN98_03890"
                     /inference="COORDINATES: protein motif:HMM:NF013618.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglycosylase SLT domain-containing protein"
                     /protein_id="HWM61264.1"
                     /translation="MQAEAASGAERSTVVAALKSAAAATGSDFHYLLGTAMRESSLKP
                     GAQSSTSSASGLFQFIDQTWLGLVKEHGAQHGLGNYAAAISRDSDGRYHAETSAKQSI
                     LALRKDPELSAMMAGEYAKSTQGAMRASLGRDVCGGELYAAHFLGPDAACKLIRLAGS
                     EPGASAAAQFPQAASANKSVFFHADGAPKSVREVYDWALRQPGGEGTVRVLPDVSGTI
                     TLDKARTSVATAHDTEVQMLLASVMNWQPRHSLFGNLFGLNDNAATPSSAMSFGPGLL
                     GLLSDARSDDQA"
     gene            2741..3208
                     /locus_tag="VNN98_03895"
     CDS             2741..3208
                     /locus_tag="VNN98_03895"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61265.1"
                     /translation="MNRRLAAAMLLMLSPGARAAEPSLSVTGLVSNPLHLSLAELRSF
                     PAAHVTAAQASGRGPVALDCTGVAVSALLERASLSLGTQKNAKLARTLLIAGDDGYAV
                     ALSLGEIDPDYGHAAPVIATDCGGKALDAPRLVVPGDGHAGRAVRGVVTIEVK"
     gene            3387..>3582
                     /locus_tag="VNN98_03900"
     CDS             3387..>3582
                     /locus_tag="VNN98_03900"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61266.1"
                     /translation="MQYLLLLYANEAGWSALTPAEQQQGVAAYGAYSEALKKAEILVG
                     SNRLQSISTATTVRIAGGKSQ"
BASE COUNT          599 a         1109 c         1214 g          660 t
ORIGIN      
        1 gtgctggtgc tgcccttcgg ctttgccctg gctgatccct cgcaggcgct ggcggccatg
       61 ttcgcgatgt tcgccctgac cgtgttgacg gtgcttgccc ggggatatgt ttctcttgtc
      121 acctggctgg cggcggcggc atttctgctg gcctgtatct tcccagatcg ctttagcctc
      181 ttggcctatg tcattggcgt gacagcgttt gtttctgcag gacagggcgt tgcaaagggg
      241 cggccgtgaa catcgtcatc atcggcgccg gagtagccgg tttgggcata ggctggcggc
      301 tgcaacaggc cgacgccaag gtcaccatcc tggaacgggc ccagccaggc ggcggcgcca
      361 gctgggcggc ggcggggatg ttggcgatca ccgccgagct ggaagatgcc accgaggccg
      421 aacgcgccct ggcgatgcgg gcgggcgccc tgtggcccgg ctttgcggcc gagctggaag
      481 aggccagcgg ccgcgccgtc ttttacgacc gtagcggcgc gctgctgctg gcgggcgatc
      541 ccgccgaact ggaagtgatg caggcccggg cagacggggc cttgcggata gtggattcgg
      601 atgaggcccg cgccctggtg ccgctgctgg ggaaaaccaa aggcgggctg tggtcgcccc
      661 aggaagccca tgtcgacaac cgtgcgctgg gcgaggcctt ggccattgcc ttcctggaag
      721 cgggcggcgt cctcagtccc aacgaggcgg cggtgaagat cgagcaggga acagtgctga
      781 cgccctatgg ccgctaccag gcggatgcca tcctgatcgc ggcgggggcc tggagcgggt
      841 tgctgggaga tattcccgtg gtgccggtca agggcgaggt gatcgcactg tcgccgcctg
      901 tgggcgcggc gctgcccctc tttaattcaa agggcccggt ggtgtggggc gagggggtct
      961 attgcgtgcc ccgccacggc cggctgctgg taggcgcgac ggtgcaggag gcaggcttcg
     1021 acaccagccc caccaccgaa gcccgcgatc acttgcgtgg tgcagcccag aagctgatgc
     1081 cctcgctgaa agattggacc ttggcggatc actgggcggg gctgcgcccc aaaagtcccg
     1141 acggcttgcc gctgctggga ccgaccaaga ccgagggcct gttcgtggcg ggcggccagt
     1201 atcgcaacgg tattctcttc gcccccgcca tcgcagccga gatggcggac ctgctgctgg
     1261 gcaagggcgg cgtcattcct gaatttgatc ctcgacggtt tcttgggaga tttgcatgac
     1321 cgacttcacg gttgatcccg tcattgcctc gctgacgcac aagttggcgg attggccgct
     1381 cagccgggtc tttgtctaca acgactcccg tttccactgg ggcctgctgg tgccgcgccg
     1441 ggccggggcg gtggagattt gtgacctcga tgccgccgat caggtgcagc tgatggccga
     1501 gatcgaccgg ctgtcgaagc tgatccgcac cctgccaggg gtggagaagc tcaatgtcgg
     1561 ggcgctgggc aatatggtgc cccagctgca tgtccatgtg atcggccgcc acaaaggcga
     1621 cccggcctgg ccggggccgg tctggggcca cagcccgccg gtgccatggc cgggcccagc
     1681 gccgctggcc gggctggtaa gcaaagatta accataagcc gtcagaacaa tctgatgcag
     1741 gcagaagccg catcgggagc agaacgttcc actgtcgtcg ccgcgctgaa gagcgccgcc
     1801 gccgcgacgg gatcggattt ccattacctg ttgggcaccg ccatgcgcga gtccagcttg
     1861 aagccgggcg cccagtccag cacatcctcc gccagcggcc tgttccagtt catcgaccag
     1921 acctggttgg ggctggtgaa ggagcatggc gctcagcacg ggttgggaaa ctatgccgcc
     1981 gccatcagcc gcgatagcga cggccgctat cacgccgaga catcggccaa gcaatccatc
     2041 ctggcgctgc gcaaggatcc tgaactctcc gccatgatgg ccggcgaata tgccaaatcc
     2101 acccaaggcg ccatgcgtgc gtcgctggga cgcgacgttt gcggcggcga actttacgcc
     2161 gcgcatttcc tgggccccga tgccgcctgc aagctgatcc ggctggcggg cagtgagccc
     2221 ggcgccagcg cggcggcgca atttcctcaa gccgcctccg ccaacaaaag tgtgttcttc
     2281 catgccgacg gtgcgcccaa gtcggtgcgc gaagtctatg actgggcgct gcgccagccc
     2341 ggcggcgaag gcacggtacg ggtacttccc gatgtctccg ggaccatcac cttggacaag
     2401 gcgcgcactt cggtcgcgac ggcgcatgac accgaggtcc agatgctgct ggcgagtgtg
     2461 atgaactggc agcccaggca cagcctgttc ggcaatctgt tcggcttgaa cgacaatgcc
     2521 gcgaccccca gttcggcgat gagcttcggc ccagggttgc tggggctgct gtcggacgcg
     2581 cggagcgacg accaagcgta gcgcagcgcc cgagcgcgcg accaattaaa aaagactcga
     2641 cctcctgatc cgcgccggag cgatgcttta agccgctctt cttgcgtggt atacccaaaa
     2701 atatcacgag gttttttgtc ttccgcaaaa ggataagtcc atgaacagaa ggcttgcggc
     2761 cgcaatgttg ctcatgcttt cgccgggagc ccgggctgcc gagccgtctt tgtccgtgac
     2821 gggtctggtg tcaaatccgc tacatctgtc gctcgcggag cttcgttcct ttcccgccgc
     2881 ccatgtcacc gccgcccagg cgagtgggcg tggtcctgtc gccctggatt gcacgggtgt
     2941 cgccgtctcg gcgttgctgg agcgggcgtc gctgtcgctg ggaacgcaaa aaaacgccaa
     3001 gctggcgcgc accctgttga ttgccggcga tgacggttat gccgtggcgc tgtccctggg
     3061 cgagatcgat ccggactatg gacatgccgc gccggtcata gcgaccgact gcggcggcaa
     3121 ggcgctcgac gcgccgcgtc ttgtcgtgcc gggcgatggt catgccgggc gcgcggtgcg
     3181 cggcgtggtg accatcgaag tgaaatagcg gcccgcgagg gtactcaagc atctgttttg
     3241 attgtgcccc tggcgccaaa ggacccgaag gcgatgcctg cgggcaattt ttttgtgaag
     3301 ttgtccctga ctgtccaaaa ggcggatact caagcgtcat tcgcacggtg gagcatggtg
     3361 cccgccgaca atcatgggaa aataacatgc agtatctttt gttgctctac gcaaacgaag
     3421 ccggctggtc agcgctgacc cccgccgaac agcagcaggg tgtggccgct tacggtgcct
     3481 atagcgaggc gctgaagaaa gcggaaatat tggttgggtc aaaccgcctt cagagcatct
     3541 ccacggccac gaccgtgcgc atagccggcg ggaagtcgca gg
//
LOCUS       DATMDK010000203         3663 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_336948,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000203 DATMDK010000000
VERSION     DATMDK010000203.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3663)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3663)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3663
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_336948"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            1..126
                     /locus_tag="VNN98_03905"
     CDS             1..126
                     /locus_tag="VNN98_03905"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: protein motif:HMM:NF012456.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045261 - proton-transporting ATP
                     synthase complex, catalytic core F(1) [Evidence IEA];
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit gamma"
                     /protein_id="HWM61267.1"
                     /translation="MDNATRNAGDMISALTLKYNRTRQAQITKELIEIISGAEAL"
     gene            146..1696
                     /gene="atpD"
                     /locus_tag="VNN98_03910"
     CDS             146..1696
                     /gene="atpD"
                     /locus_tag="VNN98_03910"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020045332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000275 - mitochondrial
                     proton-transporting ATP synthase complex, catalytic sector
                     F(1) [Evidence IEA];
                     GO_component: GO:0045261 - proton-transporting ATP
                     synthase complex, catalytic core F(1) [Evidence IEA];
                     GO_component: GO:0045262 - plasma membrane
                     proton-transporting ATP synthase complex, catalytic core
                     F(1) [Evidence IEA];
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit beta"
                     /protein_id="HWM61268.1"
                     /translation="MATTTAAKKKPAAPKKAAPAPVAGAKDVKGAVATGRLVQIIGAV
                     VDVEFEGHLPAILSALETTNVDQRTGEPFRLVFEVAQHLGENTVRAIAMDTTEGLTRG
                     QEVIDTGTPIRVPVGPATLGRIMNVIGEPIDEAGPIDQTHMASIHREAPTFSEQQGTT
                     EILVTGIKVIDLLCPYTKGGKIGLFGGAGVGKTVTMQELINNIAKAYGGYSVLAGVGE
                     RTREGNDLYHEMIESNVNVDPKKNGSTEGSKCALVYGQMNEPPGARARVALTGLSVAE
                     YFRDVEGKDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATEMGNLQERITST
                     NKGSITSVQAIYVPADDLTDPAPAASFAHLDATTVLSRDIAAQAIFPAIDPLDSTSRI
                     LDPQVIGEEHYTVARRVQEVLQSYKALKDIIAILGMDELSEDDKLTVSRARKISRFFS
                     QPFFVAEQFTNTPGKFVELADTIRSFKAIVDGEYDHLPEQAFYMVGPIEEAVAKGQKM
                     AAETAKAA"
     gene            1699..2094
                     /locus_tag="VNN98_03915"
     CDS             1699..2094
                     /locus_tag="VNN98_03915"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: protein motif:HMM:NF001851.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045261 - proton-transporting ATP
                     synthase complex, catalytic core F(1) [Evidence IEA];
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit epsilon"
                     /protein_id="HWM61269.1"
                     /translation="MAAKIAFELVSPERLLLSCTADMVTVPGTEGYMGVMAGHAPLVS
                     TLRAGMIDVLVDGKDDRYFIRAGFAEIGPTKITVLAEEAIPMTEMDLAVLDQRIFDAQ
                     DDEIAAKTDPDRLKAAQMVDDLKLVRAAF"
     gene            2216..3055
                     /locus_tag="VNN98_03920"
     CDS             2216..3055
                     /locus_tag="VNN98_03920"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="ferritin-like domain-containing protein"
                     /protein_id="HWM61270.1"
                     /translation="MTVAPVYKQGWTMDDVHWSLFDPARVDPAMLAAVKAAALVEYNA
                     PDYVTYLKRVFASAGPQILASLEQWGREEAQHGRALGRWAEMADPSFKLEEAFARFRK
                     GYTPPHFMAAEDGSVRGSRRGEMIARCVVESGTSSYYSAIRDASEEPVLKEIAGRIAA
                     DEYRHYKLFYDTLHAQAEPDISFWKKLWIAVGRVRESDDDELAFSYYCANVPPEKEAI
                     TPYKRRKYSHLASQTSMTIYHRHHVQKLVQMVVKVLGANPHGWLANLAGALLWRRLSA
                     RSA"
     gene            complement(3052..>3663)
                     /locus_tag="VNN98_03925"
     CDS             complement(3052..>3663)
                     /locus_tag="VNN98_03925"
                     /inference="COORDINATES: protein motif:HMM:NF012696.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004089 - carbonate dehydratase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbonic anhydrase"
                     /protein_id="HWM61271.1"
                     /translation="FLSGRFASERARYQDLAGLGQSPSIMVIGCVDSRVSPEVIFDAA
                     PGELLVARNVANIVPRYEPPTTSEEDVSQQHGTSAALEFAVRALKVSHIVVLGHAFCG
                     GIKAFASDDAPLTSSDFIGRWMSQIAPAADAISAPKEDWEAYLRQLEFASVELSLKNL
                     ATFPFVQTAVEKGELALHGAYFGVASGKLLVRNEAGAFEPVDA"
BASE COUNT          714 a         1231 c         1108 g          610 t
ORIGIN      
        1 atggacaacg ccacccgcaa cgccggcgac atgatctcgg cgctgacgct gaagtacaac
       61 cgcacacgcc aggcgcagat caccaaggag ctgatcgaga tcatctccgg cgccgaagcg
      121 ctctagaccg aaagaactgg atcccatggc tacgaccacc gccgccaaga agaagcccgc
      181 cgcccccaag aaggccgcgc ccgccccggt cgctggcgcc aaagacgtaa agggggccgt
      241 cgccaccggc cgtctggtgc agatcatcgg cgccgtcgtc gacgtcgagt tcgagggcca
      301 cctgccggcg atcctcagcg cgctggagac caccaacgtc gaccagcgga ccggcgagcc
      361 cttccgcctg gtgttcgagg tcgcccagca cctgggcgag aacaccgtgc gcgccatcgc
      421 catggacacc accgagggcc tgacccgcgg ccaggaagtg atcgacaccg gcacccccat
      481 tcgcgtgccg gtcggtcccg ccaccctggg ccgcatcatg aatgtgatcg gcgagccgat
      541 tgacgaggcc ggccccatcg accagaccca catggcctcg atccaccgcg aagccccgac
      601 cttctccgaa caacagggca ccaccgaaat cctggtcacc ggcatcaagg tgatcgacct
      661 gctctgtccc tataccaagg gcggcaagat cgggctgttc ggcggcgccg gcgtcggcaa
      721 gaccgtcacc atgcaggaac tgatcaacaa tattgccaag gcctatggcg gctattcggt
      781 gctggcgggc gtgggcgaac gcacccgcga aggcaacgat ctctatcacg agatgatcga
      841 gtccaacgtc aatgtcgatc ccaagaagaa cggctcgacc gaaggcagca aatgcgccct
      901 ggtctatggc cagatgaacg agccgccggg cgcccgcgcc cgcgtggccc tgaccggcct
      961 gtcggtggcg gaatatttcc gcgacgtcga aggcaaggac gtgctgctgt tcatcgacaa
     1021 catcttccgc tttacccagg ccggttcgga agtgtcggcc ttgctgggcc gtatcccatc
     1081 ggcggtgggc tatcagccca ccctggcgac cgagatgggc aatctgcagg agcgcatcac
     1141 ctccaccaac aagggctcga tcacctcggt gcaggcgatt tatgtgccgg ccgacgatct
     1201 gaccgacccg gcgcccgccg cctccttcgc gcatctggac gccaccaccg tgctgtcgcg
     1261 cgacatcgcc gcccaggcga ttttcccggc gatcgatccc ttggactcca cttcgcgcat
     1321 tctcgatccc caggtgatcg gcgaggagca ttacaccgtc gcccgccggg tgcaggaagt
     1381 gctgcagtcc tacaaggcgc tgaaggacat catcgccatt ctgggcatgg acgaactgtc
     1441 ggaagacgac aagctgaccg tgtcgcgcgc ccgcaagatc agccgcttct tcagccagcc
     1501 cttcttcgtg gccgaacagt tcaccaacac ccccggcaag ttcgtcgaac tggccgacac
     1561 cattcgcagc ttcaaggcga tcgtggacgg cgaatatgat cacctgcccg aacaggcctt
     1621 ctacatggtc ggcccgattg aggaagccgt cgccaagggc cagaagatgg cagccgaaac
     1681 cgcgaaggcc gcttaagcat ggccgcgaag atcgccttcg agctggtctc gccggaacgg
     1741 ctgctgctct cctgcacagc cgatatggtc accgtgcccg gcaccgaagg ctatatgggc
     1801 gtgatggcgg gccatgcccc cctggtttcc accctgcgcg ccgggatgat cgacgtgctg
     1861 gtcgacggca aggatgaccg ctatttcatc cgcgccggct ttgccgagat cggtcccacc
     1921 aagatcacgg tcctggccga ggaagccatc cccatgaccg aaatggactt ggcagtgctg
     1981 gatcagcgta tcttcgacgc ccaggacgac gagatcgccg ccaaaaccga ccccgaccgg
     2041 ctgaaggccg cccagatggt ggacgacttg aagcttgtcc gcgccgcttt ttaacccgcc
     2101 gcgattaaca cttgtgacac ttagcccttg cgccgcttta gcgcccgccc ggcttttgct
     2161 ataaatcgaa gccgaagcac cggaaccccg ggctttggcg gggagtttta tgattatgac
     2221 ggtcgcaccc gtctacaaac agggttggac catggacgat gtccattggt cgttgttcga
     2281 cccagccagg gttgatccgg cgatgctggc tgccgtcaaa gctgccgccc tggtggaata
     2341 taacgctccc gactatgtca cctatctgaa gcgggttttc gccagcgctg ggccgcagat
     2401 cctggcctcc ttggaacaat ggggccggga agaggcccag catggccgcg ccctggggcg
     2461 ctgggccgag atggccgatc cttccttcaa gctggaagag gcctttgccc gcttccgcaa
     2521 gggttacacc ccgccccatt tcatggccgc agaggacggt tcggtgcggg gctcgcgccg
     2581 gggcgagatg atcgcccgct gcgtggtgga aagcggcacc tcctcctatt actccgccat
     2641 ccgtgacgcc agcgaggagc cggtactgaa agagatcgcg gggcgcatcg cggccgacga
     2701 ataccgccac tacaagctgt tctatgacac cctgcacgcc caggccgagc cggacatcag
     2761 cttctggaag aagctctgga tcgccgtggg acgggtgcgg gagagcgacg atgacgaact
     2821 cgccttctcc tattactgcg ctaatgttcc gcctgagaaa gaagcgataa caccttacaa
     2881 gcgcaggaaa tattcgcacc tggccagcca gaccagcatg accatctacc accgtcatca
     2941 tgtccagaaa ctggtgcaga tggtggtgaa ggtgctgggc gccaacccgc atggctggct
     3001 ggcgaatctg gcgggtgcgc ttttgtggcg gcggctgtcg gcgcgttccg cctaggcgtc
     3061 caccggctcg aacgcgcccg cttcgttccg taccagcagc ttgcccgaag ccacgccgaa
     3121 ataggccccg tgcagcgcca gctcgccctt ctccaccgcc gtttgcacga agggaaaggt
     3181 cgccaggttc ttgaggctaa gctcgaccga ggcgaattcc agctggcgca aataggcctc
     3241 ccaatcctcc ttgggcgcac tgatggcgtc ggcggcgggg gcgatctggc tcatccagcg
     3301 gccgatgaaa tcgctgctgg tcaggggggc atcgtccgag gcgaaagcct tgatgccgcc
     3361 gcaaaaagca tgccccagca ccacgatgtg cgaaaccttg agcgcccgca ccgcgaattc
     3421 cagcgccgcg ctagtgccgt gttgctggct aacgtcttcc tcagaagtcg tgggcggctc
     3481 atagcgcggc acgatgttgg cgacgttgcg cgccaccagc agctcacccg gggcggcgtc
     3541 gaagatcact tccggcgaca cccggctgtc gacgcagccg atcaccatga tcgaggggct
     3601 ttgccccaag ccggccaagt cctgatagcg ggcgcgctcg gaagcgaacc gcccactcag
     3661 gaa
//
LOCUS       DATMDK010000204         2074 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1008382,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000204 DATMDK010000000
VERSION     DATMDK010000204.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2074)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2074)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2074
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1008382"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..201)
                     /locus_tag="VNN98_03930"
     CDS             complement(<1..201)
                     /locus_tag="VNN98_03930"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61272.1"
                     /translation="MRGYFAVGVEGVSKPMNLGNLVRIAHAFDASFFFSIAPRLKLSD
                     ANSDTSNAEGRLPFYSFDKVEDF"
     gene            complement(235..651)
                     /locus_tag="VNN98_03935"
     CDS             complement(235..651)
                     /locus_tag="VNN98_03935"
                     /inference="COORDINATES: protein motif:HMM:NF039797.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6491 family protein"
                     /protein_id="HWM61273.1"
                     /translation="MTRYLWIATLACVGLLLLEASALGQGQPAAPAVGPPCLRQGYIY
                     DFQNVTGNRSLVVIDRARKRYRLNFMGVCYNLQYHLGLGFKTRGVGTLSCVAKGDQVV
                     MRDAVGPNWCVIKDIQYQTPALDQSDAVAAAAAKKR"
     gene            831..>2074
                     /locus_tag="VNN98_03940"
     CDS             831..>2074
                     /locus_tag="VNN98_03940"
                     /inference="COORDINATES: protein motif:HMM:NF013715.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="divalent metal cation transporter"
                     /protein_id="HWM61274.1"
                     /translation="MSEPPTTSPAKPNLRARLHAAPFLGKLGPGLITGAADDDPSGIA
                     TYSQGGAQFGFNLLWTMLLTFPLMAAIQMVSALVGRVTGRGLAYNMAQVMPRPLVLGL
                     LALLFIANTVNVGADVAAMGEAAKLVTGLNQHTFTIFFALVSLGLQLFIPYRRYARFL
                     TVLTFSLFAYVAIMYLLPLDWTAIGAGMIGLHPNLTDNAATTIVAIFGTTISPYLFFW
                     QSAQEVEEVDQRDDEHPLIDQPREGPEAISRIRIDTIAGMLASNLVALAIMIATAATL
                     HAHGVTNINTAADAAQALKPIAGRFAFALFSLGIIGTGLLAIPVLAGSAGYAVAEGLG
                     WKTGLDNMPWQARGFYSVIGAAVILGLGIDWSPIDPIKALYWSAVLNGVIAVPLMAAL
                     MFVAHSRVKMGEFRTGWVLGGLG"
BASE COUNT          366 a          697 c          614 g          397 t
ORIGIN      
        1 aaaatcctcc accttgtcga aggaataaaa gggcagccgc ccttcggcat tgctggtgtc
       61 gctgttggca tcggacagct tcagccgcgg cgcgatggaa aagaagaaac tggcgtcaaa
      121 ggcgtgcgcg atccggacca gattgcccag attcatcggc ttggaaacgc cttcaacgcc
      181 tactgcaaaa taaccccgca tgacctctga gtagccgatt cagccgcgag tcgcctaacg
      241 cttcttggcg gccgctgctg ccacggcgtc ggattggtcc agtgccggcg tctgatactg
      301 gatatccttg atgacgcacc agttggggcc caccgcgtcg cgcatgacca cctggtcgcc
      361 cttggcgacg caggacaagg tgcccacgcc acgggtcttg aatcccaggc caaggtgata
      421 ttgcagattg tagcagaccc ccatgaaatt caggcggtag cgtttgcgcg cacggtcgat
      481 gacgaccagc gagcgattgc ccgtcacgtt ctgaaaatca taaatgtagc cttggcgcag
      541 acagggcggt cccaccgccg gcgccgcggg ttgcccctgc ccaagcgcgg acgcttccaa
      601 caggagcagg ccgacacagg ccagcgtggc gatccaaaga taacgagtca tgctatcctc
      661 cataggcccc ttcccgcgca tcctacaccg ccggaaggat cacttcgatc ctgattgctt
      721 ttttatttcc ccctccgccc ttcgcatcgc aagcgctgct acgggcacct cccccgctct
      781 gcttcgcagc gggagaggcc tgacctgcgt taacggacag aaacggtacc atgtctgagc
      841 cccccaccac ctcccccgcc aagcccaacc tgcgcgcccg tctgcacgcc gcccccttcc
      901 tgggcaagct ggggcccggc ctgatcaccg gggcggccga cgacgatccc agcggcatcg
      961 ccacctacag ccagggcggc gcccagttcg gcttcaacct gctgtggacc atgctgctga
     1021 cctttccgct gatggcggcg atccagatgg tcagcgccct ggtgggccgg gtcaccggcc
     1081 gcggcctggc ctacaatatg gcccaggtga tgccgcgccc gttggtgctg ggcctgctgg
     1141 cgctgctgtt catcgccaac accgtcaatg tcggggccga tgtggcggcc atgggcgaag
     1201 cggccaaact cgtcaccggg ctcaaccagc acactttcac cattttcttc gcccttgtgt
     1261 cgctggggct gcagcttttc attccctatc gccgctatgc ccgcttcctg acggtgctga
     1321 ccttcagcct gttcgcctat gtcgccatca tgtatttgct gccgctggat tggaccgcga
     1381 tcggcgccgg catgatcggg ctgcatccca atctcaccga taacgccgcg acaaccatag
     1441 ttgccatctt cggcaccacc attagcccct atctcttctt ctggcagagc gcccaggaag
     1501 tcgaggaagt ggaccagcgt gacgacgaac atcccctgat cgaccagccg cgcgaaggcc
     1561 ccgaagcgat cagccgcatc cgcattgaca ccatcgccgg catgctggcg tccaacctgg
     1621 tggcgctggc catcatgatc gccaccgccg cgaccctgca tgcccatggc gtcaccaata
     1681 tcaacactgc cgccgacgcc gcccaggcct tgaagcccat tgccggacgc ttcgctttcg
     1741 ccttgttcag cctgggcata atcggcaccg ggttgctggc gattcccgta ctggcgggat
     1801 cggcgggtta tgcggtggcc gaagggctgg gctggaagac cgggctggac aatatgccct
     1861 ggcaggcgcg cggcttttat tcggtgatcg gggcggcggt gatcctgggc ctggggatcg
     1921 actggtcgcc gatcgacccc atcaaggcat tatactggag cgcggtattg aacggcgtca
     1981 tcgccgtgcc tctgatggcg gcgctgatgt tcgtggccca tagccgggtc aagatgggcg
     2041 aattccgcac cggctgggtg ctgggcgggt tggg
//
LOCUS       DATMDK010000205         2967 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_89621,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000205 DATMDK010000000
VERSION     DATMDK010000205.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2967)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2967)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2967
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_89621"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..200)
                     /locus_tag="VNN98_03945"
     CDS             complement(<1..200)
                     /locus_tag="VNN98_03945"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61275.1"
                     /translation="MNAISIARGDAPQRKVVALAPAVAAMAYPFVLQAFHLVISPPAP
                     SPIRLAGAAALLVLAFALPLSGL"
     gene            complement(256..990)
                     /locus_tag="VNN98_03950"
     CDS             complement(256..990)
                     /locus_tag="VNN98_03950"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013866.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005829 - cytosol [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dienelactone hydrolase family protein"
                     /protein_id="HWM61276.1"
                     /translation="MIETKIEIPNLGAEAFLYRPDAIADFPGVVFLVDIWGVRAGNIA
                     MAKRLADKGFAVLLPNVVHRYSPIVPGGLEPEDEQEKQKALGALFRALTPAQMESDGV
                     AYVDFLLAQKGVKPGKVGVVGYCFTGQMALRTAAAVPDKVAAAASFHGGFLVTDAPDS
                     PHKQLPRVKARLYFGHAVEDASATPEQVAILEQALRDWHGAFQNETYEGARHGWTVPG
                     RPVYNELQAERAFEKQVELFEATLKQ"
     gene            complement(971..1549)
                     /locus_tag="VNN98_03955"
     CDS             complement(971..1549)
                     /locus_tag="VNN98_03955"
                     /inference="COORDINATES: protein motif:HMM:NF012521.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HWM61277.1"
                     /translation="MRILLIRHGQPHIALSPATNHAGFAAYIDAYEEAGLSPSNLPPD
                     ELRDLVRELDHVFTSDRPRSGQSAAALAPHAELIADPLFAEAPLASPPIPLLAMRVPK
                     WAVVSRILWHAGFHPGIENPRAAMKRAAQAADILTARAHVTGVTALVAHGYFNWMIGR
                     QLLRRGFTRTGSHQARYWNTVIYENKDDRNKN"
     gene            1873..2670
                     /locus_tag="VNN98_03960"
     CDS             1873..2670
                     /locus_tag="VNN98_03960"
                     /inference="COORDINATES: protein motif:HMM:TIGR02001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015288 - porin activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TorF family putative porin"
                     /protein_id="HWM61278.1"
                     /translation="MKNSIKLLLGAVSLVGLFGGVSAPALAQDAAAAAPAAPDWALTG
                     YIDVQSDYKFRGISQNKRDPSPQGSLGLTGPDGFYVGVWTSTVDWNLAGQNSNPSVEV
                     DIYGGKHTDLWGVDWNIEPYYYAYPSANAAGGPTADYFELINQLSKPFGPVTLTATWA
                     WSPTFSLGGGTGNYFAGTAAYTINDWLSVSGNLGHQWVQAAKYNGSSDYTYADIGVTA
                     TYKGFALDLRYSGTDLNNTTCGFYMGTKHACAGDVVATLTYNFALLP"
     gene            2765..>2967
                     /locus_tag="VNN98_03965"
     CDS             2765..>2967
                     /locus_tag="VNN98_03965"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61279.1"
                     /translation="MTIEIRKITGPTDEARALVAELEQELARHYPPEQRHGLAFASIF
                     QPNIRFFVARRQGAAVGCGGIAL"
BASE COUNT          589 a          955 c          900 g          523 t
ORIGIN      
        1 agcccggaca gcggcaaggc aaaagcgaga acaagcaggg ccgcggcacc cgcgaggcga
       61 atgggcgaag gggccggcgg agaaatcacc agatggaatg cctgcagcac aaagggatag
      121 gccatcgccg ccacggccgg agccagagca acgactttgc gctggggcgc atcacccctg
      181 gcgatggata tcgcgttcac cgtcccagcc tacttgtccg gcgccggccc gaacaggaaa
      241 attccggtca tgcggctatt gcttcagcgt ggcttcgaac aattcgactt gcttctcaaa
      301 cgcccgctcg gcctgcagct cgttgtagac cggccgccca ggcaccgtcc aaccatgccg
      361 ggccccttca taggtctcgt tctggaaggc accgtgccaa tcgcgtaacg cctgttccag
      421 aattgcgacc tgctccggcg tcgccgacgc atcttccacc gcatgaccga aatacagccg
      481 cgccttcacg cgcggcaatt gcttgtgcgg gctgtcgggc gcatccgtca ccagaaagcc
      541 gccatgaaaa gaggccgctg cggcaacctt gtccggcacg gccgcggccg tgcgcagcgc
      601 catctggccg gtgaagcaat agcccaccac gcccaccttg ccgggcttca cgcctttttg
      661 cgccagcaga aaatcgacat aggccacgcc atcgctttcc atttgcgccg gggtcagcgc
      721 gcggaacaag gcgcccagcg ccttctgctt ttcctgctcg tcttcgggct ccagcccgcc
      781 cggcacgatg ggcgaatagc ggtgcaccac attgggcagc agcacggcga agcccttgtc
      841 ggccagcctt ttggccatgg cgatattgcc ggcacggacg ccccagatgt cgaccagaaa
      901 caccacaccg gggaaatcgg cgatggcgtc gggccggtag agaaaggcct cggcgcccag
      961 attgggaatc tcaatttttg tttcgatcat ctttgttctc atagatcacg gtgttccagt
     1021 aacgcgcctg atggcttccg gtgcgcgtga aaccgcgccg cagcagctgg cggccgatca
     1081 tccaattgaa atagccatgc gccaccagcg cggtgacgcc ggtcacatgc gcccgcgcgg
     1141 tcaggatgtc ggcggcttgg gcggcgcgct tcatggcggc gcgcgggttc tcgatccccg
     1201 gatgaaaccc cgcatgccac agaatgcgcg acaccaccgc ccatttgggt acccgcatgg
     1261 ccagcagggg aatgggggga ctggccagcg gcgcctcggc gaacagcgga tcggcgatca
     1321 gttcggcatg cggcgccagc gcggcggcgc tttgcccgct gcgggggcgg tcactggtga
     1381 aaacatggtc cagttctcgc accaggtcgc gcagctcgtc gggcggcaga ttggatggcg
     1441 acagcccggc ctcttcatag gcatcgatat aggcggcgaa gccggcatgg ttggtcgccg
     1501 gactgagcgc gatatgcggc tggccgtgcc ggataaggag aattcgcatc gctaggggtg
     1561 aaatttctga gggcgcaagc tgagtccttc cggtggccgg gcgagactaa acggtcagca
     1621 tggcaatcct gaaacgctta aactttcttc cactgtgcct agggaaaagg ccttgggccc
     1681 aataattagg caacttgctg ttgcattgca acaacgcccg tccaaatcat gcgtcaaacc
     1741 cccaaaacct ggcagaaaag acaaaccgcc atattgagat tggcggtgcg aaacagaact
     1801 gtcatcgcga tccggggaat gccccgcgag cgcgcacgat tcgggcagca attaacataa
     1861 ggggacttgt gaatgaaaaa ttcgatcaaa ctgcttttgg gcgccgtgag cctggttggc
     1921 ctgttcggtg gcgtcagtgc ccccgccctc gcccaggacg cagccgccgc tgcccctgct
     1981 gccccggatt gggcgctgac cggctatatc gatgttcaga gcgactacaa attccgcggc
     2041 atcagccaga acaagcgcga tccctcgccg cagggctcgc tgggcctgac cggccccgac
     2101 ggcttctatg tcggcgtctg gacatcgacg gtggactgga atttggccgg ccagaacagc
     2161 aatccgtcag tcgaagtcga catctatggc ggcaagcata ccgacctgtg gggcgtggac
     2221 tggaacattg agccctacta ctacgcctat ccgtccgcca acgcggccgg cggacccacg
     2281 gccgattatt tcgagctgat caaccagctc tccaagccat tcggtccggt caccttgacc
     2341 gccacctggg cttggtcgcc caccttcagc ctgggcggcg gcaccggcaa ctattttgcc
     2401 ggtacggcgg cctacacgat caacgactgg ctgagcgtca gcggcaatct cggccatcag
     2461 tgggtgcagg cggcgaaata taacggctcc agcgactata cctatgccga tatcggcgtg
     2521 accgcgacct acaagggctt cgctttggat ctgcgctaca gcggcaccga tctgaacaac
     2581 acaacctgcg gcttctatat gggcaccaag catgcctgcg ccggcgatgt cgttgccacc
     2641 ctgacctaca acttcgccct gctgccgtaa gcaaggctga agtcaaagta caaaagcccg
     2701 cgagcctcgc ctcgcgggct ttttctttgc taaaagccta ttgcggaaat caggacaagc
     2761 cggcgtgacc atcgaaattc ggaagatcac cggccccacg gatgaggccc gcgcactggt
     2821 cgccgaactg gaacaggaac tggcgcgcca ttacccgccg gagcagcgtc acggcctggc
     2881 cttcgcttcg atcttccagc ccaacatccg gttcttcgtc gcacggcggc agggcgcggc
     2941 tgtgggctgc ggcggcatcg cgctgtg
//
LOCUS       DATMDK010000206         5907 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2379855,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000206 DATMDK010000000
VERSION     DATMDK010000206.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 5907)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5907)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5907
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2379855"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..840)
                     /locus_tag="VNN98_03970"
     CDS             complement(<1..840)
                     /locus_tag="VNN98_03970"
                     /inference="COORDINATES: protein motif:HMM:NF014307.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)(+) transhydrogenase (Re/Si-specific)
                     subunit beta"
                     /protein_id="HWM61280.1"
                     /translation="MSQDFAPDIAALLYLVSGVLFILALKGLSSPATSQAGNRNGMIG
                     MALAIATTLWVAKVSDPVTIGLIIGGLAIGGGIGAVMAKKIAMTQMPQLVAAFHSLVG
                     LAAVFAAGAAFYSPESFGICQLNAGNVCSGVIKTQSLIEMSLGVAIGAITFAGSLIAF
                     AKLNGNMKGAPILLPARHLLNLVLFGCLIALIVYFSMAQPEWTFWAIAGLAFVFGITL
                     IIPIGGADMPVVVSMLNSYSGWAAAGIGFTLENTAMIITGALVGSSGAILSYIMCKGM
                     NRSF"
     gene            complement(842..1141)
                     /locus_tag="VNN98_03975"
     CDS             complement(842..1141)
                     /locus_tag="VNN98_03975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004664154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proton-translocating transhydrogenase family
                     protein"
                     /protein_id="HWM61281.1"
                     /translation="MIDPFVFRLSIFVLAIFVGYFVVWGVTPALHTPLMAVTNAISSV
                     IVVGALVAVAVPVISDASWISKGLGFFALIMASVNIFGGFLVTARMLAMYKKKAK"
     gene            complement(1344..2465)
                     /locus_tag="VNN98_03980"
     CDS             complement(1344..2465)
                     /locus_tag="VNN98_03980"
                     /EC_number="1.6.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001165463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008746 - NAD(P)+ transhydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Re/Si-specific NAD(P)(+) transhydrogenase
                     subunit alpha"
                     /protein_id="HWM61282.1"
                     /translation="MRLAVPKETREAETRVAATPESVKKFKGLGLDIVIQAGAGAGAK
                     IADADYTAAGAIIAPDAASTLKDADIVLKVRGPIGAEISQLKNGAVLAALLAPHAEAE
                     AIQGLAGQGVTAFAMELLPRISRAQSMDVLSSQANLAGYKAVIDAAATFGRAMPMMMT
                     AAGTIAPARVLVMGVGVAGLQAIATAKRMGAIVSATDVRPATKEQVESLGGTFVAVMD
                     EEFKNAQTAAGYAKPMSPEYQAKQAALTAETIKKQDIVITTALIPGRKAPILVTEEMI
                     KTMKPGSVIVDLAAGAGGNTPLSKPDEVVEAHGVTIMGHTNLPGALAVDASSLYARNL
                     FNFISLIVDKKTGALNIDWNDEIIKGSAVTKDGQPVVRG"
     gene            complement(2484..2633)
                     /locus_tag="VNN98_03985"
     CDS             complement(2484..2633)
                     /locus_tag="VNN98_03985"
                     /inference="COORDINATES: protein motif:HMM:NF019452.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aa3-type cytochrome c oxidase subunit IV"
                     /protein_id="HWM61283.1"
                     /translation="MAHESDYKPGSMDISAHKKAYAAFLTGSKWTFGFVMLIMIFLAI
                     FRTHG"
     gene            2887..4401
                     /locus_tag="VNN98_03990"
     CDS             2887..4401
                     /locus_tag="VNN98_03990"
                     /inference="COORDINATES: protein motif:HMM:NF025885.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-54 dependent transcriptional regulator"
                     /protein_id="HWM61284.1"
                     /translation="MAQTILVVDDDPVQRRLLEAAITRSGMTVVTAPGGRPALDLING
                     VRGEQITLMLLDLVMPDMGGLDVLAKLRPTNPDLPVIVLTAKGGIDSAVEAMRAGAND
                     FLVKPASPERITVSIRNQLKIGTLSGEVKQLKKKQDNRLSFDDLVANSPEMKQVFRLG
                     ARAAQSDIPVLIEGESGAGKELIARAIQGTSARAGKPFVTVNCGAIPENLIESILFGH
                     EKGSFTGASDKHLGKFQEADGGTLFLDEIGELRLDMQVKLLRALQEGEVDPVGSKRPV
                     KVDVRIIAATNRDLGAMARDNTFREDLYYRLNVFPVMVPSLRGRAGDIAPLARHFIER
                     FAAEENKAVSGLTPQANQLLEKFNWPGNVRQLENTIFRAVVLCDGSLLDVCDFPQIAA
                     ALGVETVVRQNVPVPAAGGHTATAPMSAYALNATDSSGHIRKFEDMESEIIRMAIARY
                     DGHMSEVARRLGIGRSTLYRKLKEFGLEPELQNEPMAGVAEDTGSVADVVRKAG"
     gene            4405..4764
                     /locus_tag="VNN98_03995"
     CDS             4405..4764
                     /locus_tag="VNN98_03995"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61285.1"
                     /translation="MQKPVCYALWIAFVFGVPAAADYAFGPFPTSSDTDWAVDRIETT
                     AQSVHSTMSEADARHWIDYVKSHSRFNTKQAGALIADVLKYPNITTGSMQSRLDMAIA
                     TVEMLDKAAAEHRSRNS"
     gene            complement(4774..>5907)
                     /locus_tag="VNN98_04000"
     CDS             complement(4774..>5907)
                     /locus_tag="VNN98_04000"
                     /inference="COORDINATES: protein motif:HMM:NF013300.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004560 - alpha-L-fucosidase activity
                     [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-L-fucosidase"
                     /protein_id="HWM61286.1"
                     /translation="RHEWVMENEGIPLSEYEKLADRFVPQRNAARAWAALAKRAGMKY
                     TVMTTKHHEGFCHFDSALTDYCAPKRAAKRDLVREYVDAARAEGLRVGFYYSLMDWHH
                     PDGARCQDDPAARRRFVDYTHGLIRELMTNYGKIDVLWYDVSWPLEAEGWESEKMNQM
                     VFGLQPDIIVNNRNRLAGDFSTPEQRIVAETGGRAWESCMTLNDSWGYQHADDNWKDP
                     RTVIRNLITCAQGGGNYLLNIGPQPDGGIPPESVRILTAVGEWMKTGGETIYGSDICQ
                     PHTSVYSSFTRKANTLYMHVYFWPGSDVSISGLKQKVLSAKVLKTGAVLTVSQDGFRT
                     HITGLPSTAPDSPVTTIAIECDGVPEQDTLNVREHKPRAGIGI"
BASE COUNT         1098 a         1857 c         1895 g         1057 t
ORIGIN      
        1 aaagctgcgg ttcatgccct tgcacatgat gtaggacagg atggcaccgg aggagccgac
       61 cagcgcgccg gtgatgatca tggcggtgtt ctcgagcgtg aagccgatgc cggccgccgc
      121 ccagcccgaa taggaattca gcatcgagac caccaccggc atgtcggcgc cgccaatggg
      181 gatgatcagg gtgatgccaa agacgaaggc aaggccggcg attgcccaga aggtccattc
      241 cggctgggcc atggagaaat agacgatcag ggcgatcagg cagccgaaca ggaccaggtt
      301 cagcaggtgc cgcgccggca gcaggatcgg cgcgcctttc atattgccgt tcagcttggc
      361 gaaggcgatc agcgagccgg cgaaggtgat ggcgccgatg gcgacgccca ggctcatttc
      421 gatcaagctc tgggtcttga tcacgccgct gcagacatta cccgcattca gctggcagat
      481 gccgaaggac tccggcgaat agaaggccgc gcccgccgcg aacaccgccg ccaggccgac
      541 caggctgtgg aaggccgcga ccagctgggg catctgggtc atggcgatct tcttggccat
      601 caccgcaccg atgccaccgc cgatggcgag gccgccgatg atcaggccga tagtcaccgg
      661 atcggagacc ttggccaccc acaaggtggt ggcgatggcc agcgccatgc cgatcatgcc
      721 gttgcggttg cccgcctggc tggtggcggg cgaggacagg cccttcagtg ccaggatgaa
      781 caacacgccg gagacgagat agagcagcgc ggcgatgtcg ggcgcgaagt cctggctcat
      841 ttcacttcgc ctttttcttg tacatcgcca gcatgcgggc ggtgaccagg aagccgccga
      901 agatgttcac cgacgccatg atcagcgcga agaagcccag gcccttggaa atccaggacg
      961 cgtcggagat caccggcacc gcaaccgcga ccagggcacc gaccacgatc accgaggaga
     1021 tcgcattggt caccgccatc aagggcgtgt gcaaggcggg cgtgacgccc cagaccacga
     1081 agtaaccgac aaagatcgcc agcacaaaga tggacaggcg aaagacgaaa ggatcgatca
     1141 tttccatggc gatctcctcc ctctcccccg caaagcgggg gagagggctg gggtgagagg
     1201 gtcgtgcagc gcgcgaattg tcgaagagcc gggctgcgga gaggtccccc tcaccctagc
     1261 cctccacggg gcgcgcttgg ccgcgcgccc gtccttcgga tcccccggag ggggagaggg
     1321 gatatgcagc gcattcccca tcactatccc ctcacgaccg gctggccatc tttcgtaacg
     1381 gcggagcctt tgatgatctc gtcgttccag tcgatgttca gcgcgcccgt cttcttgtcc
     1441 acgatcagcg agatgaagtt gaacaggttg cgggcgtaaa gcgaggaggc gtccaccgcc
     1501 agcgcgcccg gcaggttggt gtggcccatg atggtgacac catgcgcctc caccacttca
     1561 tccggcttgc tgagcggcgt gttgccgccg gcgccggccg ccaagtccac gatcaccgaa
     1621 ccgggcttca tggtcttgat catctcttcc gtcaccagga tcggcgcctt gcggccggga
     1681 atcagcgcgg tggtgatgac gatgtcctgc ttcttgatgg tctcggcggt cagagcggcc
     1741 tgcttggcct gatactccgg gctcatcggc ttggcatagc cggccgcggt ctgggcgttc
     1801 ttgaattcct catccatcac cgcgacgaag gtgccgccaa ggctttccac ctgctccttg
     1861 gtggcggggc gcacgtcggt ggcgctgacg atggcgccca tgcgcttggc ggtggcgatg
     1921 gcctgcagcc ccgccacgcc cacacccatc accagtacgc gcgccggcgc gatggtgccg
     1981 gcggccgtca tcatcatcgg catggcgcgg ccgaaagtgg cagcggcgtc gatcaccgcc
     2041 ttatagcccg ccagattggc ctgggaggac agcacgtcca tcgactgggc gcgggaaatg
     2101 cgcggcagca attccatggc gaaggcggtg acgccctggc ccgccagacc ctggatcgct
     2161 tcggcctcag catggggcgc caaaagggcc gccagaaccg cgccgttctt cagctgggag
     2221 atttcggcgc cgatgggacc gcgcaccttc aggacgatat cggcatcctt gagggtcgag
     2281 gccgcatcgg gcgcaatgat ggcaccggca gcggtataat cggcatcggc gatcttggcg
     2341 cccgcgccgg cgcccgcctg gatcacgatg tccagcccga gacccttgaa tttcttgacg
     2401 gattcgggag tcgcggcaac gcgcgtctct gcctctcgtg tttccttggg gaccgcgagg
     2461 cgcatgatgg gagcctttaa ggcttagccg tgggtgcgga aaatcgcgag aaagatcatg
     2521 atcaacatga cgaacccgaa ggtccatttg gaaccggtca ggaaggcggc ataggccttc
     2581 ttgtgggcgc tgatgtccat ggatcccggc ttgtagtcgg attcgtgcgc cattaaggcc
     2641 ctcttattgt ccgtaaagtg gccggactat agcaaaggcg ccagcacggg caacgtggtt
     2701 tattaagcct gtccggcagg gtgtgggcct gttccggcgc cccgccggcg cgcaaatggg
     2761 cgcgattcag ctttggttaa gcatcgaatc gttctttgcg gcctgtaccg caaaggaaca
     2821 ggcttaaacg ccacatttac ctgtgctccc gcagagtccc gtctcatttg gcagaggcgt
     2881 agtgtcatgg cgcagaccat tctggtggtg gacgacgatc cggtgcagcg gcgcctgctg
     2941 gaagcagcga tcacccgcag cggcatgacg gtcgtcaccg cccccggcgg ccggcctgcg
     3001 ctggacctga tcaacggcgt ccgcggcgag cagatcactt tgatgctgct ggatcttgtg
     3061 atgcccgaca tgggcgggct ggacgtgctg gccaagctgc gccccaccaa tcccgacctg
     3121 ccggtgatcg tgttgaccgc caagggcggc atcgattccg ccgtggaagc catgcgcgcc
     3181 ggcgccaacg attttctggt caagccggcc agcccggaac gcattactgt ctccatccgc
     3241 aaccagctca agatcggcac cctgtcgggt gaagtgaagc agctgaagaa gaagcaggac
     3301 aaccgcctct ccttcgacga cctggtcgcc aattcgccgg agatgaagca ggtgttccgc
     3361 ctgggcgcgc gcgccgccca atccgatatt cccgtgctga tcgaaggcga atcgggcgcc
     3421 ggcaaggaac tgatcgcccg cgctatccag ggcacctcgg cgcgtgccgg caagcccttc
     3481 gtgaccgtga attgcggcgc gatcccggag aacctgatcg aatccattct gttcggccac
     3541 gagaagggct ccttcaccgg cgccagcgac aagcatctgg gcaagttcca ggaagccgat
     3601 ggcggcaccc tgttcctgga cgagatcggc gagttgcgcc tggacatgca ggtcaagctg
     3661 ctgcgggcgc tgcaggaagg cgaagtggac ccggtgggct ccaagcgccc ggtgaaagtg
     3721 gatgtgcgca tcatcgccgc caccaaccgc gacctgggcg ccatggcccg cgacaacacc
     3781 ttccgcgaag acctttatta ccgcctgaac gtgtttcccg ttatggtgcc gtccctgcgc
     3841 ggccgcgccg gcgacatcgc gccgctggcg cgtcatttca tcgagcgttt cgcggccgaa
     3901 gaaaacaagg cggtgtcggg cctcaccccc caggccaacc agttgctgga aaagttcaac
     3961 tggccaggca atgtgcgcca gctggaaaac accatcttcc gcgccgtggt gctgtgcgat
     4021 ggctcgttgc tggatgtctg cgatttcccc cagatcgccg cggcgctggg cgtcgagacc
     4081 gtggtgcgcc agaatgtgcc agtgccggcc gccggcggcc atacggccac cgcgccgatg
     4141 tccgcctatg cgttgaacgc caccgactcg tccggccata tccgcaaatt cgaggacatg
     4201 gaatcggaaa tcatccgcat ggccatcgcc cgttatgacg gccacatgtc ggaagtggcg
     4261 cgccgcctgg gcatcggccg ctcgaccctc tatcgcaagc tgaaggaatt cggcctggag
     4321 ccggaactgc agaacgagcc catggcgggt gtggccgaag ataccggctc ggtcgcggat
     4381 gtcgttcgca aggccgggtg agccatgcag aagccggttt gctacgccct gtggatagcc
     4441 ttcgtcttcg gggttcctgc agccgcagac tatgcgttcg ggcctttccc gacgtccagc
     4501 gacaccgact gggccgtcga ccggatcgaa accacggcgc aatccgtaca cagcacgatg
     4561 agcgaagctg acgcgcgcca ttggatcgac tatgtcaaat cccactcccg cttcaacaca
     4621 aagcaagcag gcgctctgat cgcggatgtc ctgaagtatc caaacatcac aaccggatcc
     4681 atgcagtcaa ggctggatat ggctatcgcg actgtggaga tgctcgacaa ggctgctgca
     4741 gagcatagaa gtcgaaacag ctgaagctgc gttctatatc ccgattccag ccctcggctt
     4801 gtgttcgcgc acattcagcg tgtcctgctc cggcacgccg tcgcattcga tggcgatggt
     4861 ggtgacgggc gagtccggcg cggtggacgg caaccccgtg atgtgggtgc ggaacccgtc
     4921 ctgactcacc gtcagcacag ccccggtctt caggactttc gccgacagaa ccttctgctt
     4981 caggccggag atggagacat cactgcccgg ccagaaatag acatgcatgt agagcgtgtt
     5041 ggctttgcgg gtgaagctgg aatagacgga ggtgtgcggc tggcagatgt cggacccata
     5101 gatcgtctcg ccgccggtct tcatccattc gcccacggcg gtgaggatgc gcacgctttc
     5161 cggtgggatg ccaccgtcgg gctgcggccc gatattcagc agataattgc cgccgccctg
     5221 ggcgcaggtg atcaggttgc ggatcacggt gcgcgggtct ttccaattgt cgtcggcgtg
     5281 ctgatagccc catgaatcgt tcaaggtcat gcagctttcc caggcgcggc cgccggtttc
     5341 cgccacgatg cgctgttcgg gggtggagaa atcgccggcc aaccggttgc ggttgttgac
     5401 gatgatgtcg ggctgcaggc cgaacaccat ctggttcatc ttttccgatt cccagccctc
     5461 ggcctccaag ggccaggaga cgtcgtacca caggacatcg atcttgccgt agttggtcat
     5521 caactcgcgg atcaggccgt gggtgtaatc gacaaaacgc cgccgcgccg ccggatcatc
     5581 ctggcaacgg gcgccgtcgg gatgatgcca gtccatcagc gagtagtaga agccgacgcg
     5641 cagcccctcg gcgcgcgcgg cgtcgacgta ttcgcggacg agatcgcgtt tggcggcgcg
     5701 cttcggagcg cagtagtcgg tcagcgccga atcaaagtgg cagaagccct catggtgctt
     5761 cgtcgtcatc accgtgtact tcatgcccgc gcgtttggcg agcgcggccc atgcacgcgc
     5821 ggcgttccgt tggggcacga accgatcggc gagcttctcg tactctgaga gcgggatgcc
     5881 ctcgttctcc atcacccact catgacg
//
LOCUS       DATMDK010000207         7095 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_91026,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000207 DATMDK010000000
VERSION     DATMDK010000207.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 7095)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7095)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7095
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_91026"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..836
                     /gene="trpS"
                     /locus_tag="VNN98_04005"
     CDS             <1..836
                     /gene="trpS"
                     /locus_tag="VNN98_04005"
                     /EC_number="6.1.1.2"
                     /inference="COORDINATES: protein motif:HMM:TIGR00233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004830 - tryptophan-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006436 - tryptophanyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="tryptophan--tRNA ligase"
                     /protein_id="HWM61287.1"
                     /translation="RATREVTAAYIAGGVDTSRSPIFNQGQVPEHAELAWVLNCVARL
                     GWMDRMTQFKEKSGKHKERASVGLYTYPVLMAADILVYKATHVPVGEDQKQHLELARD
                     IAAKFNNDFGVPDFFPQPEPVITGTATRVMSLRDGTKKMSKSDESDNSRINLTDDADT
                     IAGKIKRAKSDSHPLPASKDELKDRPEAENLLNIYAALADQDRDTVMREFAGQQFSTF
                     KTALADLTVAKLGPITAQMRRLLADPAEIDRVLKDGAAKARAIAAPIMDQVKKTVGFV
                     A"
     gene            865..2247
                     /locus_tag="VNN98_04010"
     CDS             865..2247
                     /locus_tag="VNN98_04010"
                     /inference="COORDINATES: protein motif:HMM:NF013791.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_component: GO:0070069 - cytochrome complex [Evidence
                     IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0019646 - aerobic electron transport chain
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome ubiquinol oxidase subunit I"
                     /protein_id="HWM61288.1"
                     /translation="MTLDPLILSRLQFAWVVAWHILLPALTIGLASYIALLEGIWFVT
                     GKEIWFRISAFWTRIFAVAFGMGVVSGVVMPFQFGTNWSRFSDATANIISPMLAYEGL
                     TAFTLEAGFLGVLLFGRKLVPRWAHFASAVLVAAGTLLSTFWILVTNSWMQTPGGYRI
                     ADGIFYPTSWMDIIFTASFPYRFMHTVAAFYVTTGFVVMGVAGYLLRQKKSAPEARLM
                     LSITLWLLTLMVPLQILLGDMHGLNTLHHQPAKLAAIEAHWNREARAPLALFAIPDQK
                     AEINRHAIEAPLLGSLILTHDVNGVVPGLKDYPREDRAPVIIPFFAFRIMVGVGLLML
                     AIMLAGLWLRMRGKLYDRDWFLRVLMWASPLGFIAVVAGWTTTEVGRQPWTVYGVMRT
                     AASVTPSLTGLDVLLSLAGYVAAYAIMFPAGLLMVRRIVRGGVSQEENLPVGGGRQSA
                     PVKPVPGGAS"
     gene            2244..3251
                     /gene="cydB"
                     /locus_tag="VNN98_04015"
     CDS             2244..3251
                     /gene="cydB"
                     /locus_tag="VNN98_04015"
                     /EC_number="7.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017980834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016682 - oxidoreductase activity, acting
                     on diphenols and related substances as donors, oxygen as
                     acceptor [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome d ubiquinol oxidase subunit II"
                     /protein_id="HWM61289.1"
                     /translation="MILDFVPVWTLILGLAVFFYVLLDGFDLGVGILYNFAGTTAARN
                     LLMNSIAPIWDGNETWLVLGGLGLLAAFPLAFAIILPAVYFPILVMLLALIFRGVAFE
                     FRFRDTEHRTFWDHAFGYGSIVATFAQGVVLGAFIQGFKVEGRHFTGGSFDCFTPFSL
                     FTGVALLFGYGLLGAGWVILKTEGQLQAQARRAARICFLGTLAAVGIVSTWTPLVDGD
                     IAQRWFSWPNIAFLAPVPLLTALFGLLEWRAITNPKAELQPFAYAVLLFSLSYLGIAI
                     SLFPMIVPHHYSLWQAASSPDTQIFLGAGTLFLLPVILVYTGWSYWVFRGKVRADTGY
                     H"
     gene            3255..4007
                     /locus_tag="VNN98_04020"
     CDS             3255..4007
                     /locus_tag="VNN98_04020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020045259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HWM61290.1"
                     /translation="MLKNVLVTGAAKRLGRAIALDLAADGWNVAIHYHGSEEDADSAV
                     QAARAFGVEAAGLKCDLSREAETAALVDRAAKEVGPLTALINSASLFENDDWRSATRK
                     TWDDHIETNLRAPLLLSQMFAKQLPEGERGNIVNIVDQRVLKPTPQFLSYSVSKAGLY
                     WLTTTLAQGMGPRIRVNAVGPGPTLKNPRQSDADFNRQRDATILGRGADPADICSAVR
                     YLLTAEAVTGQMLAVDGGQHLIWQTPDVQVSE"
     gene            4004..4390
                     /gene="folB"
                     /locus_tag="VNN98_04025"
     CDS             4004..4390
                     /gene="folB"
                     /locus_tag="VNN98_04025"
                     /EC_number="4.1.2.25"
                     /inference="COORDINATES: protein motif:HMM:TIGR00526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004150 - dihydroneopterin aldolase
                     activity [Evidence IEA];
                     GO_process: GO:0006760 - folic acid-containing compound
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroneopterin aldolase"
                     /protein_id="HWM61291.1"
                     /translation="MSKIEIPRIAGAGTRHVFIRNLELPAHIGVYRQEEGRTQPVRIN
                     VDLATDDLADAQDMLENVVDYHVIEKRIRAIIAEGHVRLAETLAERIAAACFEDARVR
                     TVRVRVEKLAALTHAESVGIEIERTR"
     gene            4403..6289
                     /gene="uvrC"
                     /locus_tag="VNN98_04030"
     CDS             4403..6289
                     /gene="uvrC"
                     /locus_tag="VNN98_04030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020045260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009380 - excinuclease repair complex
                     [Evidence IEA];
                     GO_function: GO:0009381 - excinuclease ABC activity
                     [Evidence IEA];
                     GO_process: GO:0006289 - nucleotide-excision repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrC"
                     /protein_id="HWM61292.1"
                     /translation="MSSDPQTPLKGVDRIAAYLKTLPDAPGVYRMLNAAGDVLYVGKA
                     KSLKKRVGSYALRGNHNERISRMIAETAEMLFLTTESETEALLLESNLIKRLKPRYNV
                     SYRDDKSFPNILLREDHPFPQLLKHRGAKTIKGVYFGPFASAGAVNRTLNTLQRAFLL
                     RSCSDSVFESRTRPCLLFQIKRCSGPCVNRIDRDGYHELVEEAENFLNGKSQTVQNEI
                     KSEMTRASEAMDFEAAAKLRDRLKAMSHIQSSQGVNPSTFVEADLFAAYSEGGHTCIQ
                     VFFFRAGQNWGNRPYFPRHAGDLPLGEVLESFVGQFYDERTAPKLILTSEELPGRDLL
                     AEALGLRAEHRVEISSPQRGEKREIMERALTNAREQLGRRMAENSAQTQLLEGVADLF
                     GLEQPPRRIEVYDNSHIQGAHALGAFIVAGPEGFEKAHYRKFNIKAEDLAPGDDYAMM
                     REVLTRRFARMVKEEAEPSESGKPDTAGWKRPDLVLIDGGPGQLSIACQVFADLGVED
                     VALAGISKGPDRDAGREHFYMPGKEPFRLDPKSPVLYYLQRLRDEAHRFVIGGHRKKR
                     SAAIGANPLDEIAGVGAGRKRALLQHFGSARAVAGASLADLSSVSGVSETLAKKIFDF
                     FHAT"
     gene            6422..7072
                     /gene="pgsA"
                     /locus_tag="VNN98_04035"
     CDS             6422..7072
                     /gene="pgsA"
                     /locus_tag="VNN98_04035"
                     /EC_number="2.7.8.5"
                     /inference="COORDINATES: protein motif:HMM:TIGR00560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008444 -
                     CDP-diacylglycerol-glycerol-3-phosphate
                     3-phosphatidyltransferase activity [Evidence IEA];
                     GO_process: GO:0008654 - phospholipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-diacylglycerol--glycerol-3-phosphate
                     3-phosphatidyltransferase"
                     /protein_id="HWM61293.1"
                     /translation="MFALPNALTILRILLVPVFVVAFVIPGDAARLVAFAVFALAGIS
                     DWLDGFAARKLKAGSDFGRMLDPIADKVLVAVALMMLVAEGTFTRYNANTGMLSLLRL
                     FPALIILGREILVSGLREFLAGTRVSVPVTAVAKFKTAVQMIAIGAMILTPLADVFAP
                     GIPALTYAAMAYILLWVAAALTVYTGVIYFKNGIAYLRPGPTPEIREEPPRLHEPA"
BASE COUNT         1248 a         2276 c         2185 g         1386 t
ORIGIN      
        1 ctcgcgccac ccgcgaagtg acggcggcct atatcgccgg cggcgtggac accagccgct
       61 cgcccatctt caaccagggc caggtgcccg aacatgccga actggcctgg gtgctcaatt
      121 gcgtggcgcg gctgggctgg atggaccgca tgacccagtt caaggaaaag tcgggcaagc
      181 acaaggaacg cgccagtgtg ggcctgtaca cctatcccgt gctgatggcc gccgacatcc
      241 tggtctacaa ggccacccat gtgccggtgg gcgaggacca gaaacagcat ctggaactgg
      301 cgcgcgacat cgccgccaag ttcaacaatg atttcggcgt gccggatttc tttccccagc
      361 ccgaaccggt gatcaccggc acggcaacgc gggtgatgag tttgcgcgac ggcaccaaga
      421 aaatgtccaa gtcggatgag agcgacaata gccgcatcaa cctgaccgac gatgccgaca
      481 ccatcgcggg caagatcaag cgcgccaaga gcgactccca tcccttgccc gccagcaagg
      541 acgaattgaa ggaccggccg gaagcggaaa acttgctgaa catctatgcc gccttggccg
      601 atcaggaccg cgacacggtg atgcgcgagt tcgccggcca gcaattctcc accttcaaga
      661 ccgcgctggc cgacctgacc gtcgccaaac tgggccccat caccgcgcaa atgcgccggc
      721 tgctggccga cccggcggaa atcgaccgcg tcctgaaaga cggcgccgcc aaagcccgcg
      781 ccatcgccgc gccgatcatg gatcaagtga aaaagaccgt cggcttcgtc gcctgaagtg
      841 cccggttgcg ctagactggc gggcatgacc ttggacccgc tgatcctgtc ccgcctgcaa
      901 ttcgcctggg tcgtcgcctg gcacattctg ctgccggccc tgaccatcgg cttggcctcc
      961 tatattgcgc tgctggaagg catctggttc gtcaccggca aagaaatctg gtttcgcatc
     1021 tccgccttct ggacccggat tttcgccgtg gccttcggca tgggtgtggt gtcgggcgtg
     1081 gtgatgccgt tccagttcgg caccaattgg agccgtttct ccgacgccac cgccaatatc
     1141 atttcgccca tgctggccta tgaaggcctt accgcattca ccctggaggc aggttttctg
     1201 ggtgtgctgc tgttcgggcg caagctggtg ccgcgctggg cgcattttgc gtcggcggta
     1261 ctggtggcgg ctggcaccct gctctccacc ttctggattt tggtgaccaa cagctggatg
     1321 cagactccgg gcggctaccg catcgcggat ggcatcttct atcccaccag ctggatggac
     1381 atcatcttca ctgcgtcttt cccttatcgc ttcatgcaca ccgtcgcggc cttttatgtg
     1441 acgacgggtt ttgtggtgat gggcgtggcc ggctatctgt tgcggcagaa aaaatccgcg
     1501 cccgaagcca ggctgatgct gtccatcact ttgtggctgc tgaccttgat ggtgccgctg
     1561 caaatcctgc tgggcgacat gcacgggttg aacaccctgc atcatcagcc cgccaaactg
     1621 gccgccatcg aggcgcattg gaatcgcgag gcccgcgcgc cgctcgcgct gttcgccatt
     1681 cccgatcaga aggcggaaat caaccgtcat gcgattgaag ccccgctgct gggcagcctg
     1741 atcctgaccc atgacgtcaa cggcgtggtg ccggggctca aagattatcc gcgcgaagac
     1801 cgcgcgcccg tcatcattcc cttcttcgcc ttccgcatca tggtcggcgt gggtttgctg
     1861 atgttggcaa tcatgctggc gggactttgg ctgcgcatgc gcggaaaact ctatgaccgc
     1921 gactggtttc tgcgtgtgct gatgtgggcg tctccgctcg gcttcattgc cgtggtcgca
     1981 ggctggacca ccaccgaagt ggggcgccag ccctggaccg tttatggcgt gatgcggacg
     2041 gcggcgtcgg tgacgccgtc gctgaccggc ttggacgtgc tgctgtccct ggcgggctat
     2101 gtcgcggcct atgccatcat gtttcccgcc ggcctgctga tggtccggcg catcgtgcgc
     2161 ggcggcgttt cccaggaaga gaacctgccg gtgggcggcg gccgtcagtc cgcacccgtc
     2221 aagccggtac cgggaggcgc gtcatgattc tcgattttgt gcccgtctgg acgctgatcc
     2281 tgggcctggc cgtattcttc tatgtcctgc tggacggctt cgatctggga gtcggcattc
     2341 tctacaattt cgccgggacg acggcagcgc gcaatctgct gatgaattcc atcgcgccga
     2401 tctgggacgg caatgagacc tggctggtgc tgggaggcct tggacttctg gctgcctttc
     2461 cgctggcctt cgccatcatc ctgcccgcgg tctatttccc tatcctggtg atgctgctgg
     2521 cgctgatctt ccgcggcgtg gcgtttgaat tccgtttccg cgacacagag caccgcacct
     2581 tctgggatca tgctttcggt tacggctcca tcgtcgccac cttcgcgcaa ggcgtggtgc
     2641 tgggcgcctt cattcaaggc ttcaaggtgg aaggccggca tttcaccggc ggcagctttg
     2701 attgcttcac gcccttctcg ctgttcaccg gtgtggcgtt gctgttcggc tatggcctgc
     2761 tcggtgcggg ctgggtgatc ctcaagaccg aaggccaatt gcaggcgcag gcgcgccggg
     2821 cggcgcgtat ctgctttctg ggcaccttgg cggcggtcgg cattgtcagc acttggacac
     2881 cgctggtgga cggcgacatc gcgcagcgct ggttttcctg gcccaacatt gccttcctcg
     2941 cccccgtgcc gctgctgacc gccctgttcg gcctgctgga gtggcgggcg atcaccaatc
     3001 cgaaagcgga gttgcagccc tttgcctatg ccgtgctgct gttcagcctg tcttatctgg
     3061 gcatcgccat cagcctgttt cccatgatcg tgccgcatca ttattccttg tggcaggccg
     3121 cctcgtcgcc ggatacgcag attttcctgg gggccggcac cttgttcctg ctgccggtga
     3181 tcctggtcta taccggctgg tcttattggg tgttccgggg caaggtgcgc gccgacaccg
     3241 gataccacta gcctatgctg aaaaatgttc ttgtcaccgg cgcggccaag cggttgggac
     3301 gcgccatcgc cctggatctg gcggccgatg gctggaacgt ggcgatccat tatcatggct
     3361 cggaagaaga tgccgacagc gccgtccagg cggcgcgcgc ctttggcgtg gaagccgctg
     3421 gcctgaaatg cgatctttcc cgggaagccg agaccgccgc cctggtggac cgcgccgcca
     3481 aggaagtggg gccgctgacg gcgctgatca attccgcatc cctgttcgag aatgacgact
     3541 ggcggagcgc cacccgcaag acctgggatg accatatcga gaccaacctg cgcgccccgc
     3601 tgctcttgtc gcagatgttt gcaaaacagc ttcccgaagg cgaacgcggc aacatcgtca
     3661 atatcgttga ccagcgcgtg ctgaagccga cgccgcaatt tctttcttac agcgtcagca
     3721 aggcggggct ttactggctg accacgacct tggcccaggg catggggccg cgcatccgcg
     3781 tcaatgccgt gggccccggt ccgactttga aaaatccccg ccagtcggat gccgacttca
     3841 accgccagcg cgatgccacc atcctggggc gcggcgccga tccggccgac atctgttccg
     3901 cggttcgcta tctgctgaca gccgaagccg tcaccggcca gatgctggcg gtggacggcg
     3961 gccagcattt gatctggcag acgccggatg tgcaggtcag cgaatgagca agatcgaaat
     4021 cccccgcatc gccggcgccg gtacccgtca cgtcttcatc cgcaacctgg aactgccggc
     4081 ccatatcggc gtctaccgcc aggaagaagg ccgcacccag cccgtgcgca tcaatgtgga
     4141 cctggccacc gacgatctgg ccgacgccca ggacatgctg gaaaatgtgg tggactatca
     4201 tgtgatcgaa aagcgcatcc gcgccatcat cgccgaaggc catgtccggc tggcggaaac
     4261 cctggccgaa cgcatcgcgg cggcctgttt cgaggatgcc agggtgcgca cggtacgggt
     4321 gcgggtggaa aagttggcgg ctttgaccca tgcggaaagc gtcggcatag aaattgagcg
     4381 cacgcgctaa tatattggct gcatgagttc cgacccgcaa acgcccctga agggcgtgga
     4441 ccgcatcgcc gcctatctca agaccctgcc cgatgcgccg ggggtttacc gcatgctgaa
     4501 tgcagcgggc gacgtgctct atgtcggcaa ggccaagagc ctgaagaagc gcgtcggctc
     4561 ctatgccctg cgcggcaatc acaacgagcg catcagccgg atgatcgcgg aaacggccga
     4621 gatgctgttt ctcaccaccg agtccgaaac cgaagcgctg ctgctggaat ccaacctgat
     4681 caagcggcta aagccgcgct acaatgtttc ctatcgcgac gacaaaagct ttcccaacat
     4741 cctgctgcgc gaggatcacc cctttcccca gctgctcaaa catcgcggcg ccaagaccat
     4801 caagggcgtt tatttcgggc cgttcgcgtc agcgggggcc gtgaaccgta ccctcaacac
     4861 cctgcagcgc gccttcctgc tgcgctcctg ttcggattcg gtgttcgaat cgcgcacccg
     4921 cccctgcctg ctgttccaga tcaagcgctg cagcggccct tgcgtgaacc gcatcgacag
     4981 ggacggctat cacgaactgg tggaggaagc ggaaaatttc ctcaacggaa aaagccagac
     5041 ggtgcagaac gagatcaagt cggagatgac gcgcgcctcc gaggcgatgg atttcgaggc
     5101 ggccgccaaa ctgcgcgacc ggctcaaggc catgagccat atccaatcgt cgcaaggtgt
     5161 gaacccttcc acctttgtgg aggccgacct gttcgctgct tacagcgaag gcggccacac
     5221 ttgtatccag gtcttctttt tccgcgccgg gcagaattgg ggcaaccgcc cctatttccc
     5281 gcgccatgcc ggcgatctgc ccctgggtga agtgctggaa agctttgtcg gccaattcta
     5341 cgacgaacgc accgcgccca aactgatcct cacatccgag gaattgcccg gccgcgactt
     5401 gctggccgaa gccttggggc tgcgggccga acatcgggtg gaaatctcca gcccccagcg
     5461 cggcgaaaag cgcgagatca tggaacgggc tttgaccaat gcccgcgaac agctgggccg
     5521 ccgcatggcc gagaacagcg cccagaccca gctcttggaa ggcgtggccg acctgttcgg
     5581 gctggaacag ccgccgcgcc gcatcgaggt ctatgacaat tcccatatcc aaggcgccca
     5641 tgccctgggc gccttcattg tcgccggacc ggaaggcttc gagaaagcgc attaccgcaa
     5701 gttcaacatc aaggcggaag acctcgcccc cggcgacgat tacgccatga tgcgcgaagt
     5761 gctgacccgc cgcttcgccc gcatggtgaa ggaagaggct gaaccctctg aaagcggaaa
     5821 gcccgacact gccggatgga agcgtcccga tctggtactg atcgatggcg ggccgggcca
     5881 gctttccatc gcctgccagg tcttcgccga tctgggggtg gaggatgtgg cgctggcggg
     5941 catttccaaa ggtcccgacc gcgacgccgg acgcgagcat ttctatatgc ccggcaagga
     6001 gccgttccgc ctcgatccca aaagcccggt tctgtattat ttgcaacgct tgcgtgacga
     6061 ggcgcaccgt tttgtgatcg gcggccaccg caagaagcgc agcgccgcca tcggggccaa
     6121 cccgctggat gagatcgctg gtgtgggggc ggggcgcaag cgggccttgt tgcagcattt
     6181 cggctccgcc cgcgccgtgg cgggggccag cctggccgat ctttcgtccg tttcgggcgt
     6241 aagcgagacc ctggccaaga aaatcttcga tttctttcac gcgacctgag catcgggcag
     6301 ccgagcgcag cgaaggcaat ggcgccggag gcgcccttaa acaaaggggc gcatccgcgc
     6361 ccgggccgtg cgaccaaaag taaaggatga ccttagcgta gagggcttct aaactggccc
     6421 catgttcgcc ctgcccaacg cccttaccat cctgcgcatc ctgctggtgc cggtctttgt
     6481 tgtcgccttt gtcatccctg gcgacgccgc gcggctggtg gccttcgcgg tcttcgccct
     6541 ggcggggatc agcgactggc tggatggttt cgccgcccgc aagctgaagg ccggttcgga
     6601 tttcggccgc atgctggacc ccatcgccga caaggtgctg gtggcggtgg cgctgatgat
     6661 gctggtcgcc gaaggcacct tcacccgcta caacgccaat accggcatgc tcagcctgct
     6721 caggctgttt ccggcgctga tcatcctggg acgcgagatc ctggtgtcgg gactgcgcga
     6781 gtttctggcc ggcacaaggg tcagcgtgcc ggtcacggcg gtggccaagt tcaagaccgc
     6841 agtgcagatg atcgccatcg gggccatgat cctcaccccc ctggccgatg ttttcgcgcc
     6901 cggcataccg gcgctgacct atgcggcgat ggcctatatc ctgttgtggg tggccgccgc
     6961 cctcaccgtc tataccggcg tgatctattt taagaacggc atagcctatc tacgccccgg
     7021 tcccacgccg gaaattcgtg aagaaccgcc gcggctgcac gagccggcgt gagcagaagc
     7081 taggccgaaa cggtg
//
LOCUS       DATMDK010000208         3078 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1936412,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000208 DATMDK010000000
VERSION     DATMDK010000208.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3078)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3078)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3078
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1936412"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1088
                     /locus_tag="VNN98_04040"
     CDS             <1..1088
                     /locus_tag="VNN98_04040"
                     /inference="COORDINATES: protein motif:HMM:NF015013.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="lipid II flippase MurJ"
                     /protein_id="HWM61294.1"
                     /translation="SAMLNAIEKFWAAAAWSNFQNLAMIATLIAWHWFPNAAYAAAWG
                     VTLGGVAQLIFILWAGAREGLWLTFTWPRWSPEIGEFFKAFGAVTTGATSSVISPFID
                     TILASWLPVGSRTALYYGDRINQLPLGVLGAALGTVLLPEMSARLARGDTKGSHAAQN
                     RSAAMSLLLTLPFMVAFIVIPDTIMSAYLAHGAFQHDAAGAAAAALAAYGVGLPAMAM
                     IRIVQSTFYARHDTMTPVRATVTAVAINIAAKIFFVWGLHMGIAGIALGTAIGAWTNV
                     GILVWLGRSRDLLAIEKIFLRALPVSLLAALACGAGAWAGANLLKAHGDVAALAAGIV
                     CAVLGYGAVLLLFRGRLSLQSGKGRAA"
     gene            1085..1639
                     /gene="thpR"
                     /locus_tag="VNN98_04045"
     CDS             1085..1639
                     /gene="thpR"
                     /locus_tag="VNN98_04045"
                     /inference="COORDINATES: protein motif:HMM:TIGR02258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008664 - 2'-5'-RNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA 2',3'-cyclic phosphodiesterase"
                     /protein_id="HWM61295.1"
                     /translation="MRFFVALAVPDAVARALLLLEGGVPGARWQTREQMHLTLRFIGE
                     VDGRDARALDDALAGIEAPAFELQLHGVGQFGNKQPHSLWAGLRKHEMLDHLQRKVDN
                     AIRKVGQPQDAHKFLPHVTLARLRHPDLDKLREWLVAHALFTSDEFTVSAFCLYSSKL
                     TIDGSIYRVEQEYPLRGYDDEIGD"
     gene            1620..1928
                     /locus_tag="VNN98_04050"
     CDS             1620..1928
                     /locus_tag="VNN98_04050"
                     /EC_number="4.2.1.96"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017980223.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4a-hydroxytetrahydrobiopterin dehydratase"
                     /protein_id="HWM61296.1"
                     /translation="MTKLAIEELKAALKRLPDWALVKDREAITRKFQFVDFDAAFAFM
                     TRAALLAAKMDHHPEWFNVYNKVDVTLATHDADGVTQKDIDLATAMDGYAVVGRRTTA
                     "
     gene            2096..2248
                     /locus_tag="VNN98_04055"
     CDS             2096..2248
                     /locus_tag="VNN98_04055"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61297.1"
                     /translation="MAIKNSGGANILIGFLLGVVLTGIVVAGFFAWDNYKRHAHAAAP
                     ASDQRP"
     gene            complement(2236..2391)
                     /locus_tag="VNN98_04060"
     CDS             complement(2236..2391)
                     /locus_tag="VNN98_04060"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61298.1"
                     /translation="MFIFLYVLAAMGVAYWAKLDRRRPGVWFAASLLLTPLGGSIALM
                     IADRYGR"
     gene            complement(2393..>3078)
                     /locus_tag="VNN98_04065"
     CDS             complement(2393..>3078)
                     /locus_tag="VNN98_04065"
                     /inference="COORDINATES: protein motif:HMM:NF024591.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61299.1"
                     /translation="HLITPLPGATDLKPGSATRPLPGIVPELVDADGKVLEGAASGNL
                     CIAQSWPGQMRSVYGDHQRFVDTYFKAYRGKYFTGDGCRRDEDGYYWITGRVDDVINV
                     SGHRMGTAEVESALVGHRDVAEAAVVGYPHDIKGQGIYAYVTLNAGVAASDALNDELK
                     KFVGHEIGPIARPDVIQFAPGLPKTRSGKIMRRILRKIAEGDTSSLGDISTLADPSVV
                     DDLIKHARK"
BASE COUNT          519 a          970 c         1013 g          576 t
ORIGIN      
        1 tgtcggccat gctcaacgcc atcgagaaat tctgggccgc cgccgcctgg tcgaatttcc
       61 agaacctggc catgatcgcg accctgatcg cctggcactg gtttcccaac gccgcctatg
      121 ccgccgcctg gggcgtcacc ctgggcgggg tggcgcagct gatcttcatc ctctgggcgg
      181 gtgcgcgcga aggattgtgg ctcactttca cctggccgcg ctggtcgccg gagatcgggg
      241 aattcttcaa ggcctttggc gcggtcacca ccggggcaac gtcttcggtg atttcgccct
      301 ttatcgacac cattctggcc agctggctcc cggtcggcag ccgcaccgcg ctttactatg
      361 gcgaccgcat caaccagttg ccgctagggg tgctgggcgc ggcgctgggt acggtgctgt
      421 tgccggaaat gtcggcgcgg ctggccaggg gtgacaccaa aggctcgcat gccgcgcaga
      481 accgcagcgc ggcaatgagc ctgctgctca ccttgccctt catggtcgcc ttcatcgtca
      541 ttcccgacac catcatgagc gcctatctgg cgcatggcgc cttccagcat gacgccgcgg
      601 gcgcggcggc ggctgcgctg gcggcctatg gcgtcggatt gccggccatg gcgatgatcc
      661 ggatcgtgca atccaccttt tatgcccgtc acgacaccat gacgccggtg cgcgccaccg
      721 tgaccgcggt cgccatcaat atcgccgcca agattttctt tgtctgggga ctgcatatgg
      781 gcatcgccgg catcgcactg ggcaccgcca tcggggcctg gaccaatgtc ggcatcctgg
      841 tctggcttgg ccgcagccgc gacctgctgg cgatcgaaaa gattttcctg cgcgccttgc
      901 cggtctcgct gctggcggcg ctggcctgcg gcgcgggtgc ctgggcaggc gcgaacctgc
      961 tgaaagcgca tggcgatgtc gcggcgctgg cggcggggat tgtctgcgcc gtgctgggtt
     1021 atggcgcggt gctgttgttg ttccgtggcc ggctgtccct acaatccggc aagggccgtg
     1081 ccgcatgaga ttctttgtag ccttggccgt tcccgatgcg gtggcgcggg cgctgctgct
     1141 gcttgagggc ggggtgcctg gcgcgcgctg gcagacgcgc gagcagatgc acctgaccct
     1201 gcgcttcatc ggcgaagtgg acggacgcga tgcccgcgcc ctcgatgacg ccctggcggg
     1261 cattgaggcg ccggccttcg agctgcaact gcatggcgtg ggccagttcg gcaacaagca
     1321 gccgcatagc ttatgggcgg ggctgcgcaa gcacgagatg ctggaccatc tgcagcgcaa
     1381 ggtggacaac gccatccgca aagtcggcca gccgcaagac gcgcacaaat tcctgccgca
     1441 tgtgaccttg gcgcggctgc gccatcccga cctggacaag ttgcgcgagt ggctggtcgc
     1501 acatgcgctg tttaccagcg acgaatttac cgtgagcgcg ttctgtcttt attccagcaa
     1561 gctgaccatc gacggcagca tctaccgcgt ggaacaggaa tatccactaa gaggctacga
     1621 tgacgaaatt ggcgattgaa gaattgaagg ccgcgctcaa gcggctgccc gattgggcgc
     1681 tggtgaagga ccgcgaggcg atcacgcgca agttccagtt cgtggatttc gacgccgcct
     1741 tcgccttcat gacgcgcgcc gccctgctgg ccgccaagat ggatcaccat cccgaatggt
     1801 tcaatgtcta caacaaagtg gacgtgaccc tggccaccca cgacgcggac ggcgttaccc
     1861 agaaggatat tgatctcgca actgccatgg atggctatgc cgttgttggg cgacgcacga
     1921 ccgcgtagcg ggcaaatcgg tccgtgagaa gcctctcgcc gaaggcgagc gaaatggtcc
     1981 agtggaccat ttcgagcgac gaacgaccga tttgagcgag gagcgccgcg agcacaagcc
     2041 agcggccgga tagcggcgct agggaaccgt cgacccggga acccgttctg catctgtggc
     2101 tatcaaaaat tctggcggcg ccaacattct gatcggattt ctgctgggcg tggtgctgac
     2161 cggcatcgtt gtggccggct ttttcgcctg ggacaattac aagcgccacg cccacgcagc
     2221 cgccccggca agcgatcagc gcccgtaacg gtccgcgatc atcagggcga tgctgccgcc
     2281 cagcggcgtc agaagcagcg acgcggcgaa ccagacgccg ggacggcgcc ggtccagctt
     2341 ggcccaatag gcgacgccca tcgccgccag cacatacagg aatatgaaca tgctacttcc
     2401 gcgcgtgttt gatcaggtca tccaccacgg atggatcggc cagggtcgag atatcgccca
     2461 ggcttgaggt gtcgccttcc gcgatcttgc gcaggatgcg gcgcatgatc ttgcccgagc
     2521 gggtcttggg caggccgggg gcgaactgga tgacgtcggg ccgagcaatg gggccgatct
     2581 catggccgac aaatttcttg agttcgtcgt tcagcgcgtc gctggcggcg acgccggcgt
     2641 tcagggtgac ataggcatag atgccttggc ccttgatgtc atggggatag cccaccaccg
     2701 cagcctcggc cacatcgcga tggccgacca gggcgctttc cacttcggcg gtgcccatgc
     2761 ggtggccgga gacgttgatc acatcgtcca ctcgcccggt gatccagtaa tagccgtctt
     2821 cgtcgcggcg gcagccgtcg ccggtgaaat atttgccgcg ataggctttg aagtaggtgt
     2881 ccacgaaacg ctggtgatcg ccatagacgc tgcgcatctg gcccggccag ctttgcgcga
     2941 tgcaaagatt gccgctggcg gcgccctcca gcaccttgcc gtccgcgtcc accagttccg
     3001 gcacgatgcc gggcagcggt cgggtggcag aacccggctt caggtcggtg gcgccgggca
     3061 ggggggtgat cagatggc
//
LOCUS       DATMDK010000209         3168 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1701300,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000209 DATMDK010000000
VERSION     DATMDK010000209.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3168)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3168)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3168
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1701300"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..287)
                     /locus_tag="VNN98_04070"
     CDS             complement(<1..287)
                     /locus_tag="VNN98_04070"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61300.1"
                     /translation="MSFTSPLDWYWVVAPLVVAGLAIFFLLHGLMHLAHGRLHHGGLH
                     LSGGTVLALAALCFGLIVLNTQSYARLTAERPVAEVTVAALHPALQLYRVTV"
     gene            complement(334..>3168)
                     /gene="mfd"
                     /locus_tag="VNN98_04075"
     CDS             complement(334..>3168)
                     /gene="mfd"
                     /locus_tag="VNN98_04075"
                     /inference="COORDINATES: protein motif:HMM:TIGR00580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003690 - double-stranded DNA binding
                     [Evidence IEA];
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription-repair coupling factor"
                     /protein_id="HWM61301.1"
                     /translation="PASEAPLNRDAVSRFRTGYVAAFGAAGDDPLYESVSAGRKTQGM
                     EHWLPLFYDHLDTLFDYLPRCLVLLGHQAEESKAARLELVRDYYETREQFRHAKDDKH
                     AVKGPPYKPLKPETLYLTDADWKAALARNIVRELSPFQAPESTNSVDAGGRQGRDFAP
                     ERQGGNLNVFQAAADHLKTQQAAGKRALVASWTEGSVERMGGVMSDHGVTPIRKVADW
                     PEALKLDASAFAITCLGIERGFEAPDFVILSEQDVLGDRMVRAQTRARRAQNFIAEAS
                     SLTPGDLVTHIEHGVGRYLGLKAIDALGAPHDCLELQYDGGKLFLPVENIELLTRYGS
                     DEGAQLDRLGGAGWQKRKAEMKERVRAIAAELIKIAAARQLKSLAPMEPPSGLYDEFS
                     ARFPYQETEDQERAIREVVADLAAGRPMDRLVCGDVGFGKTEVAMHAAFVAAMAGEQV
                     AVVVPTTLLARQHYRGFAERFAGFPLTVRQLSRFVDAKEAAETKAALAEGTVDIVVGT
                     HALLAESISFKRLGLVIVDEEQHFGVVHKERLKNLKADVHVLTLTATPIPRTLQLALS
                     GVRDLSLITTPPIDRLAVRTFVTPFDPLVVREALLREHYRGGQSFFVAPRIADLREIA
                     EFLKTVVPEVKPAVAHGQMSPKVLEEVMTAFYERKVDVLVSTNIVESGLDIPTANTLI
                     IQRADMFGLSQLYQLRGRIGRSKQRAYAYLTTPPDKKLTETATRRLEVLQSLDQLGAG
                     FSIASHDMDIRGAGNLLGEEQSGHVREVGIELYQEMLEEAVASMKEGGDADVTDQWSP
                     AINLGASVMIPEDYVADLNVRMSLYRRLAGIETRDDIDAFAAELIDRFGPLPDEVKHL
                     FEIVAIKQLAKAAGVEKIDAGPKGGTVAFRGNSFANPVALIKFINQHSGTMKVRPDQK
                     IVVSRDWPTPESRLSGAKALLTQLAKLAGS"
BASE COUNT          567 a         1051 c          988 g          562 t
ORIGIN      
        1 accgtgaccc ggtagagctg cagcgccgga tgcaacgccg ccaccgtcac ctccgccacc
       61 ggccgttcgg cggtgaggcg agcataactc tgggtgttga gcacgatcag gccgaagcac
      121 agcgccgcca gcgccagcac cgtcccgcca ctgagatgca aaccgccatg atgcagccgc
      181 ccatgcgcga gatgcatcag cccatgcaac aggaagaaaa tcgccagccc cgccaccacc
      241 agcggcgcta cgacccagta ccaatccaag ggagacgtga aggacataat agtcccatct
      301 gacaatatta gatggtaacg cgcaaactgc gccttacgat cccgccagct tcgccagttg
      361 ggtcagcagc gccttggcac cggagagccg gctttccggc gtgggccagt cgcggctgac
      421 cacgatcttc tggtcgggcc gcactttcat ggtgccgcta tgctggttga tgaacttgat
      481 cagcgccacc ggattggcga aggaattgcc gcggaaggcc accgtgccgc ccttgggccc
      541 ggcatcgatc ttctccaccc cggccgcctt ggccagctgc ttgatggcga cgatctcgaa
      601 caaatgcttg acctcgtccg gcagcggtcc gaagcggtcg atcagttcgg cggcaaaggc
      661 gtcgatatcg tcacgggtct cgatccccgc caggcggcga tagagcgaca tgcggacatt
      721 gaggtcggcg acataatctt ccgggatcat caccgaagcg cccagattga tggcgggcga
      781 ccactggtcg gtaacatccg cgtcgccgcc ttccttcatg ctggccaccg cttcttccag
      841 catctcctga tacagttcga tgccgacttc gcggacatgg ccggactgtt cctcgcccaa
      901 cagattgccg gcgccgcgaa tgtccatgtc gtggctggcg atggaaaagc ccgcgcccag
      961 ttgatccagc gactgcagca cttccagccg ccgtgtggcg gtctcggtta gctttttgtc
     1021 cggcggggtg gtgagatagg cataggcgcg ctgcttggag cggccgatgc ggccgcgcag
     1081 ctggtacaat tgcgacaggc cgaacatgtc ggcgcgctgg atgatcaagg tgttggcggt
     1141 ggggatatcc agcccggatt ccacgatatt ggtggagacc agcacgtcca ctttgcgttc
     1201 gtaaaaggcg gtcatcacct cttccagcac cttgggcgac atctggccgt gggcgacagc
     1261 cggcttgacc tccggcacca ccgtcttcag gaattccgcg atctcgcgca ggtcggcaat
     1321 gcgcggcgcc acgaagaagc tctggccgcc gcgataatgt tcgcgcagca aggcttcgcg
     1381 caccaccagc ggatcgaagg gcgtgacgaa agtgcgcacc gccagccggt cgatcggcgg
     1441 ggtggtgatc agcgaaaggt cgcgcacgcc ggacagcgcc agttgcaggg tgcgcggaat
     1501 cggcgtggcg gtcagggtca ggacatggac atcggctttc agattcttca accgctcctt
     1561 atgcaccacg ccgaaatgct gctcctcgtc cacgatcacc agccccagcc gcttgaagct
     1621 gatgctctcg gccagcaggg catgggtgcc gacaacaatg tccaccgtgc cttcggccag
     1681 cgccgccttg gtctccgccg cttctttcgc gtccacgaaa cgtgacagtt gccgcacggt
     1741 caggggaaag ccggcaaagc gttcggcaaa gccgcgataa tgctggcgcg ccagcaaggt
     1801 ggtgggtacc accaccgcca cctgctcgcc cgccatggcg gcgacaaagg cggcatgcat
     1861 cgccacttcg gttttgccga agccaacatc gccgcacacc agccggtcca tcggacggcc
     1921 cgccgccagg tcggccacca cttcgcgaat cgcgcgttcc tggtcctcgg tctcctgata
     1981 gggaaagcgc gcggaaaatt cgtcgtacag cccgctgggt ggttccatcg gggctaagga
     2041 tttgagctgg cgggcggcgg cgatcttgat cagctcggcg gcgatggcgc gcacccgctc
     2101 cttcatctcg gccttgcgct tctgccagcc cgcgccgccc aggcggtcga gctgggcgcc
     2161 ctcgtccgag ccgtagcggg tcagcagttc gatattctcg accggaagga acagcttgcc
     2221 gccgtcatat tgcagctcca ggcagtcatg cggcgcaccc agggcgtcga tcgccttgag
     2281 gcccagatac cgccccacgc catgctcgat atgggtgacc agatcgcccg gagtcagcga
     2341 cgaagcttca gcaataaagt tctgcgctcg ccgcgcccgc gtctgagccc gcaccatgcg
     2401 atcgcccagc acgtcttgtt cggacagaat gacgaaatcc ggcgcctcga aaccgcgctc
     2461 aatccccagg caagtaatgg caaacgcgct ggcatccagc ttcagcgctt cgggccaatc
     2521 ggcgaccttg cggatgggcg tgacgccgtg atcggacatc acaccgccca tgcgctccac
     2581 cgaaccctcc gtccaactgg ccaccagcgc ccgtttgccc gccgcctgct gcgttttgag
     2641 gtggtcggcc gccgcttgaa atacgttcag attgccgccc tggcgttccg gcgcgaagtc
     2701 gcggccctgg cggccgccgg catcaacact gttggtggat tccggtgcct ggaacggcga
     2761 cagttcgcgc acgatgttgc gcgccagcgc cgccttccag tccgcatcgg taagatatag
     2821 cgtctcgggc ttcagcggtt tgtagggcgg tcctttgacg gcgtgcttgt cgtccttggc
     2881 gtggcggaac tgttcgcggg tctcgtaata gtcccgcacc agttccaggc gcgcggcctt
     2941 ggactcttcg gcctggtggc ccagcagcac caggcagcgc ggcagatagt cgaacaaggt
     3001 atcgagatgg tcgtagaaca acggcagcca gtgctccatg ccctgggtct tgcggccggc
     3061 gctgacggat tcatacagtg gatcgtcgcc cgccgcgcca aacgccgcga catagccggt
     3121 gcggaagcgg ctgacggcgt cccggttcaa cggcgcttcg ctggcggg
//
LOCUS       DATMDK010000210         2253 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_3303801,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000210 DATMDK010000000
VERSION     DATMDK010000210.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2253)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2253)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2253
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3303801"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            54..959
                     /locus_tag="VNN98_04080"
     CDS             54..959
                     /locus_tag="VNN98_04080"
                     /inference="COORDINATES: protein motif:HMM:TIGR01297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008324 - monoatomic cation transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0006812 - monoatomic cation transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation diffusion facilitator family transporter"
                     /protein_id="HWM61302.1"
                     /translation="MNKTLEQAGGLMRRAAIASVSVSLFLVAIKTFAYFTSHSVAMLA
                     SLADSALDLFTSSLNLVAIRSALTPADAEHRFGHGKAEPLAGLAQGAFICASALFLVI
                     QAVNRILAPEPIDHSIEALIVMCIAIACAIGLILYQRKVVAKTGSLAVEADQTHYLGD
                     LAVNIGVVLALLLSSGLGWTLADPLIAIAVAGIMLFTALGVGRESFHQLMDRELPDAE
                     RARICRIAQSHEAVKNVHDLKTRTAGLSTFIQLHLGLDPKMSLAEAHVISDAVEAALL
                     KAYPGAEVIIHQDPAGLEPPHDLAN"
     gene            complement(956..2173)
                     /locus_tag="VNN98_04085"
     CDS             complement(956..2173)
                     /locus_tag="VNN98_04085"
                     /inference="COORDINATES: protein motif:HMM:NF013188.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006812 - monoatomic cation transport
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA];
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation:proton antiporter"
                     /protein_id="HWM61303.1"
                     /translation="MHQSLSALALLLAAAVGCGLVMNRLRMPAAAGFILVGMALGPSG
                     AGLIQTSGSIETLAELGVLMLLFIIGMEMRLAAFAKSLPLALGVTAMTCAVIPISVAL
                     FTYAVHGEVLGGVVIGFMLSISSTAVAMKMIEDSEEKDTPAGRLSLAILVAQDLAVVP
                     LLLITNTLGGALTAKALMGVGTRLALAFALLAAFIHVLNKIKSFRFPASEYLLKNFDV
                     GTLGVLGICFASAAASGLMGLSPALGAFLGGLAVGHSTLRRGAVAMAQPVQSILLFVF
                     FLSVGLLIDLNYLIQQVWVIAAALVVVTGGKTVLNFILLILAGKNFDTAFAASLFLSP
                     VGEFSFVIAGAGLTAGALSPAGHKLAIAVIAMSLLASPIFFLLARLAHRLAMKHLGRI
                     TPITPLPSAGEGI"
BASE COUNT          443 a          729 c          708 g          373 t
ORIGIN      
        1 gtctatcgcc gcgacaatgc cgcagcgcct tggcgcaccg aaagactgtt tccgtgaata
       61 agacattgga gcaggcgggc ggcttgatgc ggcgtgccgc tattgcctcg gtatcggtgt
      121 cgctgttcct ggtggcgatc aagaccttcg cctatttcac ctcccattcg gtggcgatgc
      181 tggccagcct cgcggactcc gcgctggatc ttttcacctc gtcgctcaat ctggtcgcca
      241 ttcggtcggc gctgaccccg gccgacgccg aacaccgctt cggccatggc aaggccgagc
      301 cgctggcggg gctggcgcag ggcgccttca tctgcgcttc ggcgctgttc ctggtgatcc
      361 aggcggtgaa ccgcatcctg gcgcccgaac cgatcgatca cagcatcgag gcgctgatcg
      421 tgatgtgcat cgccatcgcc tgcgccattg ggctgatcct gtatcagcgc aaggtggtgg
      481 ccaaaaccgg ctcgctggcg gtggaagccg accagacgca ttatctgggc gatctggccg
      541 tcaatatcgg cgtggtgctg gcgctgctgc tgtccagcgg gctgggctgg accctggccg
      601 atccgttgat cgccatcgcc gtggcgggga tcatgctgtt caccgccctg ggcgtgggac
      661 gggagagttt tcatcagctg atggaccgcg aactgcccga tgccgagcgc gcccgcatct
      721 gccgcatcgc gcaaagccac gaagcggtga agaatgtgca tgacctcaag acccgtaccg
      781 ccgggctgtc cacctttatt caattgcatc tggggctcga tcccaaaatg tccctggccg
      841 aggcccatgt catcagcgac gcggtggagg cggctttgct taaagcctat cccggcgcgg
      901 aagtgatcat tcatcaggat ccggcagggc tggagccgcc gcacgatctt gcaaattaaa
      961 taccctcgcc ggccgagggc agtggggtta tcggcgtaat gcgccccaga tgcttcatcg
     1021 ccagccgatg ggcgaggcgg gcaagcagga agaagatcgg gctggccagc agcgacatgg
     1081 cgattaccgc gatggcgagc ttgtgaccgg cagggctcag cgcgcccgcc gtcagacctg
     1141 cgcctgcgat gacgaaggaa aattctccca ccggcgacag gaacaaggag gcggcgaagg
     1201 cggtgtcgaa attcttgccc gccaggatga gcaggatgaa gttcagcacc gtcttgccgc
     1261 ccgtcaccac caccagggcg gcggcgatca cccagacctg ctggatcaga tagttcaggt
     1321 cgatcaacag ccccaccgac agaaagaaga cgaacagcag gatgctttgc accggctgcg
     1381 ccatcgccac cgcgccgcgg cgcaaagtgg aatggcccac cgccagcccg cccaggaagg
     1441 cgcctaaggc cggcgacaag cccatcaagc cgctggcggc ggcgctggca aagcagatgc
     1501 ccaacacgcc caaggtgccg acgtcgaaat tcttcaaaag atattccgat gcgggaaagc
     1561 gaaaactctt gatcttgttc agcacatgga tgaaggccgc cagcagcgcg aaggccagcg
     1621 ccagcctggt gcccaccccc atcagcgcct tggcggtcag cgcgccaccc aaagtgttgg
     1681 tgatcagcag cagcggcacc accgccagat cctgggccac caggatcgcc aatgacagtc
     1741 gcccggcggg ggtgtccttc tcctcgctgt cctcgatcat cttcatcgcc acggcagtgg
     1801 aggagattga cagcatgaaa ccgatcacca ccccgcccag cacttcgcca tgcaccgcat
     1861 aggtgaacag cgccaccgaa atggggatca cggcgcaggt catagcggtg acgcccagcg
     1921 ccagcggcag cgacttggcg aaggccgcca gccgcatctc catgccgata atgaacagca
     1981 gcatcagcac ccccagctct gccagggttt cgatgctgcc cgaggtctgg atcagtcccg
     2041 cgccgctggg ccccagcgcc atgccgacca ggatgaagcc cgcggcggca ggcatcctca
     2101 gccggttcat caccagaccg cagcccaccg cggcggccag aagcagggcg agggcggaaa
     2161 gggactggtg catgaccttg tttctatggg ggagggactg gactcgccag ccatatcggc
     2221 gatgaaaagc gtatcctgat cctcaatagg ggg
//
LOCUS       DATMDK010000211         2380 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2834841,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000211 DATMDK010000000
VERSION     DATMDK010000211.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2380)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2380)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2380
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2834841"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..504)
                     /locus_tag="VNN98_04090"
     CDS             complement(<1..504)
                     /locus_tag="VNN98_04090"
                     /EC_number="4.2.1.9"
                     /inference="COORDINATES: protein motif:HMM:NF013113.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0016836 - hydro-lyase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxy-acid dehydratase"
                     /protein_id="HWM61304.1"
                     /translation="MSKTGIANGLTNYGDRDFSLYLRRSFARSMGISEALLAGPIVGI
                     AATESGFNNCHRNMPELVEAVSRGVLAAGGLPRVFPTISLGEVFLNPTSMMFRNLMAM
                     DTEEMIRAQPMDAVVLIGGCDKTVPAQLMGAVSANIPAVQLVTGPMSTGRHRGERLGA
                     CTDCRRFW"
     gene            complement(501..1793)
                     /locus_tag="VNN98_04095"
     CDS             complement(501..1793)
                     /locus_tag="VNN98_04095"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HWM61305.1"
                     /translation="MATELERTTIRIVTRRLIPLLLLAYLAAYIDRINIGFAGAALKH
                     DFAFSNTVFGFGAGLFFVGYFLFEVPSNLLLAKFGARRWIARIMVSWGLLSAAMVFVQ
                     GPYSFYLIRFLLGIAEAGFFPGVIYYIVCWFPGAYRARLMALFTAGIPLSTVIGAPIS
                     GQLLKMSGIAGLPGWQWMFLLEGLPAVAIGMLVFFALPDRPGDAKFLSPAQKQWLETT
                     LAAEPGRYVAPQFLSTLKCFYDLRVVALCLIYFANISANLSLAFFLPQIIASTGANLT
                     QTSLLTAIPSAVGVLGLFAIGWLSDRFSNHRGFLLASLLITGAGLFAAAQFGAGGASV
                     IGIGAIAFASIGIHGLKAPFWSLVPMTLAGPVAAGGIAWINSVGNLGGWFGPSILGWL
                     TDTFGTYRAGMYALAGVQLAVALLAAFILQPQAGKRRT"
     gene            1894..>2380
                     /locus_tag="VNN98_04100"
     CDS             1894..>2380
                     /locus_tag="VNN98_04100"
                     /inference="COORDINATES: protein motif:HMM:NF018178.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="family 16 glycoside hydrolase"
                     /protein_id="HWM61306.1"
                     /translation="MKNVFLMGLSVAASFAFAAPALTQDSGVNPAELKQIMAQHPDWA
                     VWLADPALAKLTLDGPKMPNSNWRADDIRRPQPPFVETGKACAAPPPGDADILFDGHD
                     LSKWTGDHFGEWSVKDGILTTGAHIYNFLHTKDSYGDAQIHVEFREPAQPHPPVNPQY
                     HG"
BASE COUNT          532 a          756 c          714 g          378 t
ORIGIN      
        1 ccagaagcgc cggcagtcgg tgcaggcgcc cagccgctcg ccccggtggc ggccggtgga
       61 catggggccg gtgaccagct gcaccgcggg aatgttcgct gagacggcgc ccatcaattg
      121 cgccggaacc gtcttgtcgc accccccgat cagcaccacc gcatccatgg gctgggcgcg
      181 gatcatttcc tcggtatcca tcgccatcag gttgcggaac atcatgctgg tgggattgag
      241 aaagacttcg cccagcgaaa tggtgggaaa tacgcgcggc aagccgcccg ccgccagcac
      301 cccgcgcgaa accgcctcaa ccagttcggg catattgcga tgacaattgt tgaatcctga
      361 ttccgtggcg gcgatgccga cgatcggccc cgccagcagc gcttcggaaa tgcccatcga
      421 gcgcgcgaaa gaccggcgca ggtataggga aaagtcccgg tcgccatagt tggtgagacc
      481 gttcgcgatc cccgtcttgc tcatgtcctg cgctttccgg cctgcggctg caaaataaat
      541 gcggccagca gcgccaccgc aagctgaacc ccggccaggg cgtacatccc cgctctatag
      601 gttccgaatg tatctgtcag ccaacccaga atggaaggcc cgaaccagcc gcccagattg
      661 ccgacggaat tgatccaggc gatgccaccc gccgccaccg gaccggccag ggtcatgggc
      721 accagagacc agaaaggcgc cttcaacccg tgaatgccga tgctggcgaa ggcgatggcg
      781 cctatcccga tgaccgaggc gccgccggca ccgaactgcg ccgccgcaaa caatcccgcg
      841 ccggtgatca gcagcgaggc cagcagaaaa ccgcgatgat tggaaaatcg gtcggacagc
      901 cagccgatcg caaacaggcc gagaacgccc accgcggagg gtatggccgt caacaggctg
      961 gtctgggtca agttcgcgcc tgtgctggca atgatctggg gcaggaagaa tgccagggac
     1021 aggttggcgg agatattggc gaaatagatc aggcacagcg cgaccacgcg caggtcgtaa
     1081 aaacatttca gcgtgctgag aaactgcggc gccacatagc ggcccggctc ggccgccagc
     1141 gtggtttcca gccactgctt ctgcgccggc gacaggaatt tggcatcgcc cggccgatca
     1201 ggaagcgcga agaacaccag catgccgatc gccaccgccg gcaagccttc cagcaggaac
     1261 atccattgcc agcccggcag gcccgcgatg ccggacattt tcagcaactg gccggagatc
     1321 ggcgccccga tcacggtgga cagcggaatc ccggcggtga acagcgccat caaccgggcg
     1381 cgataagcgc cgggaaacca gcatacaatg taatagatca cgcccggaaa aaatcccgct
     1441 tcggcaatgc cgagaagaaa gcggatcagg tagaaactgt aaggtccctg cacgaagacc
     1501 atggcagccg acagcaggcc ccaactcacc atgatccgcg caatccagcg gcgggccccg
     1561 aatttggcca agagcagatt gctcggtact tcgaacagga aatagcccac gaaaaacaat
     1621 ccggcgccga aaccgaacac ggtattgctg aaggcaaaat catgtttcag cgccgcgcca
     1681 gcgaaaccga tattgatgcg gtcgatatag gcggcgagat aggccagcag cagcagggga
     1741 atcagccgcc gggtcacgat gcgaatggtc gtgcgttcca gctcggtggc catgacattt
     1801 ccctctccag gcggcttatt tatcggccag cgagcccgct atccgtgcgc ctttaaacta
     1861 cgctatcatg tttcgcgcgt ttgggagggt agcatgaaaa acgtgtttct gatggggttg
     1921 agcgtcgccg cgagctttgc atttgcagcg ccggccttga cgcaggattc gggggtcaac
     1981 ccggccgagc tcaagcagat catggcacag catcccgatt gggcggtgtg gctggcagat
     2041 cccgccctgg caaagctgac cttggacggc cctaagatgc ccaattccaa ctggcgcgcc
     2101 gacgatatcc gccggcccca acccccgttt gtggaaaccg gcaaggcctg cgccgcgccg
     2161 ccgcccggcg atgccgatat attgtttgac ggccacgacc tgtccaaatg gaccggcgat
     2221 catttcggtg aatggagcgt gaaggacggt atcctgacga ccggcgccca tatctacaat
     2281 ttcctgcaca ccaaggattc ctatggtgac gcgcagattc atgtcgaatt ccgcgaaccc
     2341 gcacagcccc atccgccggt caatccgcaa tatcacggca
//
LOCUS       DATMDK010000212         2304 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_341037,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000212 DATMDK010000000
VERSION     DATMDK010000212.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2304)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2304)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2304
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_341037"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..325)
                     /locus_tag="VNN98_04105"
     CDS             complement(<1..325)
                     /locus_tag="VNN98_04105"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61307.1"
                     /translation="MNKKNLADLVIRQSEFKGEMGVARADITPPGNIYARSWGSALHD
                     AAEGIHRPLVTTCLFFRGGDPQLELYLLCFDLGWWYDNAHELEIRKAILEKSGIRDDQ
                     LVTHMG"
     gene            complement(338..2080)
                     /locus_tag="VNN98_04110"
     CDS             complement(338..2080)
                     /locus_tag="VNN98_04110"
                     /inference="COORDINATES: protein motif:HMM:TIGR00813.1"
                     /note="Members of the Solute:Sodium Symporter (SSS), TC
                     2.A.21 as described in tcdb.org, catalyze solute:Na+
                     symport. Known solutes for members of the family include
                     sugars, amino acids, nucleosides, inositols, vitamins,
                     urea or anions, depending on the system; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015370 - solute:sodium symporter activity
                     [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sodium/solute symporter"
                     /protein_id="HWM61308.1"
                     /translation="MGANSTLAMLPLDYVEFFVFLAALCAVGFVSGRGERSNSNDYFL
                     AGRRLPWYAVGGSYIAANVSTEHFIGLVGASYIMGVVPALGQWTTTLAEVVIVFLFVP
                     FLIRAHVVTVPQYLAARFGPGVRLAFALLTIFANVTIFMAAVMYASGLALSGFFGWPL
                     LWCIIGTGIFAGGFAIYGGLNTVAWTGVFTAIVKIGGVTLLTILALKAMTPSGGIVDG
                     FVYVIRKNIADKGIWHKALTVSSSHLTQYGAYNRLTVFQPPDHPLMPWTGSFLGFLSV
                     GVWYGVMNQFIVQRVLGARDIWHARMGMVMAGYAKLFLPLIIVLPGLILFARHPEFML
                     GDWTGANHRADGGFVVLVREFFPAGLRGLLLAVLICAVQATVSSVVNATAAILTLDIY
                     VPLIHPGASEKQKVRFGIWASLAAIIAGIAMAIAISRMDSGIYQYMQTINALVAPPFA
                     AILWVGLLWKRTNGAGGVAAIIAGFTTGLSLKLIGYFWAMPSWFYPFNNQAPVCLLVS
                     VLACILATLAYPGRTPGTQENPVTFWNSGETLRAGLGGHWYSSVVLWAGLSLLLTLAA
                     MVIFSQLFFPTSPL"
BASE COUNT          533 a          716 c          695 g          360 t
ORIGIN      
        1 ggcccatatg ggtgaccagc tggtcgtcgc ggatgccgga cttttccagg atggccttgc
       61 ggatctccag ctcatgggca ttgtcgtacc accagcccag atcgaagcag agcaggtaca
      121 gttccagctg cggatcgccg ccgcgaaaga aaagacaggt cgtcaccaat gggcgatgga
      181 tgccttccgc cgcgtcatgc aaggcgctgc cccaggagcg ggcatagata ttgcccggcg
      241 gggtgatatc ggcccgcgcc acgcccattt cgcctttgaa ctccgattgc cgaatcacca
      301 gatcggcaag atttttcttg ttcattgctg gtctcaccta aagtgggctc gtcgggaaga
      361 agagttgaga gaatatcacc atggcggcca gggtcagcag caatgacagg cccgcccata
      421 aaacgacgct gctgtaccaa tgcccgccca gcccggcccg caaggtttcg ccggaattcc
      481 agaaggtgac cgggttctcc tgggtccccg gggtgcggcc gggatacgcc aaagtggcca
      541 ggatacaggc caggacagac accagcaggc acacaggcgc ctggttgttg aagggataaa
      601 accagctcgg catggcccag aaatagccga tcagcttcag gctgaggccg gtggtaaaac
      661 ccgcgatgat ggcggcgaca ccgccggcgc cattggtgcg cttccacaag aggcccaccc
      721 acaggatggc agcgaaaggc ggcgccacca gcgcattgat ggtctgcata tattgataaa
      781 tgcccgaatc catccggctg atggcgatgg ccatggcgat gccggcgatg atggccgcca
      841 gcgaagccca gatgccgaag cgcaccttct gcttttcgct ggcgcccgga tggatcagcg
      901 gtacatagat gtccagcgtg aggatggcag cggtggcgtt gaccaccgag ctgacggtgg
      961 cttgcacggc acagatcagc accgccagca gcaacccacg caacccggcg ggaaagaatt
     1021 cccgcaccag cacgacaaag ccgccatcgg cgcggtggtt ggcgccagtc cagtcgccca
     1081 gcatgaattc gggatgccgg gcaaacagga tcaggccggg cagcacgatg atcagcggca
     1141 aaaacaattt ggcataaccc gccatcacca tgcccatgcg ggcatgccag atatcgcgcg
     1201 cacccagcac gcgctggacg atgaactggt tcattacccc gtaccacacg cctaccgaca
     1261 ggaaaccaag aaaggacccg gtccagggca tcagcggatg gtccggcggc tgaaacaccg
     1321 taagccggtt ataggcgcca tattgggtca gatgtgagct ggagaccgtg agcgccttgt
     1381 gccagatacc tttgtcggcg atgttcttcc ggatgacata gacaaaacca tcgactattc
     1441 cgcccgatgg cgtcatcgcc ttgagcgcca ggatcgtcaa caaggttacg ccaccgatct
     1501 tcacgatcgc cgtaaagact cccgtccagg ccacggtgtt aaggccgccg taaatcgcaa
     1561 agccgcccgc aaaaatgccg gtcccgatga tgcaccacaa taacggccag ccgaaaaagc
     1621 ctgatagcgc caagccgctg gcatacatca ctgccgccat gaaaatggtg acattggcaa
     1681 agatggtcag cagggcgaaa gccagccgca ccccagggcc gaaacgcgcc gccagatatt
     1741 gcggcacggt gacgacatgg gcccggatca ggaagggcac gaacaggaag acgatgacga
     1801 cttccgccaa ggtggtcgtc cactggccta gcgccgggac cacgcccatg atgtagctgg
     1861 caccgaccag gccgatgaaa tgctcggtgg agacattggc ggcgatatag gaaccgccca
     1921 ccgcgtacca gggcagccgc cgcccggcca ggaaatagtc gttggaattg gagcgttcgc
     1981 cccgccccga aacgaagccc accgcgcaca gcgccgccag aaagacgaaa aactcgacat
     2041 aatcgagcgg cagcatcgcc aatgtggaat tcgcgcccac taacccccgg cgggcgcttt
     2101 ttctgccgcc ccttttgcgg ctagtctaaa cggcacccaa agcccgcgtc accaaccata
     2161 tgaccgaact gccgaaaatc caccgcgagg accgggccct tatccgcctg ctgggccggt
     2221 tattgggcga ggtgatccgc gagcagcatg ggacggaggc cttccagctg gtggaggata
     2281 tccgccgcca ggcggtgggc gagt
//
LOCUS       DATMDK010000213         3163 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2383307,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000213 DATMDK010000000
VERSION     DATMDK010000213.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3163)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3163)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3163
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2383307"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1203
                     /gene="lpxB"
                     /locus_tag="VNN98_04115"
     CDS             <1..1203
                     /gene="lpxB"
                     /locus_tag="VNN98_04115"
                     /EC_number="2.4.1.182"
                     /inference="COORDINATES: protein motif:HMM:TIGR00215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008915 - lipid-A-disaccharide synthase
                     activity [Evidence IEA];
                     GO_process: GO:0009245 - lipid A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipid-A-disaccharide synthase"
                     /protein_id="HWM61309.1"
                     /translation="HHRHQAVKTRADAQLKKITLMLVCGEPSGDALGAQLMAGLKSIA
                     GDRVRFTGVGGLAMAREGLQSLYPLDTTAVMGLREVVPAIPAILRHVRQAVDFAVKTK
                     PDAVVVIDSPDFTHRVARAIKKRDPSIRTVDYVAPQVWASRAYRAKAMASYFDLVLAL
                     FPFEVAFFEKYGLKAAFVGHPVIERAAKMMGGAALRIRLGIDAEAPLLALLPGSRTSE
                     IRFILPAFRDAVNILARKMPGLVTVLPTVPHVADKVRAATADWPTPLHIVEGEADKYA
                     AFDAADTALAASGTVTAELALSRTPMVVAYKVGGLTYFLSKFLMTVKYITLINILLQR
                     QAVPEYLQARATPQRLAGAVERLFRYDVARTAQIEAMNEFAIALGEGGEPPSLRAARV
                     LLEFVDKP"
     gene            complement(1250..2560)
                     /locus_tag="VNN98_04120"
     CDS             complement(1250..2560)
                     /locus_tag="VNN98_04120"
                     /EC_number="2.3.3.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017979157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046912 - acyltransferase activity, acyl
                     groups converted into alkyl on transfer [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="citrate synthase"
                     /protein_id="HWM61310.1"
                     /translation="MRESKIKPEGKAKLTYEGKDYEFQVYSGTQGPNAVDIRKLYEQV
                     DIFTYDPGFTSTASTESNITFIDGDKGVLQYRGYSIGDLADHSTFLESCYLLLYGELP
                     NQSQMEKFSFAITHHTMVHEQLASFFSGFRRDAHPMAIMCGVVGALSAFYHDSTDIND
                     PKQREVASHRLIAKLPTIAAMAFKYHVGQPFVYPLNKLGYTENFLRMCFSVPAEDYVV
                     NPVLAKALDTIFILHADHEQNASTSTVRLAGSSGANPFACIAAGIACLWGPAHGGANE
                     AALKMLEEIGTADRIPEFVARAKDKNSGFRLMGFGHRVYKNYDPRAKAMQIQAHAVLD
                     ELGLHDDPLLKVAMELEKVALSDPYFIEKKLYPNIDFYSGITLKALGFPTSMFTVLFA
                     LARTVGWIAQWKEMLEDPHQKIGRPRQVYTGPTAREYVPMAKRT"
     gene            complement(2656..>3163)
                     /locus_tag="VNN98_04125"
     CDS             complement(2656..>3163)
                     /locus_tag="VNN98_04125"
                     /inference="COORDINATES: protein motif:HMM:NF039902.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61311.1"
                     /translation="ARMDYKKLDNLNGHYIRETADATLVAEVTAFLAREPRILSMTAR
                     GRLQAAMPVLKERAKTLVELIQGAEFLFTDGPRTLDEAAAKLLISEGRATLAAVLPAL
                     EATNWTASELEAAARAYADQNGLKLGQAAQPLRAALTGKASSPPLFEMLALLGREESL
                     IRLRAYTA"
BASE COUNT          559 a          938 c         1042 g          624 t
ORIGIN      
        1 catcaccggc atcaagccgt gaagacccgc gcggacgcgc aattaaaaaa aatcacgttg
       61 atgctggtgt gcggcgagcc gtcgggcgac gcgctgggtg cgcagctgat ggcaggtctc
      121 aaaagcatcg ccggagaccg cgtgcgcttc acgggtgtgg gcgggctggc gatggcgcgc
      181 gaaggtttgc aaagcctcta tccgctggat accacggcgg tgatgggctt gcgcgaagtg
      241 gtgcctgcca ttcccgccat cctgcgtcat gtccgccagg cggtggattt cgcggtaaag
      301 accaaacccg atgcggtggt ggtgatcgac agccccgatt tcacccatcg ggtggcgcgc
      361 gccatcaaga agcgcgatcc ttcgatccgc acggtggact acgtcgcgcc ccaagtctgg
      421 gcatcgcgcg cctatcgcgc caaggccatg gccagctatt tcgatctggt gctggcgctg
      481 tttcccttcg aggtggcgtt cttcgagaaa tacggtctga aagccgcctt cgtcggccat
      541 ccggtgatcg agcgggccgc caagatgatg ggcggcgcgg cgttgcgcat ccggctgggc
      601 atcgacgccg aggcgccgtt gctggcgctg ctgcccggca gccgcaccag cgaaatccgc
      661 tttatcctgc cggcgttccg cgacgcggtg aacatcctcg cccgcaaaat gcccggcctg
      721 gtgacggtgc tgcccaccgt gccgcatgtt gcggacaagg tgcgcgccgc taccgccgat
      781 tggccgacgc cattgcacat cgtggaaggc gaagcggaca aatacgctgc cttcgacgcc
      841 gccgacaccg ccctggcggc ctcgggcacg gtgaccgccg aactggcgct gtcgcgcacc
      901 ccgatggtgg tggcgtacaa ggtcggcggg ctcacttact ttttgtccaa attcctgatg
      961 acggtgaaat acatcaccct gatcaacatc ctgctgcagc gccaggcggt gccggaatat
     1021 ctgcaagccc gcgccacgcc gcagaggctg gccggcgcgg tggagcggct gtttcgctat
     1081 gatgtggcgc gcaccgccca gatcgaagct atgaacgaat tcgccatcgc cctgggcgaa
     1141 ggcggcgaac caccctcgct gcgcgcggcg cgtgtattgt tggagtttgt cgacaaaccc
     1201 tgaatgtcat ggcccgcgaa tgcgggccat gacaattgag gcgtgacggt tacgtccgct
     1261 tcgccatcgg cacatattcg cgcgcggtcg ggccggtata gacctggcgc gggcggccga
     1321 ttttctggtg cgggtcttcc agcatttcct tccactgcgc gatccagccc acggtgcggg
     1381 ccaaagcgaa tagaacggtg aacatggagg tggggaagcc cagcgccttc agcgtgatac
     1441 cggaatagaa gtcgatattg ggatagagct tcttttcgat gaaataggga tcgctgagcg
     1501 ccactttttc cagttccatc gccactttca gcagcggatc gtcgtgcagg cccaactcgt
     1561 ccagcacggc atgggcctgg atctgcatcg ccttggcgcg gggatcgtaa ttcttgtaga
     1621 cgcggtggcc gaagcccatc aggcggaagc cgctattctt gtccttggcg cgggcgacga
     1681 attcgggaat gcggtccgcg gtgccgattt cttccagcat cttcagtgcc gcctcgttgg
     1741 cgccgccatg ggccgggccc cacaggcagg cgattcccgc cgcgatgcag gcgaaaggat
     1801 tggcgccgga ggaaccggcc agacgcacgg tcgaggtcga ggcgttctgc tcatgatcgg
     1861 catgcaggat gaagatggtg tccagcgcct tggccagcac cgggttcacc acatagtcct
     1921 cggccggaac cgagaaacac atgcgcagga agttttcggt atagcccagc ttgttcagcg
     1981 gatacacaaa gggctggccg acatggtact tgaacgccat ggccgcgatg gtgggcagct
     2041 tggcgatcag ccggtgactg gcgacttcgc gctgcttggg atcgttgatg tcggtgctat
     2101 cgtgatagaa ggccgacagg gccccgacca caccgcacat gatcgccatc gggtgtgcgt
     2161 cgcggcggaa gccggagaag aagctggcca gctgttcatg caccatggtg tggtgagtga
     2221 tggcgaagct gaatttctcc atctggcttt ggttgggtag ttcgccgtac agcagcagat
     2281 agcagctttc caggaaggtg gaatgatcgg ccaggtcgcc gatggaatag ccgcgatatt
     2341 gcagcacgcc cttgtcgcca tcgatgaagg tgatgttgga ttcggtcgag gcggtggagg
     2401 tgaagccggg atcgtaggtg aagatgtcca cctgctcgta gagcttgcgg atgtccaccg
     2461 cattggggcc ctgggtgccg ctatagacct ggaattcgta atccttgccc tcgtaggtca
     2521 gcttggcttt gccttcgggc ttaatcttgc tctcgcgcat ggtaaatccc ttttccccaa
     2581 ccgatcttgc gctgcaatat gaccggcttt tgacgagccg tcacctagct gtggatggaa
     2641 ccgcggacta tttcgtcagg cggtataagc ccttaatcgg ataagggatt cttcccggcc
     2701 gagcagtgcc aacatttcaa acagtggcgg cgagctggcc ttgcccgtca gcgcagcgcg
     2761 cagaggctgg gccgcctggc ccagtttcag gccgttctgg tcggcgtagg cgcgggcggc
     2821 ggcttccagt tccgaagccg tccagttggt ggcttccagc gcgggcaaga ctgcggccag
     2881 ggtggctcgg ccttccgaga tcagcagttt ggcggcggct tcatccaggg tgcgggggcc
     2941 gtcggtgaac agaaactccg ccccctggat cagttcgacc agggtcttgg cgcgttcctt
     3001 caagacgggc atggcggcct gcaggcggcc gcgcgccgtc atggaaagaa tgcgcggctc
     3061 gcgcgccaga aaggcggtga cttccgccac caaggtggcg tcggcggtct cgcggatgta
     3121 atggccgttg agattgtcca gcttcttgta atccatccgc gcc
//
LOCUS       DATMDK010000214         5450 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2147659,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000214 DATMDK010000000
VERSION     DATMDK010000214.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 5450)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5450)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5450
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2147659"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            103..1590
                     /gene="guaB"
                     /locus_tag="VNN98_04130"
     CDS             103..1590
                     /gene="guaB"
                     /locus_tag="VNN98_04130"
                     /EC_number="1.1.1.205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003295955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003938 - IMP dehydrogenase activity
                     [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IMP dehydrogenase"
                     /protein_id="HWM61312.1"
                     /translation="MTSPSIREALTFDDVLLVPGASEVLPGQVDTRTRLTKTVELGIP
                     LISAAMDTVTEAGLAIAMAQAGGMGVIHKNLGVEEQAEHVRRVKRYESGMVVNPVTIG
                     PNATLADALSLMERHRISGVPVVENVDTKGAGKLVGILTNRDVRFAADPRQKVAELMT
                     KDRLVTVREGVKSDEAKRLLHQHRIEKIIVVDDAYRCVGLITVKDIEKAQKYPNSCKD
                     ERGRLRVAAATGVGEDGYVRAMALIEAECDVIMVDTAHGHSKGVLDAIRRIKKASNYT
                     QVAGGNIATADAAKALIDAGADAVKVGIGPGSICTTRIVAGVGVPQLTAIMDAVSEAR
                     KASVPVIGDGGIKYSGDLAKALAAGADVAMVGSLLAGTEESPGDVFLYQGRSYKGYRG
                     MGSVGAMARGSADRYFQAEVQDVLKLVPEGVEGQVAYKGPVGGVVHQIIGGLRAAMGY
                     TGCRTIKEFHAKAQFVRITGAGLRESHVHDVTVTREAPNYHPGGQ"
     gene            1707..2615
                     /locus_tag="VNN98_04135"
     CDS             1707..2615
                     /locus_tag="VNN98_04135"
                     /inference="COORDINATES: protein motif:HMM:NF014066.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TraB/GumN family protein"
                     /protein_id="HWM61313.1"
                     /translation="MLCSPAQAQPTADWAQIEAVEVSARPGPAVWHLTRGNSEVWILG
                     TVGAMPKALDWNKAYLADLLDGARAILMPPKANIGLVDIGWFLIMHGGELSLPHGQML
                     ETSLPEALRGRFITARDAVSGDASDYRTDTPIRAAIRLQQDFMKKTSFSYREPRDTIE
                     DMAFRQHIRNSPVTRFEAMDAIREVLKLTPEQQQTCLAQAAEDVNWGLAHAGAASRAW
                     AVGDVRGVKANYVQSRLLDCVTGAVRSASDIDARTIADSVTAIDAALNQPGKTIAVIG
                     MGPLLRRGGVLERLQALHVTIESPAE"
     gene            complement(2616..3200)
                     /locus_tag="VNN98_04140"
     CDS             complement(2616..3200)
                     /locus_tag="VNN98_04140"
                     /inference="COORDINATES: protein motif:HMM:TIGR00052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX domain-containing protein"
                     /protein_id="HWM61314.1"
                     /translation="MANDDISSRVKLRALTVLSDNYYTLRKASFDFQRGDGAWQHQER
                     ESYDIGDAAAVLPFDAARGKLLLIKQFRWPVFEWGYKQLLVEVIAGKLDGDAPLDCIV
                     KEAMEEAGVTISNPRLITHCFVSPGAVKERVSLFLAEYDSTAARAKGGGHEAEGEDII
                     VLEMTLAEALSMVERGEIVDMKTILLLQAAKLAT"
     gene            complement(3210..4583)
                     /locus_tag="VNN98_04145"
     CDS             complement(3210..4583)
                     /locus_tag="VNN98_04145"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61315.1"
                     /translation="MPRALTFALLVALAAFALAAFSPALLNDGDTYWHIRAGEWMIAH
                     GAVLRADLFSATVAGAPWHTQEWLAEILMALSRRGGWLGVHLLFAACAALTAGVTALF
                     VRRRVDFVPALLAMVLGLACVTGSLLARPHILALPLLAIWTAGMVAAREKNAAPSWWL
                     ILVMPLWANLHGSFAFGLALAGALAVEAVIESADRKKAALGWGLFLLAAIVSAVITPF
                     GLQTLLFPLQLSAMLGLGHIGEWQASDFTQLSPFAIALLTALFVLGSGKLKIPAIRLL
                     ILLGLVWLALVHGRHQMLLGVTAPILLAASLARPWPAKQQNSPRSFAVLAALGFVALI
                     AARLAIPVARGDDPVSPVSALAHVPRFVRETPVLNDYSFGGYLIWNGVKPFIDSRADL
                     YGDIFLQNYADITAPDKDALAAALTFYHVRWTIFSARAPVVKLLDATPGWHRFYSDKL
                     AVVHVHD"
     gene            4704..>5450
                     /locus_tag="VNN98_04150"
     CDS             4704..>5450
                     /locus_tag="VNN98_04150"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61316.1"
                     /translation="MTPAARLQMAIEILEGLDKTAQPTDRFLKSWFRIRRFAGSKDRR
                     EIANRVFAVQRTRATLAHRMSNETSRALVIAALLETGEDIPALFTGGGYGPEPLSDAE
                     RAAIAATPALAPLWVRGEFPQFLESQLARAFGDRLLDEMVALQSRAPADLRVNTLKAK
                     REDVIAALNADGVLCAATPYAPHGIRIGSDATNLSKSALFESGAFEFQDEAAQIASAL
                     CGAQPGMRVLDLAAGAGGKSLAFAASMQNHG"
BASE COUNT         1031 a         1772 c         1769 g          878 t
ORIGIN      
        1 atccaggttt tacaaggatt taagaagcga tgttcccggc ctcttgcgaa aatcggaggg
       61 cgctggtaca ggctcggcgc tccatatgga gcgcgcccct ttatgaccag ccccagcatc
      121 cgcgaagccc tgaccttcga cgatgtcctg ctggtgcccg gcgcctccga agtccttccc
      181 ggccaggtcg atacccgcac ccgcctcacc aagacggtgg agttgggcat tccgctgatt
      241 tccgccgcca tggataccgt caccgaagcg ggcctggcca tcgccatggc ccaggccggc
      301 ggcatgggcg tgattcacaa gaatctgggc gtcgaggaac aggccgagca tgtccgccgg
      361 gtcaagcgtt acgaaagcgg catggtggtc aatccggtga ccatcggccc gaacgccacc
      421 ctggccgatg cgctgtcgct gatggagcgg caccgtattt ccggcgtgcc ggtggtggag
      481 aatgtcgaca ccaagggcgc aggcaagctg gtgggcatcc tcaccaaccg cgacgtgcgt
      541 ttcgccgccg atccgcgcca gaaggtcgcc gaactgatga ccaaggaccg gctggtcacg
      601 gtgcgcgaag gcgtcaaatc cgacgaagcc aagcggctgc tgcaccagca ccgtatcgaa
      661 aagatcatcg tggtggacga cgcttatcgc tgcgtcggcc tgattaccgt gaaagatatc
      721 gagaaggcgc agaaatatcc caatagctgc aaagacgagc gcggacgtct tcgtgtcgcc
      781 gcagcgacgg gcgttggtga agacggttat gtgcgggcga tggcgctgat cgaagcggaa
      841 tgcgacgtga tcatggtcga caccgcccat ggccattcca agggcgtgct ggacgccatt
      901 cgccgcatca agaaagcctc gaactatacc caggtggcgg gcggcaatat cgccacggcg
      961 gacgcggcca aggcgctgat cgatgccggc gccgacgcgg tgaaggtggg gatcggcccc
     1021 ggctcgatct gcaccacccg catcgtggcg ggcgtgggcg tgccgcagtt gaccgcgatc
     1081 atggatgcgg tgagcgaagc gcgcaaagcc agtgtgccgg tgatcggcga tggcggcatc
     1141 aaatattccg gcgatctggc caaggcgctg gccgccgggg cggatgtggc gatggtggga
     1201 tcgctgctgg cgggcaccga agagtcgccg ggcgacgtgt ttttgtatca gggccgctcc
     1261 tacaagggtt atcgcggcat gggcagcgtg ggcgccatgg cgcgcggcag cgccgaccgt
     1321 tacttccagg cggaagtgca ggacgtcttg aaactggtgc cggagggcgt cgaaggccag
     1381 gtcgcctata agggtccggt cggcggggtg gtgcaccaga tcatcggcgg cctgcgcgcc
     1441 gccatggggt acaccggctg ccgcaccatc aaggaattcc acgctaaggc gcagttcgtg
     1501 cgcatcaccg gcgcgggcct gcgcgagagt catgttcacg acgtgacagt tacccgcgaa
     1561 gcgccgaact atcaccccgg cggtcagtag tgagccgcgt cacgcggaac gcgtgtgagc
     1621 aggtccggtg gacctgcgaa agcggcgaac gccgcgagcc caagcgagcg gccgcgggcg
     1681 gcctgtggaa agccgctgcc ctgatcttgc tgtgcagtcc cgcgcaggcg cagcccaccg
     1741 ccgactgggc gcagatcgag gccgtcgaag tcagtgccag gcccggcccc gccgtctggc
     1801 accttacccg cggcaattcg gaagtctgga tcctgggaac ggtcggcgcc atgcccaagg
     1861 cgctggactg gaacaaggcc tatctcgccg acctgctgga tggggcacgc gccatcctga
     1921 tgccgcccaa ggccaatatc ggcctggtgg atatcggctg gttcctgatc atgcatggcg
     1981 gcgagctcag cctgccgcat gggcagatgt tggaaacgag cctgccggag gcgttgcgcg
     2041 gccgtttcat caccgcgcgc gatgctgtca gcggtgacgc aagcgactat cgcaccgaca
     2101 cgccgatccg cgccgcgatc cgcttgcagc aggacttcat gaagaagacc agcttctcct
     2161 accgcgaacc gcgcgacacg attgaggaca tggcgttccg ccagcacatc cgcaacagtc
     2221 cggtaactcg cttcgaggcc atggacgcca tccgcgaggt gctcaagctg acgccggagc
     2281 agcagcaaac ctgcctcgcg caggcggcgg aggatgtgaa ttggggcctg gcgcatgcgg
     2341 gtgccgcgtc gcgcgcctgg gcggtcgggg atgtgcgggg cgtgaaggcc aactatgtcc
     2401 agtcgcggct gctggactgc gtcaccggcg ccgtgcggtc cgccagcgac atcgacgcgc
     2461 gcaccatcgc cgattccgtt accgcgattg acgcggcgct gaaccagccg ggcaagacca
     2521 tcgcggtgat cggcatggga ccgttgctca gacggggtgg cgtgttggag cgcttgcaag
     2581 cgctccatgt caccatcgaa agtcctgccg agtaattatg tcgcgagctt agccgcctgt
     2641 agcagtagga tggtcttcat gtccacgatc tcgccgcgct ccaccatcga aagcgcttcg
     2701 gccaaggtca tttccaacac aatgatgtct tcgccttcgg cctcgtggcc gccgcctttg
     2761 gcgcgggcgg cggtggagtc gtactccgcc aggaacagcg acacccgctc cttcaccgcg
     2821 ccgggactga cgaagcagtg ggtgatcagg cgtgggttgg aaattgtgac gcccgcttcc
     2881 tccatcgctt ccttgacgat gcagtccagc ggcgcatcgc cgtccagctt gccggcgatg
     2941 acttccacca gcaattgctt atagccccat tcgaacaccg gccagcggaa ctgctttatc
     3001 agcagcagct tgccgcgcgc ggcatcgaag ggcagcaccg cggcggcgtc gccgatgtca
     3061 tagctttccc gctcctggtg ctgccacgct ccgtcgccgc gctggaagtc gaaactagcc
     3121 ttgcgcagcg tgtagtagtt gtccgacagg actgtcaggg cgcgtagctt gacgcgagag
     3181 gagatatcat cgtttgccat tgacaaacgc taatcgtgga cgtgcaccac cgcaagcttg
     3241 tcggaataga agcggtgcca gccgggtgtt gcgtccagca atttcaccac cggcgcccgc
     3301 gccgaaaaga tcgtccagcg cacgtgatag aaagtcaggg cggcggccag cgcatccttg
     3361 tcgggtgcgg tgatgtcggc ataattctgc aggaagatgt cgccatacag gtcggcgcgg
     3421 ctgtcgatga aaggcttgac gccgttccag atcagatagc cgccgaagct gtaatcgttc
     3481 aacaccggtg tctcgcgcac aaaacgcggc acatgcgcca gcgccgagac cggcgacacc
     3541 ggatcgtcac cgcgtgcgac gggaatcgcc agccgtgccg cgatcaatgc cacaaagcca
     3601 agcgcggcga gaaccgcgaa cgaccgcggg ctgttctgct gtttcgcggg ccaggggcgc
     3661 gccagcgagg cggcaagcag gatcggcgcc gtcaccccca gcagcatctg gtggcggcca
     3721 tgcaccaagg ccagccacac cagccccagc aggatcagca agcggatggc ggggattttc
     3781 aatttgccgc tgcccagcac gaacagcgcc gtcagcaggg cgatggcaaa tggcgagagt
     3841 tgcgtgaagt cgctggcctg ccattccccg atatgaccga gccccagcat cgccgacagc
     3901 tgcagcggaa acagcagggt ctgaaggcca aacggtgtga tcaccgccga gacgatggcg
     3961 gcaagcagga acaggcccca gcccagcgcc gcttttttgc gatcggcgga ttcgatcacc
     4021 gcttccacag ccagcgcgcc ggccagcgcc agcccgaaag cgaaactgcc atgcaggttg
     4081 gcccagagcg gcatcaccag gatcagccac caggacggtg cggcgttttt ctcgcgcgcc
     4141 gcgaccatgc ccgccgtcca gatcgccagc agcggcagcg ccagtatatg cggccgcgcc
     4201 agcaggctgc cggtgacaca ggccaggccc aataccatcg ccagcaatgc gggaacgaaa
     4261 tccactcgcc ggcgcacaaa caaggccgtc acacccgccg tcagcgccgc gcaggccgcg
     4321 aacagcagat gcacgcccag ccaaccgccg cgcctgctca gcgccatcag aatttctgcc
     4381 agccattcct gggtatgcca gggcgcgccc gccaccgtgg ccgagaaaag gtcggcccgc
     4441 agcactgcgc catgcgcgat catccattcc ccggcgcgga tgtgccaata ggtgtcgcca
     4501 tcattcagca gggcgggcga aaacgccgcc agcgcaaaag cggccagcgc aaccagcagg
     4561 gcaaaagtca gggcacgcgg cataggattg gctttcggat cggcgcacac tctataagag
     4621 caatcctcac tttaggttta aggcaagcga gggctgtttc ccgctcaacc aactgattgt
     4681 tctagataaa tgactggttc cctatgacac cggccgcccg gctgcaaatg gcgatcgaga
     4741 ttctggaggg gctggacaag accgcccagc ccaccgaccg cttcctcaaa agctggttcc
     4801 gtatccgccg ctttgccggg tcgaaggacc gccgcgagat cgccaatcgc gtcttcgccg
     4861 tgcagcggac ccgcgccacc ctggcgcacc gtatgagcaa tgagacttcg cgcgcgctgg
     4921 tcatcgccgc gctgctggag acgggcgagg acattcccgc tctgttcacc ggcggcggct
     4981 atggtcccga gccgctgagc gatgccgagc gcgccgccat tgccgccacg cccgcccttg
     5041 cgccgctctg ggtgcgcggt gagtttccgc aattcctgga aagccagctt gcccgcgctt
     5101 tcggcgatcg cttgctggac gagatggtgg cgctgcagtc gcgcgcgccc gccgacctgc
     5161 gcgtcaatac cctgaaagcc aaacgcgaag acgtgatcgc agcgctgaat gccgacggcg
     5221 tgctgtgcgc cgccacgcct tacgcgccgc acggcatccg catcggcagc gacgccacca
     5281 atctttccaa atcggcgctg tttgaatccg gcgcttttga attccaggac gaggcggcgc
     5341 agatcgcatc cgcgctgtgc ggcgctcagc ccggcatgcg cgtgctcgat cttgcagcag
     5401 gggccggcgg caagagcctt gccttcgccg ccagcatgca gaaccatggc
//
LOCUS       DATMDK010000215         8046 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_342099,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000215 DATMDK010000000
VERSION     DATMDK010000215.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 8046)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8046)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8046
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_342099"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..199)
                     /locus_tag="VNN98_04155"
     CDS             complement(<1..199)
                     /locus_tag="VNN98_04155"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61317.1"
                     /translation="MQRPRTGAGQADGDGASSIRTTKVAWVTRDAQTEDLYLRMEAVV
                     LRLNAELFHFDLSGLSTIQYAV"
     gene            435..1466
                     /locus_tag="VNN98_04160"
     CDS             435..1466
                     /locus_tag="VNN98_04160"
                     /inference="COORDINATES: protein motif:HMM:NF012742.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000976 - transcription cis-regulatory
                     region binding [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA];
                     GO_process: GO:0045892 - negative regulation of
                     DNA-templated transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HWM61318.1"
                     /translation="MTFAKKDASQEADHPAMVTTLSDVAHRAGVGESTVSRVLRNKGS
                     VSQTTRERILKAAADLHYVPNRIAGTLASMTSKLVGIVIPSVGNTVVPEVLAGANQVL
                     EDAGFQPVIGVSNYDPVREETLIESILSWRPSGLLVAGLEHTERAKAMLRGCGVRVVE
                     LLDIDGEGIDIVVGSSHRMAGRKSAEHLLARNYRRIGYVGHDTAIDVRAGKRLEGFRA
                     VMRENGLNIVDQEFSPGGASSVEAGRFGLARLLDRQPALDAIYFSNDDLAIGGYFHCL
                     EHNISIPGQLALFGYNGLEMARLTPLPLSTIRSPRVAMGETGANLLLAGGAAGVVDLG
                     FELVVGATS"
     gene            1656..4697
                     /locus_tag="VNN98_04165"
     CDS             1656..4697
                     /locus_tag="VNN98_04165"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HWM61319.1"
                     /translation="MNTTRLNKLALMCAASLVALTAAAQAQQASNNVESVTVTGSRVI
                     SDITLSPTPLTVMTAEQLQATTPTNIPDALNKLPDFIGGSTPRTQNNGSTNNSGNTLN
                     LRNLGASRTLVLLDGQRVAPSNQTGTVNVDSLPQMLMSRVDVVTGGASAVYGSDAVAG
                     VVNFILDKKFTGFKYDMNAGLSKYGDAAEEKIGIDWGTDLFGGRGHYEMAARVFQQDA
                     IPMNARPYGYQHNTWVQAGSGTAAAPFVNVPQGRLFNQSQTGTINCGSSCSLTNYTFA
                     AAGQIIPMTHGIPTTTSGLESGGDGGYEDNIGTLQSRQRQGEFFNRFSYDITPDINAY
                     VQASWSESGDYSTWAPMVVSSAGSRPNTFFTNNPYLAPVTQTALTAAATAAGNFVKPP
                     VLVAVNGSIGPAVAAGTPFFSDASYVPQIVQGQNAASQGDVYLTKGVDRNLSLTAGLT
                     GKLAKFDWDAFYSHQESRVTVNDPTNTNNARYLAAQDAVIAPAGTQINGVNVGGTIQC
                     WDETQAQFSALYAGCVPINLFNPAQGISQAAFNYLKTDTFWSLTQKLDNVGGSISGGL
                     FGLGLPAGEITGALSAEMRWRTYNMKTNALPTDFVNCTGLRLCTQNGGAPPALYTQNV
                     NAPVSVSDNVWETALELNVPLLKNFPLAQDLNADFAGRYTDYSISGVAETWKIGINDR
                     INDTIRLRGTMSFDIRAPNLNDLYQPVGISSTGFLDLLTTANNSTQLVTKGNAGLSPE
                     VAHTYTLGVVLTPDFLPGFTTSLDYYQTHMSNAITSISYQTTSVQQLCIASAPTYNSP
                     YCALAIRPIAPGQPGYTSTANYPTQVLSSPLNSALVQTEGWNFEADYNFDLADVWSAI
                     PGSVTLRHLATYQPVLETQNLPGTPFVWATQPKTRMTSFIDYTVGDWSFDLENQWLSG
                     AKKATGFVNQVYVAPRISSYNLLDATINRRFDMWGGSSSLYFSVQNIGNTRAPLAPSN
                     ASNPGLFYPTPGSSGSGASGPGSYSYSDVGRYFTIGLKGNF"
     gene            4816..5373
                     /locus_tag="VNN98_04170"
     CDS             4816..5373
                     /locus_tag="VNN98_04170"
                     /inference="COORDINATES: protein motif:HMM:NF025024.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2OG-Fe(II) oxygenase"
                     /protein_id="HWM61320.1"
                     /translation="MTEKAIHRHLISGRELFVCDNMVEPMMIEKIGNLVKTLSYRRKE
                     KSRPGVPGLAAVSEIAPAQMSNNAFLQHLRRIAEEVFPGEELRDQRAYVNSSIYGDSY
                     YLHRDCSEGENHVTALYYANLHWEPDWGGETIFFNDNYNAEAVISLLPGRVVVARGAI
                     LHRGTVPTRSCYEERLTLAYKLTSI"
     gene            complement(5370..7199)
                     /locus_tag="VNN98_04175"
     CDS             complement(5370..7199)
                     /locus_tag="VNN98_04175"
                     /inference="COORDINATES: protein motif:HMM:NF025134.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative 2OG-Fe(II) oxygenase"
                     /protein_id="HWM61321.1"
                     /translation="MPIPASSTAIQNVLVTTTNALRTGNLVAAEIALAPVFGGQLPAN
                     PDLLNIAGTLRMNQGRHDEAAGLFRLAAKAAPREPIFDFNLGLTLSRLGRMEEAETAL
                     RTALKHQPDFEQALFELGALLHRTGRLDEAEKNIRQVLRLTPVHAHAELALAAILVDA
                     GRPAESELASRKGLATAAEPRLKAQLYLQLAQALRRQRKDSEALAALESAEAFDSGLP
                     GLARHRAETLQNLERFDEAVTIFEKEIALAPADPGLHLDYNALLYQLGRSGEFLKSYD
                     RGPQSRELLLGKAFLLAREQRHAEAHSIYAALQARDPGDRLAAIGVAQSLTAMGRPTE
                     AIALFESLLARHGGDASLFGIAAEPALRSGDPQKAAWLCEQGLASAPHNASCLAMLSI
                     ASRMMEDGRDEALNGYDSLVRIFDLDPPEGFSSMESFNAELNASLDRLHPKTREFIDQ
                     SLRGGTQTPSHLFPAGLPLVAKLKSRIDEAVAGYITELDEDAAHPLLSRRGKDFRYSG
                     SWSSRLHASGFHVNHFHPDGWISSCYYVSVPDIVKDEATKQGWIKFGEPAFDAALKNP
                     IRRALQPAPGRLVLFPSYMWHGTVPFQDAAARTTIAFDVVPVA"
     gene            complement(7394..>8046)
                     /gene="fusA"
                     /locus_tag="VNN98_04180"
     CDS             complement(7394..>8046)
                     /gene="fusA"
                     /locus_tag="VNN98_04180"
                     /inference="COORDINATES: protein motif:HMM:NF015706.4"
                     /note="EF-G; promotes GTP-dependent translocation of the
                     ribosome during translation; many organisms have multiple
                     copies of this gene; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="elongation factor G"
                     /protein_id="HWM61322.1"
                     /translation="VPYRETIRKAATARGRHKRQTGGHGQFGDVLLDIAPAQRGSGFS
                     FHDRIKGGVVPKQWIGSVERGVRDYMKNGPLGFPVVDVTVALTDGSYHTVDSSDAAFQ
                     TAGRLAMSEGMPGCTPVLLEPIMRVQVHVPSEATAKVNGLVSGRRGAPLGYDARPGWR
                     GWDTVRCEMPLAEVSDLIVDLRSLTQGVGTYEMEFDRLTELGGKLADTIVATRKAA"
BASE COUNT         1538 a         2551 c         2403 g         1554 t
ORIGIN      
        1 agacggcata ctggatggtg gacaggccgg agaggtcgaa atggaagagc tcggcgttca
       61 gccgcagcac caccgcttcc atccgcaaat acagatcttc ggtctgggca tcgcgggtga
      121 cccaggccac cttggtggtg cggatgctgc tcgcgccatc gccgtcagcc tggcctgctc
      181 cagtgcgagg gcgttgcact ggcgttccag cgagtccaat tgcgccggac tgaacaggtc
      241 gcggcaaacg gccgtgccac cctccatcag gtgaggggtg gcgttcatcc cgcttgtttg
      301 gtgcctgtgc ttgttcattg gcagaagcag cttttattgg tagttttggt ggaaatacaa
      361 cactttccgg cgcgagaccg gcagggcttg gggcaagcct gcgctatttc cagtgaaagt
      421 gtccggggca atgaatgacg ttcgcgaaaa aggacgcttc ccaagaagcc gaccatccag
      481 ccatggtcac gacgctgtcc gatgtcgcgc accgcgccgg cgtcggtgaa agcacggtat
      541 cgcgggtgct gcggaacaag ggctcggtct cgcaaacaac ccgcgagagg attttgaagg
      601 cggcggcgga cctccactac gttcccaacc gcatagccgg aacgctggca tccatgacct
      661 ccaagctggt ggggatcgtc atcccctcgg tcggcaacac ggtggtgccg gaggttctgg
      721 ccggcgcaaa ccaggttctg gaagacgccg gatttcagcc ggtgatcggg gtctccaatt
      781 acgatccggt ccgggaagaa acccttatag agtcgatcct cagttggcgt ccctccggcc
      841 tgctggtggc gggcctggaa cacaccgaac gcgccaaggc catgttgcga ggctgcggcg
      901 tgcgggtggt cgagcttctg gatatcgacg gcgagggcat tgatatcgtc gtcggctcat
      961 cccatcgcat ggcgggccgc aaaagcgccg agcatcttct ggcgcgcaac taccggcgga
     1021 taggctatgt cgggcatgac acggccatcg acgtgcgcgc cggcaagcgg ctggaaggct
     1081 ttcgcgccgt catgcgggaa aacggcctga acattgtgga tcaggaattc tcccccggcg
     1141 gcgcctcgtc ggtcgaggcc gggcgcttcg ggctggcgcg gctgttggac aggcagccgg
     1201 ccttggacgc gatttatttt tccaacgacg atctggccat cggcggttat ttccactgcc
     1261 tggaacacaa catctccatt cccggccagc tggcgctgtt cgggtataac gggctggaga
     1321 tggcgcgcct cacgccgctg cccctgtcga ctatccgctc gccgcgggtg gcgatgggag
     1381 aaaccggggc gaatctgctg ctggcaggcg gggcggccgg ggtggtcgac cttggatttg
     1441 agctcgttgt cggggcgacc agctaaagcg ccgagttctg acaagtaatc acgctccgct
     1501 ctgtattctc tatcaaaagc aaagccttga tcgagagtgt gtctctattt cgcctatggg
     1561 cggaaaaatg gtagcgccat cattttccta ttggcagcgc tgccaatgtc caatagcttc
     1621 gcacccaagc aaaaacaatt tttccagggg gaattatgaa cacgaccaga ctgaacaagc
     1681 ttgcgcttat gtgtgccgcc agccttgttg ccttgaccgc ggccgcccag gcgcagcagg
     1741 catcgaacaa tgtggaatcg gtcaccgtta ccggttcgcg tgttatttcc gacataaccc
     1801 tctcacccac gccgctgacg gtgatgaccg ccgagcagct tcaggccacc accccgacca
     1861 atattccgga cgccttgaac aagctgcctg acttcatagg cggcagcaca ccccggaccc
     1921 agaacaacgg cagcaccaac aattccggca atacgctgaa cctgcgcaac ctcggcgcgt
     1981 cccgcaccct ggtgctgctg gacggtcaac gcgtcgcccc atccaaccag accggcacgg
     2041 tgaacgtgga ctcgctgccc cagatgctga tgagccgggt tgacgtggtg accggcggcg
     2101 cctcggccgt ctatggctcc gacgcggtgg ccggcgtggt caacttcatc ctcgacaaga
     2161 aattcaccgg cttcaaatac gatatgaacg ccggcctctc gaaatatggc gacgccgcgg
     2221 aagaaaagat cggcattgac tggggcaccg atctgttcgg cggccggggc cattatgaaa
     2281 tggccgcccg cgtcttccag caggacgcga ttccgatgaa tgcgcgcccc tatggctatc
     2341 agcacaacac ctgggtccag gccggttcgg gcaccgccgc ggcgcccttt gtcaacgtgc
     2401 cgcaaggccg tctcttcaat cagtcgcaga ccggcacgat caattgcggc agcagctgtt
     2461 cgctgaccaa ttacaccttc gctgccgccg gccaaatcat tcccatgacc cacggtatcc
     2521 cgaccacgac atcgggcctg gagtcgggtg gcgacggcgg ctatgaagat aatatcggca
     2581 ccttgcagtc gcgccagcgc cagggcgaat tcttcaaccg tttcagctac gatattaccc
     2641 cggacatcaa tgcctatgtc caggccagct ggtcggagtc gggcgactac tccacctggg
     2701 cgcccatggt ggtcagctcg gccggctccc ggcccaacac ctttttcacc aacaacccct
     2761 atctggctcc ggtgacgcag accgcgctga ccgcggcggc caccgcggcc ggcaatttcg
     2821 tcaagccgcc ggttcttgtc gccgtgaatg gcagcatcgg accggcggtg gcggcgggca
     2881 caccgttctt ctccgatgcg tcctatgtcc cgcagattgt ccagggccag aacgccgcct
     2941 cccaaggcga cgtttacctc accaagggcg tcgaccggaa cttgagcctg acggcgggct
     3001 tgaccggcaa gctggccaag tttgactggg acgccttcta cagccaccag gaaagccggg
     3061 tcacggtgaa cgaccccacc aataccaaca acgcccgata cctggcggcg caggacgcgg
     3121 tcattgcgcc ggcgggcaca caaatcaatg gcgtcaacgt tggcggcacg atccagtgct
     3181 gggacgagac ccaggcgcaa ttttccgccc tctatgccgg ctgcgtgccg atcaacctgt
     3241 tcaatccggc gcagggcatt tcccaggccg cttttaatta cctgaagacg gataccttct
     3301 ggtccctgac ccagaagctg gacaatgtcg gtggcagcat ctccggcggc ctgttcggcc
     3361 tgggtctgcc ggccggcgag atcaccggcg cgctgtcggc cgaaatgcgc tggcgcacct
     3421 ataacatgaa gaccaacgcc ttgccgacgg actttgtcaa ttgcaccggc ttgcgcctgt
     3481 gcacgcaaaa tggcggcgct ccgcccgcgc tctatactca gaacgtcaat gcgccggtca
     3541 gcgtcagcga caatgtctgg gaaaccgcac ttgagctcaa cgtgcctctg ctcaagaatt
     3601 ttccgctcgc ccaggatctg aacgccgact tcgccggccg ctataccgac tactccatct
     3661 ccggcgtggc tgagacctgg aagatcggca tcaacgaccg gatcaacgat accatccgcc
     3721 tgcggggcac catgtcgttc gatattcgtg caccgaacct gaacgacttg taccagccgg
     3781 tcggcatctc ctcgaccggg ttcctcgatc tgttgaccac cgccaacaac agcacccagc
     3841 tggtcaccaa aggcaatgcc gggttgtcgc ccgaggtcgc tcatacctac acactgggcg
     3901 tcgtgttgac accggatttc ctgcccggct tcaccacctc gctggactat taccagaccc
     3961 atatgtcgaa tgcgatcacc agcatcagct accagaccac gtcggtccag cagctctgca
     4021 tcgccagtgc gccgacttac aattcgccct attgcgcgct tgccatccgg ccgatcgcgc
     4081 ctggtcagcc cggctatacc tcgaccgcga actacccgac ccaggttcta agctcgccgc
     4141 taaacagtgc cctggtgcag accgaaggtt ggaacttcga ggcggactat aattttgact
     4201 tggccgatgt gtggagcgcc atccctggat cggtgacttt gcggcacctt gcgacctatc
     4261 agccggtact cgagacccag aacctgcccg gcacgccctt tgtctgggcg acccagccca
     4321 agacccgcat gaccagcttc atcgactaca cagtaggcga ctggagcttc gacctggaga
     4381 atcagtggct gtcgggcgcg aagaaggcca ccggtttcgt caaccaggtc tatgtggcgc
     4441 cgcgcatttc cagctataac ttgctggacg ccaccataaa ccgcaggttc gatatgtggg
     4501 gtggttcttc gtcgctctat ttttcggtcc agaatatcgg caacacgcgc gcgcctctgg
     4561 ctccgagcaa tgcctccaat cccggcctgt tctatcccac accgggttct tccggctctg
     4621 gcgcttccgg ccctggctct tacagctaca gcgatgtggg ccggtacttc accatcggct
     4681 tgaagggtaa tttctaggat cgccgatatt gtttcccctt gggccggcgc cgcttccgcg
     4741 gcgccggtct ttttttgcct gggcgtcttt gctgtataat ggaacataga cgcacatcga
     4801 aaagagcatg tgaccatgac cgagaaagca atccaccgcc atttgatctc gggccgtgag
     4861 ctgtttgtct gcgataacat ggttgaaccg atgatgatcg agaagatcgg taacctcgtg
     4921 aagacgctca gttaccggcg caaggaaaag agccgccccg gtgtgccggg tctggcggcg
     4981 gtgtccgaga ttgcgcctgc gcaaatgtcg aacaacgcgt ttctgcagca tctaagacgc
     5041 attgcggaag aggtgttccc cggcgaagaa ctgcgtgacc agcgcgccta cgtcaacagc
     5101 agtatctatg gcgacagtta ttatttgcat cgcgattgtt cggaaggcga gaaccacgtc
     5161 acagcgctgt attacgccaa ccttcattgg gagccggatt ggggcggcga aactattttt
     5221 ttcaatgaca attataatgc ggaggccgtg atctccttgt taccaggccg cgtcgtggtt
     5281 gcgcgcgggg ctattcttca ccggggcaca gtgcccacgc ggagttgtta tgaagaacgc
     5341 ctgacccttg cctacaaatt gaccagcatc taggccactg gcaccacgtc gaaagcaata
     5401 gtggtgcgtg ccgccgcatc ctgaaacggc accgtgccgt gccacatgta ggagggaaac
     5461 agcaccagtc tgccgggagc cggctgaagt gcgcggcgga tgggattttt cagcgcggcg
     5521 tcgaaggcgg gctcgccgaa cttgatccag ccttgctttg tggcttcgtc cttcacgatg
     5581 tccggcaccg acacataata gcaggaactg atccagccgt cgggatggaa atgattgacg
     5641 tgaaaaccgc tggcgtgaag ccgcgaggac caagatccgg aatagcggaa atccttgccg
     5701 cgccgcgaca gcaaggggtg cgctgcgtct tcgtccagtt cggtgatata gccagccacc
     5761 gcctcgtcga tccgactttt caatttggcc accaagggca ggccggcggg gaataaatgg
     5821 ctgggagtct gggtgccgcc gcgcaagctc tggtcgatga attcgcgggt cttgggatga
     5881 aggcggtcaa gcgatgcgtt cagttcggcg ttgaagcttt ccatgctgga aaagccttcc
     5941 ggcgggtcca ggtcgaaaat ccgcaccaga ctgtcatagc cgttgagcgc ttcgtcccgc
     6001 ccgtcctcca tcatgcgcga cgcgatgctc aacattgcca ggcaggacgc gttatgaggc
     6061 gcactggcca gcccctgttc acacagccaa gccgccttct gcggatcgcc actccgaaga
     6121 gcaggttcgg cggcgatacc gaacaggctt gcgtcgccac cgtgacgtgc cagcagggat
     6181 tcgaataacg cgatcgcctc ggtaggacgt cccatcgccg tcagcgactg ggcgacgccg
     6241 atggcggcaa gccggtcgcc cggatcgcgc gcctgaagcg cggcgtaaat agaatgtgcc
     6301 tccgcatgac gctgttccct ggcaaggagg aaggcctttc ccagcagcag ctcgcggctt
     6361 tgcggcccgc ggtcatagga tttcaggaat tccccgctgc ggcccagctg gtagaggagc
     6421 gcattataat cgagatgcag gccgggatcg gcgggggcga gcgcaatctc tttttcaaag
     6481 atcgtgacgg cttcgtcaaa acgttccaga ttctgcaagg tttcagcccg atggcgtgcg
     6541 aggccgggca ggcccgaatc gaatgcttcg gcactttcaa gcgccgccag cgcctcgctg
     6601 tccttgcgtt ggcggcgcag agcttgcgcc agctgcagat acaattgcgc cttgaggcgc
     6661 ggctccgccg ctgtggcaag tcctttgcgc gacgcaagtt cagactctgc ggggcgcccc
     6721 gcgtccacca gaatagcggc cagggccagt tcggcatggg catggaccgg cgtcagccgc
     6781 agcacctggc gaatgttttt ctccgcctcg tccaaccgtc ctgtccggtg cagcagcgcc
     6841 cccaactcaa aaagcgcctg ctcgaaatcc ggctggtgct tcaaagcggt gcgcagggcc
     6901 gtctcagcct cttccatccg gccgagccgc gacaaggtca gtcccaggtt gaaatcgaat
     6961 atcggttcgc gcggcgcggc ttttgccgcc aggcggaaca ggccggccgc ttcgtcatgg
     7021 cggccctgat tcatccgcag ggtgcctgcg atgttcagca gatcgggatt ggccggcagt
     7081 tgccccccga aaacaggtgc cagcgcaatc tccgcagcca ccagattgcc ggtccgcagg
     7141 gcatttgttg tggtcaccag gacgttctga atggcggtgg aagaggcagg gatgggcatc
     7201 ctcccagcct atgacgggag gcctggtttt gtctcagaac cgcctcttga aaggcggaaa
     7261 aggcacatta tctctctcct gtccgccttc tctccccccg aaggcgggta ttgccccgct
     7321 ctcctccccc ttgagcgagg tccaaagctg gcgggcggag cgcctttgca ggctgctccg
     7381 cccgcctttt ttgtcaggcg gccttgcgag tggccacgat ggtatcggcc agcttgccgc
     7441 ccaattccgt cagccggtcg aattccattt cataggtgcc cacgccctga gtcagcgagc
     7501 gcaggtccac gatcaggtcg gacacttccg ccagcggcat ctcgcagcgc actgtgtccc
     7561 agccgcgcca gccggggcgc gcgtcatagc ccaggggcgc gccgcgccgc ccgctgacca
     7621 aaccgttgac cttggcggtg gcctcggacg gcacatgcac ctgaacccgc atgatcggct
     7681 ccagcagcac cggggtgcag ccgggcatgc cttcgctcat cgccaggcgg cctgcggtct
     7741 ggaaagcggc gtcggaagaa tccaccgtgt gataggagcc gtcggtcagc gccaccgtca
     7801 catccaccac cgggaatccc agcggaccgt ttttcatata gtcgcgcacc ccgcgctcca
     7861 ccgagccgat ccattgcttg ggcaccactc cgcccttgat gcgatcgtga aaggaaaaac
     7921 cggaaccgcg ctgcgcgggc gcgatatcca gcaacacatc gccgaattgg ccgtgaccgc
     7981 cggtctggcg cttgtgacgg ccgcgcgccg tggcggcttt gcggatggtt tcgcgatagg
     8041 gcacca
//
LOCUS       DATMDK010000216         2530 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2384069,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000216 DATMDK010000000
VERSION     DATMDK010000216.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2530)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2530)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2530
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2384069"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(25..1371)
                     /locus_tag="VNN98_04185"
     CDS             complement(25..1371)
                     /locus_tag="VNN98_04185"
                     /EC_number="1.1.5.-"
                     /inference="COORDINATES: protein motif:HMM:NF019607.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016901 - oxidoreductase activity, acting
                     on the CH-OH group of donors, quinone or similar compound
                     as acceptor [Evidence IEA];
                     GO_function: GO:0070968 - pyrroloquinoline quinone binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-dependent sugar dehydrogenase"
                     /protein_id="HWM61323.1"
                     /translation="MKRLIIALAQILVATALPASLAAQTLSPTPPPAPAPATAGGLPA
                     TPTYSSVEGQPIDSRLPEKKVDTRQFPQQTRAPFHHATDFKVTELTGQLQAAWASALL
                     PDGKLLVTERLPGALRIVSKDGLSAPLTGLDGLHVSTPMTGLLDVVLDPDFAANHTIF
                     FTYFEYFDKTVYNTAVARAVLDENAGAIRDVKVLLKTTPFVPQDQTIEAGTKSGGRIA
                     IGADGFLYVTIGDRDNAGPRPWAIAQYLDTHLGKVVRITKDGAPAPGNPFIGQPGALP
                     EIWALGMRSQEGLAFAPDGGLYEVEHGPRGGDEFNLIKKGSNYGWPLVSHGIDYRGAP
                     IGDGEVAKAGTEQPVYYWSPSTAPSGLAFYTGKSKAWAGSVFVGMLNGRQLDRIKLVG
                     GKVVEEEAMLTGMKARFRDVRMGSDGALYILTDSGGTAITETTPATGQLLKIVPAK"
     gene            1490..1732
                     /locus_tag="VNN98_04190"
     CDS             1490..1732
                     /locus_tag="VNN98_04190"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61324.1"
                     /translation="MRFSITIALLGLALAGCAGPDGNLNGQPYADEPGGAMAAKPQSL
                     GQESYDPYAAPAPFADMQAGQAAIMPPPPLNYTPPR"
     gene            complement(1766..>2530)
                     /locus_tag="VNN98_04195"
     CDS             complement(1766..>2530)
                     /locus_tag="VNN98_04195"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR03558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MsnO8 family LLM class oxidoreductase"
                     /protein_id="HWM61325.1"
                     /translation="EQFGTLAALYPGRIDLGLGRGIAGDPATLQALRRTPNDAAKFPR
                     DVQELLFFLRPAAPGQKVRAIPGEGAQVPVWILGSSLDGAQLAASLGLPFAFASHFAP
                     DQLDVALSAYRGRFVPSAYLDKPEVMLSLTVAAADTDAEARLLFSTAQQANDAPLAPP
                     IANYERTLDPQRLALIKNFFRHSVVGGPDTVARGVADFIARYKPDELIVTAQIFDPAA
                     RLKSFEILSRMCMPSPARVSALALEGEVGGQADRTP"
BASE COUNT          454 a          815 c          826 g          435 t
ORIGIN      
        1 taaagacggc ggacggcgga cgcgctactt cgcgggcacg atcttcagca actgccccgt
       61 cgcgggcgtg gtttcggtga tggcggtgcc gcctgaatcc gtcagaatat aaagcgcacc
      121 gtccgatccc atccgcacat cgcggaagcg ggccttcatg ccggtcagca tggcttcttc
      181 ctcgaccact ttgccgccta ccagcttgat gcggtccaac tgccgcccgt tcagcatgcc
      241 gacgaacaca ctgccggccc aggccttgga cttgccggtg tagaaagcca ggcccgaggg
      301 cgcggtggag ggtgaccagt aatagaccgg ctgctccgtt cccgccttgg ccacctcgcc
      361 gtcgccgatg ggcgcgccgc gatagtcgat gccatggctg accagcggcc aaccataatt
      421 gctgcccttc ttgatcaggt tgaactcgtc gccgccgcgc gggccatgct cgacctcata
      481 cagtccgccg tccggcgcga aagccagacc ttcctggctg cgcatgccca aggcccagat
      541 ttccggcagc gcgcccggct ggccgatgaa aggattgccc ggcgcgggtg cgccgtcctt
      601 ggtgatgcgc accaccttgc ccagatgggt gtcgagatat tgcgcgatcg cccagggccg
      661 cggaccggca ttgtcgcggt cgccgatggt gacatacaga aaaccgtcgg cgccgatggc
      721 gatgcgcccg ccgcttttgg tacccgcctc tatggtctgg tcttggggaa cgaagggcgt
      781 ggtcttgagc agcaccttca catcgcggat ggcgcctgcg ttttcgtcca gcacggcgcg
      841 cgcgaccgcg gtgttgtaga ccgtcttgtc gaaatattcg aagtaggtga agaaaatcgt
      901 gtggttggcg gcgaaatccg gatccagcac cacgtccagc aaaccggtca tgggagtgga
      961 gacatgcaag ccgtccagcc ccgtcagcgg cgccgacaga ccatctttgc tcacgatgcg
     1021 caaagcgccg ggcagccgct cggtcaccag cagcttgcca tccggcagaa gcgcgctggc
     1081 ccaggcggcc tgcagctggc ccgtcagctc cgtcaccttg aaatcggtgg catggtgaaa
     1141 gggcgcgcgg gtctgctggg gaaattgccg cgtgtccact ttcttttccg gcaggcggga
     1201 atcgatcggc tggccttcga cgctgctgta ggtgggggtg gccggcaacc cgcccgccgt
     1261 ggctggtgcg ggggccggcg gtggggtggg agacagtgtc tgggccgcca ggctggcggg
     1321 aagcgcggta gccaccaata tttgggccag cgcgattata aggcgtttca tgaaatcccc
     1381 ctgatttttg cgaacattaa agccttcaca tgggagcgcg acaagggcgg cgggaaccca
     1441 aatggccttg cgatggtttt tattcggcaa acacggaacg gaacgagaaa tgcgattttc
     1501 aatcactatt gccctgctgg gcttggcctt ggccggctgc gcgggcccgg acggcaatct
     1561 caatggacag ccctatgcgg atgagccggg cggagctatg gcggccaagc cgcaatccct
     1621 tggccaggag agctacgatc cctatgccgc gccggcgccc ttcgccgata tgcaggcggg
     1681 acaagcggcg atcatgccac cgccgccatt gaattacaca ccgccgcggt agttgccccc
     1741 tccggccttc gcatcgcaag cgctgctacg gcgttcggtc ggcttggccg ccgacctcac
     1801 cctccaatgc aagcgcgctt acgcgcgcgg gagagggcat gcacatacgg ctgagaatct
     1861 cgaacgactt cagccgcgcg gcaggatcga agatttgcgc cgtgacaatc aattcatcgg
     1921 gcttgtagcg ggcgatgaag tcggccacgc ccctggctac cgtatcgggg ccgcccacca
     1981 ccgaatggcg gaagaagttc ttgatcagtg ccaggcgctg cgggtccagc gtccgctcat
     2041 aattggcaat aggcggcgcc agcggcgcgt cattggcctg ttgcgcggtg gagaacagca
     2101 gccgcgcttc cgcgtcggta tcggcggcgg cgaccgtgag cgacagcatc acttcgggct
     2161 tgtccaaata ggccgaaggc acgaagcgcc cgcgataggc cgatagcgcc acgtccagct
     2221 ggtcgggcgc gaaatgcgaa gcgaaggcga agggcagacc caggctggca gccagctgtg
     2281 ccccgtccag gctggagccc aatatccaca ccggcacctg tgcgccctcg ccgggaatgg
     2341 cgcgcacctt ctggcccggc gccgccgggc gcaggaagaa cagcaactcc tgcacgtcgc
     2401 gcggaaattt cgccgcatcg ttcggcgtgc ggcgcagcgc ctgcaaggtg gctggatcac
     2461 ccgcgatacc gcgccccagg cccagatcga tacgcccagg atacaatgcc gccagggtgc
     2521 cgaactgctc
//
LOCUS       DATMDK010000217         4826 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_342898,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000217 DATMDK010000000
VERSION     DATMDK010000217.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 4826)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4826)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4826
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_342898"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..724
                     /locus_tag="VNN98_04200"
     CDS             <1..724
                     /locus_tag="VNN98_04200"
                     /inference="COORDINATES: protein motif:HMM:NF015983.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HWM61326.1"
                     /translation="IRLARHYFPQVKEFFFDDDTFTDDRPRAEAIARELGKLGVTWSC
                     NAKANVDYETLKELRENGLRLLLVGYESGNQQILHNIKKGLLIPVAKRFAKDCHDLGI
                     VVHGTFILGLPGETRETIQETLKFAKDVNPHTIQVSLAAPYPGTFLYKQAKENGWFAS
                     DVDLLTDDGTQIAPLNYPHLGHTEIFNSVEDFYKKFYFRPSKIAEIVKEMLTSRDMLV
                     RRLREGVEFFQFLKNREDMIVS"
     gene            910..1752
                     /gene="hpnK"
                     /locus_tag="VNN98_04205"
     CDS             910..1752
                     /gene="hpnK"
                     /locus_tag="VNN98_04205"
                     /inference="COORDINATES: protein motif:HMM:TIGR03473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hopanoid biosynthesis-associated protein HpnK"
                     /protein_id="HWM61327.1"
                     /translation="MKNLIITADDFGAAIEVNQAVERAHRDGILSAASLMVSGAAAND
                     AAQRARTMPHLRVGLHLVLVEGKPVLPADAVPGLVDSSGHFRTAMARAGAAMFFRPKV
                     RAQLAAEIEAQFAAFAATGLRLDHVNAHKHFHLHPTIAALIVKIGKTHGLKGARVPLE
                     PQAVLGRVEKRKQSGVAMLTAPFARALRARFRRAGIAAPDSVFGLAWSGAMTQTRLAG
                     LIEHLPDGLSEIYMHPATGPYPGSAPGYQYGAELAALTDPGLPARLVANGIKIGGFAD
                     FPAQ"
     gene            1846..2751
                     /locus_tag="VNN98_04210"
     CDS             1846..2751
                     /locus_tag="VNN98_04210"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="ferritin-like domain-containing protein"
                     /protein_id="HWM61328.1"
                     /translation="MSSPAFAIPPDLTRDTGAWPQPGPIKFGSDAHKRLFCKTLLDTH
                     DPYKPAVLDWPKLGAEAQKRITALPIWDIAVQTENRAGLNVCTYAESVRDPLLRKAIE
                     LNGFEERRHRHVLANLVEAYGIKLAPEPVYEKPKNPEWAFMVTGYSECIDSFFAFGLF
                     KAAKDTGYFPTELVQTFDPVVNEEARHILFFVNWVAWHRRNMPLWRRPYFELKVLAVW
                     LFLIYERMGIASDVSNGQQDNNFTVTGAEQLGSDIDVGELIALCVAENDRRLAPYDNR
                     LKRPRFVPFMARLALKFIGPKKRAA"
     gene            2748..3599
                     /locus_tag="VNN98_04215"
     CDS             2748..3599
                     /locus_tag="VNN98_04215"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61329.1"
                     /translation="MMKIGSPEHRDTFCKHFMQTYTEFEPDSLPWPDLDEAALTRLKS
                     VPFWEEVFYTERRAGAIVAEFVKTVKDPVMKEAVALQGFEEARHAKLIRVMIEKYGVD
                     AAERPLEDVSDNVETRFKDFGFGECMDSFLGFGVFKIALQSEFLPKEMFNIFETLMYE
                     ETRHIVFFVNWMAYNEAQKGFLARVMQPFTDFRFYMRALGRMVGTAKRGKELNDGKEF
                     SATQASVFLDGFTFRRFLEDCYSENRRRMGVFDSELLRPSFLPQLAETALGAMRLWSF
                     RAKPLPA"
     gene            3599..4591
                     /locus_tag="VNN98_04220"
     CDS             3599..4591
                     /locus_tag="VNN98_04220"
                     /inference="COORDINATES: protein motif:HMM:TIGR03476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysylphosphatidylglycerol synthase
                     domain-containing protein"
                     /protein_id="HWM61330.1"
                     /translation="MKLAPKLGVAVALLAGVIAAVYLIWSIGFDAVAASIARAGFGGL
                     ALLCLYALIVFVSLAFAWFFLLPPQYRRPPTDLYLARLVRDSIAEISPFSPVGGMVAA
                     ARLMILKGMNPAYAAASVAADATTEAMAQVAFLAFGLGLGITQFRHMDGSGPLTQAML
                     AVLLLAVPGIALLIFLQKKGAGFAERIAARFFPQAREGVSFHAAIEELYDSRSRLAAS
                     SAFHLIAWIGAGGGTYIAFRLVGGHINLLNAIALEALLCTLRSIAAPVPAAIGVQEWG
                     YAMLAPLFGLPAEMGVAVSLLKRAREIVLGVPALIYWQSIEGRKALTAAEVKNV"
     gene            4584..>4826
                     /locus_tag="VNN98_04225"
     CDS             4584..>4826
                     /locus_tag="VNN98_04225"
                     /inference="COORDINATES: protein motif:HMM:NF013530.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HWM61331.1"
                     /translation="MSDVALVTGASGFVGSAVARSLVARGLHVRVLMRPSANRLNIAK
                     LHCEPVAGDMRDEDSMIAAMKSARYLFHVAADYRLWA"
BASE COUNT          846 a         1529 c         1504 g          947 t
ORIGIN      
        1 gattcgcctg gcgcggcact acttcccgca ggtcaaggag ttcttcttcg acgacgatac
       61 cttcaccgat gatcgtccgc gcgcggaggc gatcgcccgc gagctcggca agctcggcgt
      121 cacctggtcc tgcaatgcca aggcgaatgt cgattacgag acgctgaagg agttgcgcga
      181 gaacggcctc cggcttctgc tcgtcggcta tgagagcggc aatcagcaga tcctgcacaa
      241 catcaagaag ggcctgctga tcccggtcgc caagcgcttc gccaaggact gccacgatct
      301 gggcattgtg gtgcatggca ccttcatcct gggcttgccg ggcgaaaccc gcgagaccat
      361 ccaggaaacc ctgaaattcg ccaaggacgt gaatccgcac accatccagg tgtcgctggc
      421 cgcgccctat ccgggcacct tcctgtacaa gcaggccaag gaaaatggct ggttcgcctc
      481 cgatgtggat ctgctgaccg acgacggcac gcagattgcg ccgctcaact atccgcacct
      541 gggccacacc gaaatcttca attcggtgga ggacttctac aagaagttct atttccgccc
      601 ctccaagatc gccgagatcg tgaaagagat gctgacctcg cgcgacatgc tggtgcgccg
      661 cttgcgcgaa ggcgtggagt tcttccagtt cctcaagaac cgcgaagaca tgatcgtttc
      721 ctagccactt gtgtcatggc ccgccacccc ggctcgcgcg aagcgcgacc ggagtgtaaa
      781 ctccgcgcgg agccacccag ttgggaccgt ctcgaacttg gcaaaatgca acgcagaaca
      841 agctggtgaa accttcccgg tgtcacctgg gtggtccgca tttgcgggcc atgacaatcg
      901 gggtgtgttg tgaaaaacct catcatcacc gctgacgatt tcggcgccgc tatcgaagtc
      961 aatcaagcgg tcgagcgcgc ccatcgcgac ggaattctgt ccgccgccag cctgatggtg
     1021 tcgggcgcgg ccgccaatga cgctgcccag cgcgccagga ccatgccgca tctgcgcgtc
     1081 gggctgcatc tggtgctggt ggagggaaag ccggtgctgc cggccgatgc ggtgcccggc
     1141 ttggtggact catcgggaca ttttcgcacc gctatggcgc gcgccggcgc cgccatgttc
     1201 ttccggccca aggtgcgggc ccaactggcc gccgagatcg aggcccagtt tgcggccttc
     1261 gccgcgaccg gcctccgcct cgatcacgtc aatgcccaca agcatttcca tctgcatccc
     1321 accatcgcgg cgctgatcgt aaagatcggc aaaacccatg ggctgaaggg cgcgcgggtg
     1381 ccgctggagc cgcaggccgt gctgggccgc gtggaaaagc gcaagcagtc cggcgtggcg
     1441 atgctgaccg cgccgttcgc gcgcgccctt cgcgcgcgct tccgccgcgc cgggatcgcc
     1501 gcgccggact ccgtgttcgg cctggcctgg tcgggcgcga tgacgcagac gcgcctggcc
     1561 ggcctgatcg agcacctgcc ggacggtctc agcgagattt atatgcaccc cgccaccggg
     1621 ccttatccgg gctcggcgcc cggctatcag tatggcgcgg aactggcggc gctgaccgat
     1681 ccggggctgc cggccaggct ggtggccaac gggattaaaa tcggcggctt tgccgacttt
     1741 cctgcccaat aacatcaatg gcttaaccca atatttcggg accgcatttt tgggttcaat
     1801 tggccccggc aaaggggtat tgcaggtgcg agaattggag cgtccatgag cagtccggct
     1861 tttgctattc cgcccgatct gacgcgcgac accggcgcct ggccgcagcc tggcccgatc
     1921 aagttcggca gcgatgcgca caagcggctg ttctgcaaga cgctgctcga cacccacgat
     1981 ccctacaagc cggcggtgct ggactggccc aagctgggcg cggaagcgca gaagcgcatc
     2041 accgcgttgc cgatctggga catcgccgtg cagaccgaga accgcgccgg gctgaatgtc
     2101 tgcacttatg ccgaaagcgt ccgcgacccc ttgctgcgca aggcgatcga actgaacggt
     2161 ttcgaggaac gccgccaccg ccatgtgctg gccaatctgg tggaagccta cggcatcaag
     2221 ctggcgcccg agccggttta tgaaaaaccc aagaatccgg aatgggcctt catggtcacc
     2281 ggctacagcg aatgcatcga cagtttcttc gctttcggcc tgttcaaggc ggccaaggat
     2341 accggctact ttcctacgga actggttcag actttcgatc ccgtcgtgaa tgaggaagcc
     2401 cgccacatcc tgtttttcgt gaactgggtc gcctggcatc gccgcaacat gcccttgtgg
     2461 cggcggccct atttcgagct gaaggttctc gcggtctggc tgttcctgat ctatgagcgc
     2521 atgggcatcg cttcggatgt ctccaacggc cagcaggaca acaatttcac cgtcaccggc
     2581 gccgaacagc tgggctcgga catcgatgtc ggcgagttga tcgccctctg cgtggcggag
     2641 aatgaccgcc gtctggcgcc ctatgacaac cgcctcaagc gtccgcgctt cgtgcctttc
     2701 atggccaggc tggccttgaa gttcatcggt cccaaaaaga gagccgcgtg atgaaaatcg
     2761 gatcgccgga acatcgcgac acgttctgca agcatttcat gcagacctat accgaattcg
     2821 agcccgacag tttgccctgg ccggacctgg atgaagccgc gcttacgcgc ctgaaatccg
     2881 tgcccttctg ggaagaggtg ttctataccg agcgccgcgc cggcgcgatc gtggccgaat
     2941 tcgtcaagac cgtaaaagat ccggtgatga aggaagccgt ggcgctgcaa ggtttcgagg
     3001 aagcccgcca cgccaagctg atccgggtga tgatcgaaaa atacggcgtc gacgccgccg
     3061 aacgcccgct ggaagatgtc agcgacaatg tcgaaacccg cttcaaggat ttcggcttcg
     3121 gtgaatgcat ggattccttc ctgggcttcg gcgtcttcaa gatcgcgctg cagtcggaat
     3181 tcctgcccaa ggagatgttc aatatcttcg agaccctgat gtatgaggaa acccgccaca
     3241 tcgtcttctt cgtcaactgg atggcctata acgaggcgca gaaagggttc ctggcccggg
     3301 tgatgcagcc cttcaccgat ttccgctttt acatgcgcgc cctgggccgc atggtcggca
     3361 ccgccaagcg cggcaaggag ctgaacgacg gcaaggaatt ctccgccacc caggcgtcgg
     3421 tgttcctgga cggcttcacc ttccgccgct tcctggaaga ctgctattcg gagaaccgcc
     3481 gccgcatggg cgtgttcgac tccgaattgc tgcgccccag cttcctgccc cagctggcgg
     3541 agaccgcact gggcgccatg cggttgtgga gcttccgcgc caagccgctg cctgcgtaat
     3601 gaagttggcc ccaaagctcg gcgtagctgt cgcgctgctg gccggcgtca tcgccgccgt
     3661 ctatctgatc tggtccatcg gcttcgacgc cgtggcggcc agcatcgccc gcgccggctt
     3721 tggcgggctg gcgctgctct gcctttatgc gctgattgtt ttcgtcagcc tggccttcgc
     3781 ttggttcttt ctgctgccgc cccagtaccg ccgcccgccc acggatttat acctggcgcg
     3841 gctggtgcgc gattccatcg ccgagatttc acctttctcg ccggtgggcg gcatggttgc
     3901 ggcggcgcgg ttgatgatcc tgaagggcat gaacccggcc tatgccgcgg cctcggtcgc
     3961 cgccgatgcc accaccgagg cgatggcgca ggtggcgttt ttggctttcg gtctgggtct
     4021 ggggatcacg caattccgcc atatggatgg ctcgggcccg ctgacccagg cgatgctggc
     4081 ggtgctgctg ctggcggtgc cgggaatcgc gctgctgata tttctgcaga aaaagggcgc
     4141 cgggtttgcg gaacggatcg cggcgcgctt cttcccccag gcgcgcgaag gcgtgtcctt
     4201 ccacgccgcc atcgaagaac tttacgattc acgcagccgg ttggcggcat cgtcggcatt
     4261 ccatctcatc gcctggatcg gcgccggcgg cggcacctat atcgcctttc ggctggtggg
     4321 cgggcacatc aatcttttga acgccattgc cctggaggca ttactctgca ccttgcgcag
     4381 tatcgccgct ccagtgccgg cggcgatcgg ggtgcaggaa tggggttatg ccatgctggc
     4441 gccgttgttc ggccttcccg ccgaaatggg tgtggcggtc tcgctgctca agcgggcgcg
     4501 cgagattgta ctgggggtgc cggcgctgat ttattggcaa agcatcgaag gccgcaaagc
     4561 gctgacggca gccgaggtca aaaatgtctg acgtggcgct ggtcaccggt gcgtccggtt
     4621 ttgtcggctc tgccgtggcg cggtcgctgg tagcgcgggg cttgcatgtg cgggtgctga
     4681 tgcggcccag cgccaaccgg ctgaacatcg ccaagctgca ctgcgagccg gtggcaggcg
     4741 acatgcgcga cgaagattcc atgatcgccg ccatgaaaag cgcgcgttac ctgttccatg
     4801 tcgcggccga ttaccggtta tgggcg
//
LOCUS       DATMDK010000218         2091 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_3307380,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000218 DATMDK010000000
VERSION     DATMDK010000218.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2091)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2091)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2091
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3307380"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..197)
                     /locus_tag="VNN98_04230"
     CDS             complement(<1..197)
                     /locus_tag="VNN98_04230"
                     /inference="COORDINATES: protein motif:HMM:NF022457.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Kdo hydroxylase family protein"
                     /protein_id="HWM61332.1"
                     /translation="MPEIIESLPLDRWTGPYDAALKARAVSALERGAVLFFPHLAFTL
                     SDAEKLFLDAKVADGKAKNISL"
     gene            complement(185..1396)
                     /locus_tag="VNN98_04235"
     CDS             complement(185..1396)
                     /locus_tag="VNN98_04235"
                     /EC_number="3.1.1.103"
                     /inference="COORDINATES: protein motif:HMM:NF012371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase domain-containing protein"
                     /protein_id="HWM61333.1"
                     /translation="MSTHAGFSEAGLGRIPRFLETQIAAGALPGALTLIWRRGRGAHH
                     SLVGAMDVARATAMRRDAIFRLYSMTKPVTITALLMLMEEARIALDDPVSRFIPAFAN
                     LKLADGTAPRRAMTVLDLARHTAGLTYGFHHRTPIDAAYRTQRIAEMDTEGGLPAMIG
                     QLEKLPLEYSPGDAWIYSVAIDVLGYLIQLVSGQSYADFVRERILAPLKMTDTDFQVA
                     ESKRDRFTACYMFKDDKLDLFDDPQNSPWFAPPKLESGGGGLAGTADDYLRFCRMLLN
                     RGELEGVRLLSPKSVALMTMNHLPGGVEIAALSPAADAFNESGYRGVGFGLGVAVTLD
                     PARVGIPGTAGEFTWGGMASTTFFVDPQEDMAVLFMTQVIADTARRVRLRRDLRTLIY
                     GAMTESYACQK"
     gene            1422..>2091
                     /locus_tag="VNN98_04240"
     CDS             1422..>2091
                     /locus_tag="VNN98_04240"
                     /inference="COORDINATES: protein motif:HMM:NF012711.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I adenylate-forming enzyme family protein"
                     /protein_id="HWM61334.1"
                     /translation="MNDRSKNWPALSLEEAHARLTAPGAGFETTDALVRGVTMRVWKH
                     VPATAAEAFAQARRHGSSEFLVYQDERVSYEGFTRAALRVSALLAEHGVNKGDRVALV
                     MRNLPEWPVIFMGALLAGAIAVPLNAWWTGTELAYGLLDSGARFVFADAERLARLKDL
                     PPSVEQVFVTRAANPPPGVIVLEDVIGAPARWQDLPQSPMPDMVLQPEDDATIFYTSG
                     TTGAP"
BASE COUNT          375 a          666 c          679 g          371 t
ORIGIN      
        1 agcgaaatgt tcttggcctt gccgtcggcc accttggcat cgagaaatag tttttccgcg
       61 tccgacaggg tgaaggcgag gtggggaaag aacagcaccg cgccgcgctc cagggcggag
      121 acggcgcgcg ccttcagcgc cgcgtcatac ggccctgtcc acctatccag cggcaaactt
      181 tcaattattt ctggcaagca tagctttccg tcatcgcgcc atagatcagc gtccgcaaat
      241 cgcggcgcag cctgacccgc cgcgccgtat ccgcgatcac ctgggtcatg aatagcacgg
      301 ccatgtcttc ttggggatcg acgaagaagg tggtcgaggc catgccgccc caggtaaatt
      361 cccccgccgt gccgggaatg cctacccgcg ccgggtccag ggtcaccgcc acgcccagtc
      421 cgaagccgac gccgcgatag ccgctttcgt tgaaggcatc ggcggcgggc gacagagcgg
      481 ctatctccac acctcccggc agatggttca tggtcatcag cgccacgctt ttgggcgaca
      541 gcagccgtac gccctccagc tcgccccggt tcagcagcat gcggcagaag cgcagatagt
      601 catccgccgt gcccgccagc ccgccaccgc cggattccag tttggggggc gcgaaccagg
      661 gggaattctg cggatcgtca aacaggtcga gcttgtcgtc cttgaacatg tagcaggcgg
      721 tgaagcgatc gcgcttgctt tccgccacct gaaaatcggt atccgtcatt ttcaacggcg
      781 ccaggattct ctcccgcacg aagtcggcat agctttggcc ggacaccagc tggatcagat
      841 accccagcac gtctatcgcc accgaataga tccaggcgtc accgggagaa tattccagcg
      901 gcagcttttc cagttgcccg atcattgcgg gcaggccgcc ctcggtgtcc atttccgcga
      961 tgcgctgggt gcgataggcc gcgtcgatgg gcgtgcgatg gtgaaagcca taggtgaggc
     1021 cggcggtgtg gcgcgccagg tccagcaccg tcatggcgcg gcggggcgcg gtgccgtccg
     1081 caagcttcag attggcgaag gcgggaatga aacgcgacac cggatcgtcc agcgcgatgc
     1141 gggcctcctc catcagcatc agcaaggccg tgatggtgac gggcttggtc atggaataaa
     1201 gccggaaaat ggcgtcccgg cgcattgccg tggcgcgcgc cacatccatc gcgcccacca
     1261 ggctgtgatg cgccccgcgt ccgcgccgcc agatcagggt gagggcgccg ggcagcgccc
     1321 cggccgcgat ctgggtctca agaaagcgcg ggatgcgccc cagccctgct tccgaaaaac
     1381 ctgcgtgcgt ggacataagg ttggttatac taagccttgt catgaatgac aggtccaaaa
     1441 actggccggc attgtcgctg gaagaggcgc atgcgcgcct taccgcgccg ggcgcgggtt
     1501 ttgaaaccac cgatgccctg gtgcgcgggg tgacgatgcg ggtgtggaaa catgtgcccg
     1561 ccacggcggc cgaagccttc gcccaggcgc gccgccatgg aagcagcgaa ttcctggtct
     1621 atcaggacga gcgggtcagt tatgagggtt tcacccgcgc ggcgctgcgg gtctcggcct
     1681 tgcttgccga gcacggcgtg aacaagggcg accgggtggc gctggtaatg cgcaacctgc
     1741 cggaatggcc ggtgatattc atgggcgcgc tgctggcggg ggccatcgcc gtaccgctca
     1801 acgcctggtg gacgggcacc gaactggctt acggattgct ggattccggg gcgcgctttg
     1861 tttttgccga tgccgaacgg ctggcgcggc tgaaagacct gccgccgtcc gtcgaacagg
     1921 tgtttgtcac ccgtgccgcc aatccgccgc cgggcgtcat tgtgctggaa gatgtcattg
     1981 gcgcgccggc acgctggcag gatctcccgc aaagcccgat gcccgatatg gtgttgcagc
     2041 cggaagacga tgccacgatt ttttatacct ccggcaccac cggcgccccc a
//
LOCUS       DATMDK010000219         3826 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_3307831,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000219 DATMDK010000000
VERSION     DATMDK010000219.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3826)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3826)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3826
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3307831"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1467)
                     /locus_tag="VNN98_04245"
     CDS             complement(<1..1467)
                     /locus_tag="VNN98_04245"
                     /inference="COORDINATES: protein motif:HMM:NF019335.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor plug domain-containing
                     protein"
                     /protein_id="HWM61335.1"
                     /translation="MNKRLVKILMAGVSPVFVLMLGGPAFAQSTATQAVEGIESVTVT
                     GEHEITGIMKPITVPKERSTISQDFINTQPAGQSVFDMLNKVPGYNFTNNDPYGNSGG
                     DIRIHGFDGNHISFTWDGMPLNDTGNYAIFTNQVADAEVIGSASVNQGTTDVDSPTAS
                     ATGGVVSIVTSRPKDDWGAEMDTSFGSNNYKREFLRLDTGEFGPWNTTAFVSGSYTIY
                     DKFKGPGFLQKKQFNAAIYQDLGDLGWIQLAMHWNSNRNNFYNNPTFYPTVSTLAPTI
                     VAGVAVPGVFTGTVPPPLGTTGFPGAPNLAYSPTGSFTGTGRTDNVLGFGFQFDEQPT
                     CPRAAATPGKADLDNLCTSFYGVRINPSDTGNIRLSSLFHLSDDLSLTVDPSIQYVLA
                     NGGGYTSLSETDPRLAGSRFPAIGGRDLNGDGDSLDTIGVYSPNNTNTIRYGLNTSLV
                     WRIDPDNTVQLAYTGDFGFHRQTGQYGVLDANGHPFDPF"
     gene            1960..3447
                     /locus_tag="VNN98_04250"
     CDS             1960..3447
                     /locus_tag="VNN98_04250"
                     /EC_number="1.2.1.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR01722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0018478 - malonate-semialdehyde
                     dehydrogenase (acetylating) activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA-acylating methylmalonate-semialdehyde
                     dehydrogenase"
                     /protein_id="HWM61336.1"
                     /translation="MKTVPHIISGKTVTGSGHSPVFNPATGEQSAQVPAGGVVEIDAA
                     VTAARAALPAWAATTPAKRAKVMYEMRRLLEARKDEIARAISAEHGKTHTDALGEVAR
                     GQEVVEFACAIPQLLKGAFSKNVSSGVDCYDERQPLGVVAGITPFNFPVMVPLWMMPM
                     ALACGNAFILKPSERDPSAPSLLFELWREAGLPDGVLHVVHGGKAAVDAILDHPGIAA
                     VSFVGSTPIAHYVYTRGCAAGKRVQALGGAKNHLVVMPDADLDQAADALMGAGYGSAG
                     ERCMAVSVAVPVGDKTADALVAKLKPRVAALKIGPSSDPVAEMGPLVTQAHRDKVSSY
                     INAGAAAGAELVVDGRGLKLQGYENGFWLGGTLLDRVTPQMSVYTDEIFGPVLSVVRA
                     GTYEDAVGLINASPFANGTALFTRDGDAARDFADRIQVGMVGINVPIPVPVGFHSFGG
                     WKSSLFGSHGIYGPEAIYFYTRLKTVTSRWPAGIRAGAQFNFTER"
     gene            3479..3736
                     /locus_tag="VNN98_04255"
     CDS             3479..3736
                     /locus_tag="VNN98_04255"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61337.1"
                     /translation="MRVAFTLAALLAFMAPAMAQPTIVCGYGQPCPNGNPVPFPVINP
                     VQGLSNVLTYPLRRNQPPPPPTWAQAPIATPPPVLPPAAAP"
BASE COUNT          701 a         1126 c         1270 g          729 t
ORIGIN      
        1 gaaaggatcg aaggggtggc cgttggcgtc cagcactcca tattggccgg tctggcgatg
       61 gaagccgaag tcgccggtat aggccaattg cacggtgttg tccgggtcta tgcgccacac
      121 cagcgaggta ttgaggccat agcggatggt gttggtgttg ttggggctgt agacgccgat
      181 cgtgtccagc gagtcgccgt cgccgttgag gtcccggccc ccgatggcgg ggaaccgcga
      241 gcccgccagg cgcggatcgg tttcgctgag cgaggtatag ccgccgccgt tcgccagcac
      301 atactggatg ctgggatcca cggtcagcga caggtcatcg ctcaggtgga acagcgagga
      361 caggcggata ttgccggtat cggagggatt gatgcgcacg ccgtagaagc tggtgcagag
      421 attgtcgaga tcggccttgc ccggtgtggc cgccgcccgg gggcaagtgg gctgttcgtc
      481 gaactgaaag ccaaagccca gcacattgtc ggtacggcca gtaccggtga agctgccggt
      541 gggcgaatag gccaagttcg gcgcgccggg aaacccggtg gtgcccagcg ggggcggcac
      601 cgtgccagtg aaaacgcccg gcacggcaac gccagccacg atggtcggcg ccaaggtgga
      661 gacggtcgga tagaaagtgg gattgttgta gaaattgttg cggttggaat tccaatgcat
      721 cgccagctgg atccagccca gatcgcccag atcctggtaa atggcggcat tgaactgctt
      781 tttctgcagg aagccaggcc ccttgaactt gtcatagatg gtgtaggagc ccgagacgaa
      841 ggcggtggtg ttccaggggc cgaattcgcc ggtgtcgagg cgcaggaatt cgcgcttgta
      901 attgttggag ccgaagctgg tgtccatctc cgcgccccag tcatccttgg ggcggctggt
      961 gacgatggag acgacgccgc cggtggccga ggcggtgggg ctgtccacgt cggtggtacc
     1021 ctgattgacg ctggctgagc cgatcacttc ggcatccgcc acctggttgg tgaagatggc
     1081 atagttgccg gtgtcgttca gcggcatgcc gtcccaggta aaggaaatgt ggttgccgtc
     1141 gaagccatgg atgcggatat cgccgccgga attgccatag gggtcgttgt tggtgaagtt
     1201 atagcccggc accttgttca gcatgtcgaa caccgactgg ccggcgggct gggtgttgat
     1261 gaagtcctgg ctgatggtgg agcgttcctt gggcacggtg atcggcttca tgatgccggt
     1321 gatctcatgt tcgccggtga cggtgaccga ttcgatgcct tcaaccgcct gggtggcggt
     1381 ggattgtgcg aaggccggcc cgcccagcat cagcacaaag accgggctca cgcccgccat
     1441 cagaattttc accagtcgct tgttcatttt cagtcccccg aatgtctctt cacgcggacg
     1501 cgcgaagacg ggcctgcata ccgatacagg ccgtggttaa atgccggcga tttttgtgat
     1561 cttcgcagtc gcgaaggtcc catcacccgc ctgtgtggta gattgcggaa tcttcagatt
     1621 tgtgacccgc atatgtcggt tttgatacgc acgagaaatg tagccgcgcg cacaggatag
     1681 gtagattttc gcagggcaaa aaacaggaac tttttccgcg acagttttga ttcaaaatca
     1741 cgacagcaca aaaaatatgc aggaaacacg cgactgcatt catcaaatcc atgatgtggc
     1801 gaagaagggg gcagatatcc gcggcgccta ggacttccca ccgacaccgc atgcatgttg
     1861 tggacaaggc tgcggcgaaa ggccccgaca tatctcgcgg acggcacggc aaggcgggcg
     1921 aatctttgaa accgtccccg gcatgctaaa ggagggggca tgaagaccgt tccccacatt
     1981 atctccggaa aaaccgtgac cggaagcggg catagcccgg ttttcaaccc cgccaccggc
     2041 gagcaaagcg cccaggttcc ggccggcggg gtggtggaga tcgacgccgc ggtgacggcg
     2101 gcgcgtgccg ccttgcccgc ctgggcggcg accacgcccg ccaagcgggc caaggtcatg
     2161 tacgagatgc gccggttgct ggaggcgcgt aaggacgaga tcgcccgcgc catcagcgcc
     2221 gagcatggca agacccacac cgacgcgctg ggcgaagtgg cgcgcggcca ggaagtggtg
     2281 gaattcgcct gcgccatccc gcagttgctg aagggcgctt tcagcaagaa tgtttccagc
     2341 ggggtggact gttacgacga acgccagcct ttgggcgtgg tggcggggat caccccgttc
     2401 aactttcccg tcatggtgcc gctgtggatg atgcccatgg cgctggcctg cggcaacgca
     2461 ttcatcctca agccctcgga gcgcgatccc agcgcgccca gcctgctgtt tgagctgtgg
     2521 cgcgaagcgg gattgccgga cggggtgctg catgtggtgc atggcggcaa ggcagcggtg
     2581 gacgccattc tcgaccatcc cggcattgcg gcggtcagtt tcgtcgggtc cacgcccatc
     2641 gcgcattatg tctatacgcg cggctgcgct gccggaaagc gggtgcaggc gctgggcggg
     2701 gcgaaaaacc atctggtggt gatgcccgat gccgatctcg accaggccgc cgatgccttg
     2761 atgggcgcgg gctatggctc ggcgggggaa cgttgcatgg cggtgtcggt ggcggtgccg
     2821 gtgggcgata agactgccga tgccttggtc gccaagctga agccacgggt tgcggcgctg
     2881 aagatcggcc cgtctagcga tcctgtggcc gaaatggggc ccttggtgac ccaggcgcac
     2941 cgcgacaagg tctcttctta cataaatgcg ggggcggccg ccggcgccga actggtggtg
     3001 gacggccgcg gcctcaaatt gcagggctat gaaaacggct tctggctggg cggtactctg
     3061 ctggaccgtg tcacaccgca gatgagcgtc tacaccgacg agatcttcgg ccccgtcctg
     3121 tcggtggtcc gcgccggcac ttacgaagat gcggtcgggc tgatcaatgc cagccccttc
     3181 gccaacggca ccgccttgtt cacccgcgac ggcgatgcgg cccgcgactt cgccgaccgc
     3241 atccaggtcg gcatggtggg gatcaatgtc cccatcccgg tgccggtggg ctttcattct
     3301 ttcggaggct ggaaatcctc cctgttcggc agccatggaa tttatgggcc tgaagccata
     3361 tacttctata cccggctgaa gacggtgacc tcgcgctggc ccgccggtat ccgcgctggc
     3421 gcccagttca acttcaccga gcggtgaaac gattcgatat caggaacgtt ctgacagtat
     3481 gagagtcgct ttcaccctcg ccgccctgct tgccttcatg gcgcccgcca tggcgcagcc
     3541 gaccatcgtg tgcggctatg gccaaccctg tccgaatggc aatcctgtgc ccttcccggt
     3601 gatcaatccc gtccagggat tgagcaacgt tcttacctat ccccttcggc gcaatcagcc
     3661 gccgcccccg ccgacatggg cccaagcacc catcgccacg ccgccgccgg tgctgccgcc
     3721 cgccgccgcg ccttagatgc ctcactcaga aagtgccccc actcataaaa tgagagtgcg
     3781 cgcccgcagc aggcggggtg acggctttgt gaagcccagg ccttgg
//
LOCUS       DATMDK010000220         2792 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_3308156,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000220 DATMDK010000000
VERSION     DATMDK010000220.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2792)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2792)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2792
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3308156"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(71..1843)
                     /locus_tag="VNN98_04260"
     CDS             complement(71..1843)
                     /locus_tag="VNN98_04260"
                     /inference="COORDINATES: protein motif:HMM:NF014543.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61338.1"
                     /translation="MSWIAKAALAAALLNCGLLNASATDTSDNQSNGQWLKDGACSLF
                     SAGAGPGDTVSWTGPCMDGYAEGLGTATFTHDGQSQIFTASFSHGVIPDGHVITRWGQ
                     GWSYDGETVHGRFDGAGILTTDARDRFEGQWTDGKMTGFGVLRRANGELYFGDWKDDK
                     PNGKGELHHADGTLVSGLFSDGKLISDTKVISDGGQAKTDTAIKVAATASDATAKLSG
                     APFGSISGKTLTGVDGSSIALNLIEGGMELQVMPTDGTARKTTFTFMTDRMGTVVEDS
                     SSPNAGSSVTGFFRLTGKGVEIRYSDGRSAMLSASPDGGVQMALDGDAGPACRAWYPA
                     GHQFSDGEKKMALNAYASKLGLPVAVSDTSTGCSAAPKPQASNSAPAPGAIVPIPTPR
                     ALASRARPERHVAVKVPARIAKASYRIGDYQPGKDPEMVTVKTSEIHLIDAPAADAAK
                     QTSAIAVPSISGTVAITAPVAAPVDKTDASHCLKVDSDGSHWGFRNACDFAVQFAYCM
                     AGGSDSLTACGPKDAVTTSAIGSVAANGFGALMADTSLKEQDASHNFRWIACGGGAGE
                     VVAHLDHFEPPAGRCERTRSASAN"
     gene            complement(2204..>2792)
                     /locus_tag="VNN98_04265"
     CDS             complement(2204..>2792)
                     /locus_tag="VNN98_04265"
                     /EC_number="4.2.1.8"
                     /inference="COORDINATES: protein motif:HMM:NF015727.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008927 - mannonate dehydratase activity
                     [Evidence IEA];
                     GO_process: GO:0006064 - glucuronate catabolic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="mannonate dehydratase"
                     /protein_id="HWM61339.1"
                     /translation="AAKNPPLTRAGEVGDDAFWERINYFLERVVPVAAENKVRIACHP
                     QDPGMPPQGYRGIHNVLGTPDGLKKFIALHENPYHGLNFCQGTVSEDLFHPNDELPDV
                     IRYFGSRKKIFNVHFRNIRGGRNNFVAEMFPDEGDVDFVKMLKVYREVGYEDLLMPDH
                     APKVVGEDAEWGTNENFAFEFGYIRGLIQSEKHLV"
BASE COUNT          515 a          849 c          875 g          553 t
ORIGIN      
        1 ccaaggccgg attcgataaa gcgagcagtg cgatggaagc acaagcggtt ttcagcatgg
       61 tcgtgttcct tcagtttgcg gaagcggagc gggtgcgttc gcagcgcccg gccggcggtt
      121 cgaaatggtc cagatgcgcc accacttccc cggcgccgcc accacaggcg atccagcgga
      181 aattgtggga cgcgtcttgt tccttcaggc tggtgtcggc catcaatgcg ccgaaaccat
      241 tggcggcaac gctgccgatg gcgctggtcg tcaccgcatc cttaggcccg caggcggtga
      301 ggctgtcgct gccgcccgcc atgcaatagg cgaactgcac tgcgaaatcg caagcgttgc
      361 ggaaacccca atgactgccg tcgctgtcca ccttcagaca gtgcgaggcg tcggtcttgt
      421 cgaccggagc cgctacaggc gcagtgatgg ccacggtgcc gctgatcgac ggcaccgcga
      481 tggcgctcgt ttgtttggcg gcgtccgccg ccggggcatc gatcaagtga atctccgacg
      541 tcttcaccgt caccatctcc gggtccttgc ccggctgata gtcgccgatg cgataagagg
      601 ctttggcgat gcgcgccggg accttcaccg cgacatggcg ctcgggacgc gcccgcgaag
      661 ccagggcccg cggcgtcggg atggggacga tggcgccggg cgcgggtgcg ctattggagg
      721 cttgcggctt gggcgccgcc gagcagcccg tgctggtgtc gctgacggcc acgggcaggc
      781 ccagcttgct ggcataggcg ttcagcgcca ttttcttttc gccgtcgctg aactggtgcc
      841 ccgccggata ccaggcgcgg caggccgggc cggcatcgcc gtccagcgcc atctgcaccc
      901 cgccatcggg actggccgac agcatggccg agcggccatc ggagtagcga atctccacac
      961 ccttgccggt aaggcggaag aagccggtga cgctggagcc cgcattcggg ctgctgctgt
     1021 cttccaccac cgtgcccatg cggtcggtca tgaaggtgaa ggtggtcttg cgggcggtgc
     1081 cgtcggtcgg catcacctgc aattccatgc cgccctcgat caggttgagg gcgatggacg
     1141 agccatccac ccccgtcagg gtcttgcccg atatgctgcc gaagggcgcc ccggagagtt
     1201 tggcagttgc gtccgacgcg gtggcggcga ccttgatggc ggtatcagtc ttggcctgcc
     1261 cgccgtcgga gatcaccttg gtgtctgaga tcaatttgcc gtccgagaag agcccactca
     1321 ccagggtgcc gtcggcatgg tgcagctcgc ccttgccgtt gggcttgtcg tctttccagt
     1381 caccgaaata aagctcgcca ttggcgcggc gcaggacacc gaagccggtc atcttgccgt
     1441 cggtccactg gccttcaaag cggtcgcggg cgtcggtggt caggataccc gcgccatcga
     1501 agcggccatg caccgtctcg ccgtcataac tccagccctg tccccagcgg gtgatgacat
     1561 ggccgtccgg aatcacgcca tgactgaagc tggcggtaaa gatttgcgat tggccgtcat
     1621 gggtgaaggt ggcggtgccc agaccttcgg catagccgtc catacaggga ccggtccagc
     1681 tcacggtgtc gccgggcccg gcgccggcgc tgaacaggga acaagccccg tctttcagcc
     1741 attgaccgtt gctctgatta tcggatgtgt ccgtcgccga agcattcaac aagccgcagt
     1801 tcagcaatgc ggcggccagc gcggccttcg cgatccacga catatttttt ctcgatgtgg
     1861 agagcccagc cccattgccg cgctcttagc aaagaggctg cgccgttttt ttgacatttt
     1921 ctagatcaag gcgacatcgc agcaaaagaa tctttaatgg agtcgcagaa aagatacgca
     1981 atgcaggaaa ggcccatttt atcggtgcta aatggcactg tccgttcacg gaactattcg
     2041 ccggacgttc atctttatgg cggagtttca tgccgttcat ctgaggttca tctagatgaa
     2101 cggcggaaca aaaaaagcgg tgatcgagat acaaaccgct ccaaatgcaa agagcgccgc
     2161 catcatggcg acgctcttca acttttgcgc gaagcaggct gggtcagacg agatgcttct
     2221 cggactggat cagcccgcga atatagccga actcgaaggc aaaattctca ttggtgcccc
     2281 attccgcgtc ttcacccacc accttggggg catggtcggg catcaagagg tcttcataac
     2341 cgacttcacg atagaccttc agcatcttga cgaaatccac atcaccttcg tcggggaaca
     2401 tctcggcgac gaagttgttg cgcccgccgc ggatattgcg gaagtggacg ttgaagatct
     2461 tcttgcgact gccgaaatag cggatcacat cgggcagttc gtcattggga tggaacagat
     2521 cttccgaaac cgtgccctgg cagaagttga gcccgtgata gggattttca tgcagggcga
     2581 tgaatttctt caatccgtcg ggagtgccca gcacattgtg gatgccgcga tagccttgcg
     2641 gcggcatgcc gggatcctgg ggatggcagg cgatgcggac cttgttttcg gcggccaccg
     2701 gcaccacccg ttccaggaaa tagttgatgc gctcccagaa ggcatcgtcg cccacttccc
     2761 cggcgcgggt cagcggcggg ttcttggcgg cg
//
LOCUS       DATMDK010000221         3253 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_3068123,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000221 DATMDK010000000
VERSION     DATMDK010000221.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3253)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3253)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3253
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3068123"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..740)
                     /gene="tyrS"
                     /locus_tag="VNN98_04270"
     CDS             complement(<1..740)
                     /gene="tyrS"
                     /locus_tag="VNN98_04270"
                     /EC_number="6.1.1.1"
                     /inference="COORDINATES: protein motif:HMM:TIGR00234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004831 - tyrosine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006437 - tyrosyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine--tRNA ligase"
                     /protein_id="HWM61340.1"
                     /translation="MPPAPQFQSEFLRTFTARGAYYDCSAPAELDALFAKECVTAYIG
                     FDCTADSLHVGNLVQLMTLRRLQQAGHKPILLMGGGTTKVGDPSGKDETRQLLTNAQI
                     EANKQSILASIRHLLKFGDGPSDAILVDNAEWLDKLEYISFLREVGRHFSVNRMLTMD
                     SVKLRLDRDQPLSFLEFNYSIMQAYDFVELHKRYACKLQSSGSDQWGNIVSGIELGRR
                     MESAQLFGLTTPLITTASGAKMGKTAAGA"
     gene            780..1691
                     /locus_tag="VNN98_04275"
     CDS             780..1691
                     /locus_tag="VNN98_04275"
                     /EC_number="2.7.1.170"
                     /inference="COORDINATES: protein motif:HMM:NF007141.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006040 - amino sugar metabolic process
                     [Evidence IEA];
                     GO_process: GO:0009254 - peptidoglycan turnover [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="anhydro-N-acetylmuramic acid kinase"
                     /protein_id="HWM61341.1"
                     /translation="MDEILKVIGLMSGTSLDGIDAALLESDGEDVVRPGPSLTVPYDK
                     DTRALLRSSLDAARDVAQGAPVPHSIREAERVLTLAHAKAVTALLDKAGLAADQVSLI
                     GFHGQTILHRPERHWTWQIGDGALLARLTGIDVINDFRSADVKAGGQGAPLMPLYHAA
                     LARKSGRAEPLVVVNIGGVAQVTYIKGDLVLAFDTGPGNAPIDDWMHRHSGKPVDEDG
                     AFAATGKVNDSALAKMLDHAYFDRAPPKSLDRMDFGMAAVEGLSPEDGAATLTAFTAA
                     SLAQARAYFPEPAANWIVSGGGRHNRT"
     gene            1688..1870
                     /locus_tag="VNN98_04280"
     CDS             1688..1870
                     /locus_tag="VNN98_04280"
                     /EC_number="2.7.1.170"
                     /inference="COORDINATES: protein motif:HMM:NF015647.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016773 - phosphotransferase activity,
                     alcohol group as acceptor [Evidence IEA];
                     GO_process: GO:0006040 - amino sugar metabolic process
                     [Evidence IEA];
                     GO_process: GO:0009254 - peptidoglycan turnover [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="anhydro-N-acetylmuramic acid kinase"
                     /protein_id="HWM61342.1"
                     /translation="MKARVNAPVIAAEDAGWDGDALEAEGFAYLAVRAKKGLPLSLPT
                     TTGVKEPMTGGKYWKT"
     gene            complement(1977..2633)
                     /locus_tag="VNN98_04285"
     CDS             complement(1977..2633)
                     /locus_tag="VNN98_04285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020044860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HWM61343.1"
                     /translation="MPDIILPGSAGRIEARYQRQKNPGAPMALVLHPHPQFGGTMNNP
                     LVYDLFHMFHGLGCTTVRFNFRGVGRSQGSFDNGAGELSDAAAVLDWMNTLYPNPSNV
                     WVCGISFGAWIGMQLLMRRPEITGFVSIAPPASMYDFAFLAPCPASGLIVHGTKDNVV
                     PEPDVQKLVDRLTAQKGIKITYDKIDGANHFFDKREEEVVETVKGYVSNMMSKPREGR
                     "
     gene            2889..>3253
                     /locus_tag="VNN98_04290"
     CDS             2889..>3253
                     /locus_tag="VNN98_04290"
                     /inference="COORDINATES: protein motif:HMM:TIGR00738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rrf2 family transcriptional regulator"
                     /protein_id="HWM61344.1"
                     /translation="MRLSTKGRYAVMAMADLAGNAVNAQIPGDPRPVALADIAARQDI
                     SLSYLEQLFAKLRRGGLVTSVRGPGGGYRLSRPSGELRIADIILAVDEPIAATRCKTG
                     STQGCTKTGARCVTHDLWE"
BASE COUNT          621 a          968 c         1067 g          597 t
ORIGIN      
        1 gcccccgccg cggtcttgcc catcttggcg cccgaagcgg tggtgatcag cggcgtggtc
       61 aggccgaaca gctgggcgct ttccatgcgc cgccccagtt ctatcccaga gacgatgttg
      121 ccccactggt cggagccgga cgattgcagc ttgcaggcat agcgcttgtg cagctcaaca
      181 aagtcatagg cctgcatgat ggaatagttg aattccagga aagacagcgg ctggtcgcgg
      241 tccagccgca gcttgacgct gtccatggtc agcatgcggt tgaccgaaaa atggcgacca
      301 acctcgcgca ggaaggaaat atattcgagc ttgtccagcc attcggcatt gtccaccagg
      361 atggcgtcgc tgggcccgtc accgaatttc agcaggtgcc ggatactggc caggatgctc
      421 tgcttgttgg cttcgatttg cgcattggtc agaagctggc gagtttcgtc cttgccggaa
      481 ggatcgccca ccttggtggt gccgccgccc atcaagagaa tgggcttgtg gccggcctgc
      541 tgcaaccggc gcagggtcat cagctgcacc agattgccga catgcaaact gtcggccgtg
      601 cagtcaaagc cgatataggc ggtgacgcat tccttggcga acagcgcgtc cagctcggcc
      661 ggggccgagc aatcgtaata ggccccgcgc gcggtaaagg tgcgaaggaa ttcggactgg
      721 aattgcggcg cgggcggcat ggtatagact cgttacgata ggcaggcggc atagcacgaa
      781 tggacgaaat cttgaaagtc atcggcctga tgagcggcac ttcgctggac gggatcgacg
      841 ccgccctgct ggagagcgac ggcgaggatg tggtgcgccc cggccccagc ctgaccgtgc
      901 cctatgacaa agacacccgc gccctgttgc gcagcagcct ggacgccgcc cgtgacgtgg
      961 cgcaaggcgc tcccgtgccg cattccatcc gtgaggccga gcgagtcctg accttggccc
     1021 atgccaaagc ggtgacggcc ttgctggaca aggcggggct ggcggcggac caagtgtcgc
     1081 tgatcggctt tcacgggcag accatcctgc accgccccga acggcattgg acctggcaga
     1141 tcggcgatgg cgccttgctg gcgcggctca ccggaatcga cgtcatcaat gattttcgca
     1201 gcgccgatgt gaaagccggc gggcagggcg cgcccttgat gccgctctat cacgcggctc
     1261 tggcgcgcaa atcaggtcgg gcggagccat tggtggtggt gaacatcggc ggggttgccc
     1321 aggtcactta tataaagggc gacttggtgc tggctttcga caccggcccg ggcaacgccc
     1381 cgatcgacga ttggatgcac cggcacagcg gcaagcccgt ggatgaagac ggcgctttcg
     1441 cggccaccgg caaggtcaat gacagtgcct tggccaaaat gctggatcac gcctatttcg
     1501 atcgcgcgcc gcccaagtcg ctggaccgca tggatttcgg gatggcggcg gtggaagggc
     1561 tatcgccgga agacggcgcc gccaccctga cggcctttac cgccgcatcg ctggcccagg
     1621 cgcgggcgta ttttcccgag cctgctgcca attggatcgt cagcggcggc ggccgccaca
     1681 acaggacgtg aaggcgcggg tgaatgcgcc ggtgattgcg gcggaggatg cgggctggga
     1741 cggcgatgcg ctggaggcgg aaggctttgc ctatctggcg gtgcgcgcaa aaaaaggctt
     1801 gccgctgtcc ttgccgacca cgacgggagt caaagaaccg atgaccggcg gaaaatactg
     1861 gaagacttaa cggctttttt tgaaactggg ccacccgcat acgcgggtgg ctgcgagaag
     1921 ggctaacggc ttttttaact gggccacccg cataaagcgg gtggctgcga gaagggctaa
     1981 cgcccttctc ttggcttgct catcatgttc gacacatagc ctttcaccgt ctccaccacc
     2041 tcttcctcgc gtttgtcgaa gaagtggttg gcgccgtcga tcttgtcata ggtgatcttg
     2101 atgcccttct gggcggtgag gcggtcgacc agcttctgca catcgggctc gggcaccaca
     2161 ttgtccttgg taccgtgcac gatcagcccg ctggccgggc agggcgccag gaaggcgaag
     2221 tcatacatgc tggcgggcgg ggcgatggag acgaagccgg tgatctccgg ccggcgcatc
     2281 aaaagctgca tgccgatcca ggcgccgaag ctgatgccgc acacccagac attggaggga
     2341 ttgggataga gcgtgttcat ccagtccagc acggcggcag cgtcggaaag ttcccccgcg
     2401 ccattgtcga agctgccctg gctgcggccg acgccgcgaa aattgaagcg caccgtggtg
     2461 cagcccaggc cgtggaacat gtgaaagagg tcatagacca gcgggttgtt catggtgccg
     2521 ccgaactggg gatgggggtg cagcaccagt gccatggggg cgccgggatt cttttgccgc
     2581 tgatagcgcg cttcgatgcg ccccgccgag ccgggcagaa tgatatcggg catggatttt
     2641 cctgttttct caaccgctca tccgcaagcg aaaaactcgg tctttaggag gtgcgagccc
     2701 cttaaaaatc cgtgaaattt cagatgctta caggatgacc caccaaagag acgcgaatac
     2761 ttgaccaaat tactcgggaa ctatatatcc cgggccgtca ggcgttgcct tctggcttgc
     2821 gccctctcta caccggcagg gggggcaaaa agcaaggaaa aacgcctctt taccgaaggg
     2881 aacctgtgat gcggctgagc accaaaggac gttatgcggt gatggcgatg gccgacttgg
     2941 ccgggaacgc cgtcaatgcc cagatcccgg gggatccccg ccccgtggcg ctggccgata
     3001 tcgccgcccg ccaggatatt tcgctgtcct atctggaaca gctgttcgcc aagctcaggc
     3061 gcggcggatt ggtgacttcg gtgcgcgggc cgggcggcgg ttatcgcctg tcgcgtccgt
     3121 ccggtgagct gcgcatcgcc gacatcattc tggcggtgga cgaacccatt gccgccaccc
     3181 gctgcaagac cggcagcacc cagggctgca ccaagaccgg ggcgcgctgc gtcacccacg
     3241 atctgtggga aga
//
LOCUS       DATMDK010000222         2141 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1014575,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000222 DATMDK010000000
VERSION     DATMDK010000222.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2141)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2141)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2141
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1014575"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..327
                     /locus_tag="VNN98_04295"
     CDS             <1..327
                     /locus_tag="VNN98_04295"
                     /inference="COORDINATES: protein motif:HMM:NF016252.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0042597 - periplasmic space [Evidence
                     IEA];
                     GO_process: GO:0016051 - carbohydrate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glucan biosynthesis protein"
                     /protein_id="HWM61345.1"
                     /translation="TIAKVVATRLGRGGVPGQTPWPHDKHKFVVDFTGGPLTQMQQRF
                     DVTPVAGASRGKIDNAYVIKVVGTDRWRALFDLQLDGAAPVDLRLYLKLGTKTLSETW
                     LYQYFP"
     gene            complement(328..969)
                     /locus_tag="VNN98_04300"
     CDS             complement(328..969)
                     /locus_tag="VNN98_04300"
                     /inference="COORDINATES: protein motif:HMM:NF042726.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6655 family protein"
                     /protein_id="HWM61346.1"
                     /translation="MRKIAALVLLGAALLAGCTTARSTAPLRTASEQLLISAAADRAA
                     AQLTLGIPKGTRVFVDTRYFQGYDDGYAIAAIRTQMLKNGLMVVDDRAQAEAVVMVSS
                     GALSTDQKSLLIGLPQLTVPYIPVGNSVTVPEIALFKQAEEKGVAKFVATGYDAKTGK
                     LLATTDPRYGFAHNTNHTVLLFFSWATGDVIPPGVDQHSLSFQTLTSMLPGGN"
     gene            complement(1552..>2141)
                     /locus_tag="VNN98_04305"
     CDS             complement(1552..>2141)
                     /locus_tag="VNN98_04305"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HWM61347.1"
                     /translation="LKQLCTGLSPGSGDATVLEADNGAAALALQKSEGPQLTVLDLNM
                     PGLSGLELLRQLLEADPGARILVFSMHGEPVYAAKALEIGAKGYVSKNASPEELRMAL
                     GRIASGLTYVEGEIAQALAALPGEQRQQLSERDLEILRLLGEGRSFTEIAASLGLGYK
                     TVANTTTSIKSKLGVARTADLIRLSVEMGIGRQVP"
BASE COUNT          410 a          657 c          650 g          424 t
ORIGIN      
        1 actatcgcca aggtggtggc gacacggctg ggacgcggcg gcgtgccggg ccagactccc
       61 tggccgcacg acaagcacaa gttcgtggtg gacttcaccg gcggaccgct gacccagatg
      121 cagcagcgtt tcgacgtgac gccggtggcg ggggcctcgc gcggcaagat cgacaacgcc
      181 tatgtcatca aggtggtggg caccgaccgc tggcgggcgc tgttcgatct gcaactggac
      241 ggcgctgcgc cggtggacct gcggctatac ctcaagctgg gcaccaagac gctcagcgag
      301 acctggctgt atcaatactt tccgtagcta attgccgcct ggcagcatgc tggtcagagt
      361 ttggaacgac agcgaatgct ggtccacgcc gggcggaatc acatcgcccg ttgcccagga
      421 gaagaacaac aacacggtat ggttggtatt gtgggcgaag ccgtagcgcg ggtccgtggt
      481 ggccagcagc ttgccggtct tggcgtcata accggtggcg acgaacttgg cgacgccctt
      541 ctcttcggcc tgcttgaaca gcgcgatttc cggcacggtc acagaattgc ccaccgggat
      601 atagggcacg gtcagttgcg gcaggccgat cagcagcgat ttctggtcgg tggacagcgc
      661 ccccgacgac accatcacca ccgcttcggc ctgggcgcgg tcgtccacca ccatcagccc
      721 gttcttcaac atctgggtgc ggatggcggc aatggcatag ccgtcgtcat agccctggaa
      781 atagcgggta tccacaaaga cgcgggtgcc cttgggaatg cccagtgtca gttgcgcggc
      841 ggcgcgatca gcggctgcgg aaatcagcag ttgctcgctg gcggtgcgca gcggcgcggt
      901 cgagcgggcg gtggtgcagc cagccaaaag ggcggcgccc agcaggacga gagcggcaat
      961 tttgcgcatg gcgactcata gatcagccct cgccgcagga aaaccctatt tatccttcaa
     1021 attattgcaa tgtggaactc gagacggaac tcgccgtgga actcgccgcc ggcgttacca
     1081 caccccaaaa gaaaacaggc ccagccggat tgccgacggg acctgcttca ctcttgtatc
     1141 cgacatcaag ccggactgtt taatatgggc taagcccatt gttcagtttc aattgtgggc
     1201 ggaggtccgg ggctttaatc cgttccttgg ctccgcatta ggcgaagccc ggcttacttt
     1261 ccggtggagt cacttccatt taggaacctc ctgttgcggg tttcacctac cgcgatctta
     1321 agattgcgtc tcgcgcgaca ttctctggcg ccaggaaatc cggtctccac cggatcgatc
     1381 gcgaatttgt cgacgcattc gcgtctttgg catcgcgcgt tgggcgcttt gggaagtaac
     1441 tgcggcaatc gcaatctttt ctctcggcac caaaaccctg cgcctgaaaa accacggggt
     1501 caacacgaaa ccgtcatcga aatcatttgt gaagcggtgc agggcagcgg atcagggaac
     1561 ttgacggcca attcccattt caactgaaag ccttatcaga tcggcggtac gcgccacgcc
     1621 cagcttggat tttatcgagg tcgtggtgtt ggccaccgtc ttgtagccta gccccagact
     1681 ggcggcgatt tccgtgaagc tgcggccttc acccagcagg cgcagtattt cgaggtcacg
     1741 ttcgctgagc tgctggcgct gctcgccggg cagcgccgca agggcttgcg caatttcgcc
     1801 ttcgacatag gtcaggcccg aggcgatgcg ccccagcgcc atgcgcaatt cctccggcga
     1861 ggcgtttttg ctgacatagc ccttggcacc gatttccagc gccttggcgg catagaccgg
     1921 ctcgccatgc attgaaaata ccaggatgcg cgcgccgggg tcggcctcca gcaactggcg
     1981 cagcagttcc agtccgctca accccggcat gttgagatcc agtactgtca attgcgggcc
     2041 ttcgcttttc tgcagggcca gcgccgccgc gccattgtca gcttccagaa ccgtcgcgtc
     2101 cccacttccc ggagacaagc cggtacacaa ctgcttcagg c
//
LOCUS       DATMDK010000223         2642 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_346114,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000223 DATMDK010000000
VERSION     DATMDK010000223.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2642)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2642)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2642
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_346114"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..503)
                     /locus_tag="VNN98_04310"
     CDS             complement(<1..503)
                     /locus_tag="VNN98_04310"
                     /inference="COORDINATES: protein motif:HMM:NF012407.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016616 - oxidoreductase activity, acting
                     on the CH-OH group of donors, NAD or NADP as acceptor
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="isocitrate/isopropylmalate family dehydrogenase"
                     /protein_id="HWM61348.1"
                     /translation="MNEYKLLLLPGDGIGPEVLDATMRVVGWYGKKGLPYKTEEALLG
                     GAAIDATGRPDPDETFVKAIAADAVLMGSVGGPKWDGLPFEKRAERGLLRVRKDMGVY
                     ANLRPALCFDALKDASTLKPEIVSGLDILIVRELMGGVYFGEPKETTTLPDGQKRAVD
                     TGVYTTS"
     gene            complement(586..1191)
                     /gene="leuD"
                     /locus_tag="VNN98_04315"
     CDS             complement(586..1191)
                     /gene="leuD"
                     /locus_tag="VNN98_04315"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: protein motif:HMM:NF002458.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009316 - 3-isopropylmalate dehydratase
                     complex [Evidence IEA];
                     GO_function: GO:0003861 - 3-isopropylmalate dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0009098 - leucine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase small subunit"
                     /protein_id="HWM61349.1"
                     /translation="MEPFNKLEGVAAPLNMINVDTDMIIPKQYLKTIHRTGLGKALFD
                     EMRFNPDGSEKPDFVLNKPAYRHAKILVAGDNFGCGSSREHAPWALLDFGIRCVIATS
                     FADIFYGNCFKNGILPIALPQEEVNKLMDDAERGANAVISIDLEAQEIRGPDGGMIKF
                     EVDAFRKQVLLNGWDDIALTLRDEPKISTFEKNQQTQTPWL"
     gene            complement(1261..2541)
                     /locus_tag="VNN98_04320"
     CDS             complement(1261..2541)
                     /locus_tag="VNN98_04320"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HWM61350.1"
                     /translation="MSTVRPTRVRYTVLALVVLVYFITYLDRVLLSNALPTIQKQFGF
                     SIGTLGLVLGCYNWAYALFQIPGGWFGDRAGPRIALACVVVWWSVFTFVTGLSTSVTM
                     LMACLFLIGMGEAGAFPISNRALSRWMLPTERGLAQGTTHAGSRLAGAAAPVLVATLI
                     GLYGWHAPFFLFAFVGIGWAGLWFWYYRDVPGEHAGVNEAERDKIAAALGTAAKKRQP
                     IPWALILSSRQMWTLAAMYFCYGYCLNMFLAWYPKYLDSARGYTLAEMGFFASLPLAA
                     GVVGDICGGLISDAIIHRTGRIKFARQSVAIAGFLLAAVCIPLAVAEPGRYLSAVLFG
                     AAVFGLELVVGNAWAVTLDIGGNFAGSCSAVMNTFGNIGGAIVATATGFIVKAYGWNA
                     AFYAVAALAVVGALLFTQIDAGRKLAPDSTSPVV"
BASE COUNT          552 a          833 c          797 g          460 t
ORIGIN      
        1 tcgctggtgg tgtagacgcc ggtatcgacg gcgcgcttct ggccgtccgg caaagtcgtg
       61 gtttccttgg gctcgccgaa ataaaccccg cccatcaatt cccgcacgat caggatatcc
      121 aggccagaga cgatttccgg cttcagggtc gaggcatcct tcagcgcgtc aaaacacagc
      181 gccggacgca gattggcata gacgcccata tccttgcgca cccgcagcag cccgcgctcg
      241 gcgcgttttt cgaacggcaa gccgtcccat ttggggccgc ccaccgaacc catcagcacc
      301 gcgtcggcgg cgatcgcctt gacaaacgtc tcatcgggat cgggccggcc ggtggcgtcg
      361 atcgcggcgc cgcccaacag tgcttcctcg gtcttgtagg gcaagccctt tttgccatac
      421 cagccgacca cgcgcatggt ggcgtccaga acttcaggac cgataccgtc gcccggcagc
      481 agaagcagct tgtattcatt catcggagga aactctttat tttggtcgct ccggctctcg
      541 ccgacgctgc gttatttttg gtcgctccgg ctcgcgccta cgctcctaaa gccagggcgt
      601 ttgggtttgc tggtttttct cgaaggtgga aatcttgggt tcgtcgcgca aggtcagggc
      661 gatatcgtcc cagccattca gcagcacctg cttgcggaag gcgtccactt cgaacttgat
      721 catgccgccg tcgggaccgc ggatttcctg cgcctccagg tcgatggaga tgacggcatt
      781 ggcgccgcgc tcggcatcgt ccatcagctt gttgacctct tcctgcggca gtgcgatcgg
      841 caggatgccg ttcttgaaac agttgccata gaagatgtcg gcgaagctgg tggcgatcac
      901 gcagcggatg ccgaaatcca gcagcgccca gggggcatgc tcgcggctgg agccgcagcc
      961 gaaattgtcc cccgccacca aaatcttggc atggcgatag gccggcttgt tcagcacaaa
     1021 gtccggcttc tcactgccgt cagggttgaa gcgcatctca tcgaacagcg ccttgcccaa
     1081 tccggtgcga tggatggtct tcagatactg cttggggatg atcatgtcgg tatcgacatt
     1141 gatcatgttc aggggggcgg cgacgccctc aagcttgttg aatggttcca tggcggcggg
     1201 accataccgg cttttaggga aaagtgaacc ccggctttaa tctttgaaac tgcggcaaaa
     1261 tcagaccacc ggactggtgc tgtccggcgc cagcttgcgc ccggcatcga tctgggtgaa
     1321 cagcagcgcg cccaccacag ccagggcggc cacagcataa aatgccgcgt tccagccata
     1381 ggctttgacg atgaaacccg tcgccgtcgc cacaatggct ccgccgatat tgccgaaggt
     1441 attcatcacc gccgagcagg agccggcgaa attgccgccg atgtccaagg tcacggccca
     1501 ggcattgccc accaccagtt ccagcccgaa caccgccgcg ccgaacagga cggcgctgag
     1561 atagcggccg ggctcggcca ccgccagcgg tatgcagacc gccgccagca gaaatccggc
     1621 aatggccacg ctttggcggg cgaatttgat gcgtccggtg cggtgaatga tggcgtcgga
     1681 gatcaggccg ccgcaaatgt cgcccaccac ccccgccgcc agcggcagac tggcgaagaa
     1741 tcccatctcg gccagggtat agccgcgggc gctgtcgaga tatttgggat accaggccag
     1801 gaacatgttg agacaatagc cgtagcagaa atacatcgcg gccaaggtcc acatctggcg
     1861 gctgctgagg atcaaggccc agggaatcgg ctggcgtttt tttgcggcgg tgcccagcgc
     1921 ggcggcgatc ttgtcgcgct ccgcttcgtt gacgccggca tgctcgccgg gcacgtcgcg
     1981 gtaataccag aaccacagcc ccgcccagcc gataccgaca aaggcaaaca ggaagaaggg
     2041 cgcgtgccag ccgtaaagcc cgatcagcgt ggccaccagc accggcgcgg cagcgccggc
     2101 caagcgcgaa ccggcatggg tggtaccctg agcaagaccg cgctcggtcg gcagcatcca
     2161 gcgcgacaaa gcgcggttgg aaatcggaaa ggccccagcc tcacccatgc cgatcagaaa
     2221 caggcaggcc atcaacatcg tcaccgacgt ggaaagaccg gtgacaaaag tgaaaaccga
     2281 ccaccacacc accacacagg ccagcgcgat gcgcgggccg gcacgatcgc cgaaccagcc
     2341 gccgggaatc tggaacagcg cataggccca attgtaacag cccagcacca ggcccaacgt
     2401 gccgatggaa aagccgaact gcttctggat ggtgggcagc gcgttggaaa gcagcacccg
     2461 gtccagatag gtaatgaaat aaaccagcac caccaaggcc agcaccgtgt aacgcacgcg
     2521 agtgggacgg acagtggaca taagacttcc ctttaacgac tccgtgcgtc tgcgcggatg
     2581 cgtttatttc cggtcacgga gcgtgacaat tcaatatggc atgcccggcg gcgtggtcga
     2641 ag
//
LOCUS       DATMDK010000224         3505 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_792560,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000224 DATMDK010000000
VERSION     DATMDK010000224.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3505)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3505)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3505
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_792560"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..428
                     /locus_tag="VNN98_04325"
     CDS             <1..428
                     /locus_tag="VNN98_04325"
                     /inference="COORDINATES: protein motif:HMM:NF013646.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0071949 - FAD binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="FAD-dependent monooxygenase"
                     /protein_id="HWM61351.1"
                     /translation="FDQVKLLTVTVDRLSKWARPGLLCIGDAAHAMSPIGGVGINLAI
                     QDAVATANILGPVLQKGVPGLRDLKKVQKRREFPTKVIQAFQVAAQNFMLAPTLAAVQ
                     MPEAPLFVKILNAWPWARQFPARLIGMGVRPEHVRLRKC"
     gene            516..641
                     /locus_tag="VNN98_04330"
     CDS             516..641
                     /locus_tag="VNN98_04330"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61352.1"
                     /translation="MALVHHDRPAPETNRCATMFCLTWLGFFVAIGVFTYLVSLI"
     gene            complement(652..1080)
                     /locus_tag="VNN98_04335"
     CDS             complement(652..1080)
                     /locus_tag="VNN98_04335"
                     /inference="COORDINATES: protein motif:HMM:NF019013.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ester cyclase"
                     /protein_id="HWM61353.1"
                     /translation="MPDSRNLVERFYNDIWNRQDFAAAEEILTPDFRFRGSLGSETIG
                     IPAFLAYAQSIHAALADYRCTIEEMVADDIHIAARMTFTGLHRGRLFGVEATGRTVAW
                     AGAAFFQVAQMRTVSLWVLGDVEGLKQQLGAARSAPFQAG"
     gene            complement(1256..2659)
                     /gene="lpdA"
                     /locus_tag="VNN98_04340"
     CDS             complement(1256..2659)
                     /gene="lpdA"
                     /locus_tag="VNN98_04340"
                     /EC_number="1.8.1.4"
                     /inference="COORDINATES: protein motif:HMM:TIGR01350.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004148 - dihydrolipoyl dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA];
                     GO_process: GO:0045454 - cell redox homeostasis [Evidence
                     IEA];
                     GO_process: GO:0051068 - dihydrolipoamide metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrolipoyl dehydrogenase"
                     /protein_id="HWM61354.1"
                     /translation="MADSFDAIVIGGGPGGYNAAIRLGQLGLSSACIDKRGSFGGTCL
                     NIGCIPSKALLHASERFHEAQTDFAKLGIKAKVDLDLPAMMAQKTKVVGELTKGVEFL
                     LKKAKSEAIVGEARITAPGKVEVKLADGKTRSLTCKHIIIATGSDVAPLPGVTLDEKQ
                     IVSSTGAIALTSVPKKLLVVGAGVIGLELGSVWKRLGADVTVVEFLDRVTPGIDLEVS
                     KAFQRVLTKQGFTFLLSTKVTGVEKKAGALKVTVEPAAGGDKQVLDADVMLVAIGRIP
                     YTTNLGLAEAGVAMDKRGRVITDNHYRTNVPGIYAVGDCREGPMLAHKAEDEAVACAE
                     LIAGKTGHVNYDAIPSVVYTFPEVATVGKSEEELKAAGIAYKVGKFPFTANARAKTIM
                     AADGLVKILADAKTDKVLGCAILGPEAGNLIAEVVLAMEFGASSEDIARTCHSHPTLS
                     EAVRQAAMGVEGWTMQM"
     gene            complement(2925..>3505)
                     /locus_tag="VNN98_04345"
     CDS             complement(2925..>3505)
                     /locus_tag="VNN98_04345"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: protein motif:HMM:NF019205.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="sensor histidine kinase"
                     /protein_id="HWM61355.1"
                     /translation="NNLQIVMSLLSIQANQVKDAVAKDALLQAQTRINALALVHRILN
                     ELEDQSTLDIRQLLEELSHQIAGGMSNDKVRVEVNVPSRVVTGSTAVALALFTVEALT
                     NIFKHAFPDERRGVIQVNMTPEPDGKLKLAIADNGMGFADGTGKSVGSRLIKTFGLQL
                     GGVSSVHSEPGNGTVVDLIFPDPDLAPEEAVV"
BASE COUNT          637 a         1120 c         1061 g          687 t
ORIGIN      
        1 atttcgatca ggtcaagctt ttgaccgtga cggtggaccg cttgagcaaa tgggcgcgtc
       61 cggggctgct gtgcatcggc gatgcggccc atgccatgtc gcccattggc ggggtaggca
      121 tcaacctcgc catccaggac gccgtggcca cggccaatat cctggggccc gtgctgcaaa
      181 agggcgtgcc cggtttgcgc gacctgaaga aagtgcagaa gcggcgcgaa tttcccacca
      241 aagtgattca ggccttccag gttgcggcac agaatttcat gctggcgccc accttggcgg
      301 cggtgcagat gcccgaggcc ccgctgtttg tcaaaatact gaacgcctgg ccttgggcaa
      361 ggcagtttcc cgcgcgtctg atcggcatgg gcgtgcggcc ggaacatgtg cggctgcgaa
      421 agtgctgaac cgattgctgc gccgcggcat cgaaagtcca ttctccgtat gcggaaaagg
      481 gactagcctt gcgtcaatca atgcgggagc cgcccatggc actggttcac cacgatcgtc
      541 ctgcccccga aaccaatcgc tgcgccacca tgttctgtct gacatggctg ggatttttcg
      601 tggcgatcgg tgtgttcact tacctggtca gcctgatcta gaggcaccag atcaaccggc
      661 ttggaagggt gcgctgcgcg ccgcgcccag ttgttgtttc aaaccctcga catcgcccag
      721 cacccagagc gagacagtcc gcatctgcgc cacctggaag aaagcggcac cggcccaagc
      781 cacggtccgc cccgttgctt ccacgccgaa caggcgtcca cgatgcagac cggtaaacgt
      841 catacgcgcc gcgatgtgaa tgtcgtcggc caccatctcc tcgatggtgc aacgatagtc
      901 cgccagcgcg gcgtgaatgg actgggcata ggcaaggaag gcgggaatgc cgatggtttc
      961 tgaaccgagc gaaccgcgga agcggaaatc gggcgtcaga atttcttccg ccgcggcgaa
     1021 atcctgccgg ttccagatgt cgttatagaa acgttcgacg agatttcggc tgtcaggcat
     1081 gcgggccccc tggatcgttc atacgctgtc gctacgaact ccctcgccgc tggtcgcggc
     1141 tcgcctgccg ctcgcttaag ctcgcggcgt tcacctgctt tcgcatgtct actggacatg
     1201 ctcacgcctg acggcgccgc aggttcacgg gatgaattcg cgctgtcgcg cgaattcaca
     1261 tctgcatcgt ccagccttcg acacccatcg ccgcctgccg aaccgcttcg ctgagagtcg
     1321 gatgcgaatg gcaggtgcgg gcgatgtctt ccgacgaggc gccgaactcc atcgccagca
     1381 ccacttcggc gatcaggttg cccgcttccg gcccgagaat ggcgcagccc agcaccttgt
     1441 cggtcttggc gtcggccagg atcttcacca ggccgtcggc cgccatgatg gtcttggccc
     1501 gcgcattggc ggtgaaggga aacttgccaa ccttgtaggc gatgcccgcc gccttgagct
     1561 cttcttcgga tttgccgaca gtggcgactt ccggaaaagt atagaccacc gaaggaatcg
     1621 catcataatt cacatgcccg gtcttgccgg cgatcagctc ggcgcaggcc acggcttcgt
     1681 cttcggcctt gtgcgccagc atgggacctt cgcggcaatc gcccaccgca taaatgcccg
     1741 gcacattggt gcgatagtga ttgtcggtga tgacccggcc acgcttgtcc atcgccacac
     1801 ccgcttcggc caggcccaga ttggtggtgt agggaatgcg cccgatggcg accagcatca
     1861 catcagcatc cagcacctgt ttgtcgccgc ccgcggccgg ttcgaccgtg accttgagcg
     1921 cgccggcctt tttctccaca cccgtgacct tggtggacag aaggaaggta aagccttgct
     1981 tggtcaacac gcgctgaaag gccttgctga cttccaggtc gatgcccggg gtgacgcggt
     2041 cgaggaattc caccaccgtc acgtcggcgc ccagccgttt ccacaccgaa cccagttcca
     2101 gcccgatgac gccggcgccc accaccagca atttcttggg caccgaggtc agcgcaatcg
     2161 ccccggtcga ggatacgatc tgcttttcat ccagggtgac gccgggcagc ggggcgacat
     2221 cggagccggt ggcgatgatg atgtgtttgc aagtcaagct gcgggtcttg ccgtccgcca
     2281 atttcacttc gactttaccg ggcgctgtga tgcgcgcttc gccgacaatg gcctcgctct
     2341 tggccttttt gagcaggaac tccacgccct tggtcagctc gccgaccacc ttggttttct
     2401 gcgccatcat ggcgggcagg tcgagatcga ccttggcctt gatgcccagc ttggcgaaat
     2461 cggtctgggc ctcgtggaag cgctcggagg catgcagcag cgccttggag ggaatgcagc
     2521 cgatgttcag gcaggtgccg ccgaagctgc cgcgcttgtc gatgcaggcg ctggaaaggc
     2581 ccagctgccc cagccggatc gccgcattat agccgccggg gccgcccccg atcacgattg
     2641 cgtcgaaact gtccgccatg gtcctgctca cttgatactc gggccggaac ataaccatcc
     2701 ggcgcggggc gaaaacagcc caaaacgcat atcagtgcgg cgattccctg cgctagcgcc
     2761 gcatttcgcg gcgcgaccct ccacagatcg tgcccctcct ccccttcctg cgcgaagcgg
     2821 tccatagcga cagcgtatgg acgaaaggga ggtggcggca gcgaaggtga gaagcgccag
     2881 cgtacgaacg cggagccgac ctgagctgcc gacggagggg ttcatcaaac aacagcttct
     2941 tcgggggcca aatcggggtc ggggaagatc aggtccacca ccgtgccgtt gcccggctcg
     3001 gaatgaacac tggaaacacc ccccagttgc aacccgaaag tcttgatcag gcggctgccc
     3061 acgctcttgc ccgtgccatc ggcaaagccc atgccgttat cggcgatcgc cagcttcagc
     3121 ttgccgtccg gctcgggtgt catattgacc tggatcacgc cccgtctttc gtcgggaaag
     3181 gcgtgcttga agatattggt cagggcctcg accgtgaaca gggccagcgc caccgccgtg
     3241 ctgcccgtca ccacccggct gggcacattg acctcgaccc gcaccttgtc gttgctcatg
     3301 ccgccggcga tctggtggct gagttcttcc aacagctggc ggatgtccag agtgctctgg
     3361 tcttccagct cgttgaggat gcggtgtacc agcgccaagg cgttgatacg ggtctgggcc
     3421 tgcaagagcg catccttggc gacggcgtct ttcacttgat tggcctgaat ggagagcaga
     3481 ctcattacga tctgcagatt gttct
//
LOCUS       DATMDK010000225         3772 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_95357,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000225 DATMDK010000000
VERSION     DATMDK010000225.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3772)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3772)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3772
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_95357"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..610)
                     /locus_tag="VNN98_04350"
     CDS             complement(<1..610)
                     /locus_tag="VNN98_04350"
                     /inference="COORDINATES: protein motif:HMM:NF013871.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61356.1"
                     /translation="MTAPETLAVMAALGEARFVGGAVRDALLGAGVVDIDIAVPMPPS
                     EALARLSAKGIKVVETGLEHGTVTAIAGTHAFEITSLRRDVETDGRHAKVAFTDDWAE
                     DAARRDFTINALYASLSGEIFDYATGVEDLIAGKVRFMGDARKRIAEDYLRILRLFRF
                     HAWYGKGEIDAEGLRAAAEAKDKLKTLSAERVAKELLRLLEAG"
     gene            complement(824..1426)
                     /locus_tag="VNN98_04355"
     CDS             complement(824..1426)
                     /locus_tag="VNN98_04355"
                     /inference="COORDINATES: protein motif:HMM:NF007980.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0010945 - coenzyme A diphosphatase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA pyrophosphatase"
                     /protein_id="HWM61357.1"
                     /translation="MSLAEQLRARLLQQPPDVTEHDDYEAGPRPAGFGAVKAAVLLPV
                     IERNQPMLLFTRRTESLARHSGQVSFPGGRSETGDLTPVETALRETFEETGIAPAFVS
                     VAGYLDRYLTGTGFDIQPVVGLLADGFALAPDPREVADVFEVPLAFLCDPANRRRETR
                     EIGGRQRSFFAFTYESHEIWGATAAIIVNLVQRLDAINES"
     gene            1597..2598
                     /locus_tag="VNN98_04360"
     CDS             1597..2598
                     /locus_tag="VNN98_04360"
                     /inference="COORDINATES: protein motif:HMM:NF040105.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MoxR family ATPase"
                     /protein_id="HWM61358.1"
                     /translation="MNKLDIQDEREAPRRLSASAETFAKVRAGLNAVIFGQDEVIEQT
                     LVTLLAGGHGLLIGVPGLAKTKLVDTLGTVMGLDTSRVQFTPDLMPADITGSEVMEES
                     ISGERAFRFIRGPVFTQLLMADEINRASPRTQSALLQAMQEKHVTVAGARHDLPRLFH
                     VLATQNPLEQEGTYPLPEAQLDRFLLQIDVGYPNLEAERRMLLATTMGEEKTAIRVCG
                     PDDLLDAQTLVRRIPVGEKVMESILSLVRAARPDSDHDSGVRSQIAWGPGPRASQALM
                     LAARARALLDGRFAPSTDDVVALAGPVLRHRMALNFSARAEGATTASVIERLCASLF"
     gene            2595..3458
                     /locus_tag="VNN98_04365"
     CDS             2595..3458
                     /locus_tag="VNN98_04365"
                     /inference="COORDINATES: protein motif:HMM:NF013998.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF58 domain-containing protein"
                     /protein_id="HWM61359.1"
                     /translation="MSQFSALQHEADGLSAGLPPLMVEADHLAASVSLGVHGRRRAGM
                     GESFWQFRRYASPDSSSAIDWRQSAKSQHIFVREREWEAAQTVWFWRDASANMSFQSG
                     PKDNGVSKRARADLLLLALASLLVRGGERVGFVGMDGAAAASRLALTRIGRALIAPGT
                     EALPPQAPFARGNQLVWFSDFLDETVFEAMRRLSQRGVEGHLVRIIDPAEEDFPYSGR
                     TRFESPRGESGEIFGRAERVRGAYRARFVAHGEQIAQAAAKLGWTCTVHRTDHAPQAS
                     LIALHAAIGGV"
     gene            3436..>3772
                     /locus_tag="VNN98_04370"
     CDS             3436..>3772
                     /locus_tag="VNN98_04370"
                     /inference="COORDINATES: protein motif:HMM:TIGR02226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BatA domain-containing protein"
                     /protein_id="HWM61360.1"
                     /translation="MPPLAASDAVLFGFPLSFGTPLILAALLVLPLLWWLLRVTPPLP
                     RRTPFPPLRLLRGLEDEEQTPAATPWWLLLLRLAAAALLIVALADPLLGRSPKLATNG
                     PLVLVVDNGW"
BASE COUNT          616 a         1271 c         1205 g          680 t
ORIGIN      
        1 tgcccgcttc cagcaggcgc agcaattcct tggccacccg ctccgccgac agagttttca
       61 atttgtcctt ggcctcggcg gcggcgcgca ggccttcggc atcgatctcg cccttgccgt
      121 accaggcatg gaagcggaac agccgcaata tccgcaagta atcttccgcg atgcgctttc
      181 gcgcatcgcc catgaagcgc accttgccgg cgatcaggtc ttcgaccccg gtggcgtaat
      241 cgaaaatttc gcccgacaac gaggcataga gcgcattgat ggtgaagtcg cgccgcgccg
      301 cgtcttcggc ccagtcgtcg gtgaaggcga ccttggcatg gcggccgtca gtctccacgt
      361 cccggcgcag tgaagtaatc tcaaaggcgt gggtccccgc gatagccgtg acagtgccgt
      421 gctccagccc cgtctccacc accttgatgc ccttggcgct gagccgcgcc agcgcctcgc
      481 tgggcggcat gggcacggcg atatcgatgt ccaccacgcc tgcgcccagc aaggcatcgc
      541 gcacggcgcc gcccacaaag cgtgcctctc ccagcgccgc catcaccgcc aaggtctccg
      601 gcgccgtcat ccaaccatgt tgggaagggt caattcgcat agcggcgccg attcttttta
      661 ttgtcgcgca aaatggcccg aagcacctgt ctgtatatac caccacttat gcttggccat
      721 tttgcacgac gggggccgcc gacaaaacgc gcgtcaccca gcgccgctat cacctgaatg
      781 gtttccggcg cggtcatcca gccatgttgg gacggatcaa ttctcatgat tcatttatag
      841 catctaatcg ctgcaccaga ttgacgatga tggcggcggt ggcgccccag atttcatggc
      901 tctcataggt gaaagcaaaa aagctgcgct gacgtccccc gatctcgcgg gtctcgcgcc
      961 gccggttggc gggatcgcac aggaaagcca gcggcacctc gaacacatcc gctacttcgc
     1021 gcggatcggg cgccagggcg aagccgtccg ccagcaggcc gaccaccggc tggatgtcga
     1081 agccggtgcc cgtgagatag cggtcgaggt agcccgccac actgacgaaa gccggggcga
     1141 tgccggtctc ctcgaaggtc tcgcgcagcg ctgtctccac cggcgtcaag tcgcctgtct
     1201 cgctgcgccc gccggggaaa ctcacctggc cgctgtgccg cgccaggctt tcggtgcggc
     1261 gggtgaacaa caacataggt tggttgcgct caatcaccgg cagcagcacc gccgccttca
     1321 ctgcgccgaa accggcggga cggggaccgg cctcgtaatc gtcatgctcg gtgacatcgg
     1381 gcggctgctg cagcagccgg gcgcgcaatt gttccgccag gctcatggtt ccggccggcg
     1441 caggattggg aatttttcgt ttgccgtcat gaggccacaa ttcgcggttt tctgttggat
     1501 attaaggcta tctatggggt tgcacggttc acgcccaacg gtgcaacata aagcccaatt
     1561 ccggcaagca cccactcccg gtaacatcag gcccgcatga acaagttgga catacaggac
     1621 gagcgcgaag cccccaggcg gctgtcggcc agcgccgaga ccttcgccaa ggtgcgggcg
     1681 gggctgaatg ccgtgatctt cggccaggac gaagtgatcg agcagaccct ggtcaccctg
     1741 ctggcgggtg gtcacggcct gttgatcggc gtgccgggcc tggccaagac caagctggtg
     1801 gataccttgg gcaccgtgat gggcctggac accagccggg tgcaattcac ccccgacctg
     1861 atgcccgccg acatcaccgg ctccgaagtg atggaagaga gcatcagcgg cgagcgcgcc
     1921 ttccgcttca ttcgcggacc ggttttcacc cagctgctga tggccgacga aatcaaccgc
     1981 gccagcccgc gcacccagtc ggcgctgctg caggcgatgc aggaaaagca tgtcacggtg
     2041 gcgggcgcgc gccacgacct gccgcgcctg ttccatgtcc tggcgaccca gaacccgctg
     2101 gagcaggaag gcacttatcc cctgcccgaa gcccagctcg accgtttcct gctgcagatc
     2161 gatgtcggtt atcccaatct ggaagccgaa cgccgcatgc tgctggccac caccatgggc
     2221 gaggaaaaga ccgcaatacg ggtctgcggc cccgacgatc tgctggacgc ccagaccctg
     2281 gtgcgccgta ttccggtggg cgagaaggtg atggaatcca tcctgtccct ggtgcgcgcc
     2341 gcgcgtcccg acagcgatca tgacagcggt gtgcgcagcc agatcgcttg gggccccggc
     2401 ccccgcgcca gccaggcctt gatgctggcg gcgcgcgccc gcgcgctgct ggacggccgc
     2461 ttcgcgccgt ctaccgacga tgtcgtggcg ctggcaggac cggtgctgcg tcaccgcatg
     2521 gcgctgaatt tctccgcccg ggccgaaggc gccaccacgg ccagcgtgat cgagcggctc
     2581 tgcgcgagtt tgttttgagc cagttctccg cgcttcagca tgaagccgat ggcctgtccg
     2641 ccggcctgcc gccactgatg gtggaggctg atcatctggc ggcgtcggtc agtttgggcg
     2701 tgcatggccg ccgccgtgcc ggcatgggcg aaagcttctg gcaattccgc cgctatgcca
     2761 gtcccgattc ctcctccgcc atcgactggc ggcaatcggc caagtcgcaa catatctttg
     2821 tacgcgaacg cgaatgggaa gccgcccaga cggtgtggtt ctggcgcgac gccagcgcca
     2881 atatgagttt tcagtcgggc ccaaaagaca acggcgtcag caagcgcgcc cgcgccgacc
     2941 tgctgctgct ggcgctggct tcgctgttgg tgcgcggcgg cgagcgggtg ggttttgtcg
     3001 ggatggacgg cgcggccgcc gcctcgcgcc tggccttgac ccgcatcggc cgggccttga
     3061 tcgcgcctgg caccgaggca ctgccgccgc aggcgccttt cgcgcgcggc aaccagctgg
     3121 tgtggttcag cgatttcctg gacgaaaccg tgttcgaggc catgaggcgc ctgtcgcagc
     3181 gcggcgtgga aggccatctg gtgcgcatca tcgatccagc ggaagaggat tttccctatt
     3241 ccggccgcac ccgctttgaa tcgccgcgcg gcgaatcggg cgagattttc ggccgcgccg
     3301 aacgggtgcg cggcgcctac cgcgcccgct tcgtcgccca tggcgaacag atcgcgcagg
     3361 ccgcggccaa gctgggctgg acctgcaccg tccaccgcac cgatcatgcg ccgcaagctt
     3421 cgctgatcgc gttgcatgcc gccattggcg gcgtctgacg ccgtgctgtt tggattccct
     3481 ctgagtttcg ggacgccttt gatcctggcg gcgctgctgg tgctgccgct gctgtggtgg
     3541 ctgctgcgtg tcaccccgcc tctgccgcgc cgcacgccat ttccaccgct gagactgctg
     3601 cgcggtctgg aagacgaaga acagaccccc gccgccacgc cctggtggtt gctgctgctg
     3661 cgcttggctg cggcggcgct gctgatcgtg gcgctggccg atcccttgct gggccgcagt
     3721 cccaagctgg cgacgaacgg cccgctggtg ctggtggtgg acaatggctg ga
//
LOCUS       DATMDK010000226         2358 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_3069068,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000226 DATMDK010000000
VERSION     DATMDK010000226.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2358)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2358)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2358
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3069068"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..204
                     /locus_tag="VNN98_04375"
     CDS             <1..204
                     /locus_tag="VNN98_04375"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61361.1"
                     /translation="PSMMMNPQIPFGLANLNSLIEYRAQVQAYSNDFLFMFLISLPVF
                     VVIWLMKRPSFAAGAAPKIEVVE"
     gene            204..1088
                     /locus_tag="VNN98_04380"
     CDS             204..1088
                     /locus_tag="VNN98_04380"
                     /EC_number="1.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF015411.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050661 - NADP binding [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HWM61362.1"
                     /translation="MKVAFIGLGVMGYPMAGHLKKAGHDVTVYNRNAEKALAWKAEYG
                     GATAATPADAAKGQDIVFCCVGRDSDLRQVTLGEKGAFSTIQKGGLFVDHTTASASIA
                     RELAQEAEKRGFDFVDAPVSGGQAGAVNGKLGIMCGGSEAAYARAEPVMAPYTKLAKR
                     LGPAGAGQLTKMANQICIAGIVQGMAEAFSLARAAGLDVEAVVEVISKGAAQSWQMEN
                     RYKTMNAGEYNHGFAVEWMRKDLAIALDEGRSRGTSLPMTALVDQFYAEVENLGGKRW
                     DTSSLFVRQETARKGNKS"
     gene            1134..1727
                     /locus_tag="VNN98_04385"
     CDS             1134..1727
                     /locus_tag="VNN98_04385"
                     /inference="COORDINATES: protein motif:HMM:NF012655.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR family transcriptional regulator"
                     /protein_id="HWM61363.1"
                     /translation="MAVPSAAGGRGYHHGDLRNGLLEAARTILEEESLSALTLRAVAR
                     KAGVSHAAPYRHFPNHEALLVELSIEGFDELREALAEAAKAQGTECDKIATIGAAYMR
                     FVAQRPALARLMFGSQLPNRDQFPALGLKADSIGSEIGAALHDSALGLAVWASVHGLA
                     MLVLENVIDLGQRRSGLHVLPARAEIILRSLFSTTRD"
     gene            complement(1724..1924)
                     /locus_tag="VNN98_04390"
     CDS             complement(1724..1924)
                     /locus_tag="VNN98_04390"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61364.1"
                     /translation="MKTLLILIFAFSTALTSSTAIAAGGCGPGWHRGSHGRCVRNYMR
                     PHRPVCPRGYHLSRLGRCRPNY"
     gene            complement(1996..>2358)
                     /locus_tag="VNN98_04395"
     CDS             complement(1996..>2358)
                     /locus_tag="VNN98_04395"
                     /EC_number="4.2.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005179750.1"
                     /note="catalyzes the formation of porphobilinogen from
                     5-aminolevulinate; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porphobilinogen synthase"
                     /protein_id="HWM61365.1"
                     /translation="DAVGSAKSLTGDKRSYQMDPANGDEALREVALDLAEGADMVMVK
                     PGMPYLDLVRRVKERFGVPTFAYQVSGEYAMLSAAFEKGWLERDPAILETLTGFKRAG
                     ASGILTYFAVEAAKLLQK"
BASE COUNT          431 a          698 c          790 g          439 t
ORIGIN      
        1 ccttccatga tgatgaaccc gcagattcct tttgggttgg caaatctgaa ttctctcata
       61 gaataccgcg cacaggtgca ggcctattcc aacgacttcc ttttcatgtt cttgatttcc
      121 ctgcctgtgt ttgtggtcat ctggctgatg aaacgtccgt cgttcgcggc cggtgcagcc
      181 cctaagatag aagtggtgga ataatgaaag ttgcattcat cggcctgggc gtgatgggct
      241 atccgatggc gggccatctg aaaaaagccg gccatgacgt gacggtctat aaccgcaatg
      301 ccgaaaaggc tttggcgtgg aaggccgaat atggcggggc gacggccgcc accccggccg
      361 acgccgccaa gggccaggat atcgtattct gctgcgttgg ccgcgattct gacctgcgcc
      421 aagtgacctt gggcgaaaag ggcgccttct ccaccatcca gaagggcggg ttgttcgtcg
      481 atcacaccac ggcgtcggcc agcatcgcgc gcgaactcgc ccaggaagcc gagaagcgcg
      541 gtttcgattt cgtggatgcg ccggtcagcg gcggccaggc aggcgcggtc aatggcaagc
      601 tgggcatcat gtgcggcggc agcgaggccg cttacgcccg cgctgagccg gtgatggcgc
      661 cctataccaa gctggccaag cggctgggcc cggcgggcgc cggccagttg accaagatgg
      721 ccaaccagat ctgcatcgcg ggcatcgttc agggcatggc ggaagccttc agcctggcgc
      781 gcgcggcggg tcttgacgtc gaagccgtgg tggaagtgat ttccaagggc gcggcgcaga
      841 gttggcagat ggagaaccgc tacaaaacca tgaatgcggg cgagtataat cacggtttcg
      901 cggtggagtg gatgcgcaag gatttggcca tcgcgctgga cgagggtcgc agccgcggca
      961 ccagtctgcc gatgacggcg ctggtggatc agttttacgc cgaagtggaa aatttggggg
     1021 gcaaacgctg ggatacgtcc agccttttcg tgcggcagga gaccgcgcgc aagggcaaca
     1081 agtcatagag gtttgttttt atgagtaatg aacgggattc tgctgccgcg ccgatggctg
     1141 ttccttcggc ggcgggcggt cgcggctatc atcacggcga cttgcgcaac ggcttgctgg
     1201 aagcggcgcg caccatattg gaggaagagt cgctgtcggc gctcaccttg cgggcggtgg
     1261 cgcgcaaggc cggcgtcagc catgccgcgc cctatcgcca tttccccaat catgaggcgc
     1321 tgctggtgga actttccatc gagggctttg acgaactgcg agaggcgctg gccgaggccg
     1381 caaaggcgca gggcaccgaa tgcgacaaga tcgccaccat cggcgccgcc tatatgcgtt
     1441 tcgtggcgca gcgcccggcg ctggcgcggt tgatgttcgg cagccagctg cccaatcgcg
     1501 accagtttcc cgccctgggg ctgaaggcgg attccatcgg cagcgagatc ggtgccgctc
     1561 tgcacgacag cgccctgggc ctggcggtgt gggccagcgt gcatggcctg gccatgctgg
     1621 tgctggaaaa tgtgatcgac ctgggccagc ggcgctcggg acttcacgtg ttgccggcgc
     1681 gggcggagat catcctgcgc agtttgtttt cgacgacgcg ggactaataa ttcggccggc
     1741 agcgtccgag gcggctcagg tgatagccgc gcggacagac cggccggtgg ggccgcatat
     1801 aattgcggac gcagcggcca tgcgagccgc gatgccagcc ggggccgcag ccgcccgcgg
     1861 caatcgccgt ggacgaggtc agcgcggtgc tgaaggcgaa aatcaggata agcaacgtct
     1921 tcatgagaat ctccttcgcg ggctgacgag tcatgcgtcc gttcgcggtg gcgcacaatc
     1981 atgcgcccgg gacaattatt tttgcagcag cttcgccgcc tcgacggcga aataggtcag
     2041 gatgccgctg gccccggcgc gtttgaagcc ggtcaaggtt tccaggatgg cagggtcccg
     2101 ctccagccag cctttttcaa acgccgccga cagcatcgcg tattcgcccg acacctgata
     2161 ggcgaaggtg ggcacgccga aacgctcctt cacccggcgc accaggtcga gataaggcat
     2221 gcccggcttg accatcacca tgtcggcgcc ttcggccagg tccaacgcca cttcgcgcaa
     2281 agcttcgtcg ccattggccg ggtccatctg gtaactgcgt ttgtcgccgg tgagcgactt
     2341 ggccgaccca accgcgtc
//
LOCUS       DATMDK010000227         2091 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2838584,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000227 DATMDK010000000
VERSION     DATMDK010000227.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2091)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2091)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2091
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2838584"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..392
                     /locus_tag="VNN98_04400"
     CDS             <1..392
                     /locus_tag="VNN98_04400"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61366.1"
                     /translation="TRENTGEIRPIIGWRFGDDNRWSFTFNPILDNSYAGFSRLDFAP
                     ATRLDYKVNETWTLAAEEYDDFGELRGFTPSDQQSHQVWSVVDYTGNPISVEAGMGFG
                     LTSATDKLAVKLMLMSDLTGPHGLFAK"
     gene            491..1243
                     /locus_tag="VNN98_04405"
     CDS             491..1243
                     /locus_tag="VNN98_04405"
                     /inference="COORDINATES: protein motif:HMM:NF018178.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1080 domain-containing protein"
                     /protein_id="HWM61367.1"
                     /translation="MKKFALLLVLLPAAAMAQATYPGGNPPPKPDLTESWSPVPPKVE
                     PGKMLGQPPSDAIILFNGKDLSGWESVNGGPAEWGIENGEMVDQPKAGHIQTKQRFGD
                     VQLHVEWMIPVLPQGRKGQDRGNSGVFLQGLYEVQVLDTYDNPTYVNGEAGAIYKQSA
                     PLVNALKPAPNWQAYDIVYYAPRFYNDGTLAEPARITVFLNGVLVQNNFAILGPTDYR
                     MLPAYKAHGDAPIMLQAHNNAVRYRNLWVRKI"
     gene            complement(1429..1878)
                     /locus_tag="VNN98_04410"
     CDS             complement(1429..1878)
                     /locus_tag="VNN98_04410"
                     /inference="COORDINATES: protein motif:HMM:NF016807.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BLUF domain-containing protein"
                     /protein_id="HWM61368.1"
                     /translation="MRQLLYVSSTASDIAPGDLDDILTASRRNNALMGISGLLLFIDG
                     GFLQMLEGEERAVRELYTRVATDRRHWNPRLMLDREVASRAFPDWSMGFERPCMDDPE
                     TAGIFGVARSAIQDRLSPNTGRIVAMMLQTFYHVQHSDVPANLYYAG"
BASE COUNT          413 a          622 c          664 g          392 t
ORIGIN      
        1 acaccaggga gaataccggc gaaatccgtc ccatcatcgg ctggcgcttc ggcgatgaca
       61 atcggtggag cttcacgttc aatcccatcc tggacaatag ctatgcgggt ttttcgcggc
      121 tggatttcgc gcccgcaacg cggcttgact acaaggtcaa cgagacatgg accttggcgg
      181 ccgaagagta tgacgatttc ggcgagttgc gcgggttcac gccgtcggac cagcaatccc
      241 atcaagtgtg gagcgtggtg gattacaccg gcaatcccat ctcggtcgaa gcgggcatgg
      301 gtttcggatt gacctccgcc accgataagc tggcggtgaa gctgatgttg atgagcgacc
      361 tgaccgggcc gcacggactg ttcgcgaaat agtttttcgg aagatcgggc actgtcacgg
      421 cgaattgacc cggcgcggcc cgcgtcgcaa gctataccat cgccgcatca gacggcgcgg
      481 gaggtttcac atgaaaaaat tcgccctgct gcttgttcta ttacccgctg ccgccatggc
      541 gcaggccacc tatccgggcg gcaatccgcc gcccaagccc gatctgacgg aaagctggtc
      601 gccggtgccg cccaaggtcg agcccggcaa aatgctgggc cagccgccgt ctgacgccat
      661 catcctgttc aacggcaaag acctttccgg ttgggaaagc gtcaatggcg gcccagcgga
      721 atgggggatc gaaaatggcg agatggtgga ccagcccaag gccggccata tccagaccaa
      781 gcagagattc ggcgacgtgc agctgcatgt cgaatggatg atcccggtgc tgccgcaggg
      841 ccgcaaaggc caggaccgcg gcaacagcgg cgtgttcctg cagggcctgt atgaagtgca
      901 agtgctggat acctacgaca atcccactta cgtcaatggc gaggcggggg cgatctacaa
      961 acaatcagcg ccgctggtaa atgcgctgaa gcctgcgccc aactggcagg cctatgacat
     1021 cgtctattac gccccgcgct tttacaacga cggcaccctg gccgagccgg cgcgcatcac
     1081 cgtgttcttg aatggcgtgc tggtgcagaa caatttcgcg attctggggc caaccgacta
     1141 tcgcatgctg ccggcctata aggcgcatgg tgatgcgccg atcatgctcc aggcgcataa
     1201 caatgcggtg cggtatcgga atttgtgggt gcggaagatt tagggttcgt gataaaaacg
     1261 cgccacatgt catggcccgc aaatgcgggc cacccaggtg atggcaatcg cgggtgtcga
     1321 aagatatatc tcagccaaat ttttcgattc agagcctgtc ccagctgggt ggcccggagg
     1381 cccgggccat gacatccaga gtgtgattcc cttcaaccca aaccggctct agccggcata
     1441 gtagagattc gccggcacat cgctgtgctg cacatgatag aaagtctgca gcatcatcgc
     1501 cacgatccgc cccgtgttgg gcgacaggcg gtcctggatc gccgagcggg cgacgccgaa
     1561 tatgccggcg gtttccgggt catccatgca ggggcgttca aaacccatgc tccagtcagg
     1621 aaaagcgcgg ctcgcgactt cgcggtccag catcaggcgg ggattccagt ggcggcgatc
     1681 ggtggcgacg cgggtataca attcgcgcac cgcgcgctct tcgccttcca gcatctgcag
     1741 gaagcccccg tcgataaaaa gcagcaggcc ggaaatgccc atcagcgcat tgttgcggcg
     1801 ggacgcggtg aggatatcgt ccaggtcgcc cggggcgata tcgcttgcag tgctgctgac
     1861 atagagaagc tggcgcatcc cgccagcttg gcgcttcagc gttgaaagaa agtgaagtcc
     1921 cgcccatttt ttgggcgggc cgttccattc ctttacgagt ccttactgcg ctggctgcgg
     1981 cggcgcggtg gcctccgcgg gcgctgccgg cgcggcgggc gcagcttccg caggcgccgc
     2041 cgcggcctcg ggcggtttgg cggcggcggt ctggttcgcg gcttgcggat g
//
LOCUS       DATMDK010000228         3867 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_346833,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000228 DATMDK010000000
VERSION     DATMDK010000228.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3867)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3867)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3867
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_346833"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..640
                     /locus_tag="VNN98_04415"
     CDS             <1..640
                     /locus_tag="VNN98_04415"
                     /inference="COORDINATES: protein motif:HMM:NF024811.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="HAD-IA family hydrolase"
                     /protein_id="HWM61369.1"
                     /translation="DGTLADTAPDLLGATNAVLAARGRALLDLGHLRHMVGFGAIALI
                     KQAMEASGAPISEEEMPALVEIFLAHYRAHIADGSRLFPQVAETLAALKADGARLGVL
                     TNKPQELTDLLLPRLELEGLFAAVYGAGRKPYTKPDPRIFHDVVKDVSEGASAVMIGD
                     SITDLSTARAAGVPCILMSYGYTHVPVKDLGADLVLDDFAALPDALRDLKLL"
     gene            complement(637..1071)
                     /locus_tag="VNN98_04420"
     CDS             complement(637..1071)
                     /locus_tag="VNN98_04420"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HWM61370.1"
                     /translation="MQRCIVIADDDPIIISLVKLRLGLARYTVIATTDAMAAVALVRA
                     KEPVAVILDVQMPGGGGPLPGGLAALAKIKTDPLMAKLPVMMLTGERNPEIVMQAMTE
                     GADDYMVKPFKPDILLERISRLVKSSGMVWGHAPASATTWEL"
     gene            1253..2848
                     /locus_tag="VNN98_04425"
     CDS             1253..2848
                     /locus_tag="VNN98_04425"
                     /inference="COORDINATES: protein motif:HMM:NF017081.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HWM61371.1"
                     /translation="MPATAPFLRREFLAATLCATAGFFVLGYGAIWLTHNSSSTAIIW
                     PADAFALCLMLRYARGWRERGVMLAGILIADLFSNGLGVPSLPLTIGYALVNTLELAL
                     CLALVGRRRALHFANARAVALFGLKVAFLPPLLGGIAAMAVTRLGGGPDAFAAGLNWS
                     FADLLGFCIIFPIGMTISWRQIEKLQLRRRLPLALGVVVLVVAVTVWVFPLRHYPLQF
                     LILPAALIATSRFRILGAGTAMIVIAGIVLAESVPHLSFSEVSRIQYLQLFLAVCSLV
                     CVRAAGLLNQRDLHQAISERQHRRAVRASRFKSQLLAHVSHEVRSPLSAIIGFSAMLE
                     SGSLSAQRAPEFAAIIAHNGELLQRLHDDLLDLSRAEAGVLCIQPERVAVGATLQACI
                     SAIRLDASLGGKDVLMDSVEDALAVQADPIRLAQILNNLIANAFKYGDNFSPIRVTAS
                     RRADGFGRIEIANTGPGIPDGERQAVFLPFRRSETVGRSVPGAGLGLSIAKLLVEAQG
                     GRIDFESVPGRQTRFWIDLPLVA"
     gene            2894..2968
                     /locus_tag="VNN98_04430"
     tRNA            2894..2968
                     /locus_tag="VNN98_04430"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:2926..2928,aa:Val,seq:cac)
BASE COUNT          688 a         1229 c         1176 g          774 t
ORIGIN      
        1 ggacggcacc ttggccgata ccgcgcccga cctgctgggc gcgaccaacg cggttctggc
       61 cgcccggggg cgtgccctgc tggacctggg ccatctgcgc cacatggtgg gcttcggggc
      121 cattgccctc atcaagcagg ccatggaggc cagcggcgcg cccatcagcg aagaggagat
      181 gccggcgctg gtggagattt tcctcgccca ttaccgcgcg catatcgccg acggcagccg
      241 gctgtttccg caagtggccg aaaccttggc ggcgctgaag gcggacgggg cgcggctggg
      301 ggtgctgacc aacaagccgc aggaattgac cgacctgctg ctgccgcgcc tggaactgga
      361 gggcctgttc gccgccgtct atggcgcggg gcgcaaaccc tataccaagc cggacccgcg
      421 catcttccac gatgtggtga aagatgtgtc cgaaggcgct tcggcggtga tgatcggcga
      481 ctccatcacc gatctcagca cggcccgggc ggcaggcgta ccctgcatat tgatgtccta
      541 cggatacacc catgtgccgg tgaaagacct gggcgcggac ctggtgctgg acgatttcgc
      601 cgcactgccg gacgccctgc gcgacttgaa actgctttag agctcccagg tcgtggcaga
      661 ggctggcgcg tggccccaca ccatcccgct ggatttcacc agacgcgata tccgttccag
      721 cagaatgtcg ggcttgaacg gcttgaccat gtaatcgtcg gcgccctcgg tcatcgcctg
      781 catcacgatt tcggggttgc gctcgccggt cagcatcatc accggcagct tggccatcag
      841 cgggtcggtc ttgatcttgg ccagcgcggc caatcctccg ggaagtgggc cgccgccgcc
      901 cggcatctgc acgtccagga tgacggccac gggctccttg gcgcgcacca gggccaccgc
      961 cgccatcgca tcagtggtgg cgatgacggt gtagcgggcc agccccaggc gcagcttcac
     1021 caggctgatg atgatgggat cgtcgtcggc aataacgatg cagcgctgca tgaaaggccc
     1081 cccggcgatt tcaggcgaag catggcctgc cagggcttaa aagttccttc ctgaaatgtc
     1141 agcccgagac ttttttgtca gctttttttg ccttgcaacc ctgccgtgtc cgaaagttgc
     1201 tgacatttca gtcgaatcgg cgcaaatcca cacctcgttt gggggaaatt acttgccagc
     1261 caccgcgccc ttcttgcgcc gggagttcct cgccgccacg ctttgcgcga cggccggctt
     1321 tttcgtgctg ggctatggcg ccatctggct gacccacaac agcagttcca ctgccatcat
     1381 ctggccggcc gacgccttcg cgctgtgcct gatgctgcgc tacgccaggg gctggcgcga
     1441 gcgcggtgtg atgttggcgg gcatcctgat cgccgatctg ttcagcaacg ggctgggcgt
     1501 gccgtcgctg ccgctgacca tcggctatgc cctggtcaac acgctggaac tggcgctgtg
     1561 cctggcgctg gtgggccgca ggcgggcgct gcatttcgcc aacgcccgcg ccgtggcgct
     1621 gttcggcctc aaggtcgcct ttctgccgcc gctgctgggc ggcatcgctg ccatggcggt
     1681 gacgcgattg ggcggcggac ccgacgcctt tgcggcggga ctcaactggt ccttcgccga
     1741 cctgttgggc ttttgcatca ttttccccat cggcatgacc atctcctggc ggcagatcga
     1801 aaagctgcaa ctgcgccggc gcctgcccct ggcgctgggc gtggtggtgc tggtggtggc
     1861 ggtcaccgtg tgggtgtttc cgctgcgcca ctatccgctt caattcctga tcctgcccgc
     1921 cgccctgatc gccaccagcc gctttcgcat cctgggcgcg ggcacggcga tgatcgtcat
     1981 cgccggcatc gtgttggccg agtcggtgcc ccatctgtcg ttcagcgagg tgtcgcgcat
     2041 ccagtatctg caactgttcc tggcggtgtg cagcctggtc tgcgtgcgcg ccgcggggct
     2101 gctgaaccag cgcgacctgc atcaggcgat cagcgaacgc cagcaccgcc gcgccgtgcg
     2161 cgccagccgc ttcaagagcc agctgctggc tcatgtcagc catgaggtgc gcagtccgct
     2221 gtccgccatc atcggctttt ccgccatgct ggagtccggc tcgctgtcgg cgcagcgggc
     2281 gccggaattc gccgccatca tcgcccataa tggcgagctg ctgcagcggc tgcatgacga
     2341 cctgctggac ctcagccgcg ccgaagcggg cgtcttgtgc atccagcccg agcgggtggc
     2401 ggtgggcgcc accttgcagg cctgcatcag cgccatccgc ctggacgcca gcctgggcgg
     2461 caaggatgtg ctgatggaca gtgtggaaga cgctctggcg gtgcaggccg atcccatccg
     2521 gctggcgcag atcctcaaca acctgatcgc caatgccttt aagtatggcg acaatttctc
     2581 gcccatccgg gtcaccgcca gccggcgggc agacggcttc ggccgcatcg agatcgccaa
     2641 taccggcccc ggcatcccgg acggcgagcg ccaggcggtg ttcctgccct ttcgccgctc
     2701 ggaaacggtg ggccggtcgg tccctggcgc gggcctgggc ctttccatcg ccaagctgct
     2761 ggtcgaggcg cagggcgggc ggatcgattt cgagagcgtt cccggccgcc agacccggtt
     2821 ctggatcgac ttgcctctcg tcgcttgacg ggtccggaag ccgcccttat agccctgccc
     2881 ctccgtcatg gacgggcgcg tagctcagcg ggagagcact cccttcacac gggaggggtc
     2941 acaggttcaa tccctgtcgc gcccaccaat atttccgcag aaaagctgga tttttcgatc
     3001 cccttcagcg cgccaaacgg aattgggcgg aaggaaatgg agcctgtgca cccctaaagg
     3061 tgtgcactat ccgtgcactc cagacctaac cttggcaacg tgaggccttt ggtcaaaatc
     3121 ggcttattcg ctggcattat tgcttcaaag caatgcgaac accgcacgaa cgatagccga
     3181 acaggtgaga acgtactccc aaggtactcc cgagctggct gctgtgtgac aatagcgtga
     3241 agtacgcctt gaagcttttg ataaaaattt ccagtaagca ggagcaacgg catagtgcta
     3301 ctgggtggag gtctttgcga ccgcggcttc agaaaactga cagtaaatca gttttgcggc
     3361 gcctaaactc gttcggccaa taattttcta actgcgcaac gattaacctg tttcgataac
     3421 taagactatt ctttactttt tttactgagc gatctgaatt tggctcagag ttgagaaatg
     3481 aattcccaga gggcaaatcc caatatgccc agagaaatcg agaagctaga gataaccacg
     3541 caccaaaagg cctctggaaa atgtcgccgg tcaagcacac cataatatgg tccaaagcgg
     3601 aatttcccgc tccgccaaat agaaactgtt gtaacgaaga aaattatgga cgcggaaagt
     3661 gatacgattc cccgcgcggt ctgatcactc attgctgaat ctcccaggtc attttgagaa
     3721 tatcaccaac ttgccggacg ggcgatttca tattttgtct agtacttgaa cagagcctcc
     3781 ctccacgccc tccacctctg ccgccagcta caatcagcga actaattacc gctatagtca
     3841 catacgggtg gtaacggcgg cgctggg
//
LOCUS       DATMDK010000229         2385 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2617769,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000229 DATMDK010000000
VERSION     DATMDK010000229.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2385)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2385)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2385
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2617769"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(87..506)
                     /locus_tag="VNN98_04435"
     CDS             complement(87..506)
                     /locus_tag="VNN98_04435"
                     /inference="COORDINATES: protein motif:HMM:NF012264.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HWM61372.1"
                     /translation="MTIRLLAGAVLALTATAALADTAGPAPKPNAQGPAISGFFSPFP
                     FQGGEAIYKGVCQGCHMPDAKGAVGAGAYPALAKNENLETASYPVSIVLKGQKAMPFF
                     GMQLNDQQIADVVNYVRTHFGNKYKDKVKPEDVKLMR"
     gene            complement(521..2113)
                     /locus_tag="VNN98_04440"
     CDS             complement(521..2113)
                     /locus_tag="VNN98_04440"
                     /inference="COORDINATES: protein motif:HMM:NF013739.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavin monoamine oxidase family protein"
                     /protein_id="HWM61373.1"
                     /translation="MTDQPLAPSRRSLLSMIGVVAGSAAMYHAMTEMALADTSTFKGP
                     IKLSPPPNGTSVLILGAGIAGMVAAMELRDAGYKVQVLEYNGRPGGRNWSLYGGDSYT
                     EMGGFTQKVQFDPGQYINPGPWRLPYHHQGILHYVNRLGVALEPFTQVNYNAYVHSTD
                     SFGGKPQRYRTVQADFYGQVAELLSKTTKQGALDQAVTKQDREILMTALKEWGALDAN
                     YQYATGLEAGERRGFASDPGGGLTSVPIAGKRIEMSDLLKSGLWSAIGAGLAYDMQST
                     IFQPKGGMGQVGKAFGKALEPLIQYNCKVVEIKQGDKGVEVSYTDSRTGGTPKTAAAD
                     WCVCTIPASVLSQIPMNVGGPMKAAINQIPYMAALKVGLQMKRRFWEQDEQIYGGVTY
                     TNQPNTMIGYPQWDFFSKGKGVLLGSYCFGTPAYIAAAKPPEERIKDALEYGAKIHLQ
                     YATEYECGVAVAWHRVPWTLGCAGFWTEEARAKHYDNLCAMDGRIVLAGEHASRIPAW
                     QEGAVTSALDAITRLHKKAMSA"
BASE COUNT          409 a          746 c          757 g          473 t
ORIGIN      
        1 aaagtgcccc gcggttacgc gctggcttcg cagcgcgacg ggatacgcta cgaaatgaag
       61 aaggtactgg tcaccgacaa gggcggctaa cgcatcagct tgacgtcttc cggcttcacc
      121 ttgtccttat acttgttgcc gaaatgggtg cgcacatagt tcaccacgtc ggcaatctgc
      181 tggtcgttca gctgcatgcc gaagaagggc atcgccttct ggcccttcag cacgatggaa
      241 accggatagg atgcggtctc cagattttcg ttcttggcca gcgccggata ggcgcccgcg
      301 cccaccgcgc ctttggcgtc gggcatatgg cagccctggc acacaccctt gtagatcgcc
      361 tcgccgccct ggaaggggaa aggcgagaag aagccggaaa tggcggggcc ttgcgcattc
      421 ggcttgggcg ccgggccggc agtgtccgcc aaagcggccg tcgcggtcag cgccaggacg
      481 gcgccggcaa gcaagcggat ggtcatcttg gtctccatga tcaggcgctc atcgctttct
      541 tgtgcaggcg ggttatggcg tccagcgcgc tggtcacggc gccttcctgc caggcgggaa
      601 tgcgcgaggc atgctcgccc gccagcacga tgcgcccgtc catggcgcag agattgtcgt
      661 aatgcttggc gcgggcttcc tcggtccaga agccggcgca gcccagggtc cagggcaccc
      721 ggtgccaggc gacggcgacg ccgcattcat actccgttgc atattggaga tggatcttgg
      781 cgccgtattc cagcgcgtcc ttgatgcgct cctccggcgg cttggccgcg gcgatatagg
      841 ccggggtgcc gaagcaatag gaccccagaa gcacgccctt gcccttggag aagaagtccc
      901 actggggata gccgatcatg gtgttgggct ggttggtgta ggtcacgccg ccatagatct
      961 gctcgtcctg ttcccagaaa cgacgcttca tctgcaggcc gaccttcaac gccgccatgt
     1021 aggggatctg gttgatcgcc gccttcatcg ggccgccgac attcatcggg atctggctca
     1081 gcaccgaggc cgggatggta cagacacacc aatccgcagc tgccgtcttg ggcgtgccgc
     1141 cggtgcggct gtcggtataa gaaacttcga cgcccttgtc gccctgcttg atttctacga
     1201 ctttgcaatt gtactggatc agcggttcca gcgccttgcc gaaggccttg ccgacttggc
     1261 ccatgccgcc cttgggctgg aagatggtgc tctgcatgtc ataagccagg ccggcgccga
     1321 tcgccgacca caggccggac ttgagcaggt cgctcatctc gatgcgcttg cccgcgattg
     1381 gtacgctggt caatccgccg ccgggatcgc tggcaaagcc gcggcgttcg cccgcttcca
     1441 ggccggtggc atactggtag ttggcgtcca atgcgcccca ttccttcagt gccgtcatca
     1501 ggatctcgcg gtcctgcttg gtcactgcct ggtccagcgc gccctgcttg gtggtcttgg
     1561 acagaagctc cgcaacctgg ccataaaagt cggcctgtac cgtgcgatag cgctgcggct
     1621 tgccgccgaa gctgtcggtg gaatggacat aggcgttgta gttgacctgg gtgaagggct
     1681 ccagcgccac gcccagccgg ttcacataat gcaggatgcc ctgatggtga tagggcaggc
     1741 gccagggacc gggattgatg tactggccgg gatcgaactg caccttctgg gtgaagccgc
     1801 ccatctcggt atagctgtcg ccgccataaa gcgaccagtt ccgcccgccg gggcggccat
     1861 tatattccag cacctgcacc ttatagccgg cgtcgcgcag ctccatcgcc gcgaccatgc
     1921 cggcgatgcc cgcgcccaga atcagcaccg aggtgccgtt cggcggcggc gacagtttga
     1981 tcggtccctt gaaggtcgag gtgtcggcca gggccatctc ggtcatggcg tgatacatcg
     2041 cggcgctgcc ggcgacgacg ccgatcatgc tgagaaggga gcgccggctt ggcgctaacg
     2101 gttggtctgt catgcttttc tccccgtgac aaagatcatg ggccgcggac tacgcggcca
     2161 ttcgccgttc cctgcctgaa gaaatccccg tgcgcgcccg ttccggcgct tgctggtgcg
     2221 cgattctgct cgcgccgtac gaggattaaa gcggtgcgga tggtcaggcg caacgcgtgg
     2281 ctgcgaaaat agttctgccc aaaaacacgt cagattgctg cgcgaaaggg cggcaacaga
     2341 aatgtcagta gccatgctct tcccgccagt tcttccgcat gtcac
//
LOCUS       DATMDK010000230         3111 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1705791,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000230 DATMDK010000000
VERSION     DATMDK010000230.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3111)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3111)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3111
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1705791"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..211
                     /locus_tag="VNN98_04445"
     CDS             <1..211
                     /locus_tag="VNN98_04445"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61374.1"
                     /translation="LLDHDAAQRNSQIAVLKKTLGACGAANPIHSDNAMSAMVTYPCE
                     HGTLRVRVSLAPTAPASLQTLEFQL"
     gene            complement(324..749)
                     /locus_tag="VNN98_04450"
     CDS             complement(324..749)
                     /locus_tag="VNN98_04450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009364566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MucR family transcriptional regulator"
                     /protein_id="HWM61375.1"
                     /translation="MGKDSEDDILKLVTEIVAAYVSKNPVAASELPTIIKNVHATLGS
                     FGGIEAHPLPRAPAVPVKKSIQPDYIVCLEDGKKLKMLKRYLRSRYKLSPAEYRTRWN
                     LPPDYPMVAPNYAQKRSDFAKKIGLGKGGDRKGKKKKKN"
     gene            973..2247
                     /gene="glyA"
                     /locus_tag="VNN98_04455"
     CDS             973..2247
                     /gene="glyA"
                     /locus_tag="VNN98_04455"
                     /EC_number="2.1.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008034798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004372 - glycine hydroxymethyltransferase
                     activity [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_function: GO:0070905 - serine binding [Evidence IEA];
                     GO_process: GO:0019264 - glycine biosynthetic process from
                     serine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydroxymethyltransferase"
                     /protein_id="HWM61376.1"
                     /translation="MDKKSGFFTEGLEAADPEVFSSVQDELNRQQGKIELIASENIVS
                     KAVLEAQGSVLTNKYAEGYPGKRYYGGCEYVDVAEQLAIDRACKLFGASYANVQPHSG
                     ANANQEVFYALLQPGDPFMGLDLAAGGHLTHGHPANYSGKWFKPVPYTVRKDDQRIDM
                     DQVAALAREHKPKLILAGGSAYARIIDFAAFRKIADEIGAYLMVDMAHFAGLVAGGVH
                     PNPVPHAHVVTTTTHKTLRGPRGGMILSNDADLGKKFNSAVFPGLQGGPLMHVIAAKA
                     VAFGEALKPEFKTYAKNVVENAKALAEVLKGSGLHIVTGGTDTHLMLVDLRPKGAKGR
                     PTEHALDRAGITCNKNAVPFDTEKAVITSGIRLGSPAGTTRGFGVAEFREIGKLIVEV
                     VDAVAKNEAGDAQVEQSVAHRVSELCARFPIY"
     gene            2260..2721
                     /gene="nrdR"
                     /locus_tag="VNN98_04460"
     CDS             2260..2721
                     /gene="nrdR"
                     /locus_tag="VNN98_04460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020044467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0140110 - transcription regulator activity
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator NrdR"
                     /protein_id="HWM61377.1"
                     /translation="MRCPFCGHEDSQVKDSRPSEDNSAIRRRRHCPECGGRFTTFERV
                     QLRELIVIKKNGRRESFDRDKLERSINHALRKRPVERERVDRTITGIVRRLESMGENE
                     IPANVIGELVMQALASLDKVAYVRFASVYKNFRETRDFEALIGELEGDDKD"
     gene            2819..>3111
                     /locus_tag="VNN98_04465"
     CDS             2819..>3111
                     /locus_tag="VNN98_04465"
                     /EC_number="2.5.1.78"
                     /inference="COORDINATES: protein motif:HMM:NF013081.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009349 - riboflavin synthase complex
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="6,7-dimethyl-8-ribityllumazine synthase"
                     /protein_id="HWM61378.1"
                     /translation="MNILIVEARYHPDVADALVDGATAALEKGGARFERMSVPGVLEV
                     PAAIAIAVRSPKPFDGYVALGSVTGPAHIADMFYAETIRGLMVLGAGGIALGNG"
BASE COUNT          581 a          987 c          951 g          592 t
ORIGIN      
        1 gctgctcgac cacgatgcgg cgcagcgcaa ttcccagatc gccgttttga agaagacgtt
       61 gggcgcttgc ggcgccgcca atccgatcca tagcgataac gcgatgtcgg caatggtcac
      121 ctatccctgc gaacatggga cattgcgcgt gagggtatcg cttgcgccaa ccgcccctgc
      181 ctcgctgcaa acgctcgagt ttcaactcta ggccgatagg cgatcgcctg cggtccgaat
      241 gataaggcgg tttttatagc gggagggccg tgggccgctc gcatgtccac tggacatgct
      301 cgcgcccttc gggcgctgca ggctcaattc ttcttctttt tcttgccttt gcggtcgccg
      361 cctttgccaa gcccgatctt cttggcgaag tcgctgcgct tctgggcgta gttgggcgcc
      421 accatgggat agtcgggcgg caggttccag cgggtgcgat attcggcggg tgacagcttg
      481 tagcgcgagc gcagatagcg cttcagcatc ttcagctttt tgccgtcctc caggcagacg
      541 atgtagtcgg gctggatcga cttcttcacc ggcactgccg gcgcgcgggg cagggggtgc
      601 gcctcaatgc cgccaaaact gcccagggtg gcgtggacat tcttgatgat ggtgggcagc
      661 tcgctggctg ccaccggatt cttgctgaca taggcggcga cgatctccgt caccagcttg
      721 aggatgtcgt cctcgctatc cttgcccata catccatgcc caatgttacc gccgccacta
      781 taggacagcc gacagcacag gaaatctcag cttttcccgt gccttgcaag aagctcctcc
      841 tttcatgctt aaaccgctag atttggtgcc ggggaagggg taaatccgcc attcctgcgc
      901 gggggcgcta aatcgtcccc catacccgtt ccagttgcaa agaggccctc aatgtcggct
      961 gccgccactc ccatggacaa gaagtccggc tttttcaccg agggactgga agccgctgac
     1021 ccggaggtct tcagcagcgt tcaggacgag ttgaaccgcc agcagggcaa gatcgagctg
     1081 atcgcctcgg agaacatcgt ttccaaggcg gtgctggaag cccaaggctc ggtgctgacc
     1141 aacaaatatg ccgagggcta tcccggcaag cgctattacg gcggctgcga atatgtcgat
     1201 gtggccgagc agctggcgat tgaccgcgcc tgcaaactgt tcggcgccag ctacgccaat
     1261 gtgcagcccc attccggcgc caatgccaac caggaagtgt tttatgccct gctgcagccg
     1321 ggcgacccgt tcatgggcct ggatttggcc gccggcgggc accttaccca cggccatccc
     1381 gccaactatt ccggaaaatg gttcaagccg gtcccttaca ccgtgcgcaa ggatgaccag
     1441 cgcatcgaca tggaccaggt cgcggcattg gcccgcgagc ataagcccaa gctgatcctg
     1501 gccggcggca gcgcctatgc ccggatcatc gatttcgccg ccttccgcaa gattgccgac
     1561 gagatcggcg cctatctgat ggtggacatg gcgcatttcg ccggcctggt ggcgggtggc
     1621 gtccatccca atccggttcc ccatgcccat gtggtgacca ccaccaccca taagaccctg
     1681 cgcggcccgc gcggcggcat gatcctttcc aacgatgcgg acttgggcaa gaagttcaac
     1741 tccgcggtgt tccccggcct gcagggcggt cccttgatgc atgtcatcgc cgccaaggcg
     1801 gtggcgttcg gcgaggcgct gaagccggaa ttcaagacct atgcgaagaa tgtggtggag
     1861 aatgccaagg cgctggccga ggtgctgaag ggcagcggac tccacatcgt caccggcggc
     1921 accgacaccc atctgatgct ggtggacttg cgccccaagg gcgccaaggg ccgccccacc
     1981 gaacacgcgc tggaccgcgc cggcatcacc tgcaacaaga acgccgtgcc cttcgatacc
     2041 gaaaaggctg tgatcacgtc gggcatccgg ctgggttcgc ccgccggcac cacccgcggt
     2101 ttcggcgtcg ccgaattccg cgagatcggc aagctgatcg tggaagtggt ggacgccgtc
     2161 gccaagaacg aagcgggcga tgcccaggtc gaacagagcg tggcgcaccg cgtcagcgaa
     2221 ttgtgcgccc gtttcccgat ctattgataa gaggccctga tgcgctgccc attctgcgga
     2281 catgaagaca gccaggtgaa ggattctcgt ccttccgagg acaattccgc catccgccgc
     2341 cgccgccatt gtcccgaatg cggcggacgc ttcaccacct tcgagcgggt gcagttgcgc
     2401 gagctgatcg tgatcaagaa gaacggccgc cgcgaaagct tcgaccgcga caagctggaa
     2461 cgctccatca accacgccct gcgcaagcgc ccggtggaac gcgagagggt ggaccgcacc
     2521 atcaccggca tcgtgcgccg tctggaatcc atgggcgaga acgaaatccc ggccaatgtg
     2581 atcggcgaat tggtgatgca ggccctggcc agcctggaca aggttgccta tgtccgcttc
     2641 gcctcggtct acaagaattt ccgcgagacc cgcgacttcg aggcgctgat cggcgaactc
     2701 gaaggggatg ataaagattg atgattcaac cccctccgcc cttcgcacct aatcggtgct
     2761 acgggcacct cccccttgcc ttgcttcgca agaaggggga ggcgggcatg tgcttgatat
     2821 gaacatattg attgtcgaag cccgttatca cccggacgtc gccgacgcct tggtggacgg
     2881 cgccaccgcg gcgctggaaa aaggcggcgc gcggttcgag cgcatgtcgg tgcctggcgt
     2941 gctggaagtc cccgccgcca tcgccatcgc ggtgcgttcc cccaagcctt ttgacggata
     3001 tgtcgcactg ggcagcgtca caggccccgc tcatatcgcc gatatgttct atgccgaaac
     3061 catacgcggg ctgatggtgc tgggtgccgg cggcattgcc ctgggcaacg g
//
LOCUS       DATMDK010000231         3240 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2839353,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000231 DATMDK010000000
VERSION     DATMDK010000231.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3240)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3240)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3240
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2839353"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(106..1326)
                     /locus_tag="VNN98_04470"
     CDS             complement(106..1326)
                     /locus_tag="VNN98_04470"
                     /inference="COORDINATES: protein motif:HMM:NF012678.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-containing alcohol dehydrogenase"
                     /protein_id="HWM61379.1"
                     /translation="MTPLFGALRLPASVIFGSGQRAALGMMTAQIGKRALVCTDARMG
                     ADAQFLAIVADLKANGVEVKVYDRTEADLPIEGISGCVIECADFKPDVVLGIGGGSCM
                     DMAKCVSVLLKHGGSLRDYYGENKIPGPVFPVIAVPTTSGTGSEVTPVAVIADTERGT
                     KVGISSPYLIPVAAVCDPELTVSCPPGLTAVSGADALTHAIESFTAAARVVTPELTVK
                     NVFVGKNVLSDTFGLLALQNIFKALRTAVRDGKNIEAREQMMLASLSAGCAFGAAGTA
                     AAHAIQYPVGNETHTPHGMGVALLMPYVMEFNRPNCVTAFAQIGRAIGLAGTDEELSH
                     LLIDEVAKLLKDIGIPVTLKELGLPEDKQDWTAESAIGAARLVNNNPRKLDLDAIKAI
                     TRAAYSGDRASLSS"
     gene            complement(1323..2348)
                     /locus_tag="VNN98_04475"
     CDS             complement(1323..2348)
                     /locus_tag="VNN98_04475"
                     /inference="COORDINATES: protein motif:HMM:NF014653.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ldh family oxidoreductase"
                     /protein_id="HWM61380.1"
                     /translation="MLVPIEEVRKLAEGILLANGVPADHARTQAGLFLEAEMRAIPSH
                     GFLRLRRVIERIHAGLTVPGVTGEQSWTARSFLSVDGMRGLGPVVAMAALDAIVPRAR
                     EDGIAIAAIRNTNHLGALAYYAEHVATGGLTCIALTISEALVHPWGGRKAMIGTNPIA
                     IGVPADPTPMVLDMATGLVSMGKIHDHANRGAPIPLGWALDENGDPTTDAAAAKKGAI
                     APFGGPKGYALGIAFEVLVASLAASAIGTDVKGTLDSVNVSNKGDLFIVIAPPHADAA
                     RALVTHYLDDIRAAAPADAAHPVLAPGDRAHAVRAQSEKRGIYLDDGLWNDLQQLAAD
                     SSKGKVS"
     gene            2441..3094
                     /locus_tag="VNN98_04480"
     CDS             2441..3094
                     /locus_tag="VNN98_04480"
                     /inference="COORDINATES: protein motif:HMM:NF019349.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HWM61381.1"
                     /translation="MSAVEAVPDRQIVRPSGLAEEVYRRIRADIMSLRLPPDTRVSVD
                     SLARELGVSQTPIREALSMLEANGLVSKRHFAGYATSPRMDRAQLDELFEFRLLIEPH
                     AARKAAEAMADADMAVLSSGELASSHDVFADMDTEFHRLIAQGAGNHLIADSLARLHI
                     HVHIFRSCFRSEIAEEAVHEHDAVIAAIRKRDGAAAEAAMRRHIERSYGRLRDFIKE"
BASE COUNT          581 a         1025 c         1055 g          579 t
ORIGIN      
        1 ttctgttcct catgcttcgc ccctcgacaa gctcgggagg ctcagcatga ggattccaaa
       61 tttcattcct caccctgagc ttgtcgaagg gtgagttggt aacggttacg aagacagcga
      121 agcgcggtcg ccgctgtaag cggcgcgggt gatcgccttg atggcgtcca ggtccagctt
      181 gcggggattg ttgttgacca ggcgggcggc gccgatggcg ctttccgccg tccagtcctg
      241 cttgtcttcc ggcaggccca gttccttcaa ggtcacaggg atgccgatgt ccttcagcag
      301 ttttgccact tcgtcgatca gcaggtggga caattcctcg tccgtgccgg caagaccgat
      361 ggcgcggccg atctgggcga aggccgtaac gcagttgggg cggttgaact ccatcacata
      421 gggcatcagc agcgccacgc ccatgccgtg cggcgtgtgg gtttcgttgc ccaccggata
      481 ctgaatggca tgcgctgccg ccgtgcccgc cgcgccgaag gcgcagccgg cggacagcga
      541 ggccagcatc atctgttcgc gggcctcgat attcttaccg tccctcaccg cggtgcgcag
      601 ggccttgaag atattctgca gcgccagcag gccgaaggta tcgctgagca cattcttgcc
      661 cacgaacaca ttcttcactg tcagctccgg cgtcacgaca cgcgccgcgg cagtgaagct
      721 ttcaatggca tgggtcaggg cgtcggcgcc gctgaccgcc gtgagcccgg gcgggcagga
      781 gacggtcaat tcgggatcgc acaccgcggc caccggaatc agataggggc tggaaatacc
      841 caccttggtg ccgcgctcgg tatcggcgat caccgccacg ggcgtgactt ccgagccggt
      901 gcccgaggtg gtcggcaccg cgatcaccgg aaacaccggg ccgggaatct tgttctcgcc
      961 ataatagtcg cgcagcgagc cgccatgctt gagcagcacc gacacacatt tggccatgtc
     1021 catgcaggaa ccgccgccga tacccagcac cacgtccggt ttgaagtcgg cacattcgat
     1081 aacgcagccg gaaatgcctt cgatcggcag gtcggcttcg gtgcggtcat agacttttac
     1141 ttcaacgcca ttggccttga ggtcggcgac gatggcgagg aactgggcat cagcccccat
     1201 ccgcgcatcg gtgcagacca gggcgcgctt gccgatctgc gcggtcatca tgcccaaagc
     1261 ggcgcgctgg ccggagccga agatcaccga agcaggcagg cgcagggcgc cgaacaatgg
     1321 ggtcatgata cttttccttt tgaagaatct gccgccagct gctgcagatc gttccacagc
     1381 ccgtcgtcga gatagatgcc gcgcttttcc gattgcgccc tgaccgcatg cgcccggtcg
     1441 cccggcgcca gcacgggatg ggcggcatcg gcgggtgcag cggctcggat gtcgtcgaga
     1501 tagtgggtca ccagcgcgcg ggcggcatcg gcatgcggcg gcgcgatgac gatgaagagg
     1561 tcgcccttgt tggagacatt cacagaatcc aaggtgccct tcacatcggt gccgatggcc
     1621 gaggcggcca ggctggccac cagcacttca aaggcgatac ccagggcgta gcctttgggc
     1681 ccgccgaagg gcgcgatggc gcctttcttg gcagcggcgg cgtcggtggt gggatcgcca
     1741 ttctcgtcca gcgcccagcc tagcgggatc ggcgcgccgc gattggcatg gtcgtgaatc
     1801 ttccccatcg agaccaggcc ggtcgccatg tccagcacca tgggggtggg atcagcaggc
     1861 acgccgatgg cgatgggatt ggtgccgatc atcgccttgc gtccgcccca gggatgcacc
     1921 agcgcttcgg aaatggtcag cgcgatgcag gtcaggccgc cggttgcgac atgctcggca
     1981 taataggcca gcgcgcccag atgattggtg ttgcggatgg cggcgatggc gatgccgtct
     2041 tcccgggcgc gcggaacgat ggcgtccagc gctgccatcg cgacgacagg accaaggccg
     2101 cgcatcccat cgacgctgag gaagctgcgc gccgtccaac tctgctcgcc ggtaacgccg
     2161 ggcacggtca gcccagcatg gatgcgctcg atcacccggc gcaggcgcag aaagccgtgc
     2221 gaaggaatcg cccgcatctc cgcttccagg aacaggccgg cctgggtccg ggcatggtcg
     2281 gccggcacgc cattggcgag caggatgccc tcggccagct tgcggacttc ctcgataggg
     2341 accagcacag atcaaatatc ctataggatc ggcggaccgt atggattata gtccgtccgg
     2401 tcaacagcag aatccagcct ttctgtgaga agttcccgtc atgtcagcag tggaagcggt
     2461 gccggatcgg cagattgttc ggccctcggg cctggcggag gaagtctatc gccgcatccg
     2521 ggccgacatc atgtcactca ggctgccgcc cgacacccgc gtgtcggtgg acagcctggc
     2581 gcgcgagttg ggggtgtcgc agaccccgat ccgcgaggcg ctgtcgatgc tggaagccaa
     2641 cggcctggtc agcaagcgcc acttcgccgg ctatgccacc agcccacgca tggaccgcgc
     2701 ccagttggat gagctgttcg aattccgcct gctgatcgag ccgcatgccg cgcgcaaggc
     2761 ggccgaggcg atggccgatg ccgacatggc ggtgctttcc agcggcgagc tggcgtcgtc
     2821 gcatgacgtc tttgccgaca tggacaccga attccaccgc ctgatcgcgc aaggcgcggg
     2881 caaccatctg atcgcggatt cactggcccg gctgcacatc catgtccaca tcttccgctc
     2941 ctgctttcgc agcgagatcg ctgaggaagc ggtgcatgaa catgacgcgg tgattgccgc
     3001 gatccgcaag cgcgacggcg cggcggcgga agcggccatg cgccgccata tcgagcgctc
     3061 ttacgggcgg ctgcgggatt tcattaaaga atgaactgag ccttcaccct ccccttgagg
     3121 aagggtcgaa atttgcgaag caaatttcgg ggaggggtca agctgcgcca gcggacccct
     3181 ccccgaaaaa ttctcgcgcc gctcgaattt ttcgaccctc cctcaagggg agggttgaat
//
LOCUS       DATMDK010000232         2495 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_3316049,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000232 DATMDK010000000
VERSION     DATMDK010000232.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2495)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2495)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2495
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3316049"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            88..705
                     /gene="serS"
                     /locus_tag="VNN98_04485"
     CDS             88..705
                     /gene="serS"
                     /locus_tag="VNN98_04485"
                     /EC_number="6.1.1.11"
                     /inference="COORDINATES: protein motif:HMM:TIGR00414.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004828 - serine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006434 - seryl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine--tRNA ligase"
                     /protein_id="HWM61382.1"
                     /translation="MISGFWLIPTAEVPLTNYVAEEILNEAELPLRFTAFTPCFRAEA
                     GSAGRDTRGMIRMHQFSKVELVSITTPDQSDAEHERMTDAAQEILKKLDLAHRVVSLC
                     TGDMGFSAQKTYDIEVWLPGQNAFREISSCSNCGDFQARRMNTRFRNAEGKVQGPVHT
                     LNGSGLAVGRTLVAILENYQQADGGVAIPDALQPYMGGKKLIAKL"
     gene            856..1620
                     /gene="surE"
                     /locus_tag="VNN98_04490"
     CDS             856..1620
                     /gene="surE"
                     /locus_tag="VNN98_04490"
                     /EC_number="3.1.3.6"
                     /inference="COORDINATES: protein motif:HMM:NF001490.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008252 - nucleotidase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5'/3'-nucleotidase SurE"
                     /protein_id="HWM61383.1"
                     /translation="MRILVTNDDGIHSPGLVVAEKIARAISGDVWVVAPENEQSGASH
                     SLTLTSPLRLRRIEERRFAVSGTPTDCVMMACLHILKAQPPELILSGINWGSNLADDV
                     TYSGTIAGAMEGCALGIPSIALSQGYDEGDRQAIDWAAGEAHGAGIVRKLVAAGWPAG
                     TLINVNFPGCPADQVKGVKVVPQGSYDLQSTEIEERTDARQRAYYWIGLRRRKSTPPS
                     DSDVGAVYDNYIAVTPLHLNLTEPEVLVSMRAALTP"
     gene            1776..2444
                     /locus_tag="VNN98_04495"
     CDS             1776..2444
                     /locus_tag="VNN98_04495"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013700.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M23 family metallopeptidase"
                     /protein_id="HWM61384.1"
                     /translation="MGQKIAFVVFAVMASPLVAGCMEDSPRTHLDWGVNTKVVHHVAA
                     QGGAKTYAYEEKDARPSPRPAPNYVTRNVTPYTPVTSQPLEPIGPAAGAPAFAWPVSG
                     RVISDFGATANGGKNDGINIATALDAPIHASASGTVTYAGDELKNYGNLVLVKHAGGY
                     TTAYAHADRLMVARGDFVARGQVIGYSGQTGDVTSPQLHFEIRSATTPVNPRAYLASS
                     TASN"
BASE COUNT          457 a          782 c          765 g          491 t
ORIGIN      
        1 tctgcggagg aatctctaac ctttgatacg ggggaggcgc gacatttcac ggtgaagggc
       61 gttcgtcgct ttgaccaact taaagatttg atctctggct tttggcttat tcccaccgcc
      121 gaagtgccgc tgaccaacta tgtcgcggaa gaaatcttga acgaagccga gctgccgctg
      181 cgctttaccg ccttcacgcc ctgtttccgc gccgaggctg ggtcggcggg cagggatacg
      241 cgcggcatga tccgcatgca ccaattctcc aaggtggagc tggtctccat caccaccccg
      301 gaccagtccg acgccgagca tgagcgcatg accgatgcgg cccaggaaat cctgaaaaag
      361 ctggatctcg cccatcgcgt ggtgagcctg tgcaccggcg acatggggtt cagcgcccaa
      421 aagacctatg acatcgaagt ctggctgccg gggcagaatg cgttccgcga aatttcctcc
      481 tgctccaact gcggcgattt ccaggcgcgg cggatgaaca cccgcttccg caatgccgag
      541 ggcaaggttc agggcccggt gcacaccttg aacggctccg gcctggcggt gggccgcacc
      601 ctggtcgcca ttctggaaaa ttatcaacag gccgatggcg gcgtcgccat tccggacgcg
      661 ctgcagcctt acatgggcgg caagaagttg atcgcaaagc tctagggtct ggattgagtt
      721 gctgacgaaa atttcgggtg ggccacccag ttgggttcgt gatcgttttg aaagaaaagt
      781 gctggtgtca cctgggtggc ccgcattcgc gggccatgac agtttggata gagttttaat
      841 gaagagcgaa aattgatgcg tatattggtc accaatgacg acggcatcca ttcgccgggg
      901 cttgtcgtcg ccgaaaagat cgcccgcgcc atctcgggcg atgtctgggt ggtggcgccg
      961 gaaaatgaac agtccggcgc ctcccattcg ctgactttga cctcgccgct ccggctgcgg
     1021 cggattgagg agcgccgctt cgcggtcagc ggcacgccca ccgattgcgt gatgatggcc
     1081 tgcctgcaca ttctgaaagc ccagccgccg gaactgatcc tgtcgggcat caattggggc
     1141 tccaacctgg ccgacgacgt cacctattcc ggcaccatcg ccggcgccat ggaaggttgc
     1201 gctctgggca ttccttccat cgctttgtcg caaggctatg acgaagggga ccgccaggcg
     1261 atcgactggg cggcgggcga ggcgcatggc gcgggcatcg tgcgcaaact ggtggcggcg
     1321 ggctggccgg ccggcacctt gatcaatgtg aacttcccgg gctgcccggc agaccaggtc
     1381 aagggtgtga aggtcgtgcc gcagggcagt tacgatctgc agtccaccga gatcgaggag
     1441 cgcaccgacg cccgccagcg cgcctattat tggatcggcc tgcgccgccg caaatccacc
     1501 ccgccgtccg acagcgatgt gggcgcggtt tatgacaatt acatcgcggt gaccccgctg
     1561 cacctgaacc tgacggagcc cgaggttctg gtcagcatgc gcgcggccct gacgccgtaa
     1621 gaatgtgtta acggttccgg cgcgcgctcc cggtttgcct ggcttttggc tgcaaagttc
     1681 cacgggaacc cgcctcttcc cggcttgatg gttaaaccct tctcaacttt tggccgccat
     1741 gatccgtttc gagacagtgc agaaggcaca gccccatggg tcagaagatc gcttttgtcg
     1801 tgttcgccgt gatggcgtcg ccgctggttg cgggctgcat ggaagactcg ccgcgcaccc
     1861 atctggattg gggcgtcaac accaaggttg tgcaccatgt cgctgcccag ggcggcgcca
     1921 agacctatgc ctatgaggaa aaggatgcac gcccgtcacc gcgtcccgcg cccaactatg
     1981 tcacccgcaa cgtcacgccc tatacgccgg tcaccagcca accgctggag ccgatcggtc
     2041 ctgccgcggg cgcgcctgcc tttgcctggc cggtcagcgg cagggtgatt tccgatttcg
     2101 gcgccaccgc caatggcggc aagaatgacg gcatcaatat cgccaccgcc ctggacgcgc
     2161 cgatccatgc ctcggcgtcc ggtaccgtca cctatgccgg cgacgagctg aagaattacg
     2221 gcaacctggt gttggtgaaa catgccggcg gctacaccac cgcttatgcc catgccgacc
     2281 gcctgatggt cgctcgtggc gatttcgtgg cacgcggcca ggtgatcggc tattcgggcc
     2341 agaccggtga cgtcaccagc ccgcagctgc atttcgaaat ccgttcggcc accacgccgg
     2401 tcaatccgcg cgcgtatctg gcttcgtcca cggcgagtaa ttagagccgc ttgtcatcaa
     2461 atctgctttc cttccctctc cccttgaggg agagg
//
LOCUS       DATMDK010000233         5722 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1019326,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000233 DATMDK010000000
VERSION     DATMDK010000233.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 5722)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5722)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5722
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1019326"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..739)
                     /locus_tag="VNN98_04500"
     CDS             complement(<1..739)
                     /locus_tag="VNN98_04500"
                     /inference="COORDINATES: protein motif:HMM:NF024753.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-binding-like beta-propeller repeat protein"
                     /protein_id="HWM61385.1"
                     /translation="MTKFWLRPLLLASICLTLGAAAGAQDRVLLRADSDNWRLHGRTY
                     DNRRFSPLTQINKDTVGQLALIHTLHTGVTNSFEDTPLEVGGVLYTVTATNHVSAWNA
                     VTGQQIWAWQPEKLDFTEACCGPQARGVALAYGKVYTALFDGHLVALDAKTGKLVWET
                     DPAKMHPEPKQYYTYTQAPQVYEGMVIVGTAGAEYETRGMVEAYDAQSGAKIWEFRTT
                     AAPDEPGGDTWHGDAWKFGGGSVWNTPA"
     gene            834..2450
                     /locus_tag="VNN98_04505"
     CDS             834..2450
                     /locus_tag="VNN98_04505"
                     /inference="COORDINATES: protein motif:HMM:NF024753.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-binding-like beta-propeller repeat protein"
                     /protein_id="HWM61386.1"
                     /translation="MSEKTIVWMLALLSPAASQAQASDWLTFGYDQQRSGWNAAETAL
                     SPANVSRLKLLWSTQLSTPPQDVALSTLTSPLAVEGVETTQGKKNLLLTVGIDDTIFA
                     IDADSGKIVWQKTFPNLGKPLRAATTNCANTEQATPVIDKDASTIYFTTSDGKLRGLS
                     LAAGEERLMPMPFVAPYSRNWSLNLIHGVIYTAAGRGCGGDAAQPIEPGSVSAMDISD
                     PQHPQLSRFLTGQGRPAGPWGRGGPVAGPKGVYVQTADGNRDAAGGIFGNAVIAVTPK
                     AYGIADSFTPPSWKNLNAKDLDLGSGGPVIFSFKNRILLATSSKEGVVYVLDAKNLGG
                     GAAADHSKALYASPRLGNDEEKYYGHGVWGEISTYQDAQGARWLYVPMWGPPGKDGFQ
                     FPRSYGPAPHGSIMALQVVENAGGLALTPQWMSRDLAVPDNVAIAGGVVYAVQTGEQT
                     LQHMGNPEEHGRPVNGGPAETIAGLAKFRSTPLTNMVLYALDAQTGKTLYSSGRLLTD
                     WVHFNQPVVAMGKVFLVSHDAHVYAFGLRR"
     gene            complement(2644..4764)
                     /locus_tag="VNN98_04510"
     CDS             complement(2644..4764)
                     /locus_tag="VNN98_04510"
                     /inference="COORDINATES: protein motif:HMM:NF024753.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-binding-like beta-propeller repeat protein"
                     /protein_id="HWM61387.1"
                     /translation="MTKLLAASIFTTALLGASAVALENGPFTAEQAGGGRALFVANCA
                     SCHGARLQGAGEAPPLAGSTFMAAWGNRSTEELYNLVKASMPYGNGNSLDAATYRSIV
                     AYVLSANGAKPGAVALTGNETVRIAAIADGKMPVIADAPAPAAGAARPATSYPPGRFG
                     VTVAGSLKSYDPVTDSMLAHPKDADWLMYRRNYQGWSHSPLAQVTTGNVKNLQLAWSW
                     AMNDGGASEVTPIIHDGVMFLSNVANTVQALNAATGELIWENRIGPAPTRAYGATRSL
                     ALYGDKVFVPTTDAKLYGLDAKTGKIVWQTVIEDAKEGYSNTGGAIAIKGKILVGLTY
                     CNRYETKHCFISAYDADTGKVAWRFKTIALKGEPGGDTWNNLPDEFRQGAETWIAGTY
                     DPDLNTTYWGTAQSKPWTRASRDSGAGATLYANSTLALDPDSGKLKWFYSHAPGENFD
                     LDEVFERVLVDHGDSKDVLTIGKVGILWKLNRVTGKYEDSAQTLFQNVFDKIDPKTGI
                     PTYRKDVQAAKVGDWISSCPGPAGGHDWPASSYDPRNDLMVIPLHQSCVLMRAEPMEK
                     KIGVGGDAGSQRLFEMPGTDGNLGKLTAYNTKTMKALWSFQQKAPFLTGVLTTDGGVG
                     FVGDFDRRFRAIETLTGKTLWQTRLPTSVQGHVVSYAVDGKQYIAVETGLGGGSPVGK
                     PTTLMPGVHHPNNGNGIFVFALPD"
     gene            complement(4761..5249)
                     /locus_tag="VNN98_04515"
     CDS             complement(4761..5249)
                     /locus_tag="VNN98_04515"
                     /inference="COORDINATES: protein motif:HMM:NF019095.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CHRD domain-containing protein"
                     /protein_id="HWM61388.1"
                     /translation="MKLYCCVALALMVAPALAAESFETRLSPSPLTDGTRINVTGEGE
                     VRVSLDGNKLTVSGDFHGLASGATTAALYDGLGIAIPGPKAFDLTATPSMAGTLSGNV
                     TLTAKQAAALRAGHFYVQIDSRLAPDGNLTGWLLPPHPHLAQDEPVAGPGVMPQFDVK
                     QK"
     gene            5418..>5722
                     /locus_tag="VNN98_04520"
     CDS             5418..>5722
                     /locus_tag="VNN98_04520"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HWM61389.1"
                     /translation="MDLRLLIQRALGLHQQGQLDQAAELYGQILQQEPENAPALQLLG
                     VLRGQQGRNVEAIRLIEAALAIQPRDFGALANYAQLLTASGRPQDALGIFDKALAIKP
                     "
BASE COUNT         1055 a         1792 c         1785 g         1090 t
ORIGIN      
        1 ccgcgggcgt gttccacacc gagccgccgc cgaacttcca ggcatcgccg tgccatgtgt
       61 caccgcccgg ctcatccggc gcggcggtgg tgcggaattc ccagattttt gcgccgcttt
      121 gcgcgtcata ggcttccacc atgccgcggg tttcatactc cgccccggcg gtacccacga
      181 tcaccatgcc ttcataaact tgcggcgcct gcgtataggt gtaatactgc ttgggttcgg
      241 ggtgcatttt ggcgggatcg gtttcccaca ccagctttcc cgtcttggcg tccagcgcca
      301 ccagatggcc atcaaacagc gcggtataga ccttgccata ggccagcgcg acgccgcgcg
      361 cttggggccc gcaacaggct tcggtgaagt ccagcttctc cggctgccag gcccaaatct
      421 gctggcccgt caccgcattc caggccgaca catgattggt ggcagtgaca gtgtagagga
      481 caccgcccac ttccagaggc gtgtcctcga aactgttggt gacgccggtg tgcagggtgt
      541 ggatcaacgc cagttgaccg accgtgtcct tgttgatctg ggtcaggggc gagaagcgcc
      601 gattgtcgta ggtgcggcca tgcaggcgcc agttgtcgct gtcggcgcgg agcagcaccc
      661 tgtcctgagc gcccgccgcg gcaccgagcg tcaggcaaat gcttgccagg agaagcggcc
      721 gaagccagaa tttcgtcatc acctgcccct tatgcgtccc gacgcgacta tccaagaagc
      781 aattgtgccg cgcaagtgga cgccatatcg tgatgacggg agccaatccg atcatgtcgg
      841 aaaaaacaat agtgtggatg ctggcgctgc tgagtccggc ggccagccag gcacaggcaa
      901 gtgactggct gacctttggc tacgatcagc agcgcagcgg ctggaacgcg gcggaaaccg
      961 cgctttcgcc cgcaaatgtc agccgcctga aactgctgtg gagcacgcaa ctgtccacgc
     1021 cgccccagga cgtggcgctt tcgaccctga cctcgccgtt ggcggtagag ggcgtggaga
     1081 ctacgcaggg caagaaaaac ctgctgctca ccgtcggcat tgacgacacg attttcgcca
     1141 tcgacgccga cagcggcaag atcgtctggc aaaaaacctt tcccaatctc ggaaaaccgc
     1201 tgcgcgccgc caccaccaac tgcgccaata ccgaacaggc gacgcccgtg atcgacaaag
     1261 acgcaagtac tatctatttc accaccagcg acggaaaact gcgcggtctc agccttgccg
     1321 cgggcgaaga gcgcctgatg ccgatgccct tcgtggcgcc ctacagccgc aactggagcc
     1381 tcaatctgat ccatggcgtc atctatacgg cggcgggccg cggctgcggc ggcgatgcgg
     1441 cgcagccaat cgagccggga tcggtctcgg ccatggatat aagcgatccg cagcatcccc
     1501 aattgtcgcg ctttctcacc ggccaaggcc gtccggcggg accgtgggga cgcggcggcc
     1561 cggtggccgg ccccaaaggc gtctatgtcc agaccgccga cggcaatcgc gacgcggcgg
     1621 gcggcatttt cggcaatgcc gtgatcgcgg taacgcccaa ggcttacggc atcgccgatt
     1681 ccttcacgcc gccgagttgg aaaaatctca acgccaagga tctcgatctg ggttccggcg
     1741 ggccggtgat cttctctttc aagaaccgta tcctgctggc gacatcttcc aaggagggtg
     1801 tagtctatgt gctggatgcc aagaatctgg gcggaggcgc ggccgccgac cattccaagg
     1861 cgctctatgc atccccgcgc ctgggcaatg acgaagagaa atattacggc catggcgtgt
     1921 ggggcgagat ctcgacttat caggacgcac aaggcgcacg ctggctgtat gtgccgatgt
     1981 gggggccgcc gggcaaagac ggtttccagt ttccccgcag ctacggccct gctccgcacg
     2041 gcagcatcat ggcgctgcag gtggtggaaa atgcgggtgg cttggcgttg acgccgcaat
     2101 ggatgtcacg cgacctggcg gtaccggaca atgtggcgat cgcgggtggc gtggtctatg
     2161 cggtacagac cggtgagcag actctccagc atatgggaaa tccggaagaa catggccgcc
     2221 ccgttaacgg cgggccggcc gaaacgatag cgggccttgc caagttccgt tccacgccgc
     2281 tgaccaacat ggtgctgtat gccctggatg cgcagaccgg aaaaacactc tattccagcg
     2341 gcaggctgtt gaccgactgg gtgcatttca accaacctgt cgtggcgatg ggcaaagtgt
     2401 tcctggtctc gcacgacgcc catgtctatg cgtttggtct tcgccgttag agtcgtttcg
     2461 gattgggttt tgcgccccat tgtcacggcc cgggactccg ggccgcccag gtgacgccaa
     2521 tcgcggatac cgaaagatag atctcagcca aatgcttcga cacaggggct gccccacctg
     2581 ggtggcccgc actccggcgg gccatgacac cgagagtgtg actcccttca actcaaaacg
     2641 ccgctagtcc ggcagcgcga agacgaatat cccattgccg ttattgggat ggtggacgcc
     2701 cggcatcaat gtggtcggct tgcccaccgg gctgccaccg ccaaggccgg tttccaccgc
     2761 gatatattgt ttgccgtcca ccgcatagct gacgacatga ccttgcacgc tggtgggcag
     2821 gcgcgtctgc cacaaggtct tgccggtcaa ggtctcgatg gcgcgaaagc ggcggtcgaa
     2881 atcgccgaca aaacccacgc cgccatcggt ggtcaacaca ccagtcagga acggcgcctt
     2941 ttgctggaag ctccacaacg ccttcatggt cttggtgttg taggccgtca gcttacccag
     3001 attgccgtcg gtgccgggca tctcgaacag gcgctgggac ccggcatcgc cgcccacccc
     3061 gattttcttt tccatcggct cggcccgcat caagacgcag ctttgatgca gcgggatcac
     3121 catcaagtcg ttcctgggat catagctgct cgccggccag tcatggccgc cggcaggtcc
     3181 cgggcatgag gaaatccagt cgcccacctt cgcggcctgc acatccttgc gataggtggg
     3241 aatgccggtc ttgggatcga tcttgtcgaa gacattctgg aacagggtct gggcgctgtc
     3301 ttcatacttg ccggtgacgc ggttgagctt ccacaagatg cccaccttgc cgatggtcag
     3361 cacgtccttg ctgtccccat gatccaccag cacgcgctcg aacacttcat ccaggtcgaa
     3421 attctcgccc ggcgcatgac tgtagaacca tttcagcttg ccgctgtcgg gatccagcgc
     3481 cagcgtggaa ttggcgtaga gcgtggcgcc cgcgccgctg tcgcggctgg cccgtgtcca
     3541 gggcttggac tgcgccgtgc cccaataggt cgtgttcaag tcgggatcgt aggtgcccgc
     3601 gatccaggtt tccgcgccct ggcgaaattc gtcgggcaga ttgttccagg tgtcgccgcc
     3661 cggctcgccc ttcagtgcga tggtcttgaa gcgccacgcc actttgccgg tgtccgcatc
     3721 ataggcgctg atgaagcagt gtttggtctc atagcggttg caataggtca ggccgaccag
     3781 aatcttgccc ttgatggcga tggcgccgcc ggtgttgctg tagccttcct tggcgtcctc
     3841 gatcaccgtc tgccagacga tcttgccggt cttggcatcc aagccataca gcttggcatc
     3901 ggtggtgggc acgaacacct tgtcgccgta caaagcgaga gagcgggtgg caccataggc
     3961 gcgggtcggc gccggcccga tgcggttttc ccagatcaac tcgccggtgg cggcgttcag
     4021 cgcctgcacc gtgttggcga cgttggacag gaacatcaca ccatcatgga tgataggtgt
     4081 cacttcgctg gcgccgccgt cattcatcgc ccaggaccag gcaagctgaa ggttcttcac
     4141 attgccggtg gtcacctgcg ccaacggcga atggctccag ccctgataat tgcgacggta
     4201 catcagccag tcggcatcct tgggatgggc cagcatcgaa tcggtgacgg gatcgtagct
     4261 tttcaagctg cctgccacgg tcacaccgaa acgccccggt ggataggagg tggcgggacg
     4321 cgccgcaccg gcggcgggcg ccggtgcgtc agcgatcacc ggcatcttgc cgtcagcgat
     4381 ggcggcgatc cgcaccgttt cgttgccggt aagtgcaacg gcgccgggct tggcgccatt
     4441 ggccgacagg acataggcga caatgctgcg ataggtggcg gcatccaggc tgttgccatt
     4501 gccatagggc atcgacgcct tgaccagatt gtacagctcc tcggtcgagc ggtttcccca
     4561 ggccgccatg aaggtggacc ccgccagcgg cggtgcttcg cccgcgcctt gcagccgagc
     4621 tccatgacag ctggcgcagt tggcgacgaa cagggcccgg ccgcccccgg cctgctccgc
     4681 cgtgaaggga ccgttttcca aggcgacagc gctggcgccc agcagcgcgg tggtgaagat
     4741 cgatgcggcg aggagttttg tcatttctgt ttcacatcga attgcggcat gacgccggga
     4801 ccggccaccg gttcgtcctg ggcgagatgc ggatggggcg gcaacagcca gccggtgaga
     4861 ttgccgtccg gcgcgagtcg gctatcgatc tgcacataga agtggccggc gcgcagggcc
     4921 gcggcttgtt tcgccgtgag ggtgacgttg ccggaaagcg tgcccgccat ggacggggtc
     4981 gccgtcagat cgaaagcctt gggtccggga atggcgatgc ccaacccgtc ataaagcgcg
     5041 gcagtggtgg cgcccgaggc taggccgtga aagtcaccgc tgacggtcag cttattgccg
     5101 tccagactga ctcgcacttc gccttcgccg gtgacattga tcctggtgcc atcggtcaag
     5161 ggcgacggcg acagccgcgt ttcaaaactc tcggcggcca gcgcaggcgc caccatcaaa
     5221 gccagtgcaa cacaacaata gagtttcacg ctttcctccg ccccggcgcg cgggcaccgt
     5281 aaatagcttt cccattccag gcaattggcg ccgaaggtcg cagagccctt tgtgcatttg
     5341 cgaagtgcct gtcgccgatg cattttcgca aatgctgcct gtgtcgctta gactgcgtgc
     5401 cggacattgg ggctttcatg gatttaaggc ttttaattca acgcgccctt ggccttcacc
     5461 agcagggcca actggatcag gccgctgaac tgtacggcca gatactgcag caggagcctg
     5521 aaaacgcgcc agccttgcag ctgctgggcg tgctgcgcgg ccagcaaggg cgcaatgtgg
     5581 aagcaatccg gttgatcgag gccgcgctgg cgatacagcc ccgcgacttc ggagcactgg
     5641 ccaattacgc acaattgctg acggcaagcg gacgtcctca agacgcgctg ggcattttcg
     5701 acaaggcgct ggcgatcaaa cc
//
LOCUS       DATMDK010000234         2077 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_351476,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000234 DATMDK010000000
VERSION     DATMDK010000234.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2077)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2077)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2077
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_351476"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..212)
                     /locus_tag="VNN98_04525"
     CDS             complement(<1..212)
                     /locus_tag="VNN98_04525"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="cytochrome c-type biogenesis protein; required for
                     the transfer of heme to apocytochrome c; Derived by
                     automated computational analysis using gene prediction
                     method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="heme lyase NrfEFG subunit NrfE"
                     /protein_id="HWM61390.1"
                     /translation="MTAEIGQLALVLAFVLAMVQSLVPLWGAARQDPALMGLGRAAAL
                     LQLLFVATAFASLAAGFMAKDFSIALV"
     gene            323..>2077
                     /locus_tag="VNN98_04530"
     CDS             323..>2077
                     /locus_tag="VNN98_04530"
                     /inference="COORDINATES: protein motif:HMM:NF019604.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-binding domain-containing protein"
                     /protein_id="HWM61391.1"
                     /translation="MAEAFQIAIIGSGPAGMSAANRAAARGLSHVLLEKTDHLSDTIY
                     RYQKGKHVMATPVSLTLRSDCSFDAGKREAILQNWNEQTAVAKANIRYKADVKSVTGA
                     KGDFTITLTSGDTIKAETIIMAIGTQGNPNLVRCDGAKLPHVQYQLDDPREYFDEHIF
                     VIGGGDAGIENARGLAEDQAQGNIVTMVNRSKDFSKAKAANVEMLMEAQKAGRISILS
                     EASPSKIEEGWITIETPEGESRLPCNRVIARMGSAAPRGFVESVGATPDPADLDEKGR
                     PKLKGGIQFSSAARDAFPKLTPQFETTVPGVYAIGALAGYPLIKHCMNQGYDVVEFIS
                     GNTELKPADEPLLEARLKDLPVKKSVADWIAFLRDNVEILKGLSPLQMREFLLDCTVK
                     MFKENDVIFERNAIGSSLFGIAGGSVKVEINPQDPSIVIPIAQGSIFGEVGLISGRRR
                     GATIRAGKDCIVVEVPRTAALKLMGSNEEAKKTVNRITTERHLLQIFGSGLQAADIAE
                     ILKSAKVEEIRPGQSVIKEGQDAGEEFLARQPRARIDREPAKGESQEAFAARVAGEKT
                     AEAEKLAALGPEAEALREG"
BASE COUNT          448 a          678 c          631 g          320 t
ORIGIN      
        1 accagcgcga tcgaaaaatc cttggccatg aagccggccg ccagactggc aaaagcggtt
       61 gccacgaaca gcagttgcaa cagggcggcg gcgcggccca gccccatcag cgccgggtcc
      121 tgccgggcgg cgccccaaag cggtacgagc gactgcacca tcgccagcac gaacgccaga
      181 accagcgcca attgtccgat ttcggcggtc atttcagcta ttgcctgtca caccccttcc
      241 gcaaccctag cgtacccagc agggctgtga aataattaaa taatccggcc ttcaggcggg
      301 cttgtgagtg ggcgggaaca gggtggcgga agcttttcag attgccatta ttggctctgg
      361 gccggcgggg atgagcgccg cgaaccgcgc cgccgcgcgc ggtctcagcc atgtgttgct
      421 ggaaaagacc gaccatctct ccgacaccat ctatcgctac cagaagggca agcatgtgat
      481 ggcgaccccg gtcagcctca ccttgcgctc cgactgcagc ttcgacgcgg gcaagcgcga
      541 agccattctg cagaactgga acgaacagac cgccgtcgcc aaggccaata tccgctacaa
      601 ggcggatgtc aaatcggtca ccggcgccaa gggcgatttc accatcaccc tgaccagcgg
      661 cgataccatc aaggccgaaa ccatcatcat ggccatcggc acccagggca atcccaacct
      721 ggtgcgctgc gacggcgcca agctgccgca tgtgcagtat cagctggacg atccgcgcga
      781 atatttcgac gagcatatct tcgttatcgg cggcggcgat gccggcatcg aaaatgcccg
      841 cggcctggcc gaagatcagg cgcagggcaa catcgtcacc atggtcaacc gctccaagga
      901 tttctccaag gccaaggcgg ccaatgtgga aatgctgatg gaggcgcaga aagccgggcg
      961 catctccatc ctgtccgaag cctcgccgtc caagatcgag gaaggctgga tcaccatcga
     1021 gacgccggaa ggcgaaagcc gcctgccctg caaccgcgtc atcgcgcgca tgggctcggc
     1081 cgcgccgcgc ggcttcgtgg aatcggtggg cgccacccct gaccccgccg acctggacga
     1141 gaaaggccgc cccaagctga aaggcggcat tcagttcagc agcgcggcgc gcgacgcctt
     1201 ccccaagctg acgccgcaat tcgagaccac ggtgcccggc gtctacgcca tcggtgcgct
     1261 ggccggttac cccttgatca agcattgcat gaaccaaggc tatgacgtgg tcgagttcat
     1321 ctccggcaac accgagctca agcccgccga cgaacccttg ctggaagccc ggctgaagga
     1381 cttgccggtc aagaaaagcg tggcggactg gatcgccttc ctgcgcgaca atgtcgaaat
     1441 cctcaagggc ctgtcgccgc tgcagatgcg cgaattcctg ctggactgca cggtcaagat
     1501 gttcaaggaa aacgacgtca tcttcgagcg caacgccatc ggctcatcct tgttcggcat
     1561 cgccgggggc tcggtcaagg tggagatcaa cccccaggat ccctccattg tcattcctat
     1621 cgcgcaaggc tcgatcttcg gcgaagtcgg cctgatttcg ggccgccgcc gcggcgccac
     1681 cattcgcgcc ggcaaggact gcatcgttgt ggaggtcccc cgcaccgcgg cgctgaagct
     1741 gatgggctca aacgaagaag ccaaaaaaac cgtcaaccgc atcaccaccg agcgtcatct
     1801 gctgcagatt ttcggctccg gcctgcaggc tgccgacatc gccgaaattc tcaaaagcgc
     1861 caaggtggaa gaaatccgcc ccggccagag cgtgatcaag gaaggccagg atgcgggcga
     1921 ggaatttctc gcccgccagc cgcgtgccag gatcgaccgg gaaccggcca aaggtgaaag
     1981 ccaagaagcc ttcgccgcca gggtggccgg ggaaaagacg gcggaggccg aaaagctggc
     2041 ggcgttgggg cccgaggccg aagcgctgcg cgagggc
//
LOCUS       DATMDK010000235         3865 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2843339,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000235 DATMDK010000000
VERSION     DATMDK010000235.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3865)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3865)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3865
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2843339"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..194
                     /locus_tag="VNN98_04535"
     CDS             <1..194
                     /locus_tag="VNN98_04535"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61392.1"
                     /translation="LAALLAHYAAHHAEGGKLLARFETLYLTGWAPHESQQKPLQPGS
                     AKTRLAQALGTPEHIIKRE"
     gene            complement(181..345)
                     /locus_tag="VNN98_04540"
     CDS             complement(181..345)
                     /locus_tag="VNN98_04540"
                     /inference="COORDINATES: protein motif:HMM:NF016828.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Flp family type IVb pilin"
                     /protein_id="HWM61393.1"
                     /translation="MRNLAFDACDTTAMEYALIASLISIVIVTSVSAMGTKLSTLFAS
                     VTWTPLVTRA"
     gene            complement(342..731)
                     /locus_tag="VNN98_04545"
     CDS             complement(342..731)
                     /locus_tag="VNN98_04545"
                     /EC_number="3.6.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012514.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="(deoxy)nucleoside triphosphate
                     pyrophosphohydrolase"
                     /protein_id="HWM61394.1"
                     /translation="MLVVAVALVDPDGRVLIAQRPEGKSMAGLWEFPGGKIEAGERPE
                     QALIRELEEELGIAVKEACLAPFTFASHTYSACHLLMPLYVCRRWDGVPRPRHHAALK
                     WVRPKDMKDYPMPAADLPLIPMLRDLL"
     gene            830..1252
                     /locus_tag="VNN98_04550"
     CDS             830..1252
                     /locus_tag="VNN98_04550"
                     /EC_number="1.11.1.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017978306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005829 - cytosol [Evidence IEA];
                     GO_function: GO:0004601 - peroxidase activity [Evidence
                     IEA];
                     GO_function: GO:0051920 - peroxiredoxin activity [Evidence
                     IEA];
                     GO_process: GO:0006972 - hyperosmotic response [Evidence
                     IEA];
                     GO_process: GO:0006979 - response to oxidative stress
                     [Evidence IEA];
                     GO_process: GO:0033194 - response to hydroperoxide
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="OsmC family protein"
                     /protein_id="HWM61395.1"
                     /translation="MTTYGTAKWQGGLKDGKGAISTKSGALSDYPYGFASRFEGKPGT
                     NPEELIGAAHAGCFTMALSLILNEAGFTAEEMNTKAEITLEKQADGFAITKSHLTLRA
                     KIPGIDAAKFQELAGLAEKNCPVSKLLKTEITLDAALA"
     gene            complement(1249..2076)
                     /gene="bla"
                     /locus_tag="VNN98_04555"
     CDS             complement(1249..2076)
                     /gene="bla"
                     /locus_tag="VNN98_04555"
                     /EC_number="3.5.2.6"
                     /inference="COORDINATES: protein motif:HMM:NF033103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008800 - beta-lactamase activity
                     [Evidence IEA];
                     GO_process: GO:0030655 - beta-lactam antibiotic catabolic
                     process [Evidence IEA];
                     GO_process: GO:0046677 - response to antibiotic [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class A beta-lactamase"
                     /protein_id="HWM61396.1"
                     /translation="MISRRTMLAGSALLLPSFAHAADASIAALEKQSGARIGVAALDT
                     GSGKRIAWRANERFVMCSTFKLSLAAATLTRADRGAEHLDEMIHYDKSVSLGVSPATL
                     RNVAQGMTVGALCEAAVIYSDNGAANLLLERLGGPAAMTRFWRSIGDTMTRLDNNEPK
                     LNIPDGARNTTAPAAMLGNLKTLLLGEALSAASRARLLGWMQASTTGAGRLHAGLPPA
                     WQWGDKTGTSDARYGLVNDIGIATIPGRSPILMVAYTERSDEKTVAAIGNILAGAFA"
     gene            complement(2093..3376)
                     /gene="argJ"
                     /locus_tag="VNN98_04560"
     CDS             complement(2093..3376)
                     /gene="argJ"
                     /locus_tag="VNN98_04560"
                     /EC_number="2.3.1.1"
                     /EC_number="2.3.1.35"
                     /inference="COORDINATES: protein motif:HMM:NF003802.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004358 - glutamate N-acetyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006526 - arginine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional glutamate
                     N-acetyltransferase/amino-acid acetyltransferase ArgJ"
                     /protein_id="HWM61397.1"
                     /translation="MAKSVKPTRKASKGLAVSPLVSPLAPKTFPKLPPLAGVRLASVA
                     AGVRYAQRTDVLLALLAPGTQVAGVFTISKTASAPVLWCRDKLKGGEARVLVVNSGNA
                     NAFTGKAGQDGVREIANEAAAVARCRPEEVFMASTGVIGEPLPTQKITKVLAGLVAQG
                     AAGNWRAAADAIMTTDTYPKAATATALIDGVKVTLNGIAKGSGMIAPDMATMLSFVFT
                     DANLPASVLQDCLSAGVGPSFNSITVDSDMSTSDTLMLFATGKGGKHAAVAKAADKRL
                     TDFRRALDRVLLDLALQVVKDGEGAQKLIRIDVSGAVSDAAAKQVGLSIANSPLVKTA
                     MAGNDANWGRIVMAVGKSGEAADRDRLKISFGGHVVAEKGMRAAKYNEVAATKAVSGR
                     EVVIAVELGLGSGASRIWTCDLTHGYIDINGSYRS"
     gene            3540..>3865
                     /locus_tag="VNN98_04565"
     CDS             3540..>3865
                     /locus_tag="VNN98_04565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020044535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecA"
                     /protein_id="HWM61398.1"
                     /translation="MLGSLAKSLFGSANERKVKPLWGAVAKINALEGRFAAMSDAELA
                     AMTPAFRARLEKGETLDDLLPEAFAVVREAAKRTLGQRHFDVQLVGGIVLHRGNISEM
                     KTGEGKT"
BASE COUNT          694 a         1212 c         1259 g          700 t
ORIGIN      
        1 ccttggcggc cctgctggcg cattatgcgg cccatcacgc ggaaggcggc aagctgctgg
       61 cgcggttcga gacgctctat ctcaccggct gggcgccgca tgaaagtcag caaaagccgc
      121 tgcaacccgg cagcgccaag acgcggctgg cccaggcgct gggcaccccg gaacacatca
      181 tcaagcgcga gtgactaggg gggtccaggt cacagaagcg aagagggtgg acagtttggt
      241 gcccattgcg ctgacacttg tgacgatcac aatcgagatc aggctggcga tcagggcata
      301 ttccatggcg gtggtgtcgc aggcgtcaaa ggccaggttc ctcacaagag atcgcgcagc
      361 atgggaataa gcggcaagtc ggccgcgggc atggggtagt ctttcatgtc tttgggccgg
      421 acccatttca gcgccgcgtg atggcgcggt cgcggtacgc cgtcccaacg gcggcagacg
      481 tagagcggca tcaaaaggtg acacgcgctg taggtatgcg aagcaaaggt gaatggcgcg
      541 agacaggctt ccttcaccgc gatgccgagt tcttcctcca actcgcggat cagcgcctgt
      601 tcgggccgtt cgcccgcttc gatcttgccg cccggaaatt cccataaccc cgccatgctt
      661 ttgccttcgg gacgttgtgc gatcagcacg cggccgtcag ggtccaccaa tgccaccgca
      721 acgacaagca tcaaagattg cggtgtattc attctggcgt cacatggcta aggtgaagtt
      781 aagcggcatg gttagcatgt cttaagataa tgtacgaaag gagaagagca tgacgacata
      841 tggcacggca aaatggcagg gcggcctcaa ggacggcaag ggcgcgatct cgaccaagag
      901 cggggcactg agcgactatc cctatggctt cgccagccgg ttcgaaggca agcccggcac
      961 caatcccgaa gaactgatcg gcgccgccca cgccggctgt tttaccatgg cgctgtcgct
     1021 gatcctgaat gaggcgggct tcaccgccga agagatgaac accaaggccg agatcacctt
     1081 ggagaaacag gcggacggtt ttgccatcac caagtcgcat ctcaccttgc gggcgaaaat
     1141 ccccggcatc gatgcggcaa agtttcagga actggcgggc ttggccgaga agaactgccc
     1201 ggtgtccaag ctgctgaaga ctgagatcac cttggacgcg gctttggctt aagcgaaagc
     1261 cccagccaga atgttgccta ttgcagcgac cgttttttcg tcgctccgtt cggtgtaggc
     1321 gaccatcaga atggggctgc ggcccggtat cgtcgcgatt ccgatgtcgt tgaccaggcc
     1381 ataacgtgcg tcgctggtgc cggtcttgtc gccccattgc caggccgggg gcagtcccgc
     1441 gtgcaaccgg cccgcgccgg tggtggaggc ttgcatccag cccagcagcc gggcgcgcga
     1501 agccgctgac agcgcctcgc ccagcaacag ggtcttgaga ttgccgagca tggcagcggg
     1561 cgcggtggtg ttgcgcgccc cgtccgggat attgagtttg ggctcgttat tatccagccg
     1621 ggtcatggta tcgccgatgc tgcgccagaa acgagtcatg gcggcgggcc cgcccagccg
     1681 ttccagcagc aggttggcgg cgccattgtc gctgtagatc acggcggcct cgcacagcgc
     1741 accgaccgtc atgccctggg cgacgttgcg cagggtggcg ggcgacacgc ccaaggacac
     1801 gcttttgtcg taatggatca tctcatccag atgttccgcg ccccggtccg cccgtgtcag
     1861 ggtcgcagcg gccagcgaca atttgaaggt ggaacacatg acgaagcgtt cgttggcgcg
     1921 ccaggcgatg cgtttgccgc tgccggtatc cagcgccgcc acaccgatac gcgcgccgga
     1981 ttgcttctcc agcgcggcga tggacgcatc ggcggcatgg gcgaaagacg gcagcagcaa
     2041 agcgcttccg gccagcatgg tacggcgcga gatcatcgaa ctttctccag cctcaggaac
     2101 ggtagctgcc attgatgtcg atataaccgt gggtgagatc gcaggtccaa atccggctgg
     2161 cgccactccc cagccccaat tccaccgcga tcacgacctc gcggccggac accgccttgg
     2221 tggcggcgac ttcgttgtac ttggcggcgc gcatgccttt ttcggccacg acatggccgc
     2281 cgaaggaaat cttcagccgg tcgcggtcgg cggcttctcc gctcttgccc accgccatca
     2341 cgatgcggcc ccaattggcg tcattgccgg ccatggcggt cttgaccagc ggcgaattgg
     2401 cgatcgaaag tccgacctgc ttggcggcgg catcgctcac cgcccccgac acgtcgatgc
     2461 ggatcagctt ctgcgcgccc tccccgtcct tgaccacctg cagcgccaga tcgagcagca
     2521 cccggtccag cgcccggcgg aaatcggtca gccgcttgtc ggcggccttg gcgacggcgg
     2581 cgtgcttgcc gcccttgccg gtggcgaaca gcatcagcgt gtcgctggtg gacatgtcgc
     2641 tgtccacggt gatggaattg aaggacggcc ccacccccgc gctcagacaa tcctgcagca
     2701 cgctggccgg caggttggca tcggtgaaga cgaaactcag catggtcgcc atgtcgggcg
     2761 cgatcatgcc cgagcccttg gcgatgccgt tgagcgtcac cttgacgccg tcgatcaggg
     2821 ccgtggcggt ggcggccttc gggtaggtgt cggttgtcat gatggcgtcg gcggcggcac
     2881 gccagttgcc ggcggcacct tgcgccacca gcccggccag caccttggtg atcttctggg
     2941 tcggcagcgg ctcgccgatc accccggtcg aggccatgaa aacttcttcg ggacggcacc
     3001 tggccacagc ggcggcctca ttggcgatct cccgtacgcc gtcctgtccg gccttgccgg
     3061 tgaaggcgtt ggcgttgccg ctgttgacca ccaggacccg ggcttccccg cccttgagct
     3121 tgtcgcggca ccacagcaca ggggcactgg cggtcttgga aatcgtgaag accccggcca
     3181 cctgggttcc gggcgccagc aaagccagca gcacgtcggt gcgctgggca tagcgcacgc
     3241 cggcagccac ggaggccagc cggacccccg ccaggggcgg cagtttggga aaggtcttgg
     3301 gcgccagggg tgagacgagt ggcgatacgg cgaggccttt tgacgccttg cgagtcggtt
     3361 tcacgctctt ggccatgttt cccccggttt cagggcggat agtgttaaaa atccccggtt
     3421 tgacaagaga ctagcgcgtt cttatgtctc ccgcgcggtc gccatgcgga tttggcggcg
     3481 cttttttgtt tggtccaaga agtgggcacc ccccgttccg gccggatgta gaggatttca
     3541 tgctgggttc gcttgccaaa tcgctgttcg gctcggccaa cgagcgcaag gtcaaaccct
     3601 tgtggggcgc ggttgccaag atcaacgccc tggaaggccg ctttgcggcc atgtcggacg
     3661 ccgaactggc ggccatgacc ccggcctttc gcgcccggct ggaaaaaggc gaaaccctgg
     3721 acgacctctt gccggaagcc tttgccgtgg tgcgcgaagc cgccaagcgc accctgggcc
     3781 agcgccattt cgacgtgcag ctggtgggcg gcattgtgct gcaccggggc aacatttcgg
     3841 agatgaagac cggcgaaggc aagac
//
LOCUS       DATMDK010000236         2994 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_102877,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000236 DATMDK010000000
VERSION     DATMDK010000236.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2994)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2994)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2994
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_102877"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>2994
                     /gene="dnaE"
                     /locus_tag="VNN98_04570"
     CDS             <1..>2994
                     /gene="dnaE"
                     /locus_tag="VNN98_04570"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: protein motif:HMM:NF004226.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0008408 - 3'-5' exonuclease activity
                     [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="DNA polymerase III subunit alpha"
                     /protein_id="HWM61399.1"
                     /translation="RDGGTPAVAVTDTNNLFGVYEIADTMAKAGIQPIVGALLSVEFA
                     GRAIHQTGSRKKPPHLALLVQNEAGYRNLTKLLSAAYLDAEAGDWPHVKAEKLFAHAE
                     GLIALTGGPGGAVNQLLLDGQRDAADAALAKLAAAFVDRLYVELQRHGLAEERAVEDA
                     LLDMAYAKCLPLVATNDVHFGRAKMYEAHDALLCIADGAFVSQDDRRRLTREHRFKTA
                     SEMQAQFADLPEAIENTVEIARRCAFRPVKRKPILPVFVPESGLTAEEELKVQAVEGL
                     ARRLVGAKLAAERKVYDERLDYELGIINRMGFPGYFLIVSDFMKWTRARGIPVGVRGS
                     GASSLVAWALDITNLDPLRFGLFFERFLNPERLSMPDFDIDFCQERRDEVVRYVRDKY
                     GADRVAQIIALGSLQARAAVRDAGRVLQMPLGLVDRIAKLIPNPPGKSISLRDAIESE
                     PRLQTIAEQEPLAQRLFEITQQIEGLYRHASTHPAGLVIGDRPLDEILPLYRDPRSDM
                     PVTQFDYEDAEKAGLVKFDFLGLKTLTVIAKAEELLKRRGIALHTQTIDFDDVNTFEM
                     LSHGDSVGVFQMEGQGMRDLLRKMKPDHINDLVALVALYRPGPMDAIPTYIARKNGKE
                     VVEYLHPLLEPILNETYGVMTYQDDVMRIARELAGYTMGEADILRRAMGKKIPAEMIP
                     QREKFLKGAGEKGIVRSVAEQIFEQAEKFAGYGFNKGHAAAYAQVAYQTAFLKANYPV
                     EFLAASMTLDIGNTDRLNIFRQEAQRLGVKVAPPDINRSEAVFACDAAANTVFYALAA
                     VKGVGKQAMDHVVEIRTRGGKFKSLSDFARRVDPRQVNKRAFENLARAGAFDSLNPNR
                     RQVVESSDRILGGAQAAQRERESGQVSMFGGDNGPSEDLRLAAMPDWPVHERLGEEFS
                     AMGFYLSGHPLDAYGPALKRLGASTYAALLEDRRRGGFKAKIAGTLIKKSERRGRNDQ
                     MYAFVAFSDPTGMFEIMLFPEVLAA"
BASE COUNT          550 a          931 c          971 g          542 t
ORIGIN      
        1 gcgcgatggc gggaccccgg cggtggcggt caccgacacc aataacctgt tcggggtcta
       61 tgagatcgcc gacaccatgg ccaaggcggg catccagccc atcgtcgggg cgctgttgtc
      121 ggtggagttt gcgggccgcg caatccacca gaccggatcg cgcaagaagc cgccgcattt
      181 ggctttgctg gtgcagaacg aggcgggcta ccgcaacctg accaagctcc tgtccgcggc
      241 atacctggat gcggaagcgg gcgattggcc gcatgtcaaa gcggagaaac tgttcgccca
      301 tgccgaaggc ctgatcgcgc tgaccggcgg gccgggcggc gcggtcaacc agttgctgct
      361 ggacggccag cgcgatgcgg cggacgcagc attggcgaaa ctggcggcgg cctttgtcga
      421 tcgtctgtat gtcgagctgc agcgccacgg cctggcggag gagcgcgccg tcgaggatgc
      481 gctgctggac atggcctatg ccaaatgcct gccgctggtg gcgaccaatg acgtgcattt
      541 cggacgcgcg aaaatgtacg aggcccatga cgcgctgctt tgcatcgccg acggcgcctt
      601 tgtcagccag gacgaccgcc gccgcctgac ccgcgagcat cgcttcaaga cggcgtcgga
      661 aatgcaggcc cagttcgccg accttcccga ggcgatcgag aatacagtgg agatcgcgcg
      721 ccgctgcgcc ttccgtccgg tcaagcgcaa gcccatcctg ccggtgttcg tgccggagtc
      781 cggccttacc gcggaagaag aattgaaagt ccaggcggtc gaggggctgg cccgccgcct
      841 tgtgggcgcc aagctggcgg ccgagcgcaa ggtttacgat gagcggctgg attacgagct
      901 gggcatcatc aaccgcatgg gctttcccgg ctacttcctg atcgtgtccg atttcatgaa
      961 atggacccgg gcgcgcggca ttccggtggg ggtgcgcggc tccggcgcct cctcgctggt
     1021 ggcctgggcg ctggatatta ccaatctgga cccgctgcgc ttcggcctgt tcttcgagcg
     1081 cttcctcaat cccgaacgcc tgtcgatgcc ggacttcgac atcgacttct gccaggagcg
     1141 gcgcgacgag gtggtgcgtt atgttcgcga caaatatggc gccgaccggg tggcgcagat
     1201 cattgcgctg ggttcgctgc aggcgcgcgc cgccgtgcgc gacgcgggcc gggtgctgca
     1261 aatgccgctg ggcctggtgg accgcatagc caagctgatc cccaatccgc cgggcaaatc
     1321 catttcgctg cgggacgcga tcgagagcga gccgcgcctg cagaccatcg ctgaacagga
     1381 gcccctggcc caacgcctgt tcgagatcac ccagcagatc gagggtctgt atcgccatgc
     1441 ctccacccat cccgccggcc tggtgatcgg cgaccggcca ctggacgaga ttttgccgct
     1501 ctatcgcgac ccgcgctccg acatgccggt gacccagttc gattacgagg acgcagaaaa
     1561 agccgggttg gtaaagttcg attttctggg attgaagacc ctcaccgtca tcgccaaggc
     1621 ggaggaactg ctgaagcggc gcggcatcgc cttgcatacg cagaccatcg acttcgacga
     1681 tgtgaatacc ttcgagatgc tgtcccatgg cgacagcgtc ggcgtgttcc agatggaagg
     1741 ccaggggatg cgcgatttgc tgcgcaagat gaagcccgac catatcaacg atctggtggc
     1801 gctggtggcg ctgtaccgcc cgggcccgat ggatgcgatt cccacctata tcgcgcgcaa
     1861 gaacggcaag gaggtggtgg aataccttca tcccttgctc gagccgatcc tgaacgaaac
     1921 ctatggcgtg atgacctatc aggacgatgt catgcgcatc gcccgcgaac tggccggcta
     1981 tactatgggc gaggctgaca tcctgcgccg cgccatgggc aagaagatcc cggccgagat
     2041 gattccccag cgcgagaaat tcctcaaagg cgccggtgag aagggcatcg tccgctcggt
     2101 ggccgagcag atattcgagc aggcggaaaa attcgccggc tatggcttca acaagggtca
     2161 tgccgcggct tatgcccagg tcgcctatca gacggcgttt ctcaaggcga attatccggt
     2221 cgaatttctc gccgcctcca tgaccttgga tatcggcaat accgaccggc tcaatatttt
     2281 ccgccaggaa gcgcagcgct tgggcgtgaa agtcgcgccg cccgatatca accgcagcga
     2341 agcggtgttt gcctgcgacg cggcggccaa tacggtgttc tatgccctgg cggcggtgaa
     2401 gggcgtgggc aagcaggcga tggatcacgt ggtggagatc cgcacccggg gcggcaagtt
     2461 caaatcattg tccgattttg cccgccgggt ggacccgcgc caagtcaaca agcgggcgtt
     2521 cgaaaatctc gcccgtgccg gggcctttga cagcctcaat cccaaccggc ggcaggtggt
     2581 agaaagttcc gaccgcatct taggcggcgc gcaagccgcg caacgcgaac gcgaaagcgg
     2641 gcaggtgtca atgtttggtg gtgacaatgg tccgtctgaa gacctgcgtc ttgccgccat
     2701 gcccgactgg ccggtgcatg agcggctggg cgaggaattt tccgccatgg gcttttatct
     2761 gtccggccat ccgctggacg cctatggccc ggcgctgaaa cggctgggcg cctccaccta
     2821 tgccgccctg ctggaggacc gccgccgcgg cggcttcaag gccaagatcg ccggcaccct
     2881 gatcaagaaa tcggaacggc gcggccgcaa cgaccagatg tatgcctttg tcgctttttc
     2941 cgatcccacc ggcatgttcg aaatcatgct gtttcccgaa gtactggccg cctg
//
LOCUS       DATMDK010000237         3773 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1951770,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000237 DATMDK010000000
VERSION     DATMDK010000237.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3773)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3773)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3773
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1951770"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..857)
                     /locus_tag="VNN98_04575"
     CDS             complement(<1..857)
                     /locus_tag="VNN98_04575"
                     /inference="COORDINATES: protein motif:HMM:NF012694.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system F family protein"
                     /protein_id="HWM61400.1"
                     /translation="MTQYRYRAFLARTGEVKLGVIEGVSRAAVLDALRRSGLLPIDAV
                     EGGAAGKTRELPVTANAAARKAIPNAISELSVMLGAGLPLDRALGIVVDHVVQPQLRA
                     AFAALRGRVKSGVPLARAMEEAGGFFSPMTCTLAEAGEASGRLGPTLARLAEALERAE
                     GMRQTVQSALIYPAILLIIAVAVILVMLLFVIPQFEGVITDLGGKVPFATAMVLSVSR
                     FVRSYGLVILLALIGFALFVRQALRQPAIRESFDRAVLRLPLLGDLVARAETARFART
                     LAGLVDSGVP"
     gene            complement(854..2530)
                     /locus_tag="VNN98_04580"
     CDS             complement(854..2530)
                     /locus_tag="VNN98_04580"
                     /inference="COORDINATES: protein motif:HMM:NF012652.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GspE/PulE family protein"
                     /protein_id="HWM61401.1"
                     /translation="MNAIPVPGLADLLEASGLIAPETLARARLVQAETSEPLDTVLTR
                     LGMVSEQALAEGMAHALSLPFARAQDFPAAPLEIGDISVRFLREVRALPFRQDSEGID
                     VAFADPFDPYPASALQFTLGRSVRPHVARASDLEQALDRLYAGPGQDNGAPDEAADNA
                     DLEHLKDLASDAPIVRAVHGLIARAVEARASDIHIEPTEDCLKIRLRVDGALQEVDSW
                     PAQSRATVISRIKVMSGLDIAERRLPQDGRLRFAVRGQSIDFRVATAPTVHGESVVLR
                     ILDRSSLSLDFAALGFDQALLQTYLKVLQKPHGILLVTGPTGSGKTTTLYASLTTLNT
                     PDRKILTVEDPIEYRLAGINQTQVKPQIGLSFAAALRSFLRHDPDVIMVGEIRDIETA
                     QVAVQAALTGHLILSTLHTNDAASAVTRLLDMGVEPYLISSVLNAVLAQRLVRRLCPD
                     CRQAYAPQPEALESLGLGHERPGSIRFFRPAGCPACRGTGFRGRLALIEFLPMSESIA
                     RLALARAEARQIVRAAVEEGMRTIFDDGLAKARAGETTIEEVLRVTQEGP"
     gene            2529..2744
                     /locus_tag="VNN98_04585"
     CDS             2529..2744
                     /locus_tag="VNN98_04585"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61402.1"
                     /translation="MTVNAPSVSSLLKLAEFEICARKSGRNRKNQAPQVKISASKGRT
                     TFEYLMLAANRFGSNVNKNVTNDAAHQ"
     gene            3216..>3773
                     /locus_tag="VNN98_04590"
     CDS             3216..>3773
                     /locus_tag="VNN98_04590"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61403.1"
                     /translation="MLSFKPNLLAGASAFLLAAAFSAPAYAYDVDGGGSSLIAPYLAQ
                     AFGCFVGSNPTTPYATSVISNPAVASDHAHRYTSTGASTGVTVASCPLAASSTNSSDS
                     FNYLQSSSTGGIGGWSTQTGANLGAYPSGLSAFGTVTYGASDAALTTGTGGEIDVFAN
                     GGTDSVTGFQFAAPFVTPTGAQHTSP"
BASE COUNT          755 a         1225 c         1115 g          678 t
ORIGIN      
        1 ggcacgccac tgtccacaag gcccgcgagc gtccgcgcga accgcgccgt ctcggcgcgg
       61 gccaccagat cgcccagcag gggaaggcgc agcaccgcgc ggtcgaagga ctcccgtatc
      121 gccggctggc gaagcgcctg acgcacaaac agcgcgaagc caatcagggc cagcagtatg
      181 acaagaccat aggaccgcac aaaccggctg acgctaagga ccatggcggt tgcgaatggc
      241 accttgccgc ccagatcggt gatcacgcct tcaaactgcg gaatgacaaa cagcagcatc
      301 acgagaatga cggcgacggc aattatcaac aggatcgcgg ggtagatcag cgcggactgc
      361 accgtctgac gcatgccttc cgcccgctcc agcgcttccg cgagacgggc aagggtagga
      421 cccaaccgcc cgctggcctc tccagcctcg gccaaagtac aggtcattgg tgaaaagaat
      481 ccgcccgctt cctccatcgc gcgcgccagc ggcacgcccg acttgacccg gccacgcaaa
      541 gccgcgaacg ccgccctgag ctgcggctga accacatgat cgaccacgat gcctagggcg
      601 cggtcgagcg gcaggcccgc gcccagcatc accgacaatt cgctgatggc attgggaata
      661 gccttgcggg cggcagcgtt ggcggtgacc ggaagctcgc gcgtttttcc agccgcgccg
      721 ccttcaaccg cgtcgatggg cagcaggccg ctgcggcgca aggcatcgag caccgcggcc
      781 cgcgagacgc cttcgataac gccgagcttc acttcacccg ttcgggccag gaaagcgcga
      841 tagcgatact gcgtcatggc ccctcctggg tgacgcgcag cacttcttct atggtcgttt
      901 cacccgcgcg ggccttggcg aggccgtcat cgaagatggt ccgcatcccc tcttccaccg
      961 cagcccgtac gatctgccgg gcttcggccc gggccagcgc caggcgcgcg atcgactcgg
     1021 acattggcag aaattcaatg agggccagtc gcccgcggaa ccctgtgccg cggcaggccg
     1081 ggcagccggc cggtcggaag aagcggatgg acccaggccg ttcatggccc aggcccagag
     1141 actctagggc ctccggctgc ggcgcatagg cttggcggca atccggacac agccggcgca
     1201 ccaggcgttg cgccagcacc gcattgagca ccgatgagat cagatagggt tccaccccca
     1261 tatcgagcag ccgtgtcacc gcgctggcgg catcgttggt gtgcaaggtt gaaaggatca
     1321 ggtggccggt gagcgccgcc tgcaccgcga cctgagcggt ttcaatatcg cggatctcgc
     1381 cgaccatgat gacgtccggg tcgtggcgca ggaaagagcg cagcgccgcg gcgaaactca
     1441 gcccgatctg cggcttgacc tgggtctggt tgatgccggc gagccggtat tcgatggggt
     1501 cttcgaccgt gagaatcttg cgatcgggcg tattgagggt cgtcagcgac gcatagagtg
     1561 tcgtcgtttt gccgctgccg gtagggccgg tgaccagcag aatgccgtgc ggcttctgca
     1621 gtacctttaa gtacgtctgc aacagcgcct ggtcgaaacc caaagcggcg aaatccagcg
     1681 acaggctgga acggtcgaga atgcgcaata ccacgctttc gccatgcacg gtgggcgctg
     1741 tggcgacgcg gaaatcgatt gactggccgc gcacggcaaa ccgcagacgt ccgtcctgtg
     1801 gcagacgccg ctccgcgatg tccaggccgg acatcacctt gatgcgggat atgacggtcg
     1861 cccgcgattg cgccggccag gaatccactt cctgcaatgc gccatcgacg cgcaaacgga
     1921 ttttcaagca atcctcagtc ggttcgatat gaatgtcgga ggcgcgcgct tccacggcgc
     1981 gggcgatcag gccatgcacc gcccgcacga tgggggcatc gctggccagg tccttgagat
     2041 gctccagatc ggcattgtcc gccgcttcgt ccggcgcccc attgtcttgg ccaggcccgg
     2101 cataaagacg gtcgagggct tgttccaaat cgctcgcccg agcgacatgc gggcgcaccg
     2161 aacggccaag cgtgaactgc agcgccgagg cggggtaggg atcgaaggga tcggcgaatg
     2221 cgacatctat accttccgaa tcttgccgga acggcaaggc tcgtacttcg cgcaggaagc
     2281 gcacggaaat atcgccgatc tccagtggcg ccgccggaaa atcctgggcg cgcgcaaacg
     2341 gcaacgagag cgcatgcgcc atgccttctg ccagcgcctg ttccgacacc atgcccagcc
     2401 gggttaatac cgtgtccagt ggctcgctgg tctcggcctg caccagccgc gcgcgcgcca
     2461 gcgtctcggg cgcgatcagc ccgctggcct ccagcagatc ggccaagccc ggcacaggga
     2521 tcgcattcat gactgtcaat gcaccctccg tgtcctctct tttgaaactg gcagaatttg
     2581 aaatctgcgc gcggaaaagt ggcaggaatc gaaaaaatca agcgccgcag gtgaagattt
     2641 ctgccagtaa aggtcgcacc accttcgagt atttgatgct agcggcgaac cgttttggca
     2701 gcaacgtaaa taaaaacgtc acgaatgacg cggcgcatca gtaaagacgg atgcgcgctc
     2761 actgtgcagt cttttgtata catctcaaag gcggccggcg ctgagatcac gaacgaggca
     2821 cgatgaaatt tcaaaacaaa tgcgcagctt ttttcgccgt gagtcgcact cgataaaatc
     2881 gtgcgaaccg attcagacga ataaccggct atttcattgg atcatattga tacgagaatg
     2941 tttgtcggac atttttgtga atgcgaactt ccgcccacca ttccatttca tgccacaatc
     3001 caacaccacg cagccacatt tcgcagcttt gcgattgtcg cgccgatttt ccttaaatag
     3061 ggttcacgcg cttctacagc agttcatgcg taaccgatct cgttacttcc gattacttcg
     3121 gcagtacgag cataggcaag actttgcctg cacttcgcat tcggcctgct gtggaagcaa
     3181 ctgagaaacc aacccaacca atcggagaac tcaccatgct ttccttcaaa cccaaccttc
     3241 tggcaggcgc ttcggcgttc ctgctggccg cagccttcag cgccccggca tatgcgtatg
     3301 acgtcgatgg cggcggttcg tcattgatcg caccgtatct tgctcaggct tttggctgct
     3361 ttgtcggctc caacccgaca acgccctatg ccaccagcgt catcagcaat ccggcggtgg
     3421 catcggatca cgcccaccgc tacacctcta ccggtgccag caccggcgtc acggtagctt
     3481 cctgccctct ggccgcctcg tccacgaact cgagtgattc tttcaattac ttgcagtcca
     3541 gctccacggg cgggatcggc ggctggtcca cccagaccgg cgccaatctc ggcgcctatc
     3601 cctccggcct gtcggcgttc ggcactgtca catatggcgc gtccgatgcg gctctgacca
     3661 ccggcactgg tggtgaaatc gatgtctttg ccaatggcgg cacggattcg gtgacgggct
     3721 tccagttcgc cgctcccttt gtcacgccca ccggcgccca acacaccagt ccc
//
LOCUS       DATMDK010000238         3486 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_352154,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000238 DATMDK010000000
VERSION     DATMDK010000238.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3486)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3486)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3486
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_352154"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1352)
                     /locus_tag="VNN98_04595"
     CDS             complement(<1..1352)
                     /locus_tag="VNN98_04595"
                     /EC_number="3.2.2.4"
                     /inference="COORDINATES: protein motif:HMM:NF006142.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008714 - AMP nucleosidase activity
                     [Evidence IEA];
                     GO_process: GO:0009116 - nucleoside metabolic process
                     [Evidence IEA];
                     GO_process: GO:0044209 - AMP salvage [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AMP nucleosidase"
                     /protein_id="HWM61404.1"
                     /translation="MTTASHGPKYGGVPATELVRCASPQAAIDLLIELYELAIARIEQ
                     DFERFAKGDIGEYKKQVYPYLCIEVETVTTPSHSTLAFGKIPRPGLYGTTITAPRLFR
                     TYLIEQLEILTANAKGDLYVGKSHTPIPLTFAVERAAAQMNAAQRIELARHFPLPRLD
                     AAHDTIADGGRWTGAGTGPLSLFSAERVDYSLHRLRHYTGTDPQDFQSFVLFTNYQRY
                     IDEFIDYGLKELEAGRAVRFIEPGGRVTEKGKAPSRPPLTKMPQMPAYHLVQEGGDGI
                     TLVNIGIGPSNAKNITDHIAVLRPHVWIMVGHCGGLRASQRLGDYVLANAYLRDDHVL
                     DSVLPLAIPVPTIAEVQLALAQAVGDVTGLKGTVLKGRLRTGTVVTTDDRNWELRFGE
                     LATRFNQSRAIAIDMESATLAANGYRFRVPYGTLLCVSDRPLHGEIKLPGMADAFYEE
                     R"
     gene            complement(1361..2569)
                     /locus_tag="VNN98_04600"
     CDS             complement(1361..2569)
                     /locus_tag="VNN98_04600"
                     /EC_number="5.4.2.7"
                     /inference="COORDINATES: protein motif:HMM:NF003766.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0008973 - phosphopentomutase activity
                     [Evidence IEA];
                     GO_process: GO:0009117 - nucleotide metabolic process
                     [Evidence IEA];
                     GO_process: GO:0043094 - cellular metabolic compound
                     salvage [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopentomutase"
                     /protein_id="HWM61405.1"
                     /translation="MRALIAVLDSFGLGATPDAEHFGDAGANTYGHIVQACAEGRADD
                     TRRSGPLAIPNLLSLGLGLAASRADPRVAPLQNGPVSGRYGAASELSRGKDTPSGHWE
                     MMGLPVEYDWGYFPQTVPTFPKELTDAFIARARLPGILGNCHASGTVIIEQYGEEHIR
                     TGKPICYTSADSVFQIAAHETHFGLERLYEISHIARELVDPYNVGRVIARPFIGETAG
                     AFKRTYNRHDYSMPPHRPTLLDIAKDDGREVTGIGKISDIFAGRGLTRNIKTEGNDDT
                     FTRLIECARTAPDGSITFANFVDFDQSYGHRRDIAGYAAALEAFDRQIPELKASLSDG
                     DLVVFTADHGCDPTWPGSDHTREYVPVIAFGPGIPAGDIGQRNTFADIGQSIAQHLGL
                     PPMDVGTSFL"
     gene            2719..>3486
                     /locus_tag="VNN98_04605"
     CDS             2719..>3486
                     /locus_tag="VNN98_04605"
                     /EC_number="2.4.2.1"
                     /inference="COORDINATES: protein motif:HMM:NF006054.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004731 - purine-nucleoside phosphorylase
                     activity [Evidence IEA];
                     GO_process: GO:0009116 - nucleoside metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="purine-nucleoside phosphorylase"
                     /protein_id="HWM61406.1"
                     /translation="MADIVADGIAAVKAAYSGAFPKTALILGSGLGLFADRLQSATDI
                     SYGDLPGFPVPTVAGHAGQLRIGTVAGTHLACLMGRFHAYEGHPAAALAVPIRILKGL
                     GVERLILTNAAGGLKRDLPAGTLMIVEDHINFSGQNPLIGPNDERVGPRFFDMTYAYD
                     PDLRARLKAAAAKAGVAVKSGVYLYALGPNFETPAEVRMFAQWGSDAVGMSTVPECLA
                     ANHCGLKVAALSLITNLAAGLSGDVLTHEETLAEGAKA"
BASE COUNT          624 a         1037 c         1180 g          645 t
ORIGIN      
        1 cgctcctcat agaaggcgtc ggccatgccg ggcaacttga tctcgccgtg cagtggccgg
       61 tcggagacgc agagcagcgt gccatagggc acgcggaagc gataaccgtt ggcggccaat
      121 gtcgccgatt ccatgtcgat ggcgatggcg cgcgactgat tgaagcgcgt cgccagttcg
      181 ccgaagcgca gctcccagtt gcggtcgtcg gtggtgacga cggtgccggt gcgcagccgc
      241 cctttcagca ccgtgccttt caggccggtg acatcgccca ccgcctgcgc cagcgccaat
      301 tgcacttcgg cgatagtcgg cacgggaatg gccagcggca gcacgctgtc cagcacatgg
      361 tcgtcgcgca aataggcgtt ggccagcaca taatcgccca gccgctggct ggcgcgcaat
      421 ccgccgcaat ggccgaccat gatccacaca tgcggtcgca gcaccgcgat atggtcggtg
      481 atgttcttgg cgttggacgg tccgataccg atattgacca gggtgatgcc gtcgccgcct
      541 tcctgcacca gatgataggc cggcatctgc ggcatcttgg tgagcggcgg gcggctgggc
      601 gccttgccct tttccgtgac ccggccgccc ggctcgatga agcgtacagc gcgtccggcc
      661 tcgagctcct tcaaaccata gtcgatgaat tcgtcgatat agcgctggta gttggtgaaa
      721 agcacgaagc tctgaaaatc ctgcgggtcg gtgccggtgt aatggcgcag ccggtgcagc
      781 gaataatcca cccgctcggc ggagaacagc gacagcgggc cggtgcccgc ccccgtccag
      841 cgcccgccat cggcaatggt gtcatgcgcc gcatccagcc gcggcagggg gaagtgccgc
      901 gccagttcga tgcgctgggc cgcgttcatc tgggcggcgg cgcgctccac cgcgaaggtg
      961 agcggaatcg gcgtgtggct cttgccgaca tacaggtcgc ccttggcatt ggccgtcagg
     1021 atttccaact gctcgatcag ataggtgcgg aacaggcgcg gcgcggtgat ggtggtgcca
     1081 tataggccgg ggcgcgggat cttgccgaaa gcgagggtgg aatggctggg cgtggtcacc
     1141 gtttccacct cgatgcagag atagggatag acctgtttct tatattcccc gatatcgcct
     1201 ttggcgaagc gttcaaagtc ctgctcgatc cgggcgatgg ccagttcgta aagctcgatc
     1261 agcagatcga tggctgcttg tgggctggcg caacgcacca gttcggttgc ggggacgccg
     1321 ccatatttgg gaccgtggga agcagttgtc atcttggcgc tcaaagaaaa gaggtgccga
     1381 catccatcgg cggcaggccg agatgctggg cgatggattg gccgatatcg gcgaaggtgt
     1441 tgcgctggcc gatatcgccc gccgggatgc ccggaccgaa ggcgatcacc gggacatatt
     1501 cgcgggtatg gtcgctgccg ggccaggtgg gatcgcagcc atgatcggcg gtgaacacca
     1561 ccagatcgcc gtcgctgagg gatgctttca gctcgggaat ttgccggtcg aaggcttcca
     1621 gcgccgcggc atagccggct atgtcgcggc gatggccata ggactggtcg aaatccacga
     1681 agttggcgaa ggtgatggaa ccgtccggcg cggtcctggc gcattcgatc aggcgcgtga
     1741 aggtgtcgtc attgccttcg gtcttgatgt tccgggtcag gccgcgtccc gcgaagatgt
     1801 cggaaatctt gccgatgccg gtgacctcac ggccatcgtc cttggcgatg tccagcaagg
     1861 tcggccggtg cggcggcatt gaataatcgt ggcgattgta ggtgcgttta aaggcacccg
     1921 ccgtctcgcc gataaagggc cgggcgatca cgcgcccgac attgtaagga tcgaccagtt
     1981 cgcgcgcgat gtgggaaatc tcgtacagcc gctccagccc gaaatgggtt tcatgcgccg
     2041 cgatctggaa caccgaatcc gcgctggtgt agcagattgg cttgccggtc ctgatatgct
     2101 cctcgccata ttgctcgatg atcacggtgc ccgaggcatg gcaattgccc agaatgccgg
     2161 gcagccgcgc ccgcgcgatg aaggcgtcgg tcagctcctt gggaaaggtg ggcacagtct
     2221 gcggaaaata accccagtca tattcgaccg gcaggcccat catctcccag tggccggacg
     2281 gcgtgtcctt gccgcggctg agttccgacg ccgcgccata gcgcccgctg acgggaccgt
     2341 tttgaagcgg cgcgacgcgg ggatcggccc tgctggcggc caggcccagg cccagcgaca
     2401 gcaggttggg gatggcgagg gggccgctgc ggcgagtgtc atcggcccgg ccttcagcgc
     2461 aggcttgcac gatatggcca taggtgttgg cgccggcatc gccgaaatgc tccgcgtcgg
     2521 gcgtggcgcc gagcccgaag gaatccagaa cggcgatgag tgcgcgcaag atatggtccg
     2581 aaatgacggc cggaaaaacg gccggaaaaa cggtaagtcc gcagggattt gctctccccg
     2641 gacagccgtt atagttgatc gtccagaata gcctggaaga atagcttacc ggctcggcgc
     2701 aaggcaaagg gcgaaaacat ggcggatatc gttgcggatg gcatcgcagc cgtgaaagcc
     2761 gcctattcgg gcgcctttcc gaagacggcg ctgatcctgg gcagcggctt ggggcttttt
     2821 gcggacagac tgcaaagcgc taccgacatt tcctatggcg atctgccggg ctttcctgtg
     2881 cctacggtcg ctggccatgc cgggcagctt cgcatcggca cggtggccgg cacccacctc
     2941 gcctgcctga tgggccgctt tcacgcctat gagggtcatc ccgcagccgc gttggcggtg
     3001 ccgatccgta ttctcaaggg actgggcgtg gagcggctga tcctcaccaa cgcggccgga
     3061 ggcctgaagc gcgaccttcc cgccggcacg ctgatgatcg tggaggacca tatcaatttc
     3121 tccggccaga acccgctgat cgggcctaat gacgaacgcg tggggccgcg ctttttcgac
     3181 atgacctacg cctatgatcc ggatcttcgg gcgcggctga aagcggcggc ggccaaggcc
     3241 ggtgtggcgg tcaaaagcgg ggtctatctc tatgccctgg gccccaattt cgagacgccc
     3301 gccgaagtgc gcatgttcgc gcaatggggc agcgatgcgg tgggcatgtc caccgtaccg
     3361 gaatgtctgg cggcgaatca ttgcggcttg aaagtcgcgg ccctgtcgct gatcaccaat
     3421 ttggcggcgg gactcagcgg cgatgttttg acgcacgaag agactttggc ggaaggcgcc
     3481 aaggcc
//
LOCUS       DATMDK010000239         2037 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1951832,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000239 DATMDK010000000
VERSION     DATMDK010000239.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2037)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2037)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2037
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1951832"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..363)
                     /locus_tag="VNN98_04610"
     CDS             complement(<1..363)
                     /locus_tag="VNN98_04610"
                     /inference="COORDINATES: protein motif:HMM:NF017102.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004040 - amidase activity [Evidence IEA];
                     GO_function: GO:0042834 - peptidoglycan binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CHAP domain-containing protein"
                     /protein_id="HWM61407.1"
                     /translation="MSSIGKLAAAALLATGLTGCASDMEYSEMPREPGHAVVESAAQK
                     PLQCVPYAREHSGIKIFGDAYTWWDKAAGKYPRGTLPEPGAVMVLNNYAGANRGHVAV
                     VRRVASAREIRVDHANWLD"
     gene            complement(480..1916)
                     /locus_tag="VNN98_04615"
     CDS             complement(480..1916)
                     /locus_tag="VNN98_04615"
                     /inference="COORDINATES: protein motif:HMM:NF025025.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HWM61408.1"
                     /translation="MHGLSQLLQFALCIVLVSVCTLSVQLAGLAWVRVFRKSPSLKRA
                     ELPDAELPHVLVQLPVCNEGPLAVRVAAAAARMDWPLDRLTIQLLDDGDHAGHDELAA
                     AVRAVVPGDVNFQILRRGSRKGFKAGNLAFGLSHSDAPLVAVFDADFVPPADFLRRTI
                     PVLLADSGLAFVQSRWGHANRGANWLTRVQGLLLDSHFAVEQEARFRAGMPISFNGSA
                     GVWNRTAIERGGGWTGDTLTEDLDLSMRCMMQGWRGAMVSDLVVPGELPQTAAAWRAQ
                     QARWTKGHAQVARKLLPQVWASTMPLWKKAAMTLQMCQFAFYTLAFTSAAISLTLTSM
                     SVTYYFSVVWLGWIVTFLGLASSIGYLWLGQRVLRQHESKLVRSLLLSVVFPSGLILA
                     NTRATFEAFFSTRMDFNRTTRVGEIQKGGWRGGPELVVGVLLPAIAFAEANWSALFFF
                     FAVSGLVSIGAMGAIAPRPVPRRITPGE"
BASE COUNT          393 a          664 c          653 g          327 t
ORIGIN      
        1 atccagccaa ttggcgtgat ccacccgtat ctcacgcgcg ctcgccaccc ggcgcaccac
       61 cgccacatga ccgcggttgg cgccggcata attgttcagc accatcaccg cgccgggttc
      121 cggcagcgtg ccgcgcggat attttccggc cgccttgtcc caccaggtat aggcgtcgcc
      181 gaaaatcttg atgccggaat gttcgcgcgc gtaaggtacg cattgcagcg gtttctgcgc
      241 ggcactttcc accacggcat ggccgggctc gcgcggcatt tcgctgtatt ccatgtcgct
      301 ggcgcagccc gtcaggccgg tcgccaacag cgccgccgcc gccaattttc cgattgaact
      361 catcgcgtca ccttcaaccc ggatgaaggc tacgcgcgcg ggcgcaaagg cagggttagg
      421 ccaaaggatc ggattttagg gattaaaaag cgtggggtct ttttaagacc gcgtttacgc
      481 tactcgcccg gggttatacg ccggggcacc ggccggggag cgatggcgcc catggcgccg
      541 atcgagacca ggcccgacac ggcgaagaag aaaaatagcg cgctccaatt ggcctcggca
      601 aaggcgatgg ccggcagcag cacgcctacc accagttccg ggccgccgcg ccagccgccc
      661 ttctggatct cgcccacccg tgtggtgcgg ttgaaatcca tccgggtgga gaagaaggct
      721 tcgaacgtgg cgcgggtgtt ggccaggatc aggcccgaag ggaacaccac ggacaacagc
      781 agcgaccgca ccagcttact ttcatgctgt ctgagcacac gctggcccag ccatagatag
      841 ccgatggacg aggccagccc caggaaagtg acgatccaac ccagccatac cacgctgaaa
      901 tagtaggtca cgctcatgct ggtcagggtc agcgagatgg cggcgctggt gaaagccaag
      961 gtataaaagg cgaactggca catttgcaag gtcatcgctg cttttttcca cagcggcatg
     1021 gtgctggccc agacctgggg cagcaacttg cgcgccacct gggcatggcc ttttgtccaa
     1081 cgggcttgct gcgctctcca cgcggccgcg gtctgcggca attctccggg caccaccaga
     1141 tcggacacca tggcgccgcg ccagccctgc atcatgcagc gcatggaaag gtccaggtct
     1201 tcggtcaggg tatcgccggt ccagccgccg ccccgttcga tggcggtgcg gttccacacc
     1261 ccggcgctgc cgttgaagga gatcggcatg ccggcgcgga agcgcgcttc ctgttccacc
     1321 gcgaaatggg aatccagcaa caggccttgc acccgcgtca gccagttggc gccgcgattg
     1381 gcatggcccc agcgcgactg cacaaaggca agtccgctat cggccagcag cacggggatg
     1441 gtgcggcgca ggaaatcggc cggcggcacg aagtcggcat cgaacaccgc caccagcggc
     1501 gcatcggaat gggaaaggcc gaaggcgagg ttgccggcct tgaaaccctt gcggctgccg
     1561 cgccgcagaa tctggaaatt cacatcgccg ggcaccacgg cgcgcaccgc agcggccagt
     1621 tcgtcatggc cggcatgatc gccgtcgtcc aggagctgga tggtgagccg gtcgagcggc
     1681 cagtccatcc gcgcggcggc ggcggcgacg cgcaccgcca gcgggccttc attgcagacc
     1741 ggaagctgca ccagcacatg cggcagctcg gcatcgggaa gttcggcgcg cttaaggctg
     1801 gggcttttgc ggaagacgcg aacccaggcc aggcccgcca gctgaaccga aagggtgcag
     1861 accgaaacca ggacgatgca gagggcgaac tgaagaagtt gggaaagacc gtgcatggcg
     1921 atcgttctgg cccccacaag gctcgttttt tccaaccggc gaaccggccg tttcggcccg
     1981 ttttgggcct gcccggcagt taggcaccga acggtccgaa cttctcctgc ccggcgg
//
LOCUS       DATMDK010000240         5719 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1021205,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000240 DATMDK010000000
VERSION     DATMDK010000240.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 5719)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5719)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5719
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1021205"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..694
                     /locus_tag="VNN98_04620"
     CDS             <1..694
                     /locus_tag="VNN98_04620"
                     /EC_number="2.1.1.193"
                     /inference="COORDINATES: protein motif:HMM:NF008696.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006364 - rRNA processing [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="16S rRNA (uracil(1498)-N(3))-methyltransferase"
                     /protein_id="HWM61409.1"
                     /translation="LGEGVAVALDEGQAHYLLHVLRAKAGNLVSLFNGRDGEWRAGIA
                     QADKRGVTATCLKQSAPQQGAPDIWLAFAPVKKTPSDYLVQKAAELGVSVLQPVFTRR
                     TIVSRINEERMAANAIEAAEQSGRLSVPDIREAVSLDKLLASWPEERRLLFCDEGGDA
                     KAMTQAARESRGGPCAILTGPEGGFDPAERAALRALPFVTPVTLGPRILRADTAALAA
                     LAVWQSIAGDWV"
     gene            complement(671..1606)
                     /locus_tag="VNN98_04625"
     CDS             complement(671..1606)
                     /locus_tag="VNN98_04625"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61410.1"
                     /translation="MKKIPVGTTIAHAYRFAFGDFFRILGVMWLPMAIMWLPSLLMRA
                     RIMALSAQFAAHDFSAMREMWGVLLPLYLAVFVFLFMQMIGIARLALGLQRGTVWFYF
                     SLGKPVWRLIGSYLLVIVATIIGWLAVILGSVLIGFLAGLIAKSVNNSAFGVITAILA
                     GLGMIFLWCGVLYCFVRLTFLLVPVVAAEEEGFALAHSWTLGLGNFWRMFAILLVILV
                     PFILLECIFVFGFMFKGLPFPPPHASADQAAAFQMALNANALTMMNNMYHYWYISFPL
                     TIAVMVVLYGMAVGAQCFAYRALTQSEALDPIAGN"
     gene            complement(1671..2219)
                     /locus_tag="VNN98_04630"
     CDS             complement(1671..2219)
                     /locus_tag="VNN98_04630"
                     /inference="COORDINATES: protein motif:HMM:NF019928.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC family protein"
                     /protein_id="HWM61411.1"
                     /translation="MDNYAKQIDERTVEFVRILPGPIEKIWAYLWGGDKRGEWFCSGA
                     MPTKPGMSFDMYFKHSTLSPHQAPPPEKYAEMDKNGHHSRNVLLAYEPPHRLVFSFGP
                     DPAESSEVEFRLTPEGDAKDNKIRFTLTHRKIADINTARNVSNGWHSHLAILQYRAEG
                     KVPPAFWDVWRETKDFYDKRYS"
     gene            complement(2275..2547)
                     /locus_tag="VNN98_04635"
     CDS             complement(2275..2547)
                     /locus_tag="VNN98_04635"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61412.1"
                     /translation="MNIGAADGLRLAAAPAFAIMAVLTVLFGGEQMPMICSADTSLLT
                     GMVPMYALMSVFHAPPWLQLIAKRRKIRFSNPATAFLEMPGNTART"
     gene            complement(2570..3358)
                     /locus_tag="VNN98_04640"
     CDS             complement(2570..3358)
                     /locus_tag="VNN98_04640"
                     /inference="COORDINATES: protein motif:HMM:NF017771.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015036 - disulfide oxidoreductase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DUF899 domain-containing protein"
                     /protein_id="HWM61413.1"
                     /translation="MQHQIVSRDKWLAARLGLLKDEKELTRRSDALAQRRQELPWVRV
                     DKAYRFDTEEGSATLADIFKGRSQLLVYHFMFGPDYKAGCPSCSSIADGFNGVAVHLE
                     NHDVAFWAVSRAPLAKLQAYRQRMGWTFAWASSSGSDFNADFNIYFTEEQQRKGGIEY
                     NYRHEKPMREPLAGKTAQEWKLHDGESPVEKQAAMTGTDVPTYTRDRPGMSAFVLEDG
                     VVYHSYSTYARGLDGVWGMYQWLDRAPKGRNEEGVWWRRHDEYR"
     gene            complement(3405..3905)
                     /locus_tag="VNN98_04645"
     CDS             complement(3405..3905)
                     /locus_tag="VNN98_04645"
                     /inference="COORDINATES: protein motif:HMM:NF019928.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC domain-containing protein"
                     /protein_id="HWM61414.1"
                     /translation="MKGPEKGEVIAESAVRFVRTFDASSEKIWAFLTDGSLLPEWYGE
                     GSIEPREGGAVTLMAGHIRGVVTGWHPQKFLAYTWSVFQLGEEVSAWPISYVEFALEK
                     KHSGATLTLTHRPIPEPMQKLTAIGWHTMLDLIAHALMGEFPHRTEVMPRNAALYGVD
                     LNAVKR"
     gene            complement(3902..4243)
                     /locus_tag="VNN98_04650"
     CDS             complement(3902..4243)
                     /locus_tag="VNN98_04650"
                     /inference="COORDINATES: protein motif:HMM:NF033788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metalloregulator ArsR/SmtB family transcription
                     factor"
                     /protein_id="HWM61415.1"
                     /translation="MSALQALADPTRQRIVEMLAAGALSSGEIAGRFALSPPAISQHL
                     KTLKAARLVTVRADKQKRIYQLDPEGVAEVSEWVARIRAFWNPRLDALEAALSASSSE
                     AVGHRKRQDSK"
     gene            4346..>5719
                     /locus_tag="VNN98_04655"
     CDS             4346..>5719
                     /locus_tag="VNN98_04655"
                     /EC_number="6.3.2.2"
                     /inference="COORDINATES: protein motif:HMM:TIGR01436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004357 - glutamate-cysteine ligase
                     activity [Evidence IEA];
                     GO_process: GO:0006750 - glutathione biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--cysteine ligase"
                     /protein_id="HWM61416.1"
                     /translation="MSIPQSASGPIQSRDDLVRHLSRGCRPAADWRIGTEHEKFVYDL
                     RTHKPVAYEGKPGIRQLLEGMQRFGWQPVLEGGNIIGLMGTGAQNGASLSLEPGGQFE
                     LSGAPLQSVHETCAEVATHLKQTREIAGEIGVGVLGIGFAPSWSLAETPMMPKGRYKI
                     MRDYMPRVGGYGLDMMFRTCTVQVNLDFESEADMVKKFRVGLALQPVTTALFANSPFR
                     EGRPSGFLSYRAQVWTDVDNARAGMLPWVFEDGMSFERYVDYALDVPMYFLYRDGKYI
                     DMAGKSFRDFLAGKIAEVAHITPMLSDWADHLTTIFPEVRLKSFLEMRGTDGGQWGRI
                     CGMPALWVGLLYDSVALDAAWDLVKDWTAEERQSLRDGVAKQGFKTPFRKATVHELTH
                     RMLEISVAGLKRRAALDSGGMNEDGFLSPLREMVNRGHTRAEEMLKNYYGAWGRDLTP
                     LFTEYNFL"
BASE COUNT         1133 a         1743 c         1747 g         1096 t
ORIGIN      
        1 tctgggcgaa ggcgtggcgg tggctttgga cgaaggccag gcccattatc tcctgcatgt
       61 gctgcgcgcc aaagcgggga accttgtctc gctgttcaat ggtcgcgacg gcgaatggcg
      121 ggctgggatc gcgcaagcgg acaagcgcgg cgtgaccgca acctgcctga aacaaagcgc
      181 gccgcagcag ggcgcgcccg acatctggct ggccttcgcg ccggtgaaaa agaccccgtc
      241 cgactatctg gtgcagaagg cggcggaact gggggtgtcg gtcctgcagc cggtcttcac
      301 ccgccgcacc attgtcagcc gtatcaatga agagcgcatg gccgccaatg ccatcgaggc
      361 ggcggaacaa tcggggcggc tgtcggtgcc ggacatccgc gaagctgtca gcctcgacaa
      421 attgttggcg tcctggccgg aggaaaggcg gttgctgttc tgcgacgagg gcggcgatgc
      481 caaggcgatg actcaagcgg cgcgggaaag ccggggcggg ccgtgcgcca ttctcaccgg
      541 ccccgaaggc ggcttcgatc ccgccgagcg cgccgccctg cgtgccttgc cgttcgtgac
      601 gccagtgacg ctggggccgc gcatcctgcg cgccgacacc gccgccctgg cggcgctggc
      661 cgtgtggcag tcaattgccg gcgattgggt ctagcgcttc gctttgcgtc aacgcgcgat
      721 aggcaaaaca ctgcgcgccg acagccattc cgtaaagcac gaccatgacg gcgatggtta
      781 gcgggaagct aatataccaa taatggtaca tattgttcat catcgtcaaa gcattggcat
      841 tcaatgccat ctgaaaggcc gcggcctgat ctgccgacgc atgtggcggt ggaaagggca
      901 ggcccttgaa catgaaaccg aatacgaaaa tgcattccag aagaatgaaa ggaacaagaa
      961 taaccaggag gattgcaaac atgcgccaga aattgccaag ccccaaagtc cagctgtgcg
     1021 ccagcgcaaa accttcctct tcagcggcga cgaccggaac caatagaaaa gtcagccgga
     1081 caaagcagta gagaacgccg caccacagaa agatcatccc caaacctgcc aggatggccg
     1141 tgatcacacc gaacgcggaa ttgttcacag acttggctat cagaccggca agaaatccta
     1201 tcaggacgct acccagtatc accgcgagcc agccgatgat ggtcgccacg atcaccagca
     1261 agtatgatcc aatcagccgc caaaccggct tgcccagcga gaaatagaac cagacagtgc
     1321 cccgctgcag ccctagcgca agccgggcaa tgccgatcat ctgcataaac aggaacacaa
     1381 acaccgccag atataagggc agcagcacgc cccacatttc tcgcattgcc gagaagtcat
     1441 gagccgcaaa ttgcgcggac aatgccatta ttcgcgcccg catcagcagg ctgggcaacc
     1501 acatgatggc cataggcagc cacattacgc ccaagattcg aaagaagtcg ccgaaagcaa
     1561 agcggtaggc gtgcgcgatg gtcgtgccga caggaatctt tttcatgatt tccaccccag
     1621 atccgctgtg accttaacaa attcggggcg gctcgggaac tgacgcgatg tcagctgtag
     1681 cgcttgtcgt aaaagtcctt ggtttcgcgc cacacatccc agaaggccgg tggcaccttg
     1741 ccttccgccc tgtattgcag aatggcgaga tggctgtgcc agccgttcga tacattgcgt
     1801 gcggtgttga tatcggcaat cttgcggtgg gtgagggtga agcggatctt gttgtctttc
     1861 gcatcacctt ccggggtcag gcggaattcc acttccgagg actcagccgg gtccggcccg
     1921 aagctgaaga ccaggcggtg cggcggctcg taagccagaa gcacattgcg cgaatggtgg
     1981 ccattcttgt ccatctcggc atatttttcc ggcggcggcg cctggtgggg cgagagggtg
     2041 ctgtgcttga aatacatgtc gaaactcatc cccggcttgg tcggcatggc gccggagcaa
     2101 aaccattccc cgcgcttgtc gccgccccat agataggccc agatcttttc gatcggaccg
     2161 ggcaggatgc gcacgaattc gacagtgcgc tcgtcgatct gctttgcgta attgtccatg
     2221 gcattatcct tgtttaattg ccgctccggc ttgcgcccac gctcatacgt ttgatcatgt
     2281 ccgcgccgta ttgcccggca tttccaggaa agcggtcgcg gggttggaaa atcgaatctt
     2341 tcgccgcttg gcgatcagct gcaaccaggg cggcgcgtga aaaacgctca tcagcgcata
     2401 catggggacc atcccggtca gaagtgatgt atcggccgag cagatcatcg gcatctgctc
     2461 gccgccaaac aggaccgtca acacagccat gattgcgaag gccggtgcgg ccgccaggcg
     2521 aagcccgtcg gccgcgccga tattcatcgg gcgaagagac atcgacatat cagcgatact
     2581 cgtcgtggcg gcgccaccag acgccctctt cgttgcggcc cttgggcgcg cggtcgagcc
     2641 actgatacat gccccatacg ccgtccagcc cgcgcgcata ggtcgaatag ctgtggtaga
     2701 cgacgccatc ttcgagcaca aacgcactca tgcccggcct gtcgcgcgtg tatgtgggaa
     2761 catcggtgcc ggtcatggcg gcttgctttt cgacggggct ctcgccgtcg tgcagcttcc
     2821 attcttgcgc ggtcttgccg gcgagcggct cgcgcatggg cttctcgtgc cggtaattgt
     2881 attcgatacc gcctttgcgc tgttgctcct cggtaaagta gatgttgaag tcggcgttga
     2941 agtcgctgcc ggacgacgat gcccaggcaa acgtccatcc catccgctgc ctgtaggcct
     3001 gcagctttgc aagcggcgcc cgcgacaccg cccagaacgc gacgtcatgg ttctccaggt
     3061 gaacggcgac accgttaaac ccatccgcga tcgacgagca ggacggacag cccgccttgt
     3121 agtcgggccc gaacatgaag tgatagacca gaagttgcga tcggcctttg aagatgtctg
     3181 ccagcgtggc gctgccttcc tcggtgtcga agcgataggc cttgtcgacc cggacccatg
     3241 gcagttcctg acgccgctgc gccagcgcgt cgctgcgccg ggtcagctcc ttctcgtcct
     3301 tgagcaggcc gagccgggct gccagccact tatcgcggga aacaatttga tgctgcatag
     3361 ataacctcct gttggttggg atgcttgttg tgcggtccgt catgtcacct cttgacggcg
     3421 ttgagatcga cgccatagag cgccgcgttc cggggcatga cttcagtgcg gtgcgggaat
     3481 tcccccatca gtgcgtgcgc gatcaggtcg agcatggtgt gccagccgat cgccgtcagc
     3541 ttctgcatgg gctcgggaat ggggcgatgg gtcagagtga gggtggcccc gctgtgcttc
     3601 ttctccagcg cgaattccac atagctgatc ggccaagccg agacttcttc gccgagctgg
     3661 aaaacactcc aggtataggc caggaatttt tgcgggtgcc agccggtgac cacgccgcgg
     3721 atatgcccgg ccatcagcgt taccgcaccg ccttcgcgcg gttcgatgct gccctcgcca
     3781 taccattccg gcagcaggct accgtcagtg aggaaggccc agattttttc ggatgacgcg
     3841 tcgaaggtgc ggacaaagcg caccgcgctt tcagcaatga cttcaccttt ttccgggcct
     3901 ttcattttga atcctgcctt tttctatggc ctaccgcttc gctacttgag gccgataacg
     3961 cggcctccag cgcatccagc cgcgggttcc agaaggcgcg gatgcgcgcc acccattcgg
     4021 aaacttccgc cacgccttcg ggatccagct gatagatgcg cttctgcttg tcggcccgca
     4081 ccgtcaccag ccgggccgct ttcaaggtct tgagatgctg ggaaatggcg ggcggcgaca
     4141 gtgcgaatcg ccccgcgatc tccccggacg acagcgcgcc ggcggccagc atctcaacga
     4201 tgcgttggcg ggtggggtca gccagggcct gtaatgcact catgaccttg ttattgcgta
     4261 tctacttaat taagtcaaca cgaaaataaa gccgccttgc gcctgtcccg ccccgtcctt
     4321 aagtaccggc gcgagggttc cattcatgtc cattccacag tccgccagcg gcccgatcca
     4381 aagccgcgat gacctggttc gccacctgtc gcggggctgc cggccggccg ccgactggcg
     4441 tatcggcacc gagcacgaga aattcgtcta cgaccttcgg acccacaagc cggtggcgta
     4501 tgagggcaag cccggtatcc gccagttgct ggaaggcatg cagcgtttcg gctggcagcc
     4561 cgtgctggaa ggcgggaaca tcatcggcct tatgggaacg ggggcccaga acggcgcctc
     4621 gctgagtctg gagccaggcg ggcagtttga actctccggc gcgccgctcc agtcggtgca
     4681 tgaaacctgc gccgaggtgg ccacccatct gaagcagacc cgcgagatcg ccggcgagat
     4741 cggcgtgggt gtgctgggta tcggctttgc gcccagctgg agcctggctg agacgccgat
     4801 gatgcccaag ggccgctaca agatcatgcg cgattacatg ccgcgtgtcg gcggctatgg
     4861 tctggacatg atgttccgca cctgcaccgt gcaagtgaat ctggatttcg aatccgaagc
     4921 cgacatggtg aaaaaattcc gcgtcggcct ggcgttgcag cccgtcacca cggcgctgtt
     4981 cgccaattca ccgttccgcg agggccggcc cagcggtttc ctgtcttacc gggcgcaggt
     5041 gtggaccgat gtcgacaatg cccgcgccgg catgctgccc tgggtgttcg aagacggcat
     5101 gtcgttcgag cgctacgtcg attacgcctt ggatgtgccg atgtattttc tctatcgcga
     5161 cggcaagtat atcgacatgg cgggcaagag ctttcgcgat ttcctggccg gaaagatcgc
     5221 ggaagttgct cacatcacgc cgatgctcag cgactgggcc gatcacttga ccaccatctt
     5281 tcccgaggtg cggctgaaaa gctttttgga gatgcgcggc accgatggtg gccaatgggg
     5341 ccgcatctgc ggcatgccgg cgctatgggt aggcctgttg tatgacagcg tggcgctgga
     5401 cgccgcctgg gacctggtca aggactggac ggcggaagaa cgccagagcc tgcgcgacgg
     5461 tgttgccaag cagggcttca agacaccctt ccgcaaagcc acggtgcatg aactgacgca
     5521 tcgcatgctg gagatctccg tcgccggcct caagcgccgc gccgcgctgg acagcggcgg
     5581 catgaacgaa gacggtttcc tgagcccgct gcgcgaaatg gtgaaccgcg gccatacccg
     5641 cgccgaggaa atgctgaaga actattacgg tgcttgggga agagacctca cgccgctgtt
     5701 caccgagtat aatttcctc
//
LOCUS       DATMDK010000241         3036 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1249421,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000241 DATMDK010000000
VERSION     DATMDK010000241.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3036)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3036)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3036
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1249421"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>3036
                     /locus_tag="VNN98_04660"
     CDS             <1..>3036
                     /locus_tag="VNN98_04660"
                     /inference="COORDINATES: protein motif:HMM:NF016944.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004352 - glutamate dehydrogenase (NAD+)
                     activity [Evidence IEA];
                     GO_process: GO:0019551 - glutamate catabolic process to
                     2-oxoglutarate [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="NAD-glutamate dehydrogenase domain-containing
                     protein"
                     /protein_id="HWM61417.1"
                     /translation="GLFTSSAYSAQPRTVPLLRRKIEAVMAHAGLAPASHDGKALTHI
                     LDTFPRDELFQVSADELYVIATGILHMGGLPRLKLFLRFDRFDRFVSALLLAPRDQIN
                     AKIRTEIHTLLAKAFNGRPSAFDAAVDDSALVRLHYIIGRNDGPLPQVDVRALERQIA
                     ALVTTWDDELADAVCAALGHSEGLVRLTALSPRFSPGYRDAFPAHEGARDLAVLQEIA
                     ATDDGLKLRANAWRREGDAAAALRLKLYVLGDVLPLSASLPVFENLGLKVIAEDSYPV
                     SFNTDGGWRQDAAILDFSMERADGVPVKLDEVRAPLQDAFHAVLRGEAESDGFNMLVM
                     GAGLDWRDVTILRAAGKFLRQAAMTFSLAYMQQALVRNPDVATLLVALFHARNDPQAS
                     GNRAANVLSLEKRIEAALKDVPSLDDDRIIRRFKNVFDAVLRTNFFQKGDNGAQRPAL
                     VMKFDSAKLDELPAPRPWREIFVYSPVLEGVHLRFGRIARGGLRWSDRREDFRTEVLG
                     LVKAQQVKNAVIVPVGAKGGFFPKLMPANPSREVFMETGITAYKTFINALLDVTDNLD
                     RNGEVVPPPDVLRPDGDDPYLVVAADKGTATFSDIANGIALERGFWLGDAFASGGSVG
                     YDHKKMGITARGAWEAVKRHFRELGTDIQATDFTVVGVGDMSGDVFGNGMLLSKHIRL
                     VAAFDHRHIFLDPCAPAGAEAETAFNERARLFALPRSSWDDYNKALIGKGGGIFARTL
                     KEIPLSPEVKALIGSDADSLSPPALINALLKAKTDLLWFGGIGTYIKAASQSHLDAGD
                     RANDAVRINGDEVGAKVVGEGANLGVTQLGRIEAARSGARIDTDAVDNSAGVDTSDHE
                     VNLKILLGGPVMRGELSEEQRNSLLASMTDDVAAHVLADNYNQTLALSVAQSRGVRDL
                     DAHGRLMRDLELRGKLDRTVEYLPGDAQLKVLANDASGLTRPELCVLLAYAKLDLDAE
                     VLASTLPDDPAFAALLAGYFPPAAVAAFPDEPQRHRLKR"
BASE COUNT          516 a          998 c          975 g          547 t
ORIGIN      
        1 cggtctgttc acttccagcg cctattccgc ccaaccgcgc accgtgccgc tgctgcgccg
       61 caagatcgag gcggtgatgg cccatgccgg cctggcgccg gccagccatg acggcaaagc
      121 gctgacccat attctcgaca ccttcccgcg cgacgaactg ttccaggttt cggccgacga
      181 actctatgtg atcgccaccg gcatcctgca tatgggcggg ctgccgcgcc tgaaattgtt
      241 cctgcgcttc gaccgcttcg accgcttcgt ctccgcactg ctgctggcgc cgcgcgacca
      301 gatcaacgcc aagatccgca ccgagattca caccctgctg gccaaggcct ttaacggccg
      361 ccccagcgcc ttcgacgcag cagtggatga cagcgcgctg gtgcggctgc actatatcat
      421 cggccgcaat gacggcccct tgccccaggt ggatgtgcgt gcgctggaac gccaaatcgc
      481 cgctttggtc accacctggg acgacgagct tgccgacgcc gtctgcgccg ccctgggcca
      541 cagcgaaggc cttgtcaggc tgacggcgct cagcccgcgc ttttcgcccg gttatcgcga
      601 cgcctttccc gcccatgagg gcgcccgcga cttggccgtg ctgcaagaga ttgccgcgac
      661 cgatgatggc ctcaaactgc gcgccaatgc atggcgccgc gaaggcgatg ccgcggcggc
      721 gctgcggctg aagctttatg tgctgggcga tgtgctgccc ttgtcggcct ctctgccggt
      781 tttcgagaat ctgggcctga aggtgatcgc ggaagattcc tatcccgtct ccttcaacac
      841 cgacggcggc tggcggcagg acgcggcgat cctggatttc tccatggaac gcgccgacgg
      901 cgtgccggtg aagctggatg aggtgcgcgc gcccctgcaa gacgctttcc atgccgtgct
      961 gcgcggcgaa gcggaaagcg acggcttcaa catgctggtg atgggcgcgg gcctggactg
     1021 gcgcgacgtc accatcctca gggccgcggg caagttcctg cgccaggcgg cgatgacttt
     1081 ctcccttgcc tatatgcagc aggcgctggt gcgcaatccc gatgttgcga ccctgctggt
     1141 ggccctgttc catgcccgca acgatccgca ggcttcgggg aatcgcgccg ccaatgtgct
     1201 gagcctggaa aaacgcatcg aagcggcgct gaaggacgtg ccgtctttgg acgacgatcg
     1261 catcatccgc cgcttcaaga atgtgttcga cgcggtgctg cgcaccaact tcttccagaa
     1321 aggcgataac ggggcgcagc gccccgccct ggtgatgaaa ttcgattctg ccaagctgga
     1381 cgaattgccc gcgccccggc cgtggcggga aatcttcgtc tattcgcctg tcctggaagg
     1441 cgtgcatctg cgctttgggc gcattgcccg cggcggcctg cgctggagtg accggcgcga
     1501 ggatttccgc accgaggtgc tgggcctggt caaggcgcag caggtcaaga atgcggtgat
     1561 cgtgccggtg ggcgccaagg gcggcttctt tcccaagctg atgcccgcca atcccagccg
     1621 cgaagtgttt atggaaaccg gcatcaccgc ctacaagact ttcatcaatg ctttgctgga
     1681 cgtcaccgac aatctggaca gaaacggtga ggtggtgccg ccgccggacg tgctgcgccc
     1741 cgatggcgac gatccctatc tggtggtggc ggccgacaag ggcactgcca ccttctccga
     1801 catcgccaat ggtatcgcgc tggaacgcgg tttctggctg ggcgatgcct tcgccagcgg
     1861 tggcagtgtc ggttacgacc ataaaaaaat gggcatcacc gcgcgcggcg cctgggaagc
     1921 ggtgaagcgc catttccgcg aactgggcac cgacatccaa gccaccgatt tcaccgtggt
     1981 gggcgtgggc gacatgtcgg gtgacgtgtt cggcaacggc atgctgctgt ccaagcatat
     2041 ccgcctggtc gcggccttcg accatcgcca catcttcctg gacccttgcg cgccggccgg
     2101 cgctgaggcc gagaccgcgt tcaacgaacg cgcccggctg ttcgccttgc cgcgttccag
     2161 ctgggacgat tacaacaagg cgctgatcgg caagggcggc ggaatttttg cccgcacgct
     2221 caaggaaatc ccgctttcac ccgaagtgaa agccctgatc ggcagcgatg cggacagcct
     2281 gtcgccgcct gccctgatca acgccctgct caaggccaag accgacctgt tatggttcgg
     2341 cggcatcggc acctacatca aggcggcgtc gcagtcccat ttggacgcgg gcgaccgcgc
     2401 caatgatgcg gtgcgcatca acggcgatga agtgggcgcc aaagtcgtgg gcgaaggcgc
     2461 caatctgggc gtcacccagt tgggccgtat cgaagcggcg cggtcgggcg cgcgcatcga
     2521 caccgatgct gtggacaaca gtgccggcgt ggacacgtcg gatcacgaag tgaatctgaa
     2581 gatcctgctg ggcgggccgg tgatgcgcgg cgaactgagc gaagaacagc gcaacagctt
     2641 gctcgcctcc atgaccgacg atgtcgcggc ccatgtgctg gccgacaatt acaaccagac
     2701 tctggcgctg tcggtggccc agtcgcgcgg ggtgcgcgat ctcgatgccc atggccggct
     2761 gatgcgcgac ctggagctgc gcggcaagct ggaccggacg gtggaatatc tgcccggcga
     2821 tgcgcaattg aaggtcctgg ccaatgacgc aagcgggctg acgcggcctg aactgtgcgt
     2881 gctgctggcc tatgccaagc tcgatctcga cgccgaagtg ctggccagca ccctgcccga
     2941 cgatccggcc ttcgccgccc tactggcggg ctatttcccg cctgccgcgg tcgcggcctt
     3001 ccctgatgag ccgcagcgcc atcgcctgaa gcgcga
//
LOCUS       DATMDK010000242         2528 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2394825,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000242 DATMDK010000000
VERSION     DATMDK010000242.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2528)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2528)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2528
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2394825"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..768)
                     /locus_tag="VNN98_04665"
     CDS             complement(<1..768)
                     /locus_tag="VNN98_04665"
                     /inference="COORDINATES: protein motif:HMM:NF024753.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-binding-like beta-propeller repeat protein"
                     /protein_id="HWM61418.1"
                     /translation="MARMANLAVGLAVAMAAPCAAAEPGWPHYGGDQGGQRYSAATQI
                     TPANVGGLKPAWSFSTGAMTAHAGAMGEASFEDTPILDEGKLFVCSPFYEAIALDPGT
                     GRELWRFNPRIDDNPHLGYPEGFKCRGLAYGKDAVGRGRIYLATADRRLIALDAASGK
                     PVDGFGLHGTVTVSSGKLERPGQMQFTSMPLVSHGVVVIGSTFGDNRRAFELPGTVHA
                     FDAATGVPRWSFDPLADAREKSGAANVWAPMSVDEARG"
     gene            961..1698
                     /locus_tag="VNN98_04670"
     CDS             961..1698
                     /locus_tag="VNN98_04670"
                     /inference="COORDINATES: protein motif:HMM:NF016296.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LytTR family DNA-binding domain-containing
                     protein"
                     /protein_id="HWM61419.1"
                     /translation="MINILNVISAEHDMPHLNPLEPLIWEGSSWLTLMAFFWIVWLAW
                     RLAPLRVRPRWLLLIHIPAALVFSLAHVSGFVALRVLAYRALGGQYHVGHFWAQFVYE
                     LRKDSFGYLMFLAGFALIEHLLRQQLPAPGQAPTTFDIRDGAKLTRVPLSDILAITSA
                     GNYVEFALADGRRLLMRSPLSAVESDLSGRGFVRTHRSWLVNEAAVTGLEPEGSGDYG
                     VALGSLTAPLSRRFPAALARLRGGKSA"
     gene            1835..>2528
                     /gene="purC"
                     /locus_tag="VNN98_04675"
     CDS             1835..>2528
                     /gene="purC"
                     /locus_tag="VNN98_04675"
                     /EC_number="6.3.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020092484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004639 -
                     phosphoribosylaminoimidazolesuccinocarboxamide synthase
                     activity [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylaminoimidazolesuccinocarboxamide
                     synthase"
                     /protein_id="HWM61420.1"
                     /translation="MKRRRIIYEGKAKILYEGTEPGTVIQYFKDDATTGNGAKKDTIE
                     GKGVLNNRISEYLMTQLQGIGVPTHFVRRLNMREQLIKEVEIIPLEVVVRNVAAGSMS
                     KRLGIEEGTALPRSIIEYYYKNDGLNDPWVSEEHITAFGWASPQDLDDIVNLTIRVND
                     FLSGLFLGAGIKLVDFKLEFGRLWENDYMRIVLADEISPDNCRLWDTQTNEKLDKDRF
                     RRDMGGVVEAYSE"
BASE COUNT          450 a          826 c          775 g          477 t
ORIGIN      
        1 tccgcgcgcc tcgtccaccg acatcggcgc ccacacgttg gcggcgcccg acttctcgcg
       61 cgcgtccgcc agaggatcga aactccagcg cggcactccg gtcgccgcgt cgaacgcatg
      121 taccgtgccc ggcaattcga acgcgcgccg gttgtcgccg aaggtcgaac cgataacgac
      181 caccccgtgg cttaccagcg gcatggaagt gaactgcatc tggcctgggc gctccagctt
      241 gccagagctg accgtcaccg taccgtgcag gccaaagcca tcgaccggct tgccgctggc
      301 cgcatccagc gcaatcaagc gccggtcggc agtggcgaga tagatgcgcc ccctgcccac
      361 tgcgtctttc ccataggcca ggccccggca tttgaagcct tccgggtagc cgagatgggg
      421 attgtcatcg atccggggat tgaaccgcca aagttcgcgc cccgtgccgg gatcaagcgc
      481 aatcgcctcg taaaagggcg aacagacgaa cagcttgccc tcgtccagga tcggcgtgtc
      541 ctcaaagctg gcctcgccca tggcgccggc atgggccgtc atcgcgccgg tggaaaagct
      601 ccaggccggt ttcagaccgc ccacgttggc gggggttatc tgggttgcag cggaatagcg
      661 ctgcccgccc tggtcgccgc cataatgagg ccagcccggt tccgccgccg cgcagggcgc
      721 ggccattgcc acggccagcc ccactgccag attcgccatt cgtgccatat gctttgcccc
      781 atgtccggtc ccgcccaatc tgcgacgtcg tccgcccccg taaaagagcc gggggatggc
      841 acgcgccgga ctggtgatat ttggcaatgg cttgggctga gcggcgatct tcaggggacg
      901 ggcggcacaa gccggcggac cttccgctat gcctatgctg gggctgcgct gatcgtggcg
      961 atgatcaaca tcctcaatgt catctctgcc gagcatgaca tgccgcacct caatcccctg
     1021 gaaccgctga tctgggaagg ctcgagttgg ctgacactga tggcgttctt ctggattgtc
     1081 tggctcgcct ggcggctggc gcccctgcgc gtccggccgc gctggctgct cctgatccac
     1141 attccagccg cgctggtctt ttccctggcc catgtcagcg gctttgtcgc cttgcgcgtc
     1201 ttggcctatc gagcattggg cggccagtac catgtcggcc atttctgggc gcagttcgtt
     1261 tatgaactgc gcaaggattc ctttggctat ctgatgttcc tggcgggatt tgcgctgatc
     1321 gaacatctgc tgcgccagca gttgcccgcg ccgggacagg cgccgacgac cttcgacatc
     1381 cgcgatggcg ccaaactgac gcgggtaccg ctgtcggaca ttctcgccat tacctcggct
     1441 ggcaattatg tggaattcgc cttggccgat ggccgccgtc tgctgatgcg aagcccgcta
     1501 tcggcggtgg aaagcgatct ttcggggcgc ggttttgtcc gcacccaccg ctcctggctg
     1561 gtgaatgaag ccgccgtcac cggcctggag cccgaaggct ccggcgacta tggcgtggcc
     1621 ctgggcagcc tgaccgcacc gctatcgcgc cgcttccccg ccgcgctggc acggctgcgg
     1681 ggcggaaagt ccgcttaagc ccttgatcgg gggacatttc tgtggacgag aacctgccat
     1741 gcggaactgc ggcggtggga atcattgccc ccggggtccc acgtccctaa attgcggtct
     1801 taacacccca tcgggccgca caggatttcc ccccatgaag cgccgccgca tcatctatga
     1861 gggcaaggcc aagatccttt acgaaggcac cgagccgggc accgtcatcc agtatttcaa
     1921 ggacgacgcc accaccggca acggcgccaa gaaggatacc atcgagggca agggcgtcct
     1981 caacaatcgc atcagcgaat atctgatgac ccagttgcag ggcatcgggg tgcccaccca
     2041 tttcgtgcgc cgcctgaaca tgcgcgagca gctgatcaag gaagtcgaga tcattcccct
     2101 ggaagtggtg gtgcgcaatg tcgccgccgg ctccatgtcc aagcggctgg ggatcgagga
     2161 gggcaccgct ttgccccgct cgatcatcga atattattac aaaaatgacg ggctgaacga
     2221 tccctgggtc agcgaagagc atatcaccgc cttcggttgg gccagtcccc aggacctgga
     2281 cgacatcgtc aacctcacca tccgggtcaa cgatttcctg tcggggctct ttttgggcgc
     2341 cggcatcaaa ttggtggact tcaagctgga gttcggccgg ctgtgggaaa atgattacat
     2401 gcgcatcgtg ctggccgacg agatcagccc ggacaattgc cgcttgtggg acacccagac
     2461 caacgaaaaa ctggacaagg accgtttccg ccgcgatatg ggcggcgtgg tcgaggccta
     2521 tagcgaag
//
LOCUS       DATMDK010000243         3642 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_584502,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000243 DATMDK010000000
VERSION     DATMDK010000243.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3642)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3642)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3642
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_584502"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..429)
                     /locus_tag="VNN98_04680"
     CDS             complement(<1..429)
                     /locus_tag="VNN98_04680"
                     /inference="COORDINATES: protein motif:HMM:NF012788.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan--tRNA ligase"
                     /protein_id="HWM61421.1"
                     /translation="MTHKPLVLSGMQPTNTLHLGNYLGALKNWVRLQDQMPCLFCVVD
                     MHAITQDVGYGHPAELAQATREVTAAYIAGGVDPARSPIFNQGQVPEHAELAWIFNCV
                     ARLGWLDRMTQFKEKSGKHKEGASLGLYAYPVLQAADILLY"
     gene            complement(475..3249)
                     /locus_tag="VNN98_04685"
     CDS             complement(475..3249)
                     /locus_tag="VNN98_04685"
                     /EC_number="2.7.7.59"
                     /inference="COORDINATES: protein motif:HMM:NF003467.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008773 - [protein-PII]
                     uridylyltransferase activity [Evidence IEA];
                     GO_process: GO:0006807 - nitrogen compound metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="[protein-PII] uridylyltransferase"
                     /protein_id="HWM61422.1"
                     /translation="MGLEKPQTLALQGLIDADALRRDLTALAKETGDSGTLRKAGLAL
                     IKQAFLDGREKVKYAVEKEGLPGLPAARALSQLQDTIIQVIYDFATKHVYRAQNPSHA
                     ERICVVATGGYGRGELAPGSDIDLLFLRPFKQTAWGESVIEFILYMLWDLGLKVGHAT
                     RSLAESVRLAKLDVTIRTAILEARYLWGDTGLYEELRKKFWNEVATGNGRDFVEAKLK
                     ERSQRHERQGESRYLVEPNIKEGKGGLRDLQTLYWIGKYLYHVEDAADLVEHGVFTRD
                     EYRIFQKAEAFLWNVRVHLHYLLGRAEERLSFDVQPTLAAQLGYVDAEKPRRAVEAFM
                     RAYFLVAKDVGDLTRIFCAALEEQHRKPRPSLRRMLPGFLKPRSPDDDFYVENGRLTA
                     NPAIFRADPANILRMFHIADIKGVDIHPNALRTVARSLDLITDAVRQNPVANQAFLEV
                     LTSRHDPERALRLMNEAGVLGRFIPEFGHAVGLMQFNMYHHYTVDEHLIRAVGHVAAI
                     ERGDHKDTNPLTSDIVKRIQSRNVLYCAILLHDVAKGLPGDHSDVGAEIARSLCPRLG
                     LSANDTTAVAWLVKNHLVMSDTAQRRDVSDPKTVRDFVDMVQTPEMLRLLVILTVADI
                     RAVGPGVWNGWKGQLLRELYYAADNMMTGGDQAPGRSARVASAKAALEARLGDFAPSQ
                     REKALTRHYDNYWLAFDEDELERHARLITNADAEGQLLTLTAETNAFRAVTEIILYTP
                     DNAGLFSQFAGAIAMSGGSIVDAKAFTTSDGWALDVFSVQDADGEAFGDVERLGRLRQ
                     SIEKTLRGEVWPRQQLARRVQRSKASAFTIRPKIHFDNEASRLATVIEVECLDRPGLL
                     YDITQAIFEAGLSISTSMVATYGERAVDVFYVRDGFGHKIVHPARLDAVEKRLKAAVA
                     PLEAPASAKA"
     gene            complement(3312..>3642)
                     /locus_tag="VNN98_04690"
     CDS             complement(3312..>3642)
                     /locus_tag="VNN98_04690"
                     /inference="COORDINATES: protein motif:HMM:NF012309.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006801 - superoxide metabolic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="superoxide dismutase family protein"
                     /protein_id="HWM61423.1"
                     /translation="TDFTAAGPILTLAPGKQHGYLAEGGPEAGDLPNQFAGADGKLHA
                     SVVANGFALGNGKRSIFDHDGVAIIVDARGDDYRTQPLGNAGDRIACGVVIRTVGPAA
                     RRKPHKP"
BASE COUNT          613 a         1146 c         1201 g          682 t
ORIGIN      
        1 gtagagaagg atgtcggcgg cctggaggac cggataggcg tagagtccga ggctggcgcc
       61 ctccttgtgc ttgcccgatt tttccttgaa ctgggtcatg cggtccagcc agcccagccg
      121 cgccacgcag ttgaagatcc aggccagctc ggcatgctcg ggcacctggc cctggttgaa
      181 gatcggcgag cgcgcgggat cgacgccgcc ggcgatatag gcagcggtga cttcgcgcgt
      241 cgcctgggcc agttcggcgg gatggccata gcccacatcc tgggtgatgg cgtgcatgtc
      301 caccacgcag aacaggcagg gcatctggtc ctgcagccgc acccagttct tcagcgcgcc
      361 caggtaattg cccagatgca aggtgttggt gggctgcatg cccgatagca caagcggttt
      421 gtgtgtcatg cccccgcatt ttcgcagaaa atgcggcctc ctttaaaaaa gtggttatgc
      481 cttagcggac gccggcgctt caagaggcgc aactgccgct ttcagccgct tctccactgc
      541 gtccagccgc gccggatgga cgatcttgtg gccgaaaccg tcgcggacat agaaaacgtc
      601 caccgcccgc tcgccatagg tcgccaccat ggaggtggag atggacaggc ccgcctcgaa
      661 gatcgcctgg gtgatgtcat acagcaggcc cggccggtcc aggcactcca cctcgatcac
      721 ggtggccagg cgcgaggcct cgttgtcgaa atggatcttg ggccggatgg tgaaggcgct
      781 ggccttgctg cgctggaccc tgcgggccag ttgctggcgc ggccacactt cgccgcgcaa
      841 ggtcttttcg atcgattggc gcagccgccc cagccgttcg acatcgccaa aggcctcacc
      901 gtccgcatct tgcaccgaaa agacatccag cgcccagccg tcggaagtcg tgaaggcctt
      961 ggcgtccacg atggagccgc ccgacatggc gatggcgccg gcgaattgcg agaacaggcc
     1021 ggcattgtcc ggggtgtaga gaatgatctc ggtgacggcg cggaaggcgt tggtttccgc
     1081 cgtcagggtc agcaattggc cttcggcatc ggcattcgtg atcagcctgg catggcgctc
     1141 cagctcgtct tcgtcgaagg ccagccagta attgtcgtaa tggcgggtca gcgccttttc
     1201 gcgctgcgac ggcgcgaaat cgcctaagcg cgcttccagc gccgccttgg cggatgcgac
     1261 gcgcgcgctg cggcccggcg cctggtcgcc gccggtcatc atattgtcgg cggcgtaata
     1321 gagttcgcgc agcagctggc ccttccagcc gttccacacg cccggcccca cggcgcggat
     1381 atccgccacg gtcaggatca ccagcaggcg cagcatttcg ggcgtctgca ccatgtccac
     1441 gaaatcgcgc accgtcttgg gatcggaaac atcgcggcgc tgggcggtgt cgctcatcac
     1501 caggtggttc ttcaccagcc aggctaccgc tgtggtgtca ttggccgaca ggcccaggcg
     1561 ggggcacagg ctgcgggcga tctccgcccc cacatcgctg tgatcgcccg gcaggccctt
     1621 ggccacgtca tgcaacagga tggcgcagta caacacgttg cgcgactgga tgcgcttgac
     1681 gatgtcgctg gtgagcggat tggtgtcctt gtgatcgccg cgctcgatgg cggcgacatg
     1741 gccgacggcg cggatcagat gttcgtccac cgtataatgg tggtacatat tgaactgcat
     1801 cagccccacg gcatggccga attcaggaat gaagcggccc agcactccgg cctcgttcat
     1861 cagccgcagc gcccgctcgg gatcgtggcg ggaggtgagc acttccagga aagcttggtt
     1921 cgctaccgga ttctggcgca ctgcatcggt gatcagatcc agcgagcgcg ccacggtgcg
     1981 cagcgcattg ggatggatgt ccacgccctt gatgtcggcg atgtggaaca tgcgcaggat
     2041 attggcggga tcggcgcgga agatggcggg attggcggtg agccggccat tctcgacata
     2101 gaagtcatcg tccgggctgc ggggcttgag gaatcccggc agcatccgcc gtagtgaggg
     2161 gcggggcttt ctatgctgtt cctccagcgc ggcgcagaag atgcgtgtga gatcaccgac
     2221 atccttggcc accaaaaagt aggcgcgcat gaaggcttcc acggcgcggc gcggtttttc
     2281 cgcatcgaca tagcccagct gcgccgccaa ggtcggctgc acgtcgaagc tcaggcgctc
     2341 ttcggcgcgg cccagcaaat aatgcagatg cacccgcaca ttccatagaa aggcttccgc
     2401 cttctggaag atgcggtatt cgtcgcgggt gaagacgcca tgctcgacca ggtcggcggc
     2461 gtcttccaca tgatagagat acttgccgat ccagtagagg gtctgcaggt cgcgcaagcc
     2521 gcctttgcct tccttgatgt tgggctcgac caggtagcgg ctttcgccct ggcgctcatg
     2581 gcgctggctg cgctccttga gtttggcttc cacgaaatcg cggccattgc cggtagcgac
     2641 ctcgttccag aatttcttgc gcagctcttc gtacagcccc gtatcgcccc acagatagcg
     2701 cgcttccagg atggcggtgc ggatggtgac gtccagcttg gccaggcgca cgctctccgc
     2761 caggctgcgg gtggcatgac caaccttgag acctaagtcc cacagcatgt agagaatgaa
     2821 ttcgatgacg ctttcgcccc aggcggtctg cttgaagggg cgcaggaaca gcaggtcgat
     2881 gtccgatccc ggcgccagct cgccgcggcc atagccgccg gtcgccacca cacagatgcg
     2941 ctcggcatgg gacgggttct gggcgcgata cacatgcttg gtggcgaagt cgtagatcac
     3001 ctggatgatg gtgtcctgca gctgcgacag cgcgcgggcg gcgggcaggc cgggcaggcc
     3061 ttctttctcg accgcgtact tgaccttctc gcgcccgtcc agaaaggcct gcttgatcag
     3121 cgccaggccg gccttgcgca aggtaccgga atcgccggtc tccttggcca gcgcggtcag
     3181 gtcgcggcgc aaggcgtcgg cgtcgatcag gccctgcaag gcgagggttt gcggtttttc
     3241 cagtcccatg gcggcgcgga tactgtcatg gggggaccgg ccccggcaaa tccagggctg
     3301 gcctgcgttt tttagggctt atgcggcttg cggcgcgcgg ctgggcccac cgtgcgtatc
     3361 accacgccgc aggcgatgcg gtcccctgca ttgcccaggg gctgggtgcg gtaatcgtcg
     3421 ccccgcgcat cgacgatgat cgccacgccg tcatggtcga agatcgagcg cttgccgttg
     3481 cccagggcga agccgttggc caccacgctg gcatgcagct ttccgtccgc gcccgcgaac
     3541 tggttgggca ggtcgcccgc ttccggcccg ccttcggcca gatagccatg ctgcttgccg
     3601 ggcgccaaag tcaggatagg cccggcggcg gtgaaatcgg tc
//
LOCUS       DATMDK010000244         2639 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1492135,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000244 DATMDK010000000
VERSION     DATMDK010000244.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2639)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2639)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2639
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1492135"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..446
                     /locus_tag="VNN98_04695"
     CDS             <1..446
                     /locus_tag="VNN98_04695"
                     /inference="COORDINATES: protein motif:HMM:NF014460.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HWM61424.1"
                     /translation="AFTAHIGTMRVNEEIDAMQTMGLNTVDTLVLPRIIGLVIALPVL
                     TFFSDIVGLIGGAAMCYFKLGITIPAFLRQLNEAVTINTLMVGLIKAPVFAFVIALVG
                     CYEGFQVERNAASVGQLTTRSVVESIFLIIVLDAAFSVMFSVLGV"
     gene            446..1237
                     /locus_tag="VNN98_04700"
     CDS             446..1237
                     /locus_tag="VNN98_04700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018250648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HWM61425.1"
                     /translation="MPESKDTKKETVIKVRGLVNGFGDKVIHDHIDLDVYRGEVLGVV
                     GGSGSGKSVLLRSIIGLIQPKEGKIEVFGRPTEEIEGSSMRQLEMRWGVLFQEGALFS
                     SQTAAENIQVPLREYTSMSEALMDEIACMKLGMVGLSSDTGDKYPSELSGGMKKRAGL
                     ARALALDPELLFLDEPTAGLDPISANQFDELIRQLQKALGLTVFLVTHDIDTLRAVTD
                     RIAVLVNKKLVIGTIAELRKNDDPWIKDYFSGVRGRAALASEEAH"
     gene            1237..2106
                     /locus_tag="VNN98_04705"
     CDS             1237..2106
                     /locus_tag="VNN98_04705"
                     /inference="COORDINATES: protein motif:HMM:NF014523.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0015914 - phospholipid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MlaD family protein"
                     /protein_id="HWM61426.1"
                     /translation="METKANYVAVGAFVLACVIGLVVTVMWLAGAQYSQEYAYYQASF
                     KGPVTGLGKGTVTRYNGIEVGRITNLEFDPADPQRVIVTVQVQPNLNIREDSVASIDS
                     QGFTGATFVQISGGTASAPLLVAKEGQTYPMIHTKQSTFAQLEQSAPEIVAKLNVAAS
                     RINDLLNDNNRRAISHVLANLDETTQVIARRSADIDATIANANKAMANLTEASNNLRP
                     TLNQVDLTVQKYGKVADDADAFINGDGLAQLSDLIGEMRRLVANLTQASDQLSRQPTK
                     LLFGDRRKGYEPK"
     gene            2115..>2639
                     /locus_tag="VNN98_04710"
     CDS             2115..>2639
                     /locus_tag="VNN98_04710"
                     /inference="COORDINATES: protein motif:HMM:NF015823.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-type transport auxiliary lipoprotein family
                     protein"
                     /protein_id="HWM61427.1"
                     /translation="MIQRRLFLIGASALGLSACGGNLLGLGPPDAGPIYPVRPVFPTG
                     SGEKVNWALSVLRPDVASGLDTDRIALMQPDGSLEFYAKANYPDRLTPIVQQALMDGF
                     EASGRIDAVAPEQAALHADYNLVTEVKDFAAHYSQQDGIPSVTVSITAKLTTAHGRAI
                     VASFSTIQTGTAAAN"
BASE COUNT          528 a          842 c          796 g          473 t
ORIGIN      
        1 cggccttcac cgcccatatc ggcaccatgc gcgtcaatga agagatcgac gccatgcaga
       61 ccatgggact gaacaccgtg gatacgctgg tgctgccgcg cattatcgga ctggtgatcg
      121 ccctgcccgt gttgaccttc ttctccgata tcgtcggcct gatcggcggc gccgccatgt
      181 gctatttcaa gctgggcatc accattccgg ccttcctgcg ccaactcaat gaggcggtga
      241 ccatcaacac cctgatggtg gggttgatca aggcgccggt cttcgccttc gtcatcgccc
      301 tggtcggctg ctatgagggc tttcaggtgg agcgtaacgc cgccagcgtc ggccaactca
      361 ccacccgctc ggtagtggaa agcatcttcc tgatcatcgt gctggacgcg gctttctctg
      421 tcatgttctc ggtactgggg gtctgatgcc ggaaagcaaa gacacgaaaa aagaaaccgt
      481 catcaaggtg cgcggcctgg tcaacggctt cggcgacaag gtgattcacg accatatcga
      541 cctggatgtt tatcgcggcg aagtgctggg ggtggtgggc ggctcgggct cgggcaagtc
      601 ggtgctgctg cgctccatca tcggattgat ccagcccaaa gaaggcaaga tcgaagtgtt
      661 cggccggccc accgaggaaa tcgaaggctc ctccatgcgg cagctggaaa tgcgctgggg
      721 cgtgttgttc caggaaggcg cgctgttttc ctcccagacc gcggcggaga atatccaggt
      781 ccccttgcgc gaatatacca gcatgagcga agcgttgatg gacgagatcg cctgcatgaa
      841 gctgggcatg gtgggcctat cgtccgatac cggcgacaaa tatccgtccg aactgtcggg
      901 cggcatgaag aagcgcgccg gcctggcccg cgccttggcg ctggatcccg aactgctgtt
      961 cctggacgag cccaccgccg gcctggaccc gatttccgcc aaccagttcg acgaactgat
     1021 caggcaattg caaaaggccc tgggcctcac ggttttcctg gtcacccacg acatcgatac
     1081 cttgcgcgcc gtgaccgacc gcatcgccgt gctggtgaac aagaagctgg tgatcggcac
     1141 catcgccgag ctgcgcaaga atgacgaccc ctggatcaag gattattttt cgggcgtgcg
     1201 cggccgggca gcattggcgt cagaggaggc gcactgatgg aaaccaaagc caattacgtc
     1261 gcggtcggcg ccttcgtgct ggcctgcgtc atcggactgg tggtcacggt catgtggctg
     1321 gccggggcgc agtacagcca ggaatatgcc tattaccagg cctccttcaa aggacctgtc
     1381 acgggcctgg gaaaaggcac tgtcacccgc tacaacggca tcgaggtggg gcgcatcacc
     1441 aatctggaat tcgatcccgc cgatcctcag cgcgtcatcg tcaccgtgca ggtgcagccc
     1501 aacctcaaca tccgcgaaga cagcgtcgcc tcgatcgaca gccaaggctt caccggcgcc
     1561 acatttgtcc agatcagcgg cggcaccgcc agcgcaccgc tgctggtggc caaggaaggc
     1621 cagacctatc cgatgatcca caccaaacaa tccaccttcg cccaattgga gcaatcggcg
     1681 ccggagatcg tcgccaagct gaatgtggcg gcatcgcgga tcaacgatct gctcaacgac
     1741 aacaaccggc gcgccatcag ccatgtgctg gccaacctgg atgagacgac acaagtgatc
     1801 gcgcggcgca gcgccgacat cgacgccacc atcgccaatg ccaacaaggc gatggccaat
     1861 ctcaccgaag cctcgaacaa tctgcggccc acgctgaacc aagtggatct gacagtgcag
     1921 aaatacggca aggtggccga cgatgccgac gccttcatca atggcgacgg gctggcgcag
     1981 ctgtccgacc tgatcggcga aatgcggcgg ctggtggcca atctcaccca ggcctccgac
     2041 cagttaagcc gccagccgac caagctgttg ttcggcgacc ggcgcaaggg atacgaaccc
     2101 aaatgaggct tcctatgatc caacggcggc ttttcctgat cggcgcttcg gcactgggcc
     2161 tgtcggcctg tggcggcaac ctgttgggcc tgggcccgcc cgatgccggg ccgatctatc
     2221 cggtgcggcc cgtcttcccc actggcagcg gcgaaaaggt caattgggcg ttgtcggtcc
     2281 tgcgtcccga cgtggccagc gggctggaca ctgaccgcat cgccctgatg cagcccgacg
     2341 gttctctgga attctacgcc aaggcgaatt atcccgaccg cctgacgccc atcgtgcagc
     2401 aggcgctgat ggacggcttc gaggcctcgg gccggatcga cgcggtggcg ccggaacagg
     2461 cggcgctgca tgccgattat aaccttgtca ccgaagtgaa ggattttgcg gcccattaca
     2521 gccagcagga cggcattccg agcgtgacgg tgagtatcac cgccaaactg accaccgccc
     2581 atggccgcgc cattgtcgcc agcttctcca ccatccagac cggcacggcg gcggccaac
//
LOCUS       DATMDK010000245         4307 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_3078852,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000245 DATMDK010000000
VERSION     DATMDK010000245.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 4307)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4307)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4307
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3078852"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1593)
                     /gene="metG"
                     /locus_tag="VNN98_04715"
     CDS             complement(<1..1593)
                     /gene="metG"
                     /locus_tag="VNN98_04715"
                     /EC_number="6.1.1.10"
                     /inference="COORDINATES: protein motif:HMM:TIGR00398.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004825 - methionine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006431 - methionyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methionine--tRNA ligase"
                     /protein_id="HWM61428.1"
                     /translation="MKRVLITSAIPYVAGVKHLGNLVGSMLPADIFARYCRSRGYDTL
                     AICATDEHGAPVELAALEEGMPVAEYAAKWHAVQKELGERFALSWDNFGRSSSPQNHE
                     LTLHFARALWKNGFLEIRVTKQAYSPTDRRFLPDRYVIGTCPHCGYDRARGDQCENCT
                     RVLDPIDLIKPRSAVSGAQDIEIRDSTHLFLKQSQFADRLRTWIDSHKADWPQLVTSI
                     AYKWLDEGLQDRGVTRDLEWGIPVPDDIADGQLKGKVFYVWFDAPIEYIAATKEWADK
                     NKKGEAWKSWWYGDAAKDVTYWEFMGKDNVPFHTVGFPVTIMASGEPWKLVDRLKGFN
                     WLNYDGGKFSTSGKRGIFMDAALDVAPADYWRYYLIANAPEGSDSNFTWEQFAGIINK
                     DLADVLGNFVNRVTKFCVARFDGMVPGEGEYGEDEKALIAELDRRIAQYAAFMEDAEF
                     RKAMGEMRAIWVAGNEYMTRAAPWTHIKTDRAKAAVGVRMGLNLIHQFAHLVWPVMPD
                     FAKTIHECVQPVGYRGGVIPFPD"
     gene            1682..2755
                     /locus_tag="VNN98_04720"
     CDS             1682..2755
                     /locus_tag="VNN98_04720"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61429.1"
                     /translation="MSGKTLKLTLVAMGSAAILTGAALAQNRPVPPPAASVIPASVLD
                     NLHHKDITNGIVSAKVYLPGDGAFYRGTRFDRTGVVAHATYKGTDYGQYWFSSYSPYV
                     HDFAWQNGQVTVSPASGAAGPSEEFTAINYDEAGIGGKFLKIGVGILKRDTDAYDFVH
                     IYPVVNEGKRGSSVTKTSVRMTHDLSDKDTGYGYSYVKTVRLVPGKAQMQIEHVLKNT
                     GKKDIVTAVYCHNFLSLAPGNENLTLTAPFALQAGRPLQADAASVNGNTLKYLRAVKE
                     GESVTSPFTGFGDKTSDYDFKVVNTATGFGQRIRADQPLSRINFWSIRTTFSWEPYIA
                     ISLKPGQTKRWTYTYDYFGPGEG"
     gene            2757..3797
                     /locus_tag="VNN98_04725"
     CDS             2757..3797
                     /locus_tag="VNN98_04725"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61430.1"
                     /translation="MKRAAIAAALLMGVCANAGAQPSPLAGSLPASALDDFPHVQISN
                     GLIIAQVYPPGDKELYKGTRFDHAGVVEHITYKGQDYTQYWFNRFVTDPRDEGKYSGG
                     TQHSCCAVSGPVEEFAPVGFDEAGIGGRFLKLGVGILRRDTEKYNQFPTYPILNAGKR
                     IFTATKTGARFTQDLQDKESGYGYRYVKSVQLAPSKPHLTIAHVLTNTGSKSMVTTVY
                     NHNFLTLSPGNEHVVIAAPFAMTAGQPLQPELARLEGTTIRYVAPIPPGEAVQSPITG
                     YGATAADYDFTITNTVTGFGQRLRADQPVASINFWSMQPVLGWEPYIAISLKPGETKR
                     WTNSYDFFGPNN"
     gene            3814..>4307
                     /locus_tag="VNN98_04730"
     CDS             3814..>4307
                     /locus_tag="VNN98_04730"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61431.1"
                     /translation="MKQASLALMLLAGATTTALAQGNAPFVPVNPQDTSPASALDSMP
                     SKTISNGLVSAKVYLPVPFGFYRSTRFDHAGMITHITYKGQDFGRYWFVKTSPDVKNF
                     TYDKDGLVAHPSDVAAGPVEEFAENGFDAAGPGGRFLKIGVGILKRDNDKYDRFHTYP
                     IINEG"
BASE COUNT          885 a         1433 c         1192 g          797 t
ORIGIN      
        1 atcggggaac gggatcacgc cgccgcgata gcccactggc tgaacgcatt catgaatggt
       61 cttggcgaaa tccggcatta ccggccagac cagatgtgcg aactggtgga tcaggttcag
      121 ccccatgcgc acgcccaccg ccgccttggc gcggtcggtc ttgatgtggg tccagggcgc
      181 ggcgcgggtc atatattcat tgcccgccac ccagatggcg cgcatctcgc ccatcgcctt
      241 gcggaactcg gcatcttcca tgaaagcggc atattgcgcg atgcggcggt ccagctcggc
      301 gatcagcgcc ttttcgtcct cgccatattc gccctcgccc ggcaccatgc cgtcgaagcg
      361 ggccacgcag aatttggtga cccggttgac gaaattgcca agtacgtcgg ccaggtcctt
      421 gttgatgatc ccggcgaact gttcccaggt gaaattgctg tccgagcctt ccggcgcatt
      481 ggcgatcagg taatagcgcc agtaatcggc gggcgcgacg tccagtgccg catccatgaa
      541 gatgccgcgt ttgccggaag tggaaaactt gccgccgtca tagttcagcc agttgaagcc
      601 cttcagccgg tccaccagct tccacggctc gcccgaggcc atgatggtga ccgggaatcc
      661 caccgtgtgg aagggcacat tgtccttgcc catgaattcc caataggtga cgtccttggc
      721 ggcatcgcca taccaccacg acttccaggc ctcgcccttc ttgttcttgt cggcccattc
      781 cttggtcgcc gcgatatatt cgatcggcgc gtcaaaccag acgtaaaaca ctttgccctt
      841 gagttggccg tcggcgatgt cgtccggcac cgggatgccc cattccaaat cgcgggtgac
      901 gccgcggtcc tgcaagccct cgtccagcca tttataggcg atggaggtca caagctgcgg
      961 ccagtccgcc ttatggctgt cgatccaggt ccgcagccgg tccgcgaact gcgactgttt
     1021 caggaacaga tgcgtggaat cgcgtatctc aatgtcctgc gctcccgaca ccgccgagcg
     1081 cggcttgatc aggtcaatcg ggtccagcac ccgcgtacaa ttctcgcact ggtcgccgcg
     1141 cgcccggtca taaccgcaat gcggacaggt gccgatgaca tagcggtcgg gcagaaaacg
     1201 cctgtcagtc ggcgaatagg cctgcttggt gacgcggatt tccaggaagc cgttcttcca
     1261 cagcgcgcgg gcgaaatgca aggtcagctc atggttctgc ggcgaggatg agcgcccgaa
     1321 attatcccag ctcagcgcga aacgttcgcc cagctccttc tgcaccgcat gccacttggc
     1381 ggcgtattcc gccaccggca tgccctcctc cagcgccgcc agttccaccg gcgcgccatg
     1441 ctcgtccgtg gcacagatcg ccaaagtgtc atagccgcgg gaccggcaat agcgggcgaa
     1501 gatatcggcc ggcagcatgg acccgaccag gttgcccaga tgcttgaccc cggcgacata
     1561 gggaatggcg gaagtgatga ggacgcgctt catgatctgc tatataaatg agggatacag
     1621 gaccagtcct catacaaggg gacggccaga gacgcaaaaa gcgaagcaaa aggggtgaat
     1681 tatgtccggt aaaacgctga aattgacttt ggtggcaatg ggttcggccg cgatcctcac
     1741 gggcgccgca ttggcccaga atcgcccggt cccgcccccc gccgccagcg tcattcccgc
     1801 cagcgtgctg gacaacctgc accacaagga catcaccaac ggcatcgtct cggccaaggt
     1861 ctatctgccg ggcgacggcg ccttctatcg cggcacccgc ttcgaccgca ccggcgtggt
     1921 cgcccacgcc acctacaagg gcaccgatta tggccagtac tggttctcca gctattcgcc
     1981 ctacgtccat gacttcgcct ggcagaatgg ccaggtcacc gtgtcgcccg ccagcggcgc
     2041 cgccggcccg tccgaggaat tcaccgccat caactatgac gaggcgggca tcggcggaaa
     2101 attcctaaag ataggcgtcg gcattctcaa gcgcgacacc gacgcctacg atttcgtcca
     2161 catctatcct gtggtgaatg aaggcaagcg cggcagcagc gtcaccaaaa ccagcgtgcg
     2221 catgacccat gacctgtcgg acaaggatac cggctacggc tattcctatg tgaagaccgt
     2281 ccggctggtg cccggcaagg cgcagatgca gatcgagcat gtgctgaaga acactggcaa
     2341 gaaggacatc gtcaccgccg tctattgcca caacttcctg tcgcttgccc ccggcaacga
     2401 aaatctgact ttgaccgcac ccttcgccct gcaggccggc cggccgctac aggccgatgc
     2461 cgcctcggtc aacggcaaca ccctcaaata tctacgcgcc gtcaaggaag gcgaaagcgt
     2521 cacctcgccc ttcaccggtt tcggcgacaa aaccagcgac tatgacttca aggtcgtgaa
     2581 caccgccacc ggcttcggcc agcgcatccg cgccgaccag ccgctgtcgc ggatcaattt
     2641 ctggtccatc cgcaccacct tcagttggga gccctacatc gctatctcgc tcaagccggg
     2701 ccagaccaag cgctggacct acacctacga ttacttcggc cccggcgagg gttgagatga
     2761 aacgcgcggc aatcgccgcc gcattgctaa tgggcgtttg cgccaatgca ggcgcgcagc
     2821 cgtccccctt ggccggctcc ctgcccgcca gcgcgctgga cgatttcccg catgtgcaga
     2881 tttccaacgg cttgatcatc gcccaagtct atccacccgg cgacaaggaa ctctataaag
     2941 gcacccgctt cgatcatgcc ggcgtggtcg agcacatcac ctataagggc caggactaca
     3001 cccaatactg gttcaaccgc ttcgtcaccg atcctcgcga tgagggaaaa tattccggcg
     3061 ggacacagca ttcctgctgc gccgtttctg gccccgtgga ggaattcgcg cccgtcggct
     3121 ttgacgaagc cgggataggc ggccgctttc tcaagcttgg cgtcggcatc ctcaggcgtg
     3181 ataccgaaaa atacaatcag ttccccacct atcccattct caatgccgga aagcgcatct
     3241 ttacagcaac gaaaaccggc gcgcgtttca cccaggactt gcaggacaaa gagtccggct
     3301 atggctatcg ttacgtgaag agcgttcagc tggcgccgag caagccgcac ctgaccatcg
     3361 cccatgtcct gaccaacacc ggcagcaagt ccatggtcac caccgtctac aatcacaatt
     3421 tccttacgct cagccccggt aacgaacatg tggtgatcgc cgcgcccttc gccatgacgg
     3481 cggggcagcc gttgcagccc gaactggcgc ggctggaagg caccaccatc cgctatgtcg
     3541 caccgatccc gcccggtgag gcggtgcaaa gccccatcac cggctatggc gccaccgccg
     3601 ccgactacga tttcaccatc accaacaccg tcaccggctt cggccaacgc ctgcgcgccg
     3661 accagccagt cgccagcatc aatttctggt cgatgcagcc cgttctgggc tgggaaccat
     3721 atatcgccat ttcgctcaag ccgggcgaga ccaaacgctg gaccaacagc tacgattttt
     3781 ttggacccaa taattaagaa ccgaaggaat aagatgaaac aggcaagctt ggccttgatg
     3841 cttctggcgg gtgccaccac cacggccctg gcgcaaggca atgcgccctt cgttcccgtc
     3901 aatcctcaag acacatcgcc ggccagcgcg ctggacagca tgccgtccaa gaccatcagc
     3961 aacggcctgg tttcggccaa ggtctacctg ccggtgccgt tcggcttcta ccgctcgacc
     4021 cgcttcgacc atgccgggat gatcacccac attacctata agggccagga tttcggccgc
     4081 tactggttcg tcaagacttc gcccgatgtg aagaacttca cctacgacaa ggacgggctg
     4141 gtggcgcatc cctccgacgt ggcggccggc ccggtggagg aattcgccga aaatggtttc
     4201 gatgcggccg gtcccggtgg gcgctttctc aagatcggcg tcggcattct caagcgcgac
     4261 aacgacaaat atgaccgctt ccacacctat cccatcatca atgaagg
//
LOCUS       DATMDK010000246         3349 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_357941,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000246 DATMDK010000000
VERSION     DATMDK010000246.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3349)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3349)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3349
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_357941"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..307)
                     /locus_tag="VNN98_04735"
     CDS             complement(<1..307)
                     /locus_tag="VNN98_04735"
                     /inference="COORDINATES: protein motif:HMM:NF012789.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UvrD-helicase domain-containing protein"
                     /protein_id="HWM61432.1"
                     /translation="MSGYGGRYSDPLDSAFEEQSAAPVPRDPPYLQGLNKEQREAVEA
                     VDGPVLVLAGAGTGKTRVLTTRLAHILATRRAWPGQILCVTFTNKAAREMKERIGALI
                     "
     gene            complement(371..556)
                     /locus_tag="VNN98_04740"
     CDS             complement(371..556)
                     /locus_tag="VNN98_04740"
                     /inference="COORDINATES: protein motif:HMM:NF025143.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4169 family protein"
                     /protein_id="HWM61433.1"
                     /translation="MAEIVNLRRARKAKARAEKDKTAQANRVAHGTPKALRNLAETRK
                     DKADQRLSGHKLSDDQK"
     gene            complement(549..1148)
                     /locus_tag="VNN98_04745"
     CDS             complement(549..1148)
                     /locus_tag="VNN98_04745"
                     /inference="COORDINATES: protein motif:HMM:NF014816.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0006749 - glutathione metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase family protein"
                     /protein_id="HWM61434.1"
                     /translation="MITLYHHPRTRSSRFLFLLEELGTPYEIHRIANIRRADGTGGVD
                     PENPHPHGKSPALKDGDTLVFESTAIALYLTDRFPQNGIGPVVGDAKRGAYVSWLSYY
                     AGVMEPAWMSAYMKWEIPRGTASWVKADEVLEFVNATLQQGPYILGDKFSAVDILIGT
                     TFKMFLGSPLLEKTDLLEGYVNRIISRPAYARTQARENG"
     gene            complement(1158..1358)
                     /locus_tag="VNN98_04750"
     CDS             complement(1158..1358)
                     /locus_tag="VNN98_04750"
                     /inference="COORDINATES: protein motif:HMM:NF024858.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribbon-helix-helix domain-containing protein"
                     /protein_id="HWM61435.1"
                     /translation="MLKKRSFSLSGHRTSVALEAEFWAVIDAAAKRDGQSLAALVAQI
                     GASRGERPLASALRLYALAARQ"
     gene            complement(1352..2014)
                     /locus_tag="VNN98_04755"
     CDS             complement(1352..2014)
                     /locus_tag="VNN98_04755"
                     /inference="COORDINATES: protein motif:HMM:NF037959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fused MFS/spermidine synthase"
                     /protein_id="HWM61436.1"
                     /translation="MSYWQKDYHQSASDARGVSTADYIHAMYAFLRQAKSKDVLMIGC
                     GGGTLATMLARGGVAVTIVDIHKLSFDIARDYFHLPAEIPCHVADGIAYLRKHRRRHD
                     AIVLDAFGEGGMPEKFKQPAFFKLAKSRLKTRGALFLMNVIVDGDEDSTPDDLVRTMR
                     KRWGKVRLLDTDGWVNRNAVIAAGAVTKLKKPRLLLPPRPGGPKLARELAILDWRSIR
                     RC"
     gene            complement(2185..>3349)
                     /locus_tag="VNN98_04760"
     CDS             complement(2185..>3349)
                     /locus_tag="VNN98_04760"
                     /EC_number="4.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005107031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004333 - fumarate hydratase activity
                     [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA];
                     GO_process: GO:0006106 - fumarate metabolic process
                     [Evidence IEA];
                     GO_process: GO:0006108 - malate metabolic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="class II fumarate hydratase"
                     /protein_id="HWM61437.1"
                     /translation="AQEVIDGKLDEHFPLMVWQTGSGTQSNMNANEVISNRAIEMMGG
                     VMGSKKPVHPNDHVNMSQSSNDTYPTAMHIACAEEIHHRLLPALKHLHTALAAKVTAW
                     ADIIKIGRTHTQDATPITLGQEFSGYAAQVSGGIARIEQGMPKLMELAQGGTAVGTGL
                     NAPIGFDKMVAERIAKITGLHFTTAPNKFEALAAHDAMVFSHGAINTVAASLFKIAND
                     IRLLGSGPRSGLGELALPENEPGSSIMPGKVNPTQCEALTQVCVQIFGNNAALTFADS
                     QGHFELNVYNPVMAYNFLQSVRLMADAAVSFTDNCVVGIEPRRDNIKAGLERSLMLVT
                     ALAPKIGYDNAAKIAKTAHKNGTTLKQEAVGGGYVTAEEFDAIVRPEDMIAPK"
BASE COUNT          542 a         1008 c         1123 g          676 t
ORIGIN      
        1 cgatcagggc gccaatacgc tccttcattt cccgcgccgc cttgttggtg aaggtgacgc
       61 agaggatctg tcccggccag gcgcggcggg tggccaggat atgggccagg cgcgtggtca
      121 gcacccgcgt cttgccggtg cccgcgccgg ccagcaccag caccgggccg tccaccgctt
      181 ccacggcttc gcgctgttcc ttgttcaggc cttgaaggta gggcgggtcg cgcgggacgg
      241 gcgcggcgga ttgttcttcg aacgcggagt ccaaagggtc ggaatagcgg ccgccatagc
      301 cgctcatggg caggaatcgg ggtctgggga catgagaaag attttagaac gcgggggccg
      361 caaatcccac ttatttctga tcgtcgctca gtttatggcc cgacaggcgc tgatccgcct
      421 tgtccttgcg cgtctcggcc aggttccgca gggccttggg cgtgccgtgc gccacgcggt
      481 tggcctgggc ggtcttgtct ttttccgccc gggccttggc cttgcgggcg cggcgcagat
      541 tgacgatctc agccattttc gcgcgcctgc gttcgggcat aggcagggcg gctgatgatg
      601 cggtttacat agccctccag caggtcggtc ttttccagca gcggcgaacc caggaacatt
      661 ttgaaggtgg tgccgatcag aatgtccacg gcgctgaact tgtcgcccag gatatagggg
      721 ccctgttgca gggtggcgtt gacgaattcc aacacctcat cggccttgac ccagctggcg
      781 gtgccgcgcg ggatctccca tttcatatag gcgctcatcc aggccggctc catcactccg
      841 gcataatagg acagccaact gacataggcg ccgcgcttgg catcgcccac caccgggcca
      901 atgccgttct gcgggaaacg gtcggtgaga taaagcgcga tggcggtgga ttcgaacacc
      961 agggtatcgc cgtccttcag ggccggcgac ttgccgtggg gatggggatt ttccggatcc
     1021 acgccgcccg tgccgtcggc gcggcggata ttggcgatac ggtggatctc gtagggtgtg
     1081 cccagctctt ccagcaggaa gaggaagcgg gacgagcggg tgcggggatg atgatagagt
     1141 gtgatcatcc ggcaaggcta ttgcctggcg gcgagggcgt aaagcctgag cgcgctggcc
     1201 agcgggcgct ctccgcgcga tgcgccaatc tgggccacca atgctgccag gctttggccg
     1261 tcgcgcttgg cggcggcatc gattaccgcc cagaattccg cctccagtgc cacgctggtg
     1321 cgatgacccg acagggaaaa ggaacgtttt ttcagcatcg gcggatgctc cgccagtcca
     1381 ggatcgccag ttcccgcgcc agcttggggc ctccggggcg gggtggcagc agcaggcgcg
     1441 gctttttcaa ttttgtgacg gcgcccgccg caatcacggc attgcggttc acccagccgt
     1501 cggtgtccag cagccgcacc ttgccccacc gcttgcgcat ggtgcggacc agatcgtcgg
     1561 gggtggaatc ctcgtcgccg tccacgatca cattcatcaa gaacagcgcg ccgcgcgtct
     1621 tcagccgcga tttcgccagt ttgaagaagg ccggctgttt gaatttctcc ggcatgccgc
     1681 cctcgccgaa ggcatccagc acgatggcgt cgtggcgacg gcggtgcttg cgcaaatagg
     1741 cgatgccgtc cgcgacatgg cagggaatct cggcgggcag atggaaatag tcccgcgcaa
     1801 tgtcgaagga cagtttgtgg atgtccacga tggtcaccgc cacgccgccg cgagcgagca
     1861 tggtggccaa ggtgccgccg ccgcagccga tcatcagcac gtctttgctt ttggcctggc
     1921 gcaggaaggc atacatggca tggatatagt cggcggtgct gacgccgcgc gcatcgctgg
     1981 cgctctggtg atagtctttt tgccagtagg acacgcgtcc ggtgcggttg tcctggacga
     2041 tgacatgccc cggtgatggt gatgtgcggt tgcgtgttat cggacttctc cctctccccc
     2101 tccgggggag agggtcgggg tgagggggag cgtgtggcgt cgccccctca cccttgccct
     2161 ctcccccgga gggggagagg ggattcactt cggtgcgatc atgtcttcgg gccggacgat
     2221 ggcgtcgaat tcctcggccg tgacatagcc gccgcccacc gcttcctgct tcaaggtggt
     2281 gccattcttg tgcgcggtct tggcgatctt ggcggcgttg tcatagccga tcttgggcgc
     2341 cagcgccgtt accagcatca gcgagcgttc cagcccggcc ttgatattgt cgcggcgcgg
     2401 ctcgatgccg accacgcaat tgtccgtgaa gctcacggcc gcatcggcca tcaggcggac
     2461 cgactgcagg aagttatacg ccatcaccgg attgtagacg ttcagctcga aatggccctg
     2521 gctgtcggca aaggtcagcg ccgcattgtt gccgaaaatc tgcacgcaga cctgggtcag
     2581 ggcttcgcat tgggtgggat tgaccttgcc cggcatgatg gaggaacccg gctcgttttc
     2641 cggcagcgcc aactcgccca ggccggaacg cgggcccgaa cccagcagac ggatgtcatt
     2701 ggcgattttg aacagactgg cggccaccgt gttgatggcg ccgtgactga agaccatggc
     2761 gtcatgggcg gccagggcct cgaacttgtt gggcgcggtg gtgaaatgca ggcccgtaat
     2821 cttggcgata cgctcggcca ccatcttgtc gaaaccgatg ggtgcgttca gcccggtgcc
     2881 cacggcggtg ccgccctggg ccagttccat cagcttgggc ataccttgtt cgatgcgggc
     2941 gatgccgccc gaaacctgcg cggcatagcc ggaaaattcc tggcccaagg tgatcggcgt
     3001 ggcgtcctgg gtatgggtgc ggccaatttt gataatgtcg gcccaggcgg tgaccttggc
     3061 ggccaacgct gtgtgcaggt gtttcagcgc cggcagcagc cggtggtgaa tctcctcggc
     3121 gcaggcgatg tgcatggcgg tgggataagt gtcgttggac gactggctca tattgacgtg
     3181 atcgttggga tggaccggtt tcttggagcc catcaccccg cccatcattt cgatggcgcg
     3241 gttggagatc acttcattgg cattcatgtt ggactgggtg cccgagccgg tctgccacac
     3301 catcagcggg aaatgctcgt ccagcttgcc gtcgatcact tcctgggcc
//
LOCUS       DATMDK010000247         2102 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1958112,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000247 DATMDK010000000
VERSION     DATMDK010000247.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2102)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2102)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2102
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1958112"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            161..484
                     /locus_tag="VNN98_04765"
     CDS             161..484
                     /locus_tag="VNN98_04765"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61438.1"
                     /translation="MTKEEITAWALANGWQMIDGVPSLTKPAAPHPAIVRLVLKATVA
                     SVEIKKPAGKWEKVSSESYSKIEADPETGMPGSLGFTTISGLTLLMRDNKDRQMFARM
                     GGMKR"
     gene            557..>2102
                     /locus_tag="VNN98_04770"
     CDS             557..>2102
                     /locus_tag="VNN98_04770"
                     /EC_number="3.6.4.-"
                     /inference="COORDINATES: protein motif:HMM:NF012492.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HWM61439.1"
                     /translation="MAFPTTHPALSRALIERDYKDATPVQMAVAAEEAEGRDLLVSAQ
                     TGSGKTIAFGLALAETLLDGAETMGPAGDPLALIIAPTRELALQVQRELSWLYHYAGA
                     RIVSCVGGMDPGRERRDLAGGAHIVVGTPGRLRDHLERRALKVSGLKAVVLDEADEML
                     DMGFREDLQFILETTPADRRTLLFSATLPKAIVTLATHYQKDALRIATRSDVAGHADI
                     EYRAVRIAGNKIERAVVNLLRFMEPPGALVFCNTRNAVRHMEAQLTERGFSCVALSGE
                     LSQSERNHALQALRDGRARVCVATDVAARGIDLPSLSLVIHADLPNDAQVLQHRSGRT
                     GRAGKKGVSVLLVPPSRRRRAEEMLGRARITAIWGDAPSAEAIRKVDQERLLQNPMLV
                     EPGSEDDLAMADELLKLRSPRQLAAAFVKMYRAGLPAPEEIEDEPFQRAPAREHKPRH
                     PREDRAPREEQPRREFKPRPEGPREPRPRPHQTAERQHAPTHERGAAPGGMANGVWFR
                     LNVGRER"
BASE COUNT          382 a          688 c          681 g          351 t
ORIGIN      
        1 ggcggcagag aggaggcgtt tcatggtctt ttactttcaa atgcacgccg atctcggcgc
       61 gcctgcgacg cgaattgcgt cgttgatctg cgataatgat ccttgccgat gaacccggtc
      121 tgaacgagac tcgcagccgc aattcatcca aaaggccgcc atgaccaagg aagaaatcac
      181 cgcctgggcg ctggccaatg gctggcagat gatcgacggg gttcccagtc tgaccaaacc
      241 cgcagccccc catcccgcca ttgtgcggct ggtgctgaag gccaccgtcg ccagcgtcga
      301 gatcaagaaa cctgccggca agtgggagaa agtctccagc gaaagctatt ccaagatcga
      361 ggccgacccg gaaaccggca tgcccggtag cctcggtttc accacaattt ccgggctcac
      421 cctgctgatg cgagacaata aggaccgtca aatgttcgcg cgcatgggcg gtatgaagcg
      481 ctgatttcgg gttcccctat ctttttcggg aagtagggat aaagaggggg cgaaattccc
      541 ctcgaaagtt cctcctttgg ccttccccac cacccatccc gctttgtccc gcgccctgat
      601 cgagcgcgat tacaaggacg ccacccccgt gcagatggcg gtggcggcag aggaagcgga
      661 gggccgcgac ctgctggtct ctgcccagac cggctcgggc aaaaccatag ccttcggcct
      721 ggcgctggcc gagaccttgt tggacggcgc cgagaccatg ggcccggcgg gcgatcccct
      781 ggcgctgatc atcgcgccga ctcgcgagct ggcgctgcag gtgcagcgcg aactcagctg
      841 gctgtatcac tatgccggtg cgcgcatcgt ctcctgcgtt ggcggcatgg atccgggccg
      901 cgagcgccgc gatctggcgg gtggcgcgca tatcgtggtc ggcaccccgg gccgtctgcg
      961 cgatcatctg gaacgccgcg ccctgaaagt gtcgggcctg aaagcggtgg tgctggacga
     1021 agctgatgaa atgcttgaca tgggctttcg cgaggatctg cagtttatcc tggagaccac
     1081 gccggcagac aggcgcacgc ttttgttctc ggcgactttg cccaaggcca tcgtcaccct
     1141 ggcaacgcat taccagaagg atgcgctgcg catcgccacc cgcagcgacg tggccggtca
     1201 cgccgacatc gaatatcgcg ccgtccgcat cgcgggcaac aagatcgaac gcgccgtggt
     1261 caatctgctg cgcttcatgg agccgccggg cgcgctggtc ttttgcaaca cccgcaatgc
     1321 cgtgcgccac atggaagcgc agctgaccga gcgcggcttt tcctgtgtgg cgctgtcggg
     1381 cgaactgtcc cagagcgagc gcaatcatgc gctgcaggcc ttgcgcgatg gccgcgcccg
     1441 ggtctgcgtc gccaccgacg tggcggcgcg cggcatcgac ctgcccagcc tcagtctggt
     1501 cattcatgcc gatctgccca atgacgccca ggtgctgcag catcgcagcg gccgcaccgg
     1561 acgcgccgga aaaaagggcg tcagcgtctt gctggtgccg ccgtcacgcc gccgccgcgc
     1621 cgaggaaatg ctgggacgcg cccgcattac cgcgatctgg ggtgatgctc cgtcggcaga
     1681 ggccatccgc aaggtggatc aggagcgcct gttgcagaat ccgatgctgg tcgaacccgg
     1741 cagcgaagac gatctggcga tggccgatga actgctgaaa ttgcgcagcc cgcgccagct
     1801 ggcggcggct tttgtcaaaa tgtaccgcgc cgggttgccc gccccggaag agatcgagga
     1861 cgagcccttt cagcgcgcgc cggcgcgtga gcacaagcct cgtcatccgc gtgaagaccg
     1921 cgccccgcgc gaagaacagc cgcggcgcga attcaagcca cgtccggaag gtccgcgcga
     1981 gccgcggccc aggccgcatc agacggcaga gcgccagcat gcgcccaccc atgagcgtgg
     2041 cgccgcgccg ggcggcatgg cgaatggcgt ctggttccgc ctgaatgtcg ggcgcgagcg
     2101 ca
//
LOCUS       DATMDK010000248         4531 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2170324,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000248 DATMDK010000000
VERSION     DATMDK010000248.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 4531)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4531)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4531
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2170324"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..490)
                     /locus_tag="VNN98_04775"
     CDS             complement(<1..490)
                     /locus_tag="VNN98_04775"
                     /inference="COORDINATES: protein motif:HMM:NF013714.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HWM61440.1"
                     /translation="MLIESAVSNEISTLLSHRLRAETQGEVLFDDGARGRYATDASIY
                     QVMPVGVFVPRTDRDVAIAIDIARDLKVPVLPRGAGTSQCGQTVGAGLVIDNSKYRRA
                     ILDVDTENRTAKVEPGLVLDHLNAALKQHGLWHPVDVSTSAQATLGGMAGNNSCGSRS
                     IAY"
     gene            612..1853
                     /locus_tag="VNN98_04780"
     CDS             612..1853
                     /locus_tag="VNN98_04780"
                     /inference="COORDINATES: protein motif:HMM:NF012488.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class V-fold PLP-dependent
                     enzyme"
                     /protein_id="HWM61441.1"
                     /translation="MLTLDFHPTGHHFLQIPGPSPVPDRILRALSLPTIDHRGPEFGA
                     LGLKLTAGIKRIFKTVHPVMIYPSSGTGAWEAALVNVLSPGDHVVMYETGQFAALWAR
                     LAGRLGLSTEILEWRGADAELPEAPGWRHGVQASLIEERLSADKEHRIKAVCVVHNET
                     STGVTSDIAAVRKAIDAAKHPALLIVDSISGLASADYRHDEWGVDVTISGSQKGLMLP
                     PGLGFNALSPRAIEASKTAKLPRSYWAWDEIIEMNKTGYFPYTPGTNLLYGLHEALEM
                     IEAEGLDNIFARHKRWSAAVRGAVTAWGLAVQCADKDLHSPVLTGIIVPKGIDADKLR
                     KMILERFDLSLGAGLGKLKGRTFRIGHLGNSNDLTLLATLAGCEMGLKLAGVNLAGRG
                     VDAAMEYFAGHPSQSGVTKAP"
     gene            1890..3128
                     /locus_tag="VNN98_04785"
     CDS             1890..3128
                     /locus_tag="VNN98_04785"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HWM61442.1"
                     /translation="MKLFRPTGIVLVMLSLMYLITYIDRVNVSTAAAGFAKDFHLSKT
                     QIGLVFSAFAYPYLLFQIIGGWVSDRFGTRRTLIACSLIWAFATVLTGLAGGLVSLLA
                     ARLLLGLGEGATFPAATGAMARWVSPADRGFAQGITHAAARLGNALAPGLIVAVMAVY
                     GWRASFFVCAAISFVWLGAWMLIFRENPLEHPGLTQEERDALPAPKPKGQAVPWGRLF
                     KRMAPVTIVYFCYGWTLWLFLSWIPQYFLHSQNLNLSKMALFSSAVFLAGVIGDTLGG
                     IVTDRIYTRTGDLRRARSLMVAVCMGATCLSLVPLMFTHDVMLSLLCLSAGFFFAEMT
                     IGPMWAVPMDIAPDASGTASGIMNSGSALAAIISPVVGGFLIDKTGNWQLPFVGSMVL
                     MLVGMALSFRMRPDQRLDIT"
     gene            3377..>4531
                     /locus_tag="VNN98_04790"
     CDS             3377..>4531
                     /locus_tag="VNN98_04790"
                     /inference="COORDINATES: protein motif:HMM:NF019604.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HWM61443.1"
                     /translation="MSSASVTQPSRQLSGASNGQAAGGMKPTDIANPDYFHKVVDCQW
                     ACPAHTPVPEYIRMIAAGRYADAYMVNWHSNVFPGVLGRTCDRPCEPACRRSRVEEVT
                     GKAEPVAICRLKRVAADNKDDVKHRMPAPAAQKNGKRVALIGAGPASLTVARDLLPLG
                     YTVVLYDGDAAAGGMMRTQIPKFRLPETVLNEEVNYILDLQPELRLGQKISSLKSLLA
                     ENYDAIFVGCGAPRGRELEIPGRKEAGANVHIGIDWLASVSFGHTTSIGKRVIVLGGG
                     NTAMDCCRTSRRLGGEQVDVVVRSGFAEMKASPWEKDDAMHEGIPIHNFLVPKQFLHA
                     HGKLTGVKFEKVKAGTDAKGRRSLVPSGEPDVIMECDDVLVAVGQENAFPW"
BASE COUNT          809 a         1435 c         1432 g          855 t
ORIGIN      
        1 cgtaggcgat ggagcgggag ccgcaactgt tgttgccggc catgccaccc agggtggcct
       61 gggcgctggt ggagacatcc acaggatgcc acaagccatg ttgcttcaac gcggcgttga
      121 gatgatccag caccaggccc ggctcgacct tggcggtgcg gttctccgta tcaacgtcga
      181 ggatggcacg gcgatatttg ctgttgtcga tcaccaggcc cgcgcccacc gtctggccgc
      241 actggctggt gccggcgccg cgcggcagca ccggcacttt cagatcgcgc gcaatgtcga
      301 tggcgatggc cacatcgcgg tcggtgcgcg gcacgaatac gcccaccggc atgacctgat
      361 agatcgatgc gtctgtggca tagcggcccc gcgcgccgtc atcgaacagc acttcgccct
      421 gcgtttccgc acgaagacgg tgcgataaga gggtgctgat ttcgttggaa accgcggatt
      481 cgatcagcac gaggcgtcag gccttaaaag ggcacggcag tggtgctgcc atcttcaatt
      541 tatgaagttt gcaattctga tacaggaacc atagcatttt gaccaaagaa cacaaagaca
      601 acaggcaaat catgctcacg ctcgatttcc atcccaccgg gcatcacttc ctccagatcc
      661 ccgggcccag tccggtgccg gaccgcatcc tgcgcgcgct cagccttccc accatcgacc
      721 atcgcggccc ggaattcggc gccctggggc tgaagctgac ggccggcatc aagcgcatct
      781 tcaagaccgt gcatccggtg atgatctacc cctcttccgg caccggcgcc tgggaagcgg
      841 cgctggtcaa tgtgctgagc cccggcgacc atgtcgtgat gtatgagacc ggtcagttcg
      901 ccgcgttgtg ggcgcggctg gcaggacgcc tgggcctcag caccgaaatc ctggaatggc
      961 gcggcgccga tgccgagttg ccggaagcgc cgggctggcg ccacggcgtt caggcgtcgc
     1021 tgatcgaaga gcggctgagc gcggacaagg aacaccgcat caaggcagtg tgcgtggtcc
     1081 ataacgaaac ttccaccggc gtcacctccg acatcgccgc cgtgcgcaaa gccatcgatg
     1141 ccgcaaaaca ccccgcgctg ctgatcgtgg acagtatctc gggcctcgcc agcgccgact
     1201 accgccatga cgaatggggc gtggacgtca ccatcagcgg ctcgcaaaaa ggcctgatgt
     1261 tgccgcccgg attgggattc aacgctctgt cgccccgcgc catcgaagcc tccaagaccg
     1321 ccaagctgcc ccgctcctac tgggcctggg acgaaatcat cgaaatgaac aagacgggct
     1381 atttccccta cacgcccggc accaacctgc tgtacggcct gcacgaggcg ttggagatga
     1441 tcgaagccga ggggctcgat aatatttttg cccgccacaa aagatggtca gcggcggtgc
     1501 gcggcgcggt tacggcctgg ggcctggcag tgcaatgcgc cgacaaggat ctgcattccc
     1561 cggtgctgac cggtatcatc gttcccaaag gcatcgacgc cgacaagttg cgcaagatga
     1621 tcctggagcg tttcgacctg tcgctgggcg cggggctggg caagcttaag ggccgcacct
     1681 tccgcatcgg ccatctgggc aacagcaatg acctgacttt gctggccacc ctggccgggt
     1741 gcgaaatggg cctgaagctg gcgggggtca atctggcggg ccgcggcgtg gacgcggcca
     1801 tggaatattt cgccggccat ccgtcacaaa gcggtgtcac gaaggcgcca taataggaag
     1861 gcgccaacga gcgcgcggga ggaatcgaca tgaagctctt tcgccccacc ggcatcgtgc
     1921 tggtgatgct gtcgcttatg tacctgatca cctatatcga ccgggtcaat gtcagcaccg
     1981 cggcggccgg cttcgccaag gacttccatc tttccaagac ccagatcggg ctggtcttct
     2041 ccgccttcgc ttatccttat ctgctgtttc agatcatcgg cggctgggtc agcgaccgct
     2101 tcggcacccg ccgcaccttg atcgcctgca gcctgatctg ggccttcgcc acggtactga
     2161 ccggcctggc cgggggactc gtttcgctgc tggcggcgcg gctgctgctg ggcctgggtg
     2221 aaggcgcgac ctttcccgcc gccaccggcg cgatggcccg ctgggtttcg cccgcggatc
     2281 gcggtttcgc gcaaggcatc acccatgcgg cggcgcggct gggcaatgcg ctggcgcccg
     2341 gactgatcgt ggcggtgatg gcggtgtatg gctggcgcgc ctcattcttt gtctgcgccg
     2401 ccatcagctt tgtctggctg ggcgcctgga tgctgatctt ccgggaaaat ccgctggagc
     2461 atccgggcct gacgcaggag gaacgcgatg cgctgccggc gcccaagcca aagggccagg
     2521 ccgtgccctg gggccggctg ttcaagcgca tggcgcccgt caccatcgtc tatttctgtt
     2581 atggctggac cctgtggctg ttcctcagct ggattccgca atatttcctg cacagccaga
     2641 atctaaacct cagcaagatg gcgctgtttt cttccgccgt ctttctcgcc ggtgtgattg
     2701 gagacacgct gggcggcatc gtcaccgacc gcatctatac ccgcactggc gatctgcgcc
     2761 gcgcccgcag cctgatggtc gccgtctgca tgggcgcaac ctgcctgtcg ctggtgccgc
     2821 tgatgttcac gcatgacgtg atgctgtcgc tgctgtgcct gtcggcgggc ttcttcttcg
     2881 ccgagatgac catcggtccg atgtgggcgg tgccgatgga tatcgcacct gacgcctcgg
     2941 gcaccgccag cgggatcatg aattcgggtt cggcgctggc ggcgatcatc tcgcccgtgg
     3001 tcggcggctt tctgatcgac aagaccggca actggcagct gccctttgtc ggcagcatgg
     3061 tgctgatgct ggtcggcatg gccctgagct ttcgcatgcg gcccgaccag cggctggaca
     3121 tcacctgatc cggttgcact gcagcggaat taacaccctg taacggaatg ttttttggct
     3181 ttggcccgcg ccggggctgt ccggcccttt tgcctgcctt ttgccctcgc tagtatatgt
     3241 cacagggaaa cagggaagca gccggccata cccccggaca tgctgtcgag caagaagagc
     3301 caggaccgca tatagctgaa acatccgtca gacgttggtc cgcatcaggg catgtcattg
     3361 ggaaaaaatc agcgccatga gtagtgcatc cgtaacgcaa ccgtcccgcc aactgtcggg
     3421 cgcgtcgaat ggccaagctg ccggtgggat gaagcccacc gacatcgcca atcccgatta
     3481 ttttcacaag gtggtcgact gccagtgggc gtgtcccgct catacgccgg tgcccgaata
     3541 tatccgcatg atcgcggcgg ggcgttatgc cgacgcctat atggtcaatt ggcattccaa
     3601 tgtgtttccc ggcgtgctgg gccgcacctg cgaccggccc tgcgagcccg cctgccgccg
     3661 cagccgcgtg gaagaagtta ccggcaaggc cgagcctgtc gccatctgcc gcctcaagcg
     3721 cgtcgccgcc gacaacaagg acgatgtgaa gcaccgcatg ccggcgccgg cagcccagaa
     3781 gaacggcaag cgcgtcgccc tgatcggcgc cggtcccgct tcgctgaccg tggcgcgcga
     3841 cttgctgccc ttgggctata ccgtggtgct gtatgacggc gatgcggcgg ccggcggcat
     3901 gatgcgcacc cagattccca aattccgcct gcccgagacc gtgctgaacg aggaagtgaa
     3961 ctacattctg gacctacagc cggaattgcg gctgggccag aagatcagtt cgttgaaatc
     4021 cctgctggca gagaattacg acgccatttt tgtcggctgc ggcgccccgc gcggacgtga
     4081 gttggaaatt cccggccgca aggaagccgg cgccaacgtc catatcggca tcgactggct
     4141 ggcctcggtg tccttcggcc ataccaccag catcggcaag cgcgtcatcg tgctgggcgg
     4201 cggcaacacc gcgatggatt gctgccgcac ctcgcgccgg ctgggcggag agcaggtgga
     4261 tgtcgtggtc cgttccggct ttgcggaaat gaaggcgagc ccttgggaaa aagatgacgc
     4321 gatgcatgaa ggcattccga tccacaattt cctggtgccc aaacagttcc tgcacgccca
     4381 cggcaagctg accggggtga agttcgagaa agtgaaggcg gggacggacg ccaagggccg
     4441 ccgcagcctg gtgccctcgg gtgaaccgga tgtgatcatg gaatgcgacg atgtgctggt
     4501 ggcggtgggc caggagaacg ctttcccctg g
//
LOCUS       DATMDK010000249         2215 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2853639,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000249 DATMDK010000000
VERSION     DATMDK010000249.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2215)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2215)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2215
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2853639"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(22..1731)
                     /gene="ureC"
                     /locus_tag="VNN98_04795"
     CDS             complement(22..1731)
                     /gene="ureC"
                     /locus_tag="VNN98_04795"
                     /EC_number="3.5.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020045033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009039 - urease activity [Evidence IEA];
                     GO_function: GO:0016151 - nickel cation binding [Evidence
                     IEA];
                     GO_process: GO:0019627 - urea metabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="urease subunit alpha"
                     /protein_id="HWM61444.1"
                     /translation="MAFTIDRAAYAHIYGPTTGDRLRLADTDLIIEVEDDKTIYGEEV
                     KFGGGKVIRDGMGQSQVSRAGGAMDSVITNALILDHWGIVKADVGLRDGRIAAIGKAG
                     NPDVQPGIDIIIGPGTEIIAGEGRILTAGAIDSHIHWICPQQADEAIASGVTTMLGGG
                     TGPAEGTNATTCTPGPWHIARMLQAAEGLPLNVGFFGKGNASLPEGLEEQIAAGACGL
                     KLHEDWGTTPAAIDNCLSVADRMDIGVAIHTDTLNESGFVADTVAAFKGRTIHAFHTE
                     GAGGGHAPDVIKLAGEMNVLPSSTNPTRPYTVNTIDEHLDMLMVCHHLDKRIPEDVAF
                     AESRIRKETIAAEDILHDIGAFSMLSSDSQAMGRVGEVIIRTFQTADKMKRQRGRLAE
                     ERGDNDNFRVKRYIAKITINPAITHGISQHVGSIAVGKIADLVLWKPMFFGVKPDMVL
                     KAGMIAVAAMGDPNASIPTPQPVHYRTMFGGYGAALAATSFTFISGAAAQAGVPEKLK
                     LMRPALAVSGTRNVKKTDMVLNGATPKLEVDSETYEVRADGVLLTCEPATWLPMAQRY
                     FLF"
     gene            complement(1731..2036)
                     /locus_tag="VNN98_04800"
     CDS             complement(1731..2036)
                     /locus_tag="VNN98_04800"
                     /EC_number="3.5.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020045032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0035550 - urease complex [Evidence IEA];
                     GO_process: GO:0043419 - urea catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="urease subunit beta"
                     /protein_id="HWM61445.1"
                     /translation="MIPGEIFPASGSITLNQGRPTLTIKVANSGDRPIQVGSHYHFFE
                     TNDALVFDRDKTRGWRLDVPAGTAVRFEPGQEREVTLVPFAGARTIYGFKARVQGRL"
     gene            complement(2040..>2215)
                     /gene="ureA"
                     /locus_tag="VNN98_04805"
     CDS             complement(2040..>2215)
                     /gene="ureA"
                     /locus_tag="VNN98_04805"
                     /EC_number="3.5.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020045031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009039 - urease activity [Evidence IEA];
                     GO_process: GO:0019627 - urea metabolic process [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="urease subunit gamma"
                     /protein_id="HWM61446.1"
                     /translation="VEGARDGKPVAALMQEGAGVLTRADVMDGVAEMIEEVQVEATFP
                     DGVKLVTVHQPIR"
BASE COUNT          355 a          692 c          729 g          439 t
ORIGIN      
        1 gcactttggt ggcgcgccgc atcagaacag gaaatagcgc tgcgccatcg gcagccaagt
       61 cgcaggttcg caggtcaaaa gcacgccgtc ggcgcgcact tcataagtct ccgaatccac
      121 ttccagcttc ggtgtcgcgc cgttcagcac catgtcggtc ttcttgacgt tccgggtgcc
      181 gctaaccgcc aaggccggcc gcatcagttt cagtttttcc ggtacgccgg cctgcgccgc
      241 cgcaccggag atgaaagtga agctggtggc ggccagcgcc gcgccgtaac cgccgaacat
      301 ggtgcggtaa tgcaccggct gcggtgtcgg gatggaggcg ttgggatcgc ccatcgccgc
      361 caccgcgatc atgcccgctt tcagcaccat gtccggcttg accccgaaaa acatcggctt
      421 ccacaacacc aggtcggcga tcttgcccac cgcgatggag cccacatgtt gggagatgcc
      481 gtgggtgatg gcgggattga tggtgatctt ggcgatatag cgcttgaccc ggaaattgtc
      541 gttgtcgcca cgttcctccg ccaggcggcc gcgttggcgc ttcatcttgt cggcggtctg
      601 gaaggtgcgg atgatgactt cgccgacccg gcccatcgcc tggctatcgg aggacagcat
      661 ggagaaagcg ccgatgtcgt gaaggatatc ctccgccgcg atggtttcct tgcggatgcg
      721 gctttcagcg aaggcgacgt cttcggggat gcgcttgtcg agatggtggc acaccatcag
      781 catgtcgaga tgctcgtcga tggtgttgac ggtatagggg cgcgtgggat tggtggagga
      841 gggcagcaca ttcatctcgc ccgccagctt gatcacgtct ggggcatggc cgccgcccgc
      901 gccttcggtg tggaaggcat gaatggtgcg gcccttgaac gccgccaccg tgtcggcgac
      961 gaaaccgctt tcgttcaagg tgtcggtatg gatggcgacg ccgatatcca tgcggtcggc
     1021 gaccgacagg caattgtcga tggcggctgg tgtggtgccc caatcctcat gcagtttgag
     1081 gccgcaggcc cccgccgcga tctgttcttc cagcccttca ggtagcgagg cattgccctt
     1141 gccgaaaaag cccacattca gcggcagtcc ttccgccgcc tgcagcatgc gggcgatatg
     1201 ccagggtccg ggcgtgcaag tggtggcgtt ggtgccttcc gcaggccccg tgccgccgcc
     1261 cagcatggtg gtgacgcccg aggcgatggc ttcgtcggcc tgctgcgggc agatccagtg
     1321 gatgtggctg tcgatggcgc ccgccgtcag gatgcgcccc tcgccggcga tgatttcggt
     1381 gccggggccg atgatgatgt cgatgccggg ctggacatcg ggattgccgg ccttgccgat
     1441 ggcggcgatg cgcccgtcgc gcaaaccgac atccgccttg acgatgcccc aatggtccag
     1501 gatcagcgca ttggtgatga cgctgtccat ggcgccgccg gcccggctga cctggctctg
     1561 gcccatgccg tcgcggatca ccttgccgcc gccgaacttc acttcctcgc catagatggt
     1621 cttgtcgtct tccacctcga tgatcagatc ggtatcggcc aggcgcagcc ggtcgccggt
     1681 ggtgggaccg tagatatggg cataagcggc gcggtctatg gtgaaggcca tcagagcctt
     1741 ccctgcacgc gggctttgaa gccgtaaatg gtccgtgcgc ctgcgaatgg caccagtgtt
     1801 acttcgcgtt cctggcccgg ctcgaaacgc accgccgtgc cggccggcac gtccagccgc
     1861 cagccacggg tcttgtcgcg gtcgaacacc agcgcgtcat tggtttcgaa gaaatgataa
     1921 tgcgagccga cctggatggg acggtcgccg ctgttggcga ccttgatggt caaggtgggg
     1981 cggccttggt tgagggtgat gctgccgctg gcggggaaga tttcaccggg gatcatgctt
     2041 caccgtatcg gctgatggac agtgacgagc ttgaccccgt cgggaaaggt ggcctcgacc
     2101 tggacttcct cgatcatctc ggcgacaccg tccatcacat cggcgcgggt cagcacgcct
     2161 gcaccttcct gcatcagcgc cgccaccggc ttgccgtcgc gcgcgccttc cacca
//
LOCUS       DATMDK010000250         2140 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_588034,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000250 DATMDK010000000
VERSION     DATMDK010000250.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2140)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2140)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2140
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_588034"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1409)
                     /locus_tag="VNN98_04810"
     CDS             complement(<1..1409)
                     /locus_tag="VNN98_04810"
                     /inference="COORDINATES: protein motif:HMM:NF025214.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HWM61447.1"
                     /translation="MDAGQLYNQALAAQKSGNLAEAERLYRQIANPPPEVLVNLGNVL
                     AAQGRREAAMACYDQALAARADFFEALFNRGNLLLEMKRSEDALDSYERILVFRQDFP
                     GAWNNRGTALRNLQRLEEALASFERAAALAPGHFNALTNRAIVLWDLKRLNDALVAVD
                     RALAVQPGFAEALYVRGNVLRDLRRLDEALAGYEQALAANPAHQFALNGAAQVALTLC
                     DWKRVQALWPRVKENTGGGRALIQPFVLLGYSDDAALQRRCAENYVRLTVPARAALWD
                     GKAYGHERIRLAYLSADFHQHPTAQLMAELFERHDRARFELTAIAFGPDDNGALRARL
                     KRAFDHFEDVRGKSDAEVARLLRAREIDIAVDLNGHTADARAGIFAHRLAPVQVNYLV
                     YPGTTGAAFMDYVLADRIVLPADQQPFFSEKIVHLPDCYQANDATRVVPAPPSRTEAG
                     LPRDGFVFCCFNNSWKITAP"
     gene            complement(1409..>2140)
                     /locus_tag="VNN98_04815"
     CDS             complement(1409..>2140)
                     /locus_tag="VNN98_04815"
                     /inference="COORDINATES: protein motif:HMM:NF013335.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016799 - hydrolase activity, hydrolyzing
                     N-glycosyl compounds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside hydrolase"
                     /protein_id="HWM61448.1"
                     /translation="MLGELGRGDIPVAMGTPAAVNLTAFTQRRYAEGGNFAQAAHPAS
                     VDFVLDQARKYPGQVTLVAIGPLPNIGAMIDKDPTAFRKLKRVVIMGGNIGVLADPYS
                     VAAPIAPHPEWNIKNDIASAQKLFTAGVPLIVMPLDPTANLKLHEVARTALFAHGSML
                     TNILAGLYYEWSAAARAATPTLYDPMTLASLLDPSLCPLTPMHIRVDDAGNTLAEAGS
                     PNAQVCLHSDADAFLRFYVNRVAGR"
BASE COUNT          392 a          695 c          694 g          359 t
ORIGIN      
        1 ggcgcggtga tcttccagct gttgttgaag cagcagaaga cgaaaccgtc cctcggcaat
       61 ccggcttcgg tccgcgacgg cggcgccggc acaacgcgcg tggcgtcgtt ggcctggtag
      121 caatccggca ggtgcacgat cttttcgctg aaaaagggct gctggtcggc cggcagcacg
      181 atgcggtcgg ccagcacata atccatgaaa gccgcgccgg tggtgccggg atagaccaga
      241 taattcacct gcaccggcgc gaggcgatgc gcgaaaatcc cggcccttgc gtcagcagta
      301 tggccgttca ggtccaccgc aatgtcgatc tcacgcgccc gcagcaaccg cgccacttcg
      361 gcgtcgcttt tgccccgcac atcctcgaaa tggtcgaagg cccgtttcaa acgcgcgcgc
      421 aacgcgccgt tgtcatcggg cccgaaagcg atggcggtga gttcgaagcg ggcacggtca
      481 tggcgctcga acaattcggc catcaactgg gcagtgggat gctggtggaa gtcggccgac
      541 agataggcca gccgtatccg ctcatggcca taagccttgc cgtcccacaa ggccgcgcgc
      601 gccggaacgg tcagccggac ataattctcg gcgcagcggc gctgcaacgc cgcatcatcg
      661 ctgtaaccca acaacacaaa gggctggatc aaggcgcgcc cgccgcccgt attctctttc
      721 acccgcggcc acaaggcctg cacgcgcttc cagtcgcaca acgtcaacgc cacctgcgcc
      781 gcgccgttca gggcaaactg gtgcgccggg ttggcggcga gggcctgctc atagccggcc
      841 agggcctcat ccagccgccg caggtcgcgt agtacattgc cccgcacata cagcgcctcg
      901 gcaaagcccg gctgcactgc cagtgcacgg tcgaccgcca ccagggcgtc gttcaggcgc
      961 ttcaagtccc acagcacgat ggcgcggttg gtcagggcat tgaaatgtcc cggcgccagg
     1021 gctgccgccc gttcgaagct ggccagggcc tcttccagcc gttgcagatt gcgcagcgcg
     1081 gtgccgcgat tgttccaggc gccggggaaa tcctggcgga agacgagtat ccgctcataa
     1141 ctgtccagtg cgtcctcgga acgtttcatc tccagcagca ggttgccgcg attgaacagc
     1201 gcctcgaaga aatcggcgcg cgccgccagc gcctggtcat agcaggccat cgctgcctcg
     1261 cgccggccct gggcggccag aacattgccc agattgacca gcacttcggg tggcgggttc
     1321 gcgatctggc gatacagccg ctcggcctcc gccaggttgc cgctcttctg cgccgccagc
     1381 gcctgattat aaagctgccc cgcgtccatc aacgtccggc cacgcggttg acataaaagc
     1441 gcaggaaggc atcagcatcg gaatgcaggc aaacttgcgc gttgggcgag cccgcttcgg
     1501 ccaaagtgtt gccggcatcg tccacccgga tgtgcatggg tgtcagcgga cacagcgacg
     1561 ggtccagcag cgaggccagg gtcatgggat cgtaaagtgt gggcgtggcg gcgcgggcgg
     1621 cggcgctcca ttcatagtac agcccagcca ggatgttggt cagcatgctg ccatgggcga
     1681 acaaagcggt gcgcgccact tcatgcagct tgagatttgc ggtgggatca agcggcatca
     1741 cgatcagcgg cacgccggcg gtgaacagct tctgggccga agcgatgtcg ttcttgatgt
     1801 tccattcggg atgcggcgcg atcggcgcgg ccacgctata gggatccgcc aagaccccga
     1861 tgttgccgcc catgatcacc acccgcttca gcttgcggaa agcggtggga tccttgtcga
     1921 tcatcgcgcc gatattgggc agcggcccga tggcgaccaa ggtgacctgg ccgggatatt
     1981 tgcgcgcctg atccagcacg aagtccacgg acgccggatg ggctgcctgc gcgaagttgc
     2041 cgccctcggc ataacgccgt tgggtgaagg cagtgaggtt gacggcggca ggtgtgccca
     2101 tggcgacggg aatgtcgccg cggcccagct cgcccagcat
//
LOCUS       DATMDK010000251         2887 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1717582,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000251 DATMDK010000000
VERSION     DATMDK010000251.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2887)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2887)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2887
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1717582"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..557
                     /locus_tag="VNN98_04820"
     CDS             <1..557
                     /locus_tag="VNN98_04820"
                     /inference="COORDINATES: protein motif:HMM:NF020390.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF1800 family protein"
                     /protein_id="HWM61449.1"
                     /translation="AASPHTATHVARKLATHFVADTPPPALIARLRANYLKSDGDLAL
                     LAKTLVESPEAWSAEQEKFKTPNEFMLSSYRAVGAVPADPAREVVQPLTAFGQRPYAA
                     PQPNGWSDLAGDWAAPDALVKRLTWASQFSGAYAPGMGTPIDAAEAALGARMSAALRT
                     ALARAESRVEAFTILLMSAEFQRR"
     gene            554..1729
                     /locus_tag="VNN98_04825"
     CDS             554..1729
                     /locus_tag="VNN98_04825"
                     /inference="COORDINATES: protein motif:HMM:NF019040.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1501 domain-containing protein"
                     /protein_id="HWM61450.1"
                     /translation="MTHKLLPSRRRALQLSAGLGATFLLTPAFAAASKRKLVVIVCRG
                     AMDGLSVMPPVGDANYAALRGAIAIPADQALKLDGDFALHPKLTAIYDMVKAGQARLA
                     PAVAIPQRIRSHFEAQDLLESGGQQLYGTTTGWLNRALSAGGQSITALSVGAQEPMIL
                     RGPTPIQSWSPGGRMTDDLGRVATILQDLYKTDPLLGPAFASGLQTEATANALNGGQP
                     FEGRDVRTFAVTAAKFLTADGGPSVAVLSADGFDTHANQGAANGQLAIRLKTLDDVVG
                     GLQHGLGPSWNDTVVLVVTEFGRTARINGTGGTDHGTASTMILAGGALKRGGIVGDWP
                     TLQQAKLFEDRDLAPTLDVRQVFKGVLMDHLGVGRRALEDTVFPGSAGATGISNLVA"
     gene            1756..1980
                     /locus_tag="VNN98_04830"
     CDS             1756..1980
                     /locus_tag="VNN98_04830"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61451.1"
                     /translation="MKIFSLVVVCVVGGTVLLIGSSYLAMYLKLFFYSMRDSPGPTLA
                     IAGGAGALLLLGNSRTLREKLAFPRFRAGR"
     gene            complement(2020..>2887)
                     /locus_tag="VNN98_04835"
     CDS             complement(2020..>2887)
                     /locus_tag="VNN98_04835"
                     /inference="COORDINATES: protein motif:HMM:NF012428.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="aminotransferase class III-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HWM61452.1"
                     /translation="ETALKLARKWGYAVKGVPKDRAEIIVCENNFHGRTIAIVGFSSD
                     PASREGFGPFPSGFKMVPFGDAAALEAAIGPNTVAFLTEPIQGEAGVIIPPPGYLKQA
                     RALCTRHNVLFILDEIQTGLGRTGKLLAEEHEGVEADITVIGKALAGGFYPVSAVLSN
                     SEAMSVLRPGEHGSTFGGNPLACAVARMALKVLVEEGMIENAARIGGYLKSRLETIRS
                     PLMKDVRGAGLMIAIELHPDAGGARPICEKLLARGLLAKETHEHTIRIAPPLILTQDQ
                     ADWIAGQFAMVL"
BASE COUNT          494 a          907 c          938 g          548 t
ORIGIN      
        1 tggcggccag tccgcacacc gcgacccatg tcgcccgcaa gcttgccacc cactttgtcg
       61 ccgatacgcc gccgccggcg ctgatagcgc gcttgcgtgc gaattatttg aagagcgatg
      121 gcgatctcgc gctattggcg aagacattgg ttgaatcccc cgaagcctgg agcgcggaac
      181 aggaaaaatt caaaacgccc aacgaattca tgttgtccag ctatcgcgca gtgggagctg
      241 tccccgccga tccggcacgg gaggtggtcc aacccctgac cgcgttcggc cagcggcctt
      301 atgcagcgcc ccagcccaac ggctggtccg atcttgccgg cgactgggcc gcgccggacg
      361 cgctggtcaa gcggctgacc tgggcgtcgc aattttccgg cgcctatgcg cccggcatgg
      421 gcacgcccat cgacgccgcc gaggcggcgc tgggcgcgcg catgagcgcg gccctgcgca
      481 cggcgttggc gcgggcggaa agccgggtcg aggccttcac cattcttttg atgtcagcgg
      541 agtttcagcg cagatgacgc acaaactttt gccgtcgcgg cggcgcgcct tgcaattgag
      601 cgccggtttg ggcgccacat tcctgctgac gccggccttt gccgcggcca gcaaacgcaa
      661 gctggtggtg atcgtgtgcc gcggcgcgat ggatgggctt tcggtgatgc cgccggtggg
      721 ggatgcgaac tatgcggcgc tgcgcggtgc tatcgcaatt cccgccgacc aggcactcaa
      781 actggacggc gacttcgcgc tgcatcccaa gctgaccgcg atttacgaca tggtgaaggc
      841 cgggcaggcc agactggccc ccgcggtcgc cattccccag cgtattcggt cgcattttga
      901 agcccaggat ctgcttgaaa gcggcgggca gcagctttac ggcaccacga ccgggtggct
      961 caatcgcgcc ttgtcggcgg gcggccaatc gatcacggcg ctgtccgtgg gggcccagga
     1021 gccgatgatc ctgcgcggcc ccacacccat tcaatcctgg tcgcccggcg ggcggatgac
     1081 ggacgatctg ggacgggtcg ccacgatttt gcaggatctc tacaaaaccg atccgctgct
     1141 gggtcccgct ttcgcatccg gattgcagac cgaggcgacg gcgaacgcct tgaacggcgg
     1201 ccagcctttt gagggacggg atgtgcggac ctttgcggtg acggccgcga aattcctcac
     1261 cgcggacggc ggcccgtccg ttgctgttct atcggcggat ggctttgata cccacgccaa
     1321 tcagggcgcc gccaacggcc aactcgccat ccggctcaag accctggatg acgttgtcgg
     1381 cggcctgcag cacgggctgg ggcccagttg gaacgatact gtggtcctag tcgtgaccga
     1441 gtttggccgc acggcgcgca tcaatggcac cggcggaacc gaccatggca cggcatccac
     1501 catgatcctg gccggcggcg ccctgaagcg cggcggtatc gtcggtgatt ggcccacgct
     1561 ccagcaggcc aagctttttg aagatcgcga tctcgcgcca accttggacg ttcgccaagt
     1621 ctttaaaggt gttttgatgg atcatttggg ggttggccgg cgcgccctgg aagacaccgt
     1681 cttcccgggc agcgccgggg caaccggtat ctccaatctt gttgcgtaac cgaagcgcca
     1741 cgcgaagggg cagccatgaa gatattttct ctggtcgtgg tgtgtgttgt cggcggcacc
     1801 gtcttgctga tcggatcgtc ctatctggcg atgtacctga agctcttctt ttacagcatg
     1861 cgcgattcac cggggccgac gcttgccata gccggcgggg ccggggcgtt gttgctgctg
     1921 ggaaacagcc gaacgcttcg ggaaaagctt gcgttcccgc gctttcgggc cggccgataa
     1981 ggcgcgcgcg gaatgcccgt ctacaacccg ggagatgatc tagagaacca tcgcaaattg
     2041 cccggcgatc cagtcagcct ggtcctgcgt taggatcagc ggtggcgcga ttcggattgt
     2101 atgttcgtgg gtttctttgg cgagaaggcc gcgggccagc aatttttcgc agatgggccg
     2161 cgcaccgccg gcatcagggt gcagctcgat ggcgatcatc agtcctgcgc cgcggacatc
     2221 cttcatcaag ggcgagcgga tggtctccaa ccgactcttt aggtaaccgc cgatgcgcgc
     2281 ggcattctcg atcatgcctt cttcgacgag aaccttgagg gccatgcgcg ccacggcgca
     2341 ggcaagcggg ttgccgccga aggtcgagcc atgttccccg ggacgcagca cactcatcgc
     2401 ttcggagttg gagagcaccg ccgacacggg gtagaagccg ccggccagcg ccttgccgat
     2461 caccgttata tcggcttcga cgccttcatg ttcctcggca agcaatttgc cggtgcggcc
     2521 caggcccgtc tggatctcat ccaaaatgaa aagcacattg tggcgggtgc agagcgcgcg
     2581 ggcttgcttc agatagccgg gcggcgggat gataacaccc gcttccccct gaatgggctc
     2641 cgtcaggaaa gcgacggtgt tgggcccgat cgctgcttcc agcgccgcgg catcgccgaa
     2701 cggcaccatt ttgaagccgg acggaaatgg cccaaagcct tcgcgtgagg ctgggtcgct
     2761 ggagaaaccg acgatggcga tggtgcggcc atggaagttg ttttcgcaga cgatgatttc
     2821 agccctgtct ttcggcacgc ccttgaccgc atagccccat ttgcgcgcca gtttcagggc
     2881 ggtctcc
//
LOCUS       DATMDK010000252         2369 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1496219,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000252 DATMDK010000000
VERSION     DATMDK010000252.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2369)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2369)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2369
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1496219"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..508
                     /locus_tag="VNN98_04840"
     CDS             <1..508
                     /locus_tag="VNN98_04840"
                     /inference="COORDINATES: protein motif:HMM:NF012428.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="aminotransferase class III-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HWM61453.1"
                     /translation="GVTPDIMTCAKGMTNGAVPMGATIVSGKIYDAFMARTDSPIELL
                     HGYTYSAHPLACAAALATLDVYEDGLFDRVGKIAGLWEQGVHSLKGLPHVADLRNIGL
                     LAGIDLEPRAGAPGARGTAVNQACFEAGILVRNAADTLMVSPPFVITEEQIQTFFSTL
                     ANALQKTA"
     gene            574..1524
                     /locus_tag="VNN98_04845"
     CDS             574..1524
                     /locus_tag="VNN98_04845"
                     /inference="COORDINATES: protein motif:HMM:NF019349.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HWM61454.1"
                     /translation="MAGQRAVKKSPPFVPSRLQGNLARRILQLLKEQGAGPGHHLVEQ
                     EFCQKFGVSRTPVRGALKLLEAQGTVESRTNRGFVLVEPIKDIADEGPLRVKDEEAKK
                     LFVAIAHARNTGMLADEVPQQEFIRRFDTRLPIVVQVLRQMAELGLVERKEGNGWSFA
                     ASIHTQQAQTESYAFRRALEPAMLTQPSFQLDRAWADKTREAHLAFRRKRWRATDAVE
                     FYEVNADFHEQLARCSNNRYILNAVQRQIQLRRFLNYQWEYGVERVHESIDEHLEILA
                     ALEGGWNDKAAALMMHHLTTSATHTLPLDETQSARRNIAS"
     gene            complement(1533..2003)
                     /locus_tag="VNN98_04850"
     CDS             complement(1533..2003)
                     /locus_tag="VNN98_04850"
                     /inference="COORDINATES: protein motif:HMM:NF013224.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC family transcriptional regulator"
                     /protein_id="HWM61455.1"
                     /translation="MTKSTNLSDADKTLLRALQHDGRATNAELSAIAHMSESACLRRV
                     KALEQAGVIERYAAIVNPAAVGRPLTVFVTLSLESQAQEALADFERAAAAVPDIQECH
                     LMAGTSDYILRLAVRDVDALERLHSQVLTRLPGVARVVSSLALRSVVRRASLPL"
     gene            2118..>2369
                     /locus_tag="VNN98_04855"
     CDS             2118..>2369
                     /locus_tag="VNN98_04855"
                     /inference="COORDINATES: protein motif:HMM:NF017072.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)(+) transhydrogenase (Re/Si-specific)
                     subunit alpha"
                     /protein_id="HWM61456.1"
                     /translation="MRIGTVKEIKTLEFRVGLTPEGVRELAAQGHSVVVESGAGAGIG
                     LADSAYEEAGARVVASAAAVFENSDLIVKVKEPQPSEIAM"
BASE COUNT          485 a          750 c          727 g          407 t
ORIGIN      
        1 cggcgtgacg cccgacatca tgacctgcgc caaaggcatg acgaacggcg cggtgcccat
       61 gggcgccacc attgtcagcg gcaagatcta cgacgccttc atggcccgca ccgacagccc
      121 gatagagctg ctgcacggtt atacctattc cgcccacccc ctcgcctgtg ctgccgcgct
      181 tgcgacactg gatgtctatg aagatgggct gttcgacagg gtcggaaaga ttgccggcct
      241 gtgggaacaa ggcgtccaca gcctgaaggg gctgccgcat gtggcggatc tgcgcaatat
      301 cgggctgctg gcgggcatcg atctggagcc ccgcgccggc gcgccgggcg cgcgcggtac
      361 cgccgtcaac caggcgtgct tcgaagcggg gatactcgtg cgcaacgccg ccgatacgct
      421 gatggtttcg ccgccctttg ttattaccga agagcagata cagaccttct tttccacgct
      481 tgccaatgcc ttgcaaaaaa ccgcataagg gcagaaagac tggaaaaatc gcccaaattc
      541 cgtagtatcg agaccaaatc agagcaggtc gacatggccg gtcaacgcgc cgtcaaaaaa
      601 agccctcctt ttgttcccag tcgcctgcaa ggcaaccttg cgcgccgcat ccttcagctt
      661 ctgaaggaac agggcgccgg tcccggtcac catctggtcg aacaggagtt ctgccagaag
      721 ttcggcgttt cgcgcacgcc ggttcgcggc gccctcaagc tcctggaggc gcagggaacc
      781 gtcgaatcgc ggaccaaccg cggatttgtc ctggtcgagc cgatcaagga catcgccgat
      841 gaagggccct tgcgggtcaa ggacgaggaa gccaaaaagc tctttgtcgc catcgcccat
      901 gcgcgcaaca cgggtatgct tgccgacgag gtgccgcagc aggaatttat ccgccgcttc
      961 gatacccgct tgccgattgt cgtacaggtt ctgcgccaga tggcggaact cggcctggtc
     1021 gaacgcaagg agggcaatgg ctggtccttt gccgcctcca tccacaccca gcaggcccag
     1081 acggaaagct atgcctttcg ccgcgcgctg gagccggcaa tgctgacgca gccgagcttt
     1141 cagctcgacc gtgcctgggc ggacaagacc cgagaggcgc atctggcgtt ccgccgcaag
     1201 cgctggcgcg ccactgacgc ggtggagttc tacgaggtca atgcggattt ccatgaacag
     1261 ctggcccgct gttcaaacaa ccgctatatc ctcaatgccg tccagcgcca gattcagctc
     1321 cggcgctttc tcaactacca gtgggaatac ggcgtcgaac gcgttcacga atccatcgac
     1381 gagcatctgg aaatcctggc ggcgctggaa ggcggctgga atgacaaggc cgccgctctg
     1441 atgatgcatc acctgaccac cagcgccacc cacacgctgc ccctggatga gacgcagtcc
     1501 gcaagacgga atatcgcctc ctagcactgc tgctatagcg gcagcgacgc gcggcgcacc
     1561 accgagcgaa gcgctaggct ggacaccacg cgcgccacgc cgggcaggcg ggtgagaacc
     1621 tggctgtgca gccgctcaag cgcgtccaca tcgcgcacgg ccaggcgcag gatgtaatcg
     1681 gaggtgcccg ccatcaggtg gcactcctga atatccggca cggccgccgc cgcccgctcg
     1741 aaatccgcca acgcctcctg cgcctgggac tcaagactga gcgtgacaaa aacggtcagg
     1801 ggccgtccca ccgcggccgg attgacgatt gcggcatagc gttcgatgac gccggcctgt
     1861 tccagtgcct tgacccgccg caagcaggcc gattccgaca tgtgggcgat ggccgacaat
     1921 tccgcattgg tcgcccggcc atcgtgctga agcgcgcgaa gcaatgtttt atcggcgtcg
     1981 ctcaggttgg tggattttgt catctgcatg cctctgcgcg catttttccg ccaaagatat
     2041 agcaataggc gccaacattg gcggatagca cctcacgcat ggcagtatcc tgcgaaagaa
     2101 ttgttgggag acagggcatg cgcatcggaa ccgtcaaaga aatcaagacg ctggaatttc
     2161 gcgtcggcct cacgccggag ggcgtgcggg aactggctgc acagggccat agcgtagtgg
     2221 tggaaagcgg cgcgggcgcc ggcatcggcc tggccgacag cgcttatgag gaagccggag
     2281 cccgcgtggt tgccagcgcg gcagcggttt tcgagaacag tgacctgatc gtcaaggtga
     2341 aagagccgca gccatcggaa atcgccatg
//
LOCUS       DATMDK010000253         2710 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_806342,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000253 DATMDK010000000
VERSION     DATMDK010000253.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2710)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2710)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2710
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_806342"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..964)
                     /locus_tag="VNN98_04860"
     CDS             complement(<1..964)
                     /locus_tag="VNN98_04860"
                     /inference="COORDINATES: protein motif:HMM:NF023081.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="P22 phage major capsid protein family protein"
                     /protein_id="HWM61457.1"
                     /translation="MSNTLLTPTQVTRKALMILHQKLNFVGSINRGYDDSFAKDGAKI
                     GDTLKIRVPNQYTVRSGATLSAQDITETTVNLQVATQKGVDVNFSSNELTLSLDDFSD
                     RILDPAMAALAANIEADAMTMYKDVYQQVNNQGSALTFSKVLQGRKRLVDSLAPLNDR
                     TCNLNTQDNVDLVDALKGLFQDSTSIAKQYREGFMGRTAGFDFVENTLWPAHISGTEN
                     GSSPTFAVSGAGQTGAAVTVTNASSKTLKKGDVVTFAGCFSVHPETKVASSLLQQFVV
                     TADVATIGTSIPVSPPVITSGATQTVSASPTDVGAVTKVGTASQV"
     gene            complement(990..1808)
                     /locus_tag="VNN98_04865"
     CDS             complement(990..1808)
                     /locus_tag="VNN98_04865"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61458.1"
                     /translation="MTIENGAAMAANDTALRDQTDEAPEEAEVDYGGKTYTLPAELKD
                     ALLRQADYTRKTQEVAQGRKALDAARADHDRRVMAMRAHFSDAARVMALNDQLRPFAQ
                     VDWQALKAQDPARAQGLWQQCQQIKNLRDHAARAWTQRDQDHAGHAQRETAKRARQVH
                     AHLPQLIADWSPELDAKLTGYGTAQGLSREEMAQATLQNPAFVKLLHKAHQHDDTVRN
                     KNTQQIFDAAQAARPVTRVGGNGGTASRRTTDSSGDALSTEEWAKRERERLRKR"
     gene            complement(1896..2330)
                     /locus_tag="VNN98_04870"
     CDS             complement(1896..2330)
                     /locus_tag="VNN98_04870"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61459.1"
                     /translation="MKRLGLILALSGSAGLAGCSALLDATFFNNTGEEIAVDWEGART
                     TITASQFSQFHYIDGDRNRKVRLSSGGCAYLYEVPPELKDYRPDRKLDRGLQIQVEKD
                     FSIVLLSPSYAGDIPASGDIVLQHEGFPLRPMTKVCGAEAAR"
     gene            complement(2338..>2710)
                     /locus_tag="VNN98_04875"
     CDS             complement(2338..>2710)
                     /locus_tag="VNN98_04875"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61460.1"
                     /translation="GYLAGWPSHWLGLQKEPGITTGNNAIQFTNNPFGGVGAITIGNT
                     ETFAPDRNANNAPGTPDTRQEMGPHEEQHTYQGQQLGPFYLPSNILGGAAGLLIDGEW
                     RGKHNWNEVGPYQTPPRPWPK"
BASE COUNT          474 a          867 c          787 g          582 t
ORIGIN      
        1 agacctggct ggcggtaccc accttggtca ccgcgcccac atctgtcggc gaggctgaca
       61 ccgtctgggt cgcgccgctg gtgatgacgg gcgggctcac cggaatggat gtcccgatgg
      121 tcgccacatc cgccgtcacc acaaactgtt gcagcaggct ggacgccacc ttggtctccg
      181 gatgcacgct gaagcagccg gcaaaagtga ccacatcgcc cttcttcagc gtcttgctgg
      241 aggcgttggt caccgtcacc gcggcgccgg tctgccccgc gccgctcacc gcaaaagtcg
      301 gcgacgagcc gttttccgtg cccgatatat gcgccggcca cagcgtattc tcgacaaaat
      361 cgaagccggc agtgcggccc ataaagcctt cgcgatactg cttggcgata ctggtggaat
      421 cctggaacag gcctttcaac gcatccacca gatccacatt gtcctgggta ttcaggttgc
      481 aggtccggtc attcaacggc gccagactgt ccaccagccg cttgcggccc tgcagcacct
      541 tggagaaggt caaggccgag ccttgattgt tcacctgctg atagacgtcc ttgtacatgg
      601 tcatcgcatc ggcctcgata ttggccgcca gcgccgccat cgccggatcc aggatgcgat
      661 cggaaaaatc atccaggctc agcgtcaact cgttggacga gaaattcacg tccacaccct
      721 tttgggtcgc gacctgcagg ttcaccgtgg tctcggtgat atcctgggcg ctcagcgtcg
      781 cgccgctgcg cacggtatac tggttgggca cacggatttt cagcgtgtca ccgatcttgg
      841 cgccgtcctt ggcgaagctg tcgtcatagc cgcgattgat cgagccgacg aaattcagct
      901 tctggtgcaa aatcatcagg gccttgcggg tcacctgggt aggcgtaagc aatgtattcg
      961 acatgagggg ttccttaaaa gtggttgggt tagcgcttgc gcagccgttc gcgctcgcgc
     1021 ttggcccatt cctcggtgct tagcgcgtcg ccgctggaat cggtggtgcg gcgcgaagcc
     1081 gtcccgccat ttccgccgac gcgtgtcacc gggcgggccg cctgcgcggc atcgaatatc
     1141 tgctgggtat tcttattccg caccgtatcg tcgtgctggt gcgccttgtg cagcagcttg
     1201 acgaaagccg ggttctggag tgtcgcctgc gccatctcct cgcgggagag gccctgggcg
     1261 gtgccatacc cggtcagctt ggcatcaagc tccggcgacc agtccgcgat aagctgcgga
     1321 agatgcgcgt gcacctggcg cgcgcgcttg gcggtttccc gctgcgcatg gccggcatgg
     1381 tcctggtccc tttgggtcca ggcgcgggcc gcgtggtccc gcaaattctt gatctgctgg
     1441 cactgctgcc acaggccctg cgccctggcc gggtcttgcg ccttcagcgc ctgccaatcc
     1501 acctgcgcga acggcctcag ctggtcattc agcgccatca ctcgcgccgc atcgctgaaa
     1561 tgcgcccgca tcgccatcac ccgccggtca tgatcggccc gcgccgcatc caacgccttg
     1621 cgcccctggg caacctcctg cgtcttgcgg gtatagtcgg cctggcgcag cagcgcgtcc
     1681 ttcagctcgg ccggcaaggt ataagtcttg ccgccatagt cgacctcagc ctcttcgggc
     1741 gcctcatcgg tctgatcgcg caaagcggta tcgttcgcgg ccatagcggc cccgttctcg
     1801 atggtcatga ttttcctttt gggtttaggg acgcgcgaaa gagcatcagc cgcgcgcgtc
     1861 gctcacggct ggttgaaaga tcttagaaaa ttgaactagc gcgccgcctc ggcgccgcac
     1921 accttcgtca tgggccgcag cgggaagccc tcgtgttgaa ggactatgtc gccggaagct
     1981 ggtatatcgc cggcatagga gggggataaa agaacgatac tgaaatcctt ctccacctgg
     2041 atttggagac cccggtccag ctttcgatcg ggccgatagt ctttgagctc aggcggaacc
     2101 tcatacagat acgcacatcc gccgctggag agccgcacct tccgattccg gtctccgtca
     2161 atatagtgaa attgggaaaa ctggctcgcc gtgatggtgg ttctggcccc ttcccagtcc
     2221 accgcgatct cctcaccggt gttattgaag aacgtggcat ccaacagggc cgaacagccg
     2281 gcaagaccag ccgacccact caatgccaaa atcaatccca accgtttcat cggcgcctca
     2341 tttcggccac ggcctcggcg gagtctgata cggaccgacc tcgttccaat tgtgcttccc
     2401 gcgccattca ccgtcaatga gcaatccggc tgccccgccc agaatattgg atggcaaata
     2461 aaacggaccg agttgctggc cttggtaggt atgctgctcc tcatgcggtc ccatttcttg
     2521 ccgggtatcc ggggtgcctg gcgcattatt agcgtttctg tctggcgcga aagtttccgt
     2581 gttaccgatt gttatcgctc caacgcctcc aaacggattg ttggtgaact ggatcgcgtt
     2641 atttcctgtt gtgatgcctg gctccttttg caaacccagc caatggctgg gccaacccgc
     2701 cagatagcct
//
LOCUS       DATMDK010000254         4968 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2637873,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000254 DATMDK010000000
VERSION     DATMDK010000254.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 4968)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4968)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4968
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2637873"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..275
                     /locus_tag="VNN98_04880"
     CDS             <1..275
                     /locus_tag="VNN98_04880"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61461.1"
                     /translation="GVSYTLKADKTKDWKGLSWEKLGQNPTMQAQWTKLGYTKESAAD
                     IITQPFDYTIDIEGVLLTAAVILGYYLFLLFMSGKEYKQVIAEKFD"
     gene            330..491
                     /locus_tag="VNN98_04885"
     CDS             330..491
                     /locus_tag="VNN98_04885"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61462.1"
                     /translation="MWDMSGWVAWALSAIIFVWLIYDFFKINIKYSEVVLTSSREGVD
                     ELFPTEGDK"
     gene            492..1889
                     /locus_tag="VNN98_04890"
     CDS             492..1889
                     /locus_tag="VNN98_04890"
                     /inference="COORDINATES: protein motif:HMM:NF012544.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HWM61463.1"
                     /translation="MTDITVSPTSSQPVNLLKVLGPVHVWGLGVGIVLVGEFMGWNYG
                     VGKGGAFGALVACFISGLLYTCVAMIDSEITSTVAAAGGQYAQAKHTIGPLMAFNVGL
                     FMVLTYSMLGAADVQVAGQLVQIGAQNLGHAIPWQPFTIVCLAALALLNYRGVFATLT
                     VNFVITAIAFLTIIILFVGVQPWNPTAMLFHKDLLTGLPYGWIGVIAALHFGIWYYLG
                     IEGTCQAAEEVRSPGRALPLGTMCGMITLLIAAALTWYVCAGLLPWEYIGWDAELAPL
                     YDAAHVTGNSFLTVALFVGTLLSAIASANGCVNDAARAWFSMGRDRYLPEWFGAVHPT
                     YRTPFRAILFLMPIWAVFALYIPLAEIITFSILSGLLNYTFMPMNMWSFRKKWPVGTI
                     RRGFEHPFHPIPAIVLMCLCITTFFAVYLGYGRQLLAMMAFYIVASVWFAFYRYRYVK
                     RGAQFTMSWPKPQGY"
     gene            1912..2580
                     /locus_tag="VNN98_04895"
     CDS             1912..2580
                     /locus_tag="VNN98_04895"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61464.1"
                     /translation="MLATGLFLAALLVLPVLFVRDSARERRRRGDWFADVLPLLDSYR
                     VVQQGKGWPVLTGRYRGADVRLEPVLDDMAWRKLPSLWLKATVLAPNPARGTLGLLVR
                     ARGGEFYSPTGEMMHRLVIPKVFPSDALLCSDCAETAPLLAVESQIDAFDDPRMKELV
                     ITPSGARLVYQAAQAERAEYLVLRQAHFVQDRGDAALVKSLLDRAMAIVAAVDAPAQQ
                     QVAA"
     gene            2577..2843
                     /locus_tag="VNN98_04900"
     CDS             2577..2843
                     /locus_tag="VNN98_04900"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61465.1"
                     /translation="MTRAPLNPYLVLAIAVVLPGMGHVVTGAARRGMMLQLFMILGAF
                     VTWHLAPPGASLAGRLAGGLFVYALSLPEAYRLARLRALQPAAV"
     gene            2919..3563
                     /locus_tag="VNN98_04905"
     CDS             2919..3563
                     /locus_tag="VNN98_04905"
                     /inference="COORDINATES: protein motif:HMM:NF019498.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="XRE family transcriptional regulator"
                     /protein_id="HWM61466.1"
                     /translation="MVPSDLDTPDIDLTTGSNAPQEPERTLERAIGTQIRDLRQRFHL
                     SVGHLANAASISSGMLSKIENGQISASLSTLQALAQALNVPITNLFAAFEEKRDCSFV
                     KAGQGVAIERRGSKVGHVYQLLGHALGGEVVMEPYLITLKEEAVAYTGFRHAGTELIY
                     MLSGKVIYRHADQTYPLAPGDSLMFDSAALHGPETVVERPATYLSIIVYRASPV"
     gene            3655..4545
                     /locus_tag="VNN98_04910"
     CDS             3655..4545
                     /locus_tag="VNN98_04910"
                     /inference="COORDINATES: protein motif:HMM:NF024912.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine amidotransferase family protein"
                     /protein_id="HWM61467.1"
                     /translation="MCGIVGLFLKNKALAPQLGSFTARMLEVMSDRGPDSAGFAVYGA
                     GSAEIVKLTLRVEGESAALLAKAFTTRFGVPADLVRRSSHAVLAVPKVLEAEVRLWLA
                     AENTGIHLVGAGTRMELYKEVGLPSSVADRFGLPLMSGTHAIGHTRMATESSVTTDGA
                     HPFSTGMDQCLVHNGSLSNHNAMRRVLIREGLSFETENDSEVAAAYLTWRMREGASLS
                     QALTDGLDDLDGFYTFVVGTEGGFAVLRDPIACKPAVMAETGDYVAFGSEYRALAMLP
                     NIEKARLFEPEPAKVYVWEH"
     gene            4545..>4968
                     /locus_tag="VNN98_04915"
     CDS             4545..>4968
                     /locus_tag="VNN98_04915"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61468.1"
                     /translation="MPEIDLAKASVRELNTALHALTAQSNETLWIVRNPGGKHAIAAG
                     LDAPATVEIEGPVGYYCAGMNKHGTVVVRGNAGTGLAENMMSGTVRVTGDASQSAGAT
                     GRGGLLIIEGNASARCGISMKGIDIVVKGDIGAMSAFMA"
BASE COUNT          824 a         1568 c         1565 g         1011 t
ORIGIN      
        1 ccggcgtcag ctacacgctg aaagccgaca aaaccaagga ctggaaaggc ctgagctggg
       61 aaaagctggg ccagaacccg accatgcagg cgcagtggac aaagcttggc tacaccaagg
      121 aaagcgccgc cgacatcatc acccagcctt tcgattacac catcgacatc gaaggcgtct
      181 tgctgaccgc cgcggtgatc cttggctact acctgttcct gctcttcatg tcgggcaagg
      241 aatacaagca ggtgatcgcc gaaaaatttg actgatccgc gggtccgaaa cgccggaacg
      301 ccaacaccaa tctaactgtg gggcttgcaa tgtgggatat gtctggatgg gtggcctggg
      361 ccttgtccgc catcatcttc gtctggctga tctatgattt cttcaagatc aacatcaaat
      421 acagcgaagt ggtgctgacc tcgtcacgcg aaggcgtgga tgagctcttc ccgaccgaag
      481 gggacaagta gatgaccgat atcaccgtat ctcccacgtc ttcgcagccg gtcaacctcc
      541 tcaaggtgct gggtccggtc catgtctggg gcttgggcgt cggcatcgtg ctggtcggcg
      601 agttcatggg ttggaactat ggcgtgggca agggcggcgc cttcggcgcc ttggtggcct
      661 gcttcatctc cggccttctc tatacctgcg tggcgatgat cgattccgag atcacctcca
      721 ctgtggcggc ggcaggcggc caatacgccc aggccaagca cactatcggg ccgctgatgg
      781 ccttcaatgt cgggctgttc atggtgctga cctattccat gctgggcgcc gccgacgtgc
      841 aggtggccgg ccagctggtg cagatcggag cgcagaatct gggccatgcc attccctggc
      901 agcccttcac catcgtttgc ctggcggcct tggcgctgct gaactatcgc ggcgtcttcg
      961 ccaccctgac ggtgaacttc gtcatcaccg ccatcgcctt cctcaccatc atcatcctgt
     1021 tcgtcggtgt gcagccgtgg aatcccacag cgatgctgtt tcacaaggat ttgctgaccg
     1081 gcttgcctta cggctggatc ggggtgatcg cggcgctgca tttcggcatc tggtactatc
     1141 tcggcatcga gggcacctgc caggcggcgg aagaagtccg ttcgcccggc cgcgcactgc
     1201 cgctgggcac catgtgcggc atgatcacct tgctgatcgc ggcggcactg acctggtatg
     1261 tctgcgccgg cctgctgccc tgggaatata tcggctggga cgcggaactg gcgccgctct
     1321 atgacgccgc ccatgtcacc ggcaacagtt tcctcaccgt ggctctgttc gtcggcacct
     1381 tgctgtcggc catcgcctcg gccaatggct gcgtcaacga tgcggcgcgc gcctggtttt
     1441 caatgggccg cgaccgctat ctgccggaat ggttcggcgc cgtgcatccc acctaccgca
     1501 cgccgttccg cgccatcctg tttctgatgc cgatctgggc ggtgttcgcg ctctatattc
     1561 cgctggccga gatcatcacc ttctcgatcc tgtcgggcct gctgaactac accttcatgc
     1621 ccatgaacat gtggagcttc cgcaagaagt ggccggtggg cacgatccgg cggggcttcg
     1681 agcatccctt ccatcccatc cccgcgatcg tgctgatgtg cctgtgcatc accaccttct
     1741 tcgcggtgta tctgggctat ggccgccagt tgctggcgat gatggccttc tacatcgtcg
     1801 cttcggtgtg gtttgccttc tatcgctacc gctacgtcaa gcgcggcgcc cagttcacca
     1861 tgtcctggcc caagccccag ggttattgag ggttattgag ggttattgat cgtgctggcc
     1921 actgggctat tcctcgccgc tctgctggtg ctgcccgtgc tctttgtacg ggacagcgcc
     1981 cgcgagcggc gccggcgcgg cgactggttc gccgatgtcc tgccgctgct ggactcctat
     2041 cgcgtcgtcc agcagggcaa gggctggccg gtgctgaccg ggcgctatcg gggcgcggat
     2101 gtgcgactgg agccggtgtt ggacgacatg gcgtggcgca agctgccttc tttgtggctg
     2161 aaggcgacgg tgctggcgcc gaacccggcg cgcggcaccc tgggcctgtt ggtgcgggcg
     2221 cggggcgggg agttctattc cccgacaggc gagatgatgc atcgtctggt catccccaaa
     2281 gtgtttccgt ctgacgccct attgtgcagc gattgtgccg aaaccgcgcc gctccttgcc
     2341 gtggaaagcc agattgacgc cttcgacgat ccgcgcatga aggagctggt gatcacgccc
     2401 agcggcgcgc gcctggtcta tcaggcggcg caggctgagc gggccgagta tctggttctg
     2461 cgccaggcgc attttgttca ggacaggggc gatgccgcac tggtcaagtc attgctggat
     2521 cgcgccatgg ccatcgttgc ggcggtggac gcaccggcgc agcagcaggt cgcggcatga
     2581 cgcgcgctcc cctcaatccc tatctggtcc tggccatcgc cgtggtgctg cccggcatgg
     2641 gccatgtggt gacgggcgcg gcgcggcgcg ggatgatgct gcagctgttc atgatcctgg
     2701 gcgccttcgt gacctggcat ttggcaccgc cgggcgctag cctggcgggg cggctggccg
     2761 gcggtctgtt tgtctacgcc ctctcgttgc ccgaggccta ccgcctggca cggctgcgag
     2821 ccctgcagcc ggcagcggtc tgaccaaccg ccaaatggtc tcgaccatgg aagcggaatg
     2881 tttcaaagtc cggacggatt ttcccgagag gctggatcat ggtgccgtcc gacctggaca
     2941 cacccgacat cgacctgacg accggctcga acgcgccaca ggaacccgag cgcaccctgg
     3001 agcgcgccat cggcacccag atccgggact tgcgccagcg cttccatctg tcggtcggcc
     3061 atctggccaa tgccgcttct atttccagcg gcatgctgtc caagatcgag aacggccaga
     3121 tttccgcctc actctccacc ctgcaggccc tggcccaggc cctgaacgtg cccatcacca
     3181 acctgttcgc cgctttcgag gagaagcgcg attgttcctt cgtgaaggcg gggcagggcg
     3241 ttgccatcga acggcgcggc agcaaggtcg gccatgtcta tcagctgctg ggccatgcgc
     3301 tgggcggcga ggtggtgatg gagccctatc tcatcaccct gaaggaagag gcagtcgctt
     3361 ataccggctt tcgccatgcc ggcaccgagc tgatttacat gctgtcgggc aaggtgatct
     3421 accggcacgc cgaccagacc tatccgctgg cccccggcga ctcgctgatg ttcgattccg
     3481 ccgccctgca tggccccgaa accgtggtcg agcgccccgc tacctatctt tccatcatcg
     3541 tttatcgtgc cagccccgtc tgaaagtatt tcttcacaag aaatattgtt tcctattgat
     3601 tgacggcctc gcgtcggccc gctactggtg ggtccggaag aaagggcgct gctgatgtgc
     3661 gggattgtgg gactttttct caagaacaag gcgctggcgc cccaacttgg atcgttcacc
     3721 gcccgcatgc tggaagtcat gagcgaccgc ggcccggaca gcgccggctt tgcggtctat
     3781 ggcgcgggca gcgctgaaat cgtcaagctc accctgcggg tcgaaggcga aagcgcggcg
     3841 ctgctggcca aggccttcac cacgcgcttt ggtgttccgg ccgatctggt ccgccgcagc
     3901 agccatgccg tgctggccgt gcccaaggtg ctggaagccg aggtccgtct ttggctggcc
     3961 gcggaaaata cgggcatcca tctggtcggc gcgggtacgc gcatggagct ttacaaggag
     4021 gtcggtctgc ccagcagtgt cgccgaccgc ttcggcttgc cgctgatgag cggcacccac
     4081 gccatcggcc atacccgcat ggcgacggaa tcctccgtca ccaccgacgg cgcgcacccc
     4141 ttttccaccg gcatggacca atgcctggtg cataacggct cgctgtccaa tcacaacgcc
     4201 atgcgccggg tgctgatccg tgaaggcctg tcctttgaga ccgaaaatga ttccgaggtg
     4261 gcggcggcct atctcacctg gcggatgcgt gaaggcgcca gcctgtccca ggctttgacc
     4321 gatggcctgg acgacctgga cggcttttat accttcgtgg tggggaccga gggcggcttt
     4381 gccgtgctgc gcgatcccat cgcctgcaag cctgccgtga tggccgagac cggggattat
     4441 gtcgccttcg gatcggaata tcgtgccctg gcgatgttgc caaatatcga aaaggcccgc
     4501 ctgttcgagc ccgagcccgc caaagtctat gtgtgggagc attgatgccg gagattgatc
     4561 tcgccaaggc ctcggtgcgc gaattgaaca cggcgctgca cgccctgacc gcgcaaagca
     4621 atgaaacctt gtggatcgtg cgcaatcccg gcggcaagca tgccattgcg gccggcctgg
     4681 acgcgcccgc cactgtcgag atcgaggggc cggtgggcta ttactgcgcc ggcatgaaca
     4741 agcatggcac cgtggtcgtg cgcggcaatg ccggtaccgg cctggccgaa aacatgatgt
     4801 cgggcaccgt gcgggtgacg ggagatgcca gccaatcggc aggcgccacc gggcgcggag
     4861 ggctcttgat aatcgaggga aatgcgtcag ccaggtgcgg tatctcgatg aagggcatcg
     4921 acattgtggt gaaaggtgac atcggcgcga tgagcgcctt catggccc
//
LOCUS       DATMDK010000255         4203 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1962623,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000255 DATMDK010000000
VERSION     DATMDK010000255.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 4203)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4203)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4203
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1962623"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1758
                     /locus_tag="VNN98_04920"
     CDS             <1..1758
                     /locus_tag="VNN98_04920"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HWM61469.1"
                     /translation="SAAGNIAVTTFDGPLMAISYARGAHTDFAQMQVLEGRFEQARPE
                     DRPMIAADLADLASTFSGDLDVAAQRAAADDERKVIAQIAPLVRRWQEARARGDHAEL
                     LRLDNVIDAKFDLLTELITDHSFVGRRQTVTNITNYKYASIAMTVFALALAAGITLLL
                     RSRIVRPLRAAASVADRIAKGELQTPIPQGGQDETGALLNSMTVMQDNIREVMTREKE
                     LRRSAENRLVDALETSREGVMLVAPDGQIVMSNSTLRGFFPAIAYQLMPSTHFDKALE
                     LIQSQLAPSQAPSEDITTSGHAELELADGRWLRLTGSATSEGGSILFLSDFTAIKERE
                     ESLRRAKREAEAADASKSRFLANMSHELRTPLNAIIGFSEIISGQFFGEVGSARYLDY
                     SHDILRSGRHLLAVINDVLDLSRSEAGKMVLAAHETDMRDVLTDCIAMVREQCADAGL
                     TLAVTGMEHPLLMTGDPAKLRQIFLNLLSNAIKFTESGGTVSLSAGSTEGSVAVTVAD
                     TGIGMDPEDVEIAFQPFGQVDNRLERRYEGTGLGLPLTKALVDLHRGNIVIDSARGQG
                     TRITISFPRAVAQELLEAG"
     gene            complement(1988..2470)
                     /locus_tag="VNN98_04925"
     CDS             complement(1988..2470)
                     /locus_tag="VNN98_04925"
                     /inference="COORDINATES: protein motif:HMM:NF015648.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PH domain-containing protein"
                     /protein_id="HWM61470.1"
                     /translation="MSYIQQSLGDGETIIGRARFHVLYFTAAWLSLLIPGALLLAALA
                     QAQAQPDPYTVGAGVLFALGLIVFFRMMIRKWSTEIGVTSHRFVEKYGLLSMKTNEIA
                     LPNIEGVRVNQSILGKLFGYGTVRIEGTGVDSVTTPTIADPVGFVRAIQTAKEHAAGR
                     "
     gene            complement(2541..2999)
                     /locus_tag="VNN98_04930"
     CDS             complement(2541..2999)
                     /locus_tag="VNN98_04930"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61471.1"
                     /translation="MSATSAKAQLDGFIARYDPVIAQQTKSVLAMMRKLCPGAHELVY
                     DNYNALAIGFATGARVRDVWFSIAIYPRWVSLFFFGTLPLKDPTGRLKGAGKTTKHIV
                     LADGTATLAAPDVKALIALALKKAGHPFPGGRGIILIKSVSARQRPRRPA"
     gene            complement(3006..>4203)
                     /locus_tag="VNN98_04935"
     CDS             complement(3006..>4203)
                     /locus_tag="VNN98_04935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011941487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="FtsK/SpoIIIE domain-containing protein"
                     /protein_id="HWM61472.1"
                     /translation="QFRETVYLREMFASGDYEKARAPLTLALGKTIGGEPVMADLAKM
                     PHLLVAGTTGSGKSVGLNTMILSLLYRMSPEQCRLIMIDPKMLELSVYDGIPHLLSPV
                     VTDPRKAVVALKWAVREMEDRYRKMSKMGVRGVEAFNERVRKAKDKGEVLKRTVQTGF
                     DRETGKPVYEDENLEFEALPYIVVVVDEVADLMMVSGKEIEGAVQRLAQMARAAGIHL
                     IAATQRPSVDVITGTIKANFPTRISFQVTSKIDSRTILGEQGAEQLLGQGDMLYMAAG
                     GRIKRIHGPFVSDHEVEDVVRFLKSQGQPEYLDAVTEEPDEESDDPYALMGGGNRDSG
                     DDLYDKALAVVARDKKASTSYIQRRLQIGYNRAASLIERMEQDGVVSSPNHKGVREVL
                     LPDHER"
BASE COUNT          776 a         1329 c         1307 g          791 t
ORIGIN      
        1 tcggcggccg gcaatatcgc ggtcaccacc ttcgacggcc cgctgatggc gatctcctat
       61 gcccgcggcg cccataccga tttcgcgcag atgcaggtgc tggagggccg cttcgagcag
      121 gcgcggcccg aagaccgtcc catgatcgcc gccgacctgg ccgacctggc ttcgaccttt
      181 tcgggcgacc tggacgtcgc tgcccagcgc gccgccgccg acgacgagcg caaggtgatc
      241 gctcagatcg cgcccctggt gcgccgctgg caagaggccc gcgcccgcgg cgatcacgcc
      301 gaattgctgc gtctcgacaa tgtcatcgat gcgaagttcg acctgctgac cgaactgatc
      361 accgatcaca gctttgtcgg ccgccgtcag accgtcacca atatcaccaa ctacaaatat
      421 gccagcatcg cgatgacggt gtttgccttg gctctggcgg cgggcattac cctgttgctg
      481 cgcagccgta tcgtgcggcc gttgcgcgcg gcggccagcg tcgccgaccg aatcgccaag
      541 ggcgaactgc agaccccgat tccgcaaggc ggccaggacg aaactggcgc cttgctgaat
      601 tccatgacgg tgatgcagga caatatccgc gaggtgatga cgcgggaaaa agaactgcgc
      661 cgctcggcgg aaaatcgcct ggtcgacgcg ttggagacca gccgcgaagg cgtgatgctg
      721 gtagcgccgg acggccagat cgtcatgtcc aacagcacct tgcgcggctt ctttcccgcc
      781 atcgcctatc aattgatgcc cagcacccat ttcgacaagg cgctggaact gatccaaagc
      841 cagctggcgc ccagccaggc gcccagcgaa gacattacca cctccggcca tgccgagctg
      901 gaactggccg atggccgctg gctgcgcctg accggcagcg ccaccagcga aggcggttcg
      961 attctgttcc tgtccgattt caccgccatc aaggaacgcg aggaatcctt gcgccgcgcc
     1021 aagcgcgagg cggaagctgc cgatgcctcc aaaagccgct tcctggccaa tatgagtcac
     1081 gaattgcgca cgcccttgaa cgccattatc ggcttttcgg aaattatctc cggccagttc
     1141 ttcggcgagg tgggcagcgc gcgctatctg gattattccc acgacatcct gcgcagcggc
     1201 cgtcacctgc tggcggtgat caacgacgtg ctggacttgt ccaggagcga ggcgggcaag
     1261 atggtgctgg cggcacacga aaccgacatg cgcgacgtgc tgaccgattg catcgccatg
     1321 gtgcgcgagc aatgcgccga tgccggcctg accctggcgg tgacaggcat ggaacacccg
     1381 ctgctcatga ccggtgatcc cgccaagctg cgccagattt tcctcaacct cctgtccaat
     1441 gcgatcaagt tcaccgaaag cggcggcact gtttcgctgt ccgccgggtc caccgagggc
     1501 agcgttgcgg tgacggtggc cgataccggc atcggcatgg acccggaaga tgtcgagatc
     1561 gccttccagc ccttcggcca ggtggataac cggctggagc gccgttatga gggcaccggg
     1621 ctgggcctgc cgctgaccaa ggcgctggtg gatttgcaca ggggcaacat cgtcatcgac
     1681 agcgcccgcg gccagggcac ccgcatcacg atcagctttc cgcgcgcggt cgcccaggaa
     1741 ttgctggaag cgggttaggt cctggttccc tctccccttg agggagagga agaaaaatca
     1801 ttgggttagc ggcgcgcagc ggcgctcaac ccattgattt ttcaggtgag gggtgagtgt
     1861 gcgccgtgac ccctcaccta gcaaaatcta agcacttagc tccgcatgcg ctccgctaag
     1921 tgcaagattt tgcgtcctct ccctcaaggg gagagggaag aaagtgctgc cttggtgata
     1981 agcaacacta ccgccccgct gcatgttcct tcgccgtctg gatggcgcgg acaaagccga
     2041 caggatcggc gatggtgggc gtggtcaccg aatccacccc ggtgccttcg atcctgacgg
     2101 tgccatagcc gaacagcttg cccaggatgg actggttgac ccgcacgccc tcgatattag
     2161 gcagggcgat ctcattggtc ttcatcgaca gcagaccgta tttctcgaca aagcggtggc
     2221 tggtgacgcc gatctcggtg gaccatttgc ggatcatcat tcggaaaaag acgatcaggc
     2281 ccagcgcgaa cagcactcca gcgccgacgg tgtagggatc tggctgcgcc tgcgcctggg
     2341 cgagggccgc cagcagcagc gcgccgggga tcagcaggct gagccaggcg gcggtgaaat
     2401 agagcacatg aaaacgggcg cggccgatga tggtctcgcc gtcgcccagc gattgctgaa
     2461 tataagacat gctgttctcc ccgctatgag agggccgttt taggcgattt catcgcacgg
     2521 ggccagataa caggcgacag tcaggcgggc cggcgcggcc gctgccgggc agaaacggat
     2581 ttgatcaaga tgatgccgcg tccgcctgga aacgggtgcc cggccttttt taaggccagg
     2641 gcgatcaagg ctttgacgtc aggcgcggcc agcgtggcgg tgccgtctgc cagcacgatg
     2701 tgtttcgtcg tcttgcccgc gcctttcagg cgcccggttg ggtcttttag tggcagggta
     2761 ccaaagaaga acaggctgac ccagcgggga tagatggcga tggaaaacca cacatcgcgc
     2821 acccgggcgc ccgtggcaaa gccaatcgcc agcgcattgt aattgtcata aaccagttcg
     2881 tgggcgccgg gacagagctt gcgcatcatg gccagcacgg actttgtctg ctgcgcgatg
     2941 acgggatcgt agcgggcgat aaatccgtcc aattgtgctt tagcgctcgt cgcggacacg
     3001 ggctcttatc gttcgtgatc gggcagtaag acttcccgca cacccttatg attggggctg
     3061 gagaccacgc cgtcctgttc catgcgctca atcaggctgg cggcgcggtt atagccgatc
     3121 tgcagccgcc gctggatgta gctggtactg gccttcttgt cccgtgccac caccgccagc
     3181 gccttgtcat aaaggtcgtc gccgctatcg cggttgcccc cgcccatcag ggcataggga
     3241 tcgtcgcttt cctcatcggg ctcctcggtc acggcgtcta gatattccgg ctggccctgg
     3301 gatttgagga accgcaccac gtcttcgact tcgtgatccg acacaaaggg gccgtggatg
     3361 cgcttgatgc gcccgcccgc cgccatatag agcatgtcgc cctgacccag cagttgttcg
     3421 gcgccctgct cgcccagaat ggtgcggctg tcgattttgc tggtcacctg gaaggaaatg
     3481 cgggtgggga aattggcctt gatggtgccg gtgatcacgt ccaccgacgg gcgctgagtg
     3541 gcggcaatca gatggatgcc ggcggcgcgc gccatctggg ccaggcgctg caccgcgcct
     3601 tcgatctctt tgcccgacac catcatcagg tcggcgactt cgtccaccac caccacgata
     3661 tagggcaggg cctcgaattc cagattctcg tcttcataaa ccggcttgcc ggtttcgcga
     3721 tcgaagccgg tctgcaccgt gcgcttgagg acttcaccct tgtccttggc cttgcggacg
     3781 cgctcattga aggcttccac cccgcgcacg cccatcttgg acattttgcg gtagcggtct
     3841 tccatttcgc gcaccgccca tttgagcgcc accaccgcct tgcgcggatc ggtgaccacg
     3901 ggcgacagaa ggtggggaat gccgtcatag accgacaatt ccagcatctt gggatcgatc
     3961 atgatcaggc ggcactgctc cggcgacatg cggtacagca gcgacaggat catggtgttc
     4021 agcccgaccg acttgcccga gccggtggtg ccggccacca gcaagtgggg cattttggcc
     4081 aggtcggcca tcaccggctc gccgccgatg gtcttgccca gcgccagggt cagcggcgcg
     4141 cgggcctttt cataatcgcc gctggcgaac atctcgcgca gatagaccgt ttcacggaac
     4201 tgg
//
LOCUS       DATMDK010000256         2319 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2640994,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000256 DATMDK010000000
VERSION     DATMDK010000256.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2319)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2319)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2319
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2640994"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..229
                     /locus_tag="VNN98_04940"
     CDS             <1..229
                     /locus_tag="VNN98_04940"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61473.1"
                     /translation="IQDLAGPDGQAAEPPSSSDQVTDEVASSLDGGNAPPAGADSGPV
                     IPKMLANSPPPPPPPTDISALPSFGNASLWQ"
     gene            384..2021
                     /locus_tag="VNN98_04945"
     CDS             384..2021
                     /locus_tag="VNN98_04945"
                     /inference="COORDINATES: protein motif:HMM:NF015803.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ShlB/FhaC/HecB family hemolysin
                     secretion/activation protein"
                     /protein_id="HWM61474.1"
                     /translation="MAQPVVPALPGAVQPGRNDRPVPTPPSQPDFDFSIEAPSRSPVG
                     RAVDQVTFTLKDLKITGARTLPAESFRPLYAGLLGQQVKLSNILDVADAIEKAYRDHG
                     YILVRAYVPPQRVRDGVFTINIVEGKIAHVAVEGGTPATQDQVKAYLQPSLNRAPLPL
                     TAMERSLLLSNDLPGVTASGVLKPSEDVPGASDIVVTVDQPRATGGLGVDNRGSRFSG
                     LWTLNADAEINSILDAADQLAGVLTTSPDASEQIAGQLRYRRPIGDDGVIGTLAGTIT
                     HGQPGSTLSSFGVVTDSWAVGPRLTWPVIRTRAQSLQLDSGFTFQQADINVLSSRIAH
                     DKWRVLDVSATYLYSNWPGGSWLATAGIAQGIPGLGASANLSAELSRKGGYLDFTKFT
                     GLLRYVAFLPQGFSAVLTGQGQFSSVPLINGELVSFGGVGIGRGYDPGAITGDRGIGG
                     SGELRYDAPWANRYVLSVQPYVYVDGGQTWYIQRGAAIDPALMDQSIISVGGGVRLAL
                     PYNASLGLEGSRTLHAVTGSDAGKEATKFFVTAGIRF"
     gene            2033..>2319
                     /locus_tag="VNN98_04950"
     CDS             2033..>2319
                     /locus_tag="VNN98_04950"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61475.1"
                     /translation="MRHTSLSLLAGALLAAVAAAPAQAAPGDLGNDMAGQACRLTANA
                     ISCGTAGVVAGGLHQVALGATLPAGDAARRGAVAAAIRGLPADGSAAGLRC"
BASE COUNT          355 a          797 c          770 g          397 t
ORIGIN      
        1 aatacaggat ctcgccggcc ctgacggcca ggctgccgag ccaccttcct cgtccgatca
       61 ggtcactgac gaggtcgcgt ccagcctgga cggcggcaat gcgccgcccg cgggcgcgga
      121 tagcggaccg gtgattccga agatgctggc caacagtccg ccgcccccgc ccccgccgac
      181 cgacatcagc gccttgccgt ccttcggcaa tgcctcgctc tggcaatgat tttaaagacg
      241 catccattta acagcggact gaattggcaa tgccggcatc gatgaggggg aatggggtac
      301 aaacgggcaa agaccccgcc aggacagtgc gccgcgccgc gctgatgggc gctgcactgt
      361 tgtgcgcgac gtccgtgtct gcgatggcgc agccggtcgt cccggccctg ccgggtgcgg
      421 tgcagccggg gcgcaatgac cgccccgtgc cgacgccgcc cagccagccg gatttcgatt
      481 tcagcatcga ggcgccgtcg cgctcgccgg tgggccgcgc cgtggaccag gtgaccttca
      541 ccctgaagga cctgaagatc accggcgcca ggaccctgcc ggccgagagc ttccgcccgc
      601 tttacgccgg gctgctgggc cagcaggtca agctcagcaa catcctcgat gtggccgatg
      661 ccatcgagaa ggcttaccgc gatcacggct atattctggt gcgcgcctat gtcccgccgc
      721 agcgggtgcg cgacggcgtc ttcaccatca acattgtcga aggcaagatc gcccatgttg
      781 cggtcgaagg cggcacgcca gcgacgcagg atcaggtaaa ggcctacctt cagcccagcc
      841 tcaaccgcgc gcccttgccg ctcaccgcca tggagcgcag cctgcttttg tccaacgacc
      901 tgccgggcgt taccgcctcg ggcgtactga agccgtcgga agacgttccc ggcgcctccg
      961 atatcgtggt gacggtggac cagccgcgcg ccaccggcgg gcttggggtg gacaatcgtg
     1021 gctcgcgctt ctccggcctg tggaccttga atgcggatgc ggagatcaat tccatcctcg
     1081 atgccgccga tcagctggcc ggcgtgctga ccacctcgcc cgatgccagc gaacagatcg
     1141 caggccaact gcgctatcgc cgcccgatcg gtgatgacgg ggtgatcggt accctggcag
     1201 gcaccatcac ccatggccag ccgggctcga ccttgtcgtc cttcggcgtg gtcaccgaca
     1261 gttgggcggt gggcccgcgc ctgacctggc ccgtcatccg cacgcgcgcc cagtcgctgc
     1321 agctggacag cggcttcacc ttccagcagg ccgatatcaa tgtgctcagc agccgcatcg
     1381 cgcacgacaa atggcgggtg ctggatgtca gcgccaccta tctctattca aactggccgg
     1441 gcggctcctg gctggcgacg gcgggcatcg cccagggcat tccgggcttg ggcgcgtcgg
     1501 ccaacctgtc ggcggagctg tcgcgcaagg gcggctatct cgacttcaca aaattcaccg
     1561 gcttgctgcg ctatgtcgct ttcctgcccc agggcttttc ggcggtgctg accggacagg
     1621 gacaattctc ctccgtgccg ctgatcaatg gcgaactggt gtccttcggc ggcgtcggca
     1681 tcgggcgcgg ttatgatccc ggcgccatca ccggcgaccg cggcatcggc ggctcgggcg
     1741 aattgcgcta cgacgcgccc tgggccaacc gctatgtgct gagcgtgcag ccttatgtct
     1801 atgtcgatgg cggccagact tggtacatcc agcgcggcgc cgcgatcgat ccggcgctga
     1861 tggatcagtc cattatctcg gtcggcggcg gcgtccggct ggccttgccc tataacgcct
     1921 cgctggggct ggaaggctcg cgcactttgc atgccgtcac cggcagcgac gcgggcaagg
     1981 aggcgaccaa gtttttcgtc accgccggaa tcaggttctg aggaaaagcg ccatgcgaca
     2041 cacctcgctt tctcttctgg ccggcgccct cctggcggcg gtcgcggctg cgccggcaca
     2101 ggcggcgccg ggtgatctgg gcaacgacat ggcgggccaa gcctgccgcc tcacagccaa
     2161 tgccataagc tgcggcacgg ccggggtcgt cgccggcggc ctgcatcagg tggctctggg
     2221 cgcgacgctg ccggcgggcg atgcggcgcg gcgcggcgcg gtggccgctg ctattcgcgg
     2281 cttgcccgcg gacggctcgg cggcggggtt gcgctgcga
//
LOCUS       DATMDK010000257         3129 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1723006,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000257 DATMDK010000000
VERSION     DATMDK010000257.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3129)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3129)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3129
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1723006"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..416)
                     /locus_tag="VNN98_04955"
     CDS             complement(<1..416)
                     /locus_tag="VNN98_04955"
                     /inference="COORDINATES: protein motif:HMM:NF012472.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HWM61476.1"
                     /translation="MKYNRLGQTGLFVSEICLGTMTFSGENYFGGVIGTLDQKAATAL
                     IARSLEARVNFIDTANVYSFGESEKMTGQALKDLGVKRSDVVLATKVYGRMEPGPNDM
                     GASRGHIMDSISLSLERLQTDHIDLYQIHHSDPMTPL"
     gene            complement(425..1288)
                     /locus_tag="VNN98_04960"
     CDS             complement(425..1288)
                     /locus_tag="VNN98_04960"
                     /inference="COORDINATES: protein motif:HMM:NF014708.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pirin family protein"
                     /protein_id="HWM61477.1"
                     /translation="MIPITGKAHDLGDGFFVTRLLPQMARRSIGPFVFFDYFGPVDFA
                     PGKGIDVRPHPHIGLATVTYLFDGSQMHRDTLGSVQEIRPGDVNWMTAGRGIAHSERT
                     GDAVRAAGHRLHGIQSWIGLPQADEEAPPAFQHFGVADLPECDDKGVTLRLIAGEAFG
                     LTSPVKTFSPIFYADARFTAGGALHYGAEHEERAFFVIEGEVQTPQVHGPGALLALEP
                     GEEITLYADGPARVMLLGGAALDGPRHIWWNFVSSSKDRIERAKQEWKDGTFGLIPGD
                     DQEFIPLPEPK"
     gene            1353..2447
                     /locus_tag="VNN98_04965"
     CDS             1353..2447
                     /locus_tag="VNN98_04965"
                     /inference="COORDINATES: protein motif:HMM:NF012955.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HWM61478.1"
                     /translation="MLRKLVTSVSFAALLAIPAAAKDGALQMVAIDVEGGGGTLFVTP
                     EGKSLLIDTGNPEVSRATGNHPSSERIVAAASALGVKKIDYLLITHYHGDHIGGFEGL
                     LARIPIGTVIDHGENRETTASPNPTAAPIDMKNPPPGSTAYGYQHYMQAIGNRHHIVA
                     KPGDVFHIGSMTVTIVMADAKPLSKPLPGAGEDNPSCAGMPGMAGNGGEENARSTASV
                     ISYGKARIAAFGDLTWDREKDLFCPTDKVGKVDVYLATHHGTALSGSPAAVNALAPIV
                     AIMGNAARKGDDPERAKTIEASPRIQGLWRLHSSTVNPQIDGDHQMIANPDADQSKDE
                     FYNLRLRIQKSGEITVINERNGFNKTYQVK"
     gene            2603..>3129
                     /locus_tag="VNN98_04970"
     CDS             2603..>3129
                     /locus_tag="VNN98_04970"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61479.1"
                     /translation="MMDPAAEIALAKSAAPPSIAGKATVLVLTRHGYETAVKGSNGFV
                     CAVERGWMSQYDFPQFWNPHMRGPLCYNPPAVRSILPYTMRRTELVLAGRSKPEMIAA
                     IKDANTRHALPPLESGAMTYMMSKQGYLNDGARNWVPHLMFYFPRAQGSTWGADLPGA
                     PPMLNPQFQDSPEAL"
BASE COUNT          617 a          968 c          973 g          571 t
ORIGIN      
        1 agcggcgtca tggggtcgga gtgatggatt tggtaaagat cgatgtgatc ggtctgaagc
       61 cgctccaggc tcagacttat gctgtccatg atatggccgc gcgacgcgcc catgtcgttg
      121 gggcccggct ccatgcggcc atagaccttg gtggccagca ccacgtcgct gcgcttgacg
      181 cccaggtcct tcagcgcctg gccggtcatt ttttcggact cgccgaaaga atagacattg
      241 gcggtgtcga tgaaattgac tcgcgcctcc aggctgcgcg cgatcaaagc ggtagcggcc
      301 ttctgatcga gggtgccgat taccccgccg aagtaattct cgccggaaaa ggtcatggtg
      361 cccaggcaga tttcggacac aaaaaggccg gtctggccca ggcgattata tttcatggca
      421 aatcctattt cggttcggga agcgggatga attcctggtc gtccccggga atgaggccga
      481 aggttccgtc cttccattcc tgcttggcgc gctcgatgcg gtctttcgat gaggagacga
      541 aattccacca gatgtggcgc ggcccgtcca gcgccgcgcc gcccagcagc atcacccggg
      601 cggggccatc ggcatagagc gtgatctctt cgcccggctc cagcgccagc agggcgccgg
      661 gaccatgcac ctgcggcgtc tggacttcgc cttcgatgac gaagaaggcc cgctcctcat
      721 gctcggcgcc ataatgcaac gcgccgcccg ccgtgaaccg ggcatcggca tagaagatgg
      781 gcgagaaggt cttcaccggt gatgtcagac cgaacgcctc gccggcgatc aaccgcaggg
      841 tgacgccctt gtcgtcgcac tcgggcaggt cggccacccc gaaatgctgg aaagcgggcg
      901 gcgcttcctc atcggcctga ggcaggccga tccagctttg aatgccgtgc aggcggtggc
      961 ccgcggcgcg cacggcatcg ccggtgcgct cgctatgggc gatgccgcgt cccgccgtca
     1021 tccaattgac gtcgcccggc ctgatctcct gtaccgagcc caaagtgtcg cggtgcatct
     1081 gcgagccgtc gaacagatag gtgacggtgg ccaggccgat atggggatgc ggccgcacat
     1141 ctatgccttt gccgggggcg aaatccacgg gtccgaaata atcgaagaat acgaagggcc
     1201 cgatgctgcg ccgcgccatc tgcggcaaaa ggcgggtgac gaaaaatccg tcgcccaggt
     1261 catgggcttt tccggtgatg gggatcatgg gcgcagccta gcggcagtgg cgcaaaacct
     1321 ctagtctcct gaaaattttt caggaggggt ttatgctgcg caagctcgtg acatcggttt
     1381 catttgccgc attgctggcc ataccggcgg cggccaagga cggcgccttg cagatggtgg
     1441 ccatcgatgt cgagggcggc ggcggcacgc tgtttgtgac tccggagggc aagtcgcttt
     1501 tgatcgacac cggcaatccg gaagtcagcc gcgccaccgg taaccatccc agctccgagc
     1561 gcattgttgc cgccgccagc gcgctggggg tcaagaagat cgattatctc ttgatcaccc
     1621 actatcacgg cgatcatatc ggtggttttg agggcctctt ggcccgcatt cccatcggca
     1681 ccgtgatcga tcacggcgag aatcgggaga ccacggcttc tcccaaccca accgcggcgc
     1741 cgatcgacat gaagaacccg ccgccgggtt ccaccgctta tggctatcag cattatatgc
     1801 aggcgatcgg caatcgccat cacatcgtcg ccaagccggg cgatgtgttt catatcggct
     1861 ccatgaccgt caccatcgtg atggccgacg ccaagccgct gtccaagccc ttgcccggcg
     1921 ccggcgaaga caatcccagc tgcgccggca tgccgggcat ggcgggcaat ggcggggagg
     1981 agaatgcccg ttccaccgcc tcggtcatca gttacggcaa ggcgcggatc gcggccttcg
     2041 gcgatctcac ctgggaccgc gaaaaggact tgttctgccc caccgacaag gtcggcaagg
     2101 tggatgtcta tctcgccacc catcacggca cggcgctgtc gggcagcccg gcggcggtga
     2161 atgcgctggc gccgatcgtg gcgatcatgg gcaatgccgc gcgcaagggc gacgatccgg
     2221 agcgggcgaa gaccatagag gcgtcgccgc gcatccaagg gctgtggcgg ctgcacagct
     2281 ccaccgtcaa tccgcagatc gacggcgatc accagatgat tgccaatccc gatgccgacc
     2341 agagcaagga cgagttctac aatctgcgtc tgcgcatcca gaaaagcggc gagatcacgg
     2401 tgatcaacga gcgcaatggc ttcaacaaga cctatcaggt gaaatgatcc tcgaccctcc
     2461 ccaagccaga cgggcccaat gaattcacac gccaggaaag cgcaatgaga tgagataccc
     2521 ttccatagtc gctgcggcat tgttctgcac atccgttgcg tatgccgcag attacccagc
     2581 catggcacct caggatcaat acatgatgga tcccgctgcc gagatcgccc tggcgaaaag
     2641 tgccgcgccg ccctccatcg caggcaaggc gacggtgctg gtgctgacgc gccacggcta
     2701 cgaaaccgcg gtcaagggga gcaacggatt cgtttgcgcg gtcgagcgcg gatggatgtc
     2761 gcaatacgac ttcccgcaat tctggaatcc gcatatgcgc ggaccgctgt gctataaccc
     2821 gcctgcggtg cgctcgatcc tgccctacac gatgagacgc acggaattgg ttctggcagg
     2881 gcgttcgaag ccggagatga tcgccgcgat caaagatgcc aacacaaggc atgcgttgcc
     2941 gcctctggaa tcgggtgcga tgacctatat gatgtccaag caggggtatc tgaacgatgg
     3001 ggcgcgcaac tgggtgccgc atctcatgtt ctattttccg cgcgcgcaag gttcaacatg
     3061 gggcgccgat ctgcccggcg cgccgccgat gctgaaccca cagttccaag attcaccgga
     3121 agctttgag
//
LOCUS       DATMDK010000258         3069 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1724204,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000258 DATMDK010000000
VERSION     DATMDK010000258.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3069)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3069)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3069
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1724204"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(50..>3069)
                     /locus_tag="VNN98_04975"
     CDS             complement(50..>3069)
                     /locus_tag="VNN98_04975"
                     /inference="COORDINATES: protein motif:HMM:TIGR00915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0042908 - xenobiotic transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HWM61480.1"
                     /translation="SLPVEQYPTIAPPAVVIDAFYPGADANTLQSSVTQVIEQQLTGL
                     DNLLYFSSSSNADGSVEITATFAAGTNPDIAQVQVQNKVQAAVPLLPSAVQQLGVTVQ
                     KSVNNFILVVAVYDDTGRYNNVDISDFITSKMKDPLSRVPGVGSTNVFGAEYSMRIWL
                     DPYKLHNFSLQPSDIQSAVQTQNVQVSAGQIGAQPATNTAQLNATVTAQSRLQTPEQF
                     RNIILKTVPSGAVVRLGDVARVELGAESYSVLSEFNGHPASGVAILLAPGANALKTVD
                     AVKARAYELEASLPPGMKMNFPVDNTTFIRLSIHDVVVTLIEAIALVVMVMYLFLQNW
                     RATLIPAVAVPVVLLGTFGVLAAAGYTINTLTLFALVLVIGLLVDDAIVVVENVERIM
                     REERLAPRDATLKSMEEITGALIGIGLVLTAVFLPMAFFGGSTGVIYRQFSVTIVSAM
                     SLSIMVALILSPSLCATLLKQVPEEERPQWALFRGFNRNFDAFRAWYAHRLDILLHHT
                     RWVMIAFAGVVAVLAFLFLRLPTGFLPDEDQGFVFTLVSLPPGAVQPRTMATAEKVAK
                     YYLDKEKNNVDFVFSIAGFSYAGSGQNTGMAFIHLKDWSERKGTQNGAAAIARRAMMT
                     FFMERDAQVYSLVPPSVPGLGNSSGFDIQMEDRGTLGHDGLIQARNQLLGLAARDPLL
                     AGVRPNSLDDTPQLHIQIDQSKASALGVSLADVNSTLSAAWGSTFINDFVDRSRVKRV
                     YMQADAPYRMTPQDLNRWYVRSTNGSMAPFSSFATSTWTVGPASLTRYNGLPSIELQG
                     AGAQGVSSGTATKEMAKLFQQLPKDAGYELTGLSFEEEASGAQAPALYGLSILVIYLC
                     LAALYESWAIPLSVMLVIPLGVVGALLAATFRGLFNDIYFQVGLLTTIGLSAKNAILI
                     VEFAVDAEKKGESAYEAAMEAARLRLRPILMTSIAFIAGVTPLALAHGAGAGSQNDIG
                     TGVVGGMITATVLAIFFVPVFFQLVNTRLQHHK"
BASE COUNT          611 a          906 c         1024 g          528 t
ORIGIN      
        1 gggggaggtg gccgtagctg gccctcgggc cagcgaaggc cggagggggc tacttgtgat
       61 gctgcaggcg tgtgttgacc agctggaaga acaccggcac gaaaaatatc gccagcacgg
      121 tggcggtgat catgccgccc accacgccgg tgccgatgtc gttctggctg ccggcgccgg
      181 cgccgtgcgc cagggccagg ggcgtgacgc cggcgatgaa ggcgatggag gtcatcagaa
      241 tgggtctgag cctcagcctt gcggcttcca tggcggcctc gtaggcggat tcgccttttt
      301 tctccgcatc gaccgcgaat tccacaatca ggatggcgtt cttggccgac aggccgatgg
      361 tggtgagcag gccgacctgg aaatagatgt cgttgaataa gccgcgaaag gtcgccgcca
      421 gcagcgcgcc gaccacgccc agcggaatga ccagcatcac ggacaagggg atcgcccagc
      481 tctcatagag cgccgccagg cagagataga tgaccagaat ggacaggcca tacagcgccg
      541 gcgcctgggc accgctggct tcttcctcga agctgaggcc cgtcagttca tagccggcat
      601 ccttaggcag ctgctggaac agcttggcca tttccttggt ggcggtgccc gaggaaacgc
      661 cctgcgcgcc ggcaccctgc agttcgatgg agggaaggcc attatagcgg gtgagcgagg
      721 cgggccccac cgtccaagtg gaagtggcaa aggaggagaa gggcgccatg ctgccattgg
      781 tgcttctcac ataccagcgg ttcagatcct gcggcgtcat ccggtaaggc gcatccgcct
      841 gcatgtagac gcgcttgaca cggctcctgt cgacgaagtc gttgatgaag gtcgagcccc
      901 aggcggcgct gagggtggaa ttgacgtcgg ccagcgacac gcctagcgcg ctggccttgg
      961 attggtcgat ctggatgtgg agctgcgggg tatcgtccag gctgttgggg cgcacgccgg
     1021 ccagaagcgg atcgcgtgcc gccagtccca gaagctggtt gcgcgcctgg atcagcccgt
     1081 catggcccag agtgccgcga tcttccatct ggatatcgaa gccgctggaa ttgcccagtc
     1141 ccggcacgct gggcggcacc agggaataga cctgggcgtc acgctccatg aagaaggtca
     1201 tcatggcgcg ccgcgcgatg gcggcggcgc cgttttgagt gcccttgcgc tcactccaat
     1261 ccttcaagtg aatgaaggcc atgccggtgt tctggcccga gccggcatag gagaagccgg
     1321 caatggagaa gacgaagtcc acattgttct tttctttgtc gagataatat ttcgccacct
     1381 tctcggccgt ggccatcgtg cgcggctgaa ccgcgccggg cggcaggctg accaaggtga
     1441 aaacgaagcc ctggtcttcg tcgggcagaa agccggtggg caggcgcagg aacagaaacg
     1501 ccagcaccgc cacgacaccg gcaaaggcga tcatcaccca gcgcgtgtgg tgcagaagaa
     1561 tgtccagcct gtgggcatac caggcgcgga aggcgtcgaa attgcggttg aacccgcgga
     1621 acaaggccca ttgcgggcgt tcctcctccg ggacctgctt gagcagcgtg gcgcagagcg
     1681 acggcgacag gattagcgcc accatgatgg acagcgacat ggccgaaacg atggtgacgg
     1741 aaaactgccg gtagatcacg ccggtggagc cgccgaagaa cgccatgggt aaaaacaccg
     1801 ctgtcagcac caagccgatg ccgatcagcg caccggtgat ttcctccatg cttttgagag
     1861 tggcgtcgcg gggtgccagc cgctcctcac gcatgatgcg ctcgacattc tccaccacca
     1921 cgatggcgtc gtcgaccaac aggccgatca ccagcaccag cgcgaacagg gtcagggtgt
     1981 tgatcgtata gccggcagcc gccagtaccc cgaaggtgcc cagcagcacc accggcaccg
     2041 ccacggcggg gatcagggtg gcgcgccaat tctgcaggaa gaggtacatc accatcacca
     2101 ccagggcgat ggcctcgatc agggtcacca ccacgtcatg gatggaaagc cggatgaagg
     2161 tggtgttgtc caccgggaag ttcatcttca tgcccggcgg caaggacgct tccaactcgt
     2221 acgcgcgggc cttgacggca tccaccgtct tgagcgcatt ggcgccgggc gccagcaaga
     2281 tggcgacacc cgatgcaggg tgaccattga attcgctgag aacggaatag ctctcggccc
     2341 ccagttcgac gcgggcgacg tcgcccagcc gcaccaccgc gccgctgggc acggtcttga
     2401 gaatgatgtt gcggaactgt tcgggtgtct ggagccgcga ctgggctgtg accgtggcgt
     2461 tcaactgcgc ggtgttggtg gcaggctggg cgccgatctg gcccgccgaa acctggacgt
     2521 tctgggtctg gacggcggac tggatgtcag agggctgcag gctgaaattg tgcagcttgt
     2581 agggatccag ccagatgcgc atggaatatt ccgcgccgaa cacgttggtg gaaccaacgc
     2641 cgggcacgcg gctcaagggg tccttcatct tggaagtgat gaagtcggaa atatcgacat
     2701 tgttgtagcg gccggtgtcg tcataaaccg ccaccaccag aatgaagttg ttcaccgact
     2761 tctgtaccgt gacgcccagc tgctgcaccg cgctgggcaa tagcggcacg gccgcctgga
     2821 ctttattctg cacctgcacc tgggcgatat cgggattggt gccggccgcg aaggtggcgg
     2881 tgatttccac cgaaccgtcg gcattcgacg aggatgagaa atagagcagg ttatccaggc
     2941 cggtgagttg ctgctcgatc acctgggtga ccgaggactg cagcgtgttg gcgtcagcgc
     3001 caggataaaa agcgtcgatc accaccgcag gcggcgcgat ggtgggatat tgctccaccg
     3061 gcaacgaca
//
LOCUS       DATMDK010000259         6516 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2407929,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000259 DATMDK010000000
VERSION     DATMDK010000259.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 6516)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6516)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6516
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2407929"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1258)
                     /locus_tag="VNN98_04980"
     CDS             complement(<1..1258)
                     /locus_tag="VNN98_04980"
                     /inference="COORDINATES: protein motif:HMM:TIGR00711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_process: GO:0006855 - xenobiotic transmembrane
                     transport [Evidence IEA];
                     GO_process: GO:0009410 - response to xenobiotic stimulus
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DHA2 family efflux MFS transporter permease
                     subunit"
                     /protein_id="HWM61481.1"
                     /translation="MSAAGSELKPMQGAQLAITALALAMGTFMQVLDSTIANVSLPTI
                     AGNLGVSSDEGTWVITAFAVANGIGVPLTGWLMGRYGVVRTFAVSVLAFTAASLLCGI
                     AWSLPSLIFFRVLQGGVSGPMIPGSQALLISIFPSDKRGAALGIWSITTLVAPICGPI
                     LGGYISDNYHWGWIFLINVPVGIGVTFLAWVNLKSRETPTRKLPIDTVGLGLLVVWVG
                     ALQVMLDQGKDLDWFASTQIVILAIVTAVGFFAFLIWELTAKNPVVDLSLFKGRNFAL
                     GTLAFCLGYAVFFANNLLMPLWLQTQVGYTATWAGLVAAPTGVIAVLLTPLSAKLMNK
                     VDARIIASVAFIAFGVSFLMRARFTNEASFLDFTLPLLVQGIAMATFFLAMITILLDG
                     VPPQKIPLASGLSNFARITAGGFAASI"
     gene            complement(1255..2409)
                     /locus_tag="VNN98_04985"
     CDS             complement(1255..2409)
                     /locus_tag="VNN98_04985"
                     /inference="COORDINATES: protein motif:HMM:NF012739.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyD family efflux transporter periplasmic
                     adaptor subunit"
                     /protein_id="HWM61482.1"
                     /translation="MTDAAQTPNGQRRFWFLILGAVVLVCALAYGVYWLLYSRYFEGT
                     DDAYVGGNVVAITSKENATVLALHADNTQTVKQGQLLIEMDPAIATVNLQSAQANLAR
                     VVRNVKAQFSKSDSGAAQLNQARVALFEAQDDYQRRQKAFATQSVSGEELAHARDAVA
                     AAQAALNSAQGGLDQSNASIEGTDIAHNPDVLSAEAQLRSAAIAYGHMRLIAPLDGVI
                     AQRTVQAGQQVAAGTPLMAVVPLSNVWIDANFKEVQLARMRVGQPVSVTADIYGGGVT
                     YHGHVEGLGAGSGSAFALLPPQNATGNWIKIVQRVPVRIALDPKELADHPLRVGLSVA
                     VEADVRDQSGPLVTSRIGAGTTRADTGEDSGPVADAMIARILKENGGVAR"
     gene            complement(2402..3838)
                     /locus_tag="VNN98_04990"
     CDS             complement(2402..3838)
                     /locus_tag="VNN98_04990"
                     /inference="COORDINATES: protein motif:HMM:TIGR01845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux transporter outer membrane subunit"
                     /protein_id="HWM61483.1"
                     /translation="MTKPLAALLSALLLTACVDAPPTTPQVAQVEQANLGLIGEAAPH
                     YPREWWRAFGDPQVDRLAASVMAGNPTLAAALARMRAAQAELSVQRADDRPQVTLDGS
                     EQRTLFSKDYIIPPPFGGSYRWYGSLAANFSWNLDFWGKQAALIDKARGTATAAALDA
                     EAAHLALSGAFAQAYINLLLNYQNGDIADATVAEREEILKISQGRFDAGLENGSAVEQ
                     AKSLLSLAKADQLRYAAAREMDIHAIAALAGQGAGAYAEITRPTPNLDVALPLPAKLP
                     ADLLARRPDILAAKARVEAAMKGREAAHADFYPDINLAALVGFQAIGMSNLLTGDAFT
                     MGIGPALHLPIFDAGKLRAQYAHATADLDLSVADYNGAVLGAIKQTADAMTQVKSLAA
                     QRVQQQDAVTSAQRAFQIAEDRYRSGLATQLPMLTAEATLLQARSSLVSVAANGAQQR
                     ITLLLTVGGGFDAENYNPQIAKQDASHD"
     gene            complement(3835..4365)
                     /locus_tag="VNN98_04995"
     CDS             complement(3835..4365)
                     /locus_tag="VNN98_04995"
                     /inference="COORDINATES: protein motif:HMM:NF013231.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HWM61484.1"
                     /translation="MKPYYKPSNYSMKNSVGYLMRICTNRLLPQMEALFEDQELTFSQ
                     WTTLVALHDGRIATAGDLAHNICHDAGSLTRLIDQMVERGLVTRARSESDRRVVTLSL
                     TSRGRSLVEALAPKVMNFWNSLLSGFTHQEVDTLIGLLTRLVIVAEGKPRGGKPSRLL
                     ISDVPISMPAKSKKSS"
     gene            4539..4802
                     /locus_tag="VNN98_05000"
     CDS             4539..4802
                     /locus_tag="VNN98_05000"
                     /inference="COORDINATES: protein motif:HMM:NF013691.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GIY-YIG nuclease family protein"
                     /protein_id="HWM61485.1"
                     /translation="MPSFVYVLAARNPDGRTITYVGWTLDLERRLAEHNGKTIGAQKG
                     AKTTRGRAWALVYAEKHRTRKGAMRREFVLKNDRAFRAALRDR"
     gene            complement(4829..5821)
                     /locus_tag="VNN98_05005"
     CDS             complement(4829..5821)
                     /locus_tag="VNN98_05005"
                     /inference="COORDINATES: protein motif:HMM:NF019474.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HWM61486.1"
                     /translation="MSLHSLRLVQSEPAAPHPTAQRVIEILGNAVPPPPDATIRAVRH
                     RYNLNRRQFLAELETVESIVHILPAERGVPRLTVIRPRNFRHGDRLPAIVYLHGGGWS
                     LGSLATYEPFCRALANATGQIVIWVEYRLAPEAPYPAALDDTLAAWRWIQGNTSELGA
                     DPARISIGGDSSGGNLAAVATLILRGQTGIKPGIQPWKQLLLYPCLDMSASLASHRKL
                     ANGYLLTAPFYAWYRNNYAPPGVARDSWRLSPLFADDLSRLPPAIVLYAGFDPLRDEA
                     AAYALKLTLAGVPVEPLYFADMIHGFLTMGGAIPAAHAAITQIADAFAALRALS"
     gene            complement(5892..>6516)
                     /locus_tag="VNN98_05010"
     CDS             complement(5892..>6516)
                     /locus_tag="VNN98_05010"
                     /inference="COORDINATES: protein motif:HMM:NF020123.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="TlpA disulfide reductase family protein"
                     /protein_id="HWM61487.1"
                     /translation="GRYASVLTAYRQDVAEAKGLPAPEDFLTHTTARDPGEIFTFNFP
                     DVDGKPVSNEDPRFKNKVVLAIVTGTWCPNCHDEAQYLVQLDKKYRDKGLAIVALDFE
                     EPEQQATQQRERAFIKKYGVKYTYLQAGAPAEMWEKVPQLNHLDTWPATVFIGRDGKV
                     AAVHSGFASPASGEFHEQLKQEFTARIEKLLAQKVAANEPGAGWQAP"
BASE COUNT         1253 a         2056 c         2092 g         1115 t
ORIGIN      
        1 cgatggaggc ggcaaaaccg cccgcggtga tgcgcgcgaa attggaaagg cccgaggcca
       61 gcggaatttt ctgcggcggc acgccatcca gcaggatggt gatcatcgcc aggaagaaag
      121 tcgccatggc gatgccctgc accagcagcg gcagggtaaa gtccagaaag cttgcctcat
      181 tggtgaagcg ggcgcgcatc aggaacgaca cgccgaaggc gatgaaggcc acgctggcga
      241 tgatgcgggc atccaccttg ttcatcagct tggcgctgag cggggtcagc agcaccgcga
      301 tcaccccggt gggcgcggcc accagtcccg cccaggtggc ggtgtagccg acctgagtct
      361 gcagccatag cggcatcaac agattgttgg cgaagaacac ggcatagccc agacaaaagg
      421 ccaaggtccc cagcgcgaaa ttgcggccct tgaacagcga caggtccacc accggattct
      481 tggcggtcag ttcccagatc agaaaagcga agaaaccgac cgcggtgacg atggccagga
      541 tcacgatctg ggtggaggcg aaccagtcca ggtccttgcc ttggtccagc atcacctgca
      601 acgcgcccac ccacaccacc agcagtccca ggcccactgt atcgatcggc agcttgcggg
      661 tgggggtctc gcggcttttg agatttaccc aagccaggaa ggtcacgccg atgccgaccg
      721 ggacattgat caggaagatc cagccccaat gataattgtc ggaaatatag ccgcccagaa
      781 tggggccgca gatcggcgcc accagggtag tgatggacca gatgcccagc gccgcgccgc
      841 gcttgtccga ggggaagatg gaaatcagca gcgcctggct gccgggaatc atgggaccgg
      901 agacgccgcc ctgcagcacc cgaaaaaata tgagcgacgg caggctccag gcgatgccgc
      961 aaagcaagga cgcggcggtg aaggccagta ccgagaccgc gaaggtacgc accacgccgt
     1021 agcggcccat cagccagccg gtcagcggca cgccgatgcc gttggccacg gcgaaggcgg
     1081 tgatcaccca ggtgccctcg tccgacgaca cgcccagatt gcccgcaatg gtgggcagcg
     1141 agacattggc gatggtggaa tccagcacct gcatgaaggt gcccatcgcc agcgccaaag
     1201 cggtgatggc gagctgggcg ccctgcatgg gcttcagttc tgaaccggct gcgctcaccg
     1261 cgccactccg ccattctctt taaggatgcg cgcaatcatg gcgtcagcaa ccggaccgct
     1321 atcctcgccg gtatcggcgc gggtggtgcc ggcgccgatg cgactggtga ccagcggacc
     1381 ggactggtcg cggacatcgg cctccaccgc cacgctgagg cccacccgca agggatgatc
     1441 cgccaattcc ttgggatcga gcgcgatccg caccggcacg cgctgcacga tcttgatcca
     1501 gttgcccgtg gcattctgcg gcggtaacag ggcgaaggcg ctgccgctgc ccgcacccag
     1561 gccttcgaca tggccgtgat aagtgacgcc gccgccataa atgtcggccg tcactgagac
     1621 cggctggccc acccgcatgc gggcaagctg cacttccttg aagttggcgt cgatccagac
     1681 attggacagc ggcaccaccg ccatcagcgg cgttccagcg gcgacctgct ggccggcctg
     1741 caccgtgcgc tgggcgatca ccccatccaa gggcgcgatc aggcgcatat ggccataggc
     1801 gatggcggct gagcgcaact gcgcctcggc cgacagcaca tcggggttgt gggcgatgtc
     1861 ggtgccttcg atgctggcat tggattgatc cagcccgcct tgcgccgaat tcaacgccgc
     1921 ttgcgcggcg gccaccgcgt cgcgggcatg ggccagttcc tcgcccgaca ccgactgggt
     1981 ggcaaaggcc ttctggcggc gctgatagtc atcctgcgct tcaaacagcg ctacccgcgc
     2041 ctggttcaac tgggctgcgc cggaatcgga cttggagaat tgcgctttca cgttgcgcac
     2101 cacccgcgcc agattggcct gggccgactg cagattcacc gtggcgatgg cggggtccat
     2161 ttcgatcagc aactggccct gtttcacggt ctgagtgttg tcggcatgca gcgccagcac
     2221 cgtggcgttt tctttcgagg tgatcgccac cacgttgccg ccgacatagg cgtcgtcggt
     2281 gccttcgaag tagcggctat agagcagcca atagacgcca taggcaagcg cgcagaccag
     2341 caccaccgcg cccagaatga ggaaccagaa acggcgttgg ccgttgggag tttgtgctgc
     2401 gtcagtcatg ggatgcgtcc tgcttggcaa tctggggatt ataattttct gcatcaaagc
     2461 cgccgcccac ggtcagcagc agggtgatgc gctgctgcgc cccgttggcc gccacgctca
     2521 ccaggctgga gcgcgcctgc aacagagtgg cttccgccgt cagcatggga agctgggtgg
     2581 ccagtccgct gcggtagcgg tcttcggcaa tttggaatgc gcgctgggca ctggtgacgg
     2641 cgtcctgctg ctggacacgc tgcgccgcca ggcttttcac ttgggtcatg gcgtcggcgg
     2701 tctgcttgat ggcgcccagc accgcgccat tataatcggc caccgacaaa tcgagatcgg
     2761 cggtggcatg cgcatattgc gccctcagct tgccggcatc gaagatcggc agatgcagag
     2821 cggggccgat gcccatggtg aaggcgtcgc cggtgagaag attagacatg ccgatggcct
     2881 ggaagcccac cagcgccgcc aggttgatgt cgggatagaa gtcggcatga gcggcttcgc
     2941 gccccttcat cgccgcttcc actcgcgcct tggccgccaa tatgtcgggc cgccgcgcca
     3001 gcaggtcggc aggcagtttt gccggcagcg gcagcgccac gtccaggttg ggcgtgggcc
     3061 gggttatttc cgcataagca cccgcgcctt gccctgccag cgccgcgatg gcatggatgt
     3121 ccatctcgcg cgccgccgca tagcgcagct gatcggcctt ggcgagggag agcagcgact
     3181 tggcctgctc caccgcgctg ccattctcca ggcccgcatc gaaacggcct tggctgattt
     3241 tcaatatctc ttcgcgctcc gccaccgtgg cgtcggcgat gtcgccattc tgataattga
     3301 gcagcaggtt gatataggct tgggcgaaag cacccgacag cgccagatgc gccgcttccg
     3361 cgtccagcgc cgcggcggtc gcggtgcccc gcgccttgtc gatcagcgcc gcctgcttgc
     3421 cccagaaatc caggttccag ctgaaattcg ccgccagaga gccataccag cgatagctgc
     3481 cgccaaaagg cggcgggatg atgtagtcct tgctgaacag ggtgcgctgc tcgctgccgt
     3541 ccagggtcac ttgcggccgg tcgtcggcac gctgtaccga cagttcggcc tgggcggcac
     3601 gcatccgcgc cagcgccgca gccagggtag gattgcccgc catcaccgaa gcggccagcc
     3661 ggtccacttg cggatcgccg aaggccctcc accattcgcg cggatagtgc ggcgcagctt
     3721 cgccaataag gcccagattg gcctgctcaa cttgcgccac ctgcggcgtg gtgggcgggg
     3781 catcgacgca ggcagtaagg agcagcgcgg acagaagggc ggcaagcggt tttgtcatga
     3841 cgacttcttc gatttagcgg gcatggaaat gggaacatcg gaaatcaaca gccgggaagg
     3901 tttgccgccg cgcggcttgc cctcggccac gatcaccagc cgggtcagca ggccgatcag
     3961 cgtgtccacc tcctggtggg tgaaaccgga tagcaggctg ttccagaaat tcatcacctt
     4021 gggagccagc gcctcgacca gggagcggcc gcgcgatgtc agggataacg tcacaaccct
     4081 tcggtcgctt tcgctgcggg cgcgggtaac caggccccgc tccaccatct gatcgatcag
     4141 gcgggtgagc gaaccagcat catggcagat attgtgggcc aggtccccgg cggtggcgat
     4201 gcgcccgtca tgcagggcga ccagggtggt ccattgcgag aaggtcaatt cctgatcttc
     4261 gaacagtgct tccatctgcg gcaagagacg gttggtgcag atccgcatca gatagccgac
     4321 ggaattcttc atcgaataat tgctgggctt gtaatacggc ttcatgacaa ggccccattc
     4381 cgcgcgcgga caatatttgc ctggtaataa tttgtcagaa caatacttgc tacggcaaat
     4441 atataaacct gcaaataccg gcccgcaagc cgattatgaa aacgcacaag cggaattttc
     4501 gtctggacag gcctgcgcaa atcgcaggac aaagcgccat gccctctttc gtctatgtcc
     4561 tggcggcacg aaatccggac ggccggacaa tcacttatgt cggctggacc ctggatctgg
     4621 agcggcggct ggccgagcat aacggcaaga caattggggc ccaaaaaggc gccaagacga
     4681 cgcgcggccg ggcctgggcg ctggtttatg ccgaaaagca ccgcacccgc aaaggcgcga
     4741 tgcgccggga attcgtgctg aagaacgacc gcgctttccg cgccgccttg cgggacagat
     4801 agccgcaagc gacctgccgc tcacccgttc agcttaaagc cctcagcgct gcgaatgcat
     4861 ccgcgatctg cgtgatggcc gcgtgagcgg cggggatggc cccacccatg gtcaggaagc
     4921 cgtgaatcat gtcggcgaaa tagagcggct ctaccggcac ccccgccaag gtcagcttca
     4981 acgcataggc ggccgcctca tcacgcaatg gatcgaagcc cgcatacagc acaatggcgg
     5041 gcggcagacg cgaaagatcg tcggcaaata gcggcgacaa ccgccagctg tcccgggcca
     5101 cacccggtgg ggcgtaattg ttgcgatacc atgcatagaa cggcgcggtg agcagatagc
     5161 cgtttgccaa tttgcgatgc gacgccaagg atgcggacat gtccaggcag ggatagagca
     5221 gcaactgctt ccagggctgg ataccgggct tgataccagt ctggccgcgc aagatcagtg
     5281 tcgcaaccgc ggcaagattg ccgccggaac tgtcgccgcc gatggagatg cgcgccggat
     5341 cggcgcccag ctcgctggta ttgccctgta tccagcgcca ggccgccagc gtgtcgtcca
     5401 gcgccgccgg atagggcgct tccggcgcca ggcgatattc gacccagatc acgatctgcc
     5461 cagtggcatt ggccagcgcg cggcagaagg gttcataggt cgccagcgat cccaggctcc
     5521 acccaccgcc atgcagatag acgatggccg gcaagcggtc gccgtggcgg aagttgcgcg
     5581 gacggatcac agttaagcgc ggcacgccgc gctcggccgg caggatgtga acgatgctct
     5641 caaccgtctc cagctcggcc agaaactggc ggcgattgag attgtagcga tggcgcacag
     5701 cacggatcgt cgcatccggt ggcggcggca cggcattgcc cagaatttca atgacccgct
     5761 gcgcggtggg atgcggtgcg gccggttcgc tttggaccag gcgcagggaa tggaggctca
     5821 taatttcctt cgcggggcaa atggcggccg gaggcttgct ccggccgcct gttgagacga
     5881 atggccctgc cctacggcgc ctgccatcca gcaccgggct cgttcgccgc cactttctgc
     5941 gccagcagct tctcgatgcg ggccgtgaac tcctgtttca gttgctcatg gaattcgccg
     6001 ctggccggag acgcaaagcc ggaatggaca gccgccacct tgccgtcgcg gccgatgaag
     6061 acggtcgccg gccaagtgtc gagatggttc agctgcggta ccttttccca catctcggcc
     6121 ggggcgccgg cctgcagata ggtgtacttc acgccatact tcttgatgaa ggcgcgctcg
     6181 cgctgctgcg tggcctgctg ttcgggctcc tcgaagtcca gggcgacgat ggccaggccc
     6241 ttgtcgcgat acttcttgtc gagctgcacc agatactgcg cctcatcatg gcagttcggg
     6301 caccaggtcc cggtgacgat agccaggacc accttgttct tgaagcgcgg atcttcattg
     6361 gagaccggct tgccgtccac atccgggaag ttgaaggtaa aaatctcgcc cggatcacgc
     6421 gcggtggtgt gggtcaggaa gtcctcgggc gcgggcaacc ccttggcttc agccacgtcc
     6481 tgacgatagg ccgtcaagac ggaggcatag cggcca
//
LOCUS       DATMDK010000260         7288 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2179925,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000260 DATMDK010000000
VERSION     DATMDK010000260.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 7288)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7288)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7288
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2179925"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..186)
                     /locus_tag="VNN98_05015"
     CDS             complement(<1..186)
                     /locus_tag="VNN98_05015"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61488.1"
                     /translation="MSGPKEYGVFLPVANGGWIVSRNTPPLDGGWAQNREAALIAEAE
                     GFDFVMAMGKWRGFGGDT"
     gene            complement(183..1379)
                     /locus_tag="VNN98_05020"
     CDS             complement(183..1379)
                     /locus_tag="VNN98_05020"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HWM61489.1"
                     /translation="MTSHGARAWLTLALMSALFFIITAATFTSLGLALLPMVAELHWG
                     WAKAGFGFTLLGFFCGITSAIPATLIRRFGVRACLLAGSAVMALAFFCLARTDGLLLY
                     FAGASLAGLGFTLLDSVPGTYLLSRCFARPSFAIGLYFTIGGLGGVAGPLLYSGVMDV
                     TGHWRSYWLVMGGLVALTGIVAAFVVDAKTDVGAAAGGDPEISTESWTMRAALQTPQF
                     WIIAAAYSAFLFCGITANSVSVAHLTQYGVPLAVAGGMMSVEALLNAGARLAGGILTR
                     FVSAKTLLAVSLGCLMVGLLALGAARDVPMMLVYAAGIGIGYGLTFFAASILLLDYFG
                     RGPYLELFAAVNLISTMGAVAPTLAGLTRDHTGSFTPFFLGLSVLVALVLLAVIMMRT
                     PHPRRA"
     gene            complement(1386..2081)
                     /locus_tag="VNN98_05025"
     CDS             complement(1386..2081)
                     /locus_tag="VNN98_05025"
                     /inference="COORDINATES: protein motif:HMM:NF019349.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HWM61490.1"
                     /translation="MASPREKDAGTRLDEWSPRLLKSRLYQRILVDIIIGTLAPGEQL
                     DENILARRYGGGLAGIREALARLALEGLVVRRARVGTSVAPLDLMGAREAFEARRLIE
                     VHCAGLAATHASDAEIVAIRATLDDGEAAVEDDDQAALAAMDEAFHVAVAAASGNRAL
                     AKMVVTLHHQTARYWLYAMRGPSSDDGIVALNEHRGLAEAIASRNVDRARAEMLKALG
                     DFPAEMKRTLESR"
     gene            complement(2266..3180)
                     /locus_tag="VNN98_05030"
     CDS             complement(2266..3180)
                     /locus_tag="VNN98_05030"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61491.1"
                     /translation="MNLRKREFLAGLGMAGMSVTGALAQEAPHGKDLGAVPPEKKKDI
                     PHRKVTTRNLFKVPDGYPNGVAVVPEGVWVAEQKAQGYGHSGKKIQEAAWLFDWNGKK
                     LKTVMTDSSNTSGLAFGGGHVWMGANGGAEGIYEVDMDGRTVSHRQIPLGPADNGGGC
                     HGLMWHGGKLWIVANRIKAILRVDPKSWTPEFIIPITTQRWHGIAWDDSHPGGAVWMV
                     TGSSDINRYVMQNGKLHHTTICGLMKYSATTGELLETAEFEDGTADAHGLDMHNGKLI
                     SCDAGVGPPGFEGTGSPSAGYIFEINFK"
     gene            complement(3250..5181)
                     /locus_tag="VNN98_05035"
     CDS             complement(3250..5181)
                     /locus_tag="VNN98_05035"
                     /inference="COORDINATES: protein motif:HMM:NF024753.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-binding-like beta-propeller repeat protein"
                     /protein_id="HWM61492.1"
                     /translation="MSKIKTLTIGALGFAAAAAAVTLLPMNHATAQGPNNDPPQVWDA
                     FGGNQQAQKYSTATQITPDNVKGLKKAWDIHTGDVSSGAHATTWGATPLFANNTVYTG
                     TPRYNIFALEPDTGKMKWKYAANGSKGDENQGLKNRGVAYWAASNPAAGQPCQKMVYV
                     GNMIGQLHGVDADTGKPCAGFGKGGVVDVNAWLTTNAKWKIGLIQPPAVYKDTLILGW
                     AGNDWVYKTENPGTVYGIDARTGALKWTFNIIPSDVLNQTGTANVWAGISVDPETGLA
                     FLPVSSPSPNYYGGDRLKEMPYVTSTTAVNAETGEVKWSRQEIHHDIWDLDINSAPTL
                     VDLNKNGQKIPALVQATKMGFLFVLNRNTGEPIYPIEERPYPASDVKGEVAAKTQPYV
                     PLPEPTVADTTPPVSTLADITSFGECSRWKARIRDEGRYTPPSLRGSVSYPATVGGVE
                     WGGGAVDPTTGTYVVNSDSVVQVYTLVPRAEADKKYGNALRAKDGYAAQQGSAYGFKL
                     ENFLNMWGMPCWTPPYGNLLSYDLNTGKLNWKKPFGQVQKWGFYMPESWGSVTIGAPV
                     ITKSGLVFIGASMDSRVRAIDLKSGNVLWKAIVDAPAVAQPAVYTYKGKQYVVFAAGG
                     NGILTPRLSDQLVAFALPN"
     gene            complement(5168..5506)
                     /locus_tag="VNN98_05040"
     CDS             complement(5168..5506)
                     /locus_tag="VNN98_05040"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61493.1"
                     /translation="MASLIAGAICVYDYYTPETGLIGTGGVELVAGAAALMLLASLVL
                     AMVPSRSGLLQGFLVVSILLDIIGSSVAGYFLESPIIMAAEALALIGWLMNVIGDAAD
                     RSVEIDDVED"
     gene            complement(5671..6531)
                     /locus_tag="VNN98_05045"
     CDS             complement(5671..6531)
                     /locus_tag="VNN98_05045"
                     /inference="COORDINATES: protein motif:HMM:NF016777.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HWM61494.1"
                     /translation="MPAIDVHVHLFDPRRPQGVPYSGPKGQPPQLALPQTYRQQIPGT
                     GIVGAIVVEASPWIEDNLWILEQAASDPMFVGVVGSLDPSKPEFREYLNRFSKDPLWR
                     GIRYARVWQVDGGKQVLKPGMGEGLKLLAQAGQTLDMANPSFDLLRGALLAMDAAPDL
                     HVVMDHMPSLDPTPATQQLYDSLIAELAQRPNFAIKLSQVIHKDEKGDIVTAPRARLD
                     QLMAAFGEDRVMFGGDWPNSVGTATIPKALSLMRDYFAQRPGIQAEKYFWRNSQRIYK
                     WKKRDAAQPG"
     gene            complement(6725..>7288)
                     /locus_tag="VNN98_05050"
     CDS             complement(6725..>7288)
                     /locus_tag="VNN98_05050"
                     /inference="COORDINATES: protein motif:HMM:NF013595.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61495.1"
                     /translation="GNPPGSGQQSDLFQSPTDVAWDASGNIFVADGIGNARIAKFTRD
                     GVFVKSWGSRGTADGQFKIAHGIAVDAGGNVYVADRGNNRIQVFDNDGNFKSNITSGG
                     DPAAICITPGAHQYLFSSNSNPVNDLDHGGEIIKLELNGTVVGKFGQAGKGPRDFGTV
                     TGIDCRNPNALYVAEFGNWRVTKVDLH"
BASE COUNT         1356 a         2351 c         2275 g         1306 t
ORIGIN      
        1 ggtatcaccg ccgaagccgc gccacttgcc catcgccatc acgaaatcga aaccttcggc
       61 ttccgcgatc agcgccgcct cgcggttctg cgcccagccg ccatccagcg gcggggtgtt
      121 gcggctgacg atccagccac cgttggccac cggcaggaac acgccatatt ccttggggcc
      181 gctcatgccc gtctgggatg cggtgtccgc atcatgatga ctgccagcaa aaccagggcg
      241 accagcaccg aaagccccag gaaaaagggc gtgaaactgc cggtatggtc gcgggtcagg
      301 cccgccaggg tcggcgccac cgcccccatc gtcgagatca aattgacggc ggcgaacagc
      361 tccagatagg gaccgcgccc gaaataatcc aagagcagaa tgctggcggc aaaaaaggtc
      421 aggccatagc cgatgccgat gccggcggca tagaccagca tcatcggcac atcgcgggcc
      481 gcgcccagcg ccagcaatcc caccatcagg cagcccagcg acaccgccag cagcgtcttg
      541 gcgctgacaa agcgggtgag aataccgccg gccagccgcg cgccggcatt gagcagcgcc
      601 tccacgctca tcatgccgcc ggccaccgcc agcggcacgc catactgggt cagatgcgcc
      661 accgacacgg aattggcggt gatgccgcag aacaggaagg cgctgtaggc ggcggcgatg
      721 atccagaatt gcggcgtctg cagcgccgcg cgcatggtcc agctttcggt ggaaatttcc
      781 ggatcgccgc ccgccgcggc tccgacatcg gtcttggcgt caaccacgaa ggccgcgacg
      841 ataccggtca gcgccaccag cccccccatc accagccagt agctgcgcca gtggccggta
      901 acatccataa caccggaata gagcagcggc cccgccaccc cgcccaatcc cccgatggtg
      961 aaatacagcc caatggcaaa agagggccgc gcgaaacagc gcgacagaag ataggtgccc
     1021 ggcaccgagt ccagcagggt gaagcccagc cctgctagtg acgcgcccgc gaaatagagc
     1081 aacaagccat cggtgcgggc caggcagaag aatgccagcg ccatcaccgc cgatcccgcc
     1141 agcaggcagg cgcgcacgcc gaagcggcgg atcagggtgg cgggtatcgc gctggtgatg
     1201 ccgcagaaaa agcccagcag cgtaaaaccg aaacccgcct tggcccagcc ccagtgcagc
     1261 tcggcgacca tgggcaacaa ggccaagccc agtgaggtga aggtggcggc ggtgatgatg
     1321 aagaacagcg cgctcatcag ggccaaggtc agccaggcac gcgcgccatg cgaagtcatt
     1381 gctgtttatc ggctttccaa ggtgcgtttc atttcggcgg gaaaatcgcc cagcgccttc
     1441 agcatttccg cccgggcgcg gtcgacattg cggctggcaa tggcctcggc caggccgcga
     1501 tgctcgttca gcgccacgat gccgtcatcg ctcgaaggtc cgcgcatggc atacagccag
     1561 tagcgcgccg tctggtgatg cagggtcacc accatcttgg ccaaggcgcg gttgccgctg
     1621 gccgccgcca ccgcgacatg gaaggcttcg tccatcgccg ccagcgcggc ttggtcatcg
     1681 tcttctaccg ccgcttcgcc gtcgtccagg gtggcgcgga tggcgacgat ttccgcatcg
     1741 ctggcatggg tggcagccag gccggcgcaa tgaacctcga tcaggcggcg cgcctcaaag
     1801 gcctcgcgcg cgcccatcag gtccagcggc gccaccgagg tgccgacccg ggcgcggcgc
     1861 accaccaggc cttccagcgc caagcgggcc agcgcctcgc ggataccggc cagcccgccg
     1921 ccatagcgcc gggcaagaat attctcgtcc agctgctcgc cgggggccag ggtgccgata
     1981 atgatgtcca ccaggatgcg ctggtacagg cgcgacttca aaagccgcgg tgaccattcg
     2041 tccagccttg ttccagcgtc tttctcacgg ggactcgcca tggacccacc cttccaccag
     2101 ggagaatggg gatggggacc ggcgttggca agggtacctc ccccaagcgc gcgcgaagcg
     2161 cgcttgcatt gggggaggtg gccgtagctg agccctgggg cgcgaagcgc cccctttaac
     2221 aattgcgcgc tccgcgcgcg gcccagcaaa ggccggaggg ggaaactact tgaagttgat
     2281 ctcgaaaatg tagccggcac tggggcttcc ggtgccttcg aaccccggcg gccccacgcc
     2341 cgcgtcgcag gaaatcagct tgccattgtg catatccagg ccatgggcgt ccgcggtgcc
     2401 gtcctcgaat tcggccgttt ccagcaactc gccggtggtg gcggagtatt tcatcaagcc
     2461 gcagatggtg gtgtgatgca gcttgccgtt ctgcatcaca taacgattga tatcggacga
     2521 gccggtgacc atccagaccg cgccgccggg atgggaatcg tcccaggcga tgccgtgcca
     2581 gcgctgggtg gtgatgggaa tgatgaactc cggtgtccag cttttggggt ccacccgcag
     2641 gatggccttg atgcggttgg cgacgatcca caatttgccg ccatgccaca tcaagccatg
     2701 gcaaccgccg ccattgtcgg cgggccccag cgggatctgg cgatgcgaca ccgtgcgccc
     2761 gtccatatcc acttcataga tgccttccgc cccgccattg gcgcccatcc agacatggcc
     2821 gcccccaaag gcgagacccg acgtgttgct ggagtcggtc atcacggttt tcagcttctt
     2881 gccgttccag tcgaacagcc aggcggcttc ctggatcttc ttgccgctgt ggccatagcc
     2941 ttgtgctttc tgctcggcga cccacacgcc ttcgggcacc accgcgacac cattgggata
     3001 accgtccggc accttgaaca ggttgcgcgt cgtcactttg cggtggggaa tatccttttt
     3061 cttttcgggc ggcacggcgc cgaggtcctt gccgtgtggc gcctcctgcg ccagcgcgcc
     3121 ggtcacgctc atgccggcca tgcccaagcc ggcgagaaat tcgcgtttgc gtagattcat
     3181 ttgcatctct caaaaacaaa gggcgcccac caatggtgag cacccttttt attgtcgatc
     3241 aatccaccat cagttcggca gcgcgaaggc caccagctgg tcggacaggc gcggcgtcag
     3301 gatgccgttg ccgccggcgg cgaacaccac atactgcttg cccttatagg tatagacggc
     3361 aggctgggcc acggcgggcg catccacgat ggccttccac aacacattgc cgctcttgag
     3421 gtcgatggcg cgcacccggc tgtccatcga ggcgccgatg aagaccaggc ccgacttggt
     3481 gattaccggc gcgccgatgg tcaccgaacc ccagctttcg ggcatataga agccccattt
     3541 ctggacctgg ccgaacggct tcttccagtt gagcttgccg gtattgagat cataggacag
     3601 caggttgcca tagggcggcg tccagcaggg catgccccac atgttgagga agttctccag
     3661 cttgaagcca taagccgaac cctgttgcgc cgcataacca tccttggcgc gcagcgcgtt
     3721 gccatacttc ttgtcggcct cggcgcgagg gaccagcgtg taaacctgaa ccacgctgtc
     3781 gctgttcacc acataggtgc ccgtggtggg atcgaccgcg ccgccgcccc attccacgcc
     3841 gcccactgtc gcgggatagg agaccgagcc gcgcaacgac ggcggcgtat agcggccctc
     3901 gtcacggatg cgcgccttcc agcggctgca ttcgccgaaa ctggtgatgt cggccaaggt
     3961 ggaaaccggc ggcgtggtgt cggccacggt cggctcggga agcggcacat aaggctgggt
     4021 cttggccgca acttcgccct tcacgtcgga cgccggatag ggccgttcct cgatgggata
     4081 gatcggctcg ccggtattgc ggttcaggac gaacaggaag cccatcttgg tggcctgcac
     4141 caaagccggg attttctggc cgttcttgtt gaggtccacc agggtcggtg ccgagttgat
     4201 gtccagatcc cagatatcat gatggatttc ctggcggctc catttcactt cgcccgtctc
     4261 ggcgttcaca gccgtggtcg aggtgacata gggcatctct ttcagccggt cgccgccata
     4321 atagttgggg ctgggcgagg acaccggcag gaaagccagg cctgtttcag gatcgaccga
     4381 aatgccggcc cagacattgg cggtgccggt ctggttcagc acgtcggacg gaatgatatt
     4441 gaacgtccat ttcagcgcgc cggtgcgggc gtcgatgcca tagacggtgc cgggattttc
     4501 ggtcttgtag acccagtcat tgcccgccca gcccaggatc agcgtgtcct tgtagacggc
     4561 cggcggctgg atgaggccga ttttccattt ggcgttggtc gtgagccagg cattgacgtc
     4621 aaccacgccg cccttgccga agcctgcgca gggcttgccg gtatcggcgt ccacgccatg
     4681 cagctggccg atcatgttgc cgacatagac catcttctgg cagggctggc ccgcggccgg
     4741 attggatgcg gcccaatagg cgacgccgcg attcttcagg ccctgatttt cgtcgccctt
     4801 ggaaccgttg gccgcatatt tccacttcat cttgccggtg tcgggctcca gcgcaaagat
     4861 gttgtatctg ggcgtaccgg tatagaccgt gttgttggcg aacagcggcg tcgcacccca
     4921 ggtggtggcg tgggcgccac tgctcacatc gccggtgtgg atgtcccagg cctttttcag
     4981 gcctttcaca ttgtcgggcg tgatctgggt ggcggtggaa tatttctgcg cctgctggtt
     5041 gccgccgaag gcatcccaga cctgcggggg atcgttgttc ggcccctgcg cggtggcatg
     5101 gttcatcggc agcaaagtga cggcggcggc cgcggcggca aagcccagtg cgccaatggt
     5161 gagggtctta atcttcgaca tcgtcaatct ccacgctgcg gtcggcggcg tcgccgatca
     5221 cgttcatcaa ccagccgatc agcgccaagg cctcggcagc catgataatg ggactctcca
     5281 ggaaataacc ggcgacggac gagccgatga tgtcgagcag gatggacacc accagaaagc
     5341 cctgcagcag gccggagcgg ctgggcacca tcgccagcac cagcgaggcc agcagcatca
     5401 gcgccgcggc gcccgccacc agttccacgc caccggtgcc gatcaggccg gtctcgggcg
     5461 tgtaatagtc gtagacgcag atggcacccg cgatcagcga tgccaatatg atcagccacg
     5521 cgccacgcgt ggaatgtctt tgagtcaacg tcccctccca atgagatctg gccaatgaaa
     5581 tctggcaatg aattcggccg ttatttcacg cgatcctagc gggcttttgc tcagacgcaa
     5641 aaccggttca cttcgcaaca gcagcaaaaa tcaaccgggt tgggcggcgt cgcgcttctt
     5701 ccacttgtag atgcgctggc tgttgcgcca gaaatacttc tccgcctgta taccagggcg
     5761 ctgcgcaaaa taatcccgca tcagcgacag ggctttgggt atggtggcgg tgcccacgct
     5821 gttgggccag tcgccgccga acatcacccg gtcctcgccg aacgccgcca tcagctggtc
     5881 cagccgcgcc cgcggcgcgg tgacgatgtc gcccttttca tctttgtgaa tgacttgcga
     5941 cagcttgatc gcgaagttgg gacgctgcgc cagttccgcg atcagggaat cgtaaagctg
     6001 ttgcgtcgcc ggtgtgggat cgagcgaggg catatgatcc atcaccacat gcagatcggg
     6061 ggccgcgtcc atcgccagca gcgcaccgcg aagcagatcg aaggacggat tggccatgtc
     6121 cagcgtctgt cccgcctggg ccagcagctt gaggccttca cccatgccgg gcttcagcac
     6181 ttgcttgccg ccgtctacct gccacacccg ggcataacgg atgccgcgcc atagcgggtc
     6241 cttggaaaag cgattcagat attcgcggaa ttccggcttg gagggatcca ggctgcctac
     6301 cacgccgaca aacatgggat cggacgcggc ctgttccaga atccagagat tgtcttcgat
     6361 ccagggactg gcttccacca cgatggcgcc gacgataccg gtaccgggaa tctgctgacg
     6421 ataggtttgc ggcagcgcca gttgcggtgg ctgccccttc ggcccggaat aaggtacgcc
     6481 ctgggggcgg cgcgggtcga acaggtgaac gtgaacatcg atagccggca tggccccgga
     6541 cgcaaaagcg ggcgacgcgg cggcggacaa gaataagaga agttcctgcg cccaccagaa
     6601 aacgccgccg cttcatcttt attcccccat ctgtccgcca cgcgggcaag cccgctagcg
     6661 gacatcttcc cccgccgagt gcttcgcact gcgggggaag aaagccggtg gcagcttcaa
     6721 cgccctaatg cagatcgact ttcgtcaccc gccagttgcc gaattccgcg acatagagcg
     6781 cattgggatt gcggcagtct atgccggtga cggtgccgaa atcgcgcggc cccttgccgg
     6841 cctggccgaa cttgcccacc acggtgccgt tcagttccag cttgatgatt tccccgccgt
     6901 gatcgagatc gttgacgggg ttggaattgg agctgaagag atactgatgc gcgcccggcg
     6961 tgatgcagat ggctgccgga tcgccgccgc tggtgatgtt gctcttgaag ttgccgtcat
     7021 tgtcgaacac ctggatgcgg ttgttgccgc ggtccgcgac atagacattg ccgccagcat
     7081 ccaccgcgat gccgtgcgcg atcttgaact ggccatcggc ggtgccgcga gagccccagc
     7141 ttttcacaaa gacgccgtcg cgggtgaact tggcgatacg tgcattgccg atgccatcgg
     7201 cgacgaagat gttgccgctc gcgtcccagg ccacgtcggt cggcgactgg aacaggtcgc
     7261 tttgctggcc tgagccgggc ggattgcc
//
LOCUS       DATMDK010000261         2181 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1036132,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000261 DATMDK010000000
VERSION     DATMDK010000261.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2181)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2181)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2181
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1036132"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..207)
                     /locus_tag="VNN98_05055"
     CDS             complement(<1..207)
                     /locus_tag="VNN98_05055"
                     /EC_number="3.6.1.7"
                     /inference="COORDINATES: protein motif:HMM:NF012911.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acylphosphatase"
                     /protein_id="HWM61496.1"
                     /translation="MSDDITSLRVHVHGFVQGIGFRDFLVMAAEAQKLDGWVRNRSDG
                     SVEALVSGPTKAVEIFVTNATKGPQ"
     gene            260..>2181
                     /locus_tag="VNN98_05060"
     CDS             260..>2181
                     /locus_tag="VNN98_05060"
                     /inference="COORDINATES: protein motif:HMM:NF024215.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FUSC family membrane protein"
                     /protein_id="HWM61497.1"
                     /translation="MASFPRSVSLAVFRAHIENGLSVAIGVGLTGVTIGWALGFPAAI
                     AAASGAVCTSISDRTDPLRQKAWIMGFAFLATVFFTGLSAFSRFSAPAFIIATAFVGL
                     WAGLISAYGRWVLSLAMTGVLAFVFAMGQKFAGPSDAADHLMLTVCGAMGYTVYAVVV
                     AWLFDDRGRRLLLAEAMHAFAAYLRAKAALYNPDTEGPGAFRALIDAHAALADRLQAA
                     RDSLFARRSHRLQRKRIDTLIALLDAFETVLSSDADLEALRGAPQRELLWRLNGFVTQ
                     MADEVERLTLALRSRHGHTNPLRHAPEARQLQDALAEARAATPDDPVIHAFTATANKL
                     MLADSHVAALAAALDDATPPSSLAAGLDLDLFRQDGPRGIGVLLNQFRWRAPALRYAI
                     RLSLAMTAGLTLTLVFPHFAHANWILLTIALIMRANYSVTRQRRWDRVTGTLIGCALA
                     VTFINTLPAPVLLLFIVLAVGTSHAYGLVAYRITAVGASISSLLLLHFVDPLVHPQFF
                     ERIVDTLIGSGLSWAFSYLLPNWERDDLPHTVRGLLAADAAFAEAALRRAPVSQRYRL
                     ARKKALDAVAQLSGAIRRLADEPNTNRRALASLGELLGANYLLASDLSSMPVLVKLRA
                     EDLDAPAADASIAAAR"
BASE COUNT          304 a          777 c          666 g          434 t
ORIGIN      
        1 ttgcggcccc ttggtggcgt ttgtgacgaa aatctccacc gccttggtgg ggccgctgac
       61 cagcgcttcc accgaaccgt ccgagcggtt gcgcacccag ccatccagct tttgcgcttc
      121 cgccgccatc accagaaagt cgcgaaagcc gatgccctgg acaaagccat gcacatgcac
      181 ccgcagagat gtaatatcgt cgctcacgcc ggtctcccgc tctttaccct aacatagtca
      241 ccccttctct ccaggcaaga tggcctcctt tccccgctcc gtttccttgg ctgtgttccg
      301 cgcccatatc gagaacggcc tgtcggtcgc catcggcgtc ggcctgaccg gcgtcaccat
      361 cggctgggcg ctgggctttc ccgccgccat cgcagccgcc agcggcgcgg tctgcacctc
      421 catcagcgac cgcactgatc ctttgcgcca gaaagcctgg atcatgggtt ttgcctttct
      481 cgccactgtc ttcttcaccg gcttgtccgc cttttcgcgc ttttccgcac cggccttcat
      541 catcgccacc gcctttgtcg gactgtgggc cgggttgatc tcggcctatg gcagatgggt
      601 gctgagcctg gcgatgaccg gtgtgctggc tttcgtcttc gccatgggac agaaattcgc
      661 cggcccgtcc gatgccgccg accatctgat gctgacggtg tgcggcgcta tgggctatac
      721 cgtctatgcc gtggtggtgg cctggctgtt tgacgatcgc ggccgccgct tgttgctggc
      781 cgaggcgatg cacgccttcg ccgcctatct gcgcgccaag gcggcgctct acaatcccga
      841 caccgaaggt cccggcgcct tccgcgccct gatcgatgcc catgcggcgt tggccgaccg
      901 gctgcaggcg gcgcgcgaca gcctgttcgc gcggcgcagc caccgcctgc agcgcaagcg
      961 catcgacacc ttgatcgcct tgctggacgc ctttgagaca gtgctgtcca gcgatgccga
     1021 tctggaggcg ctgcgcggcg cgccgcaacg cgagctgctg tggcggctga acggctttgt
     1081 cacccagatg gcggatgaag tagagaggct gaccctggcg ctacgctccc gccacggcca
     1141 caccaacccg ctgcgccatg ccccggaggc gcggcaattg caagacgcgt tggcggaggc
     1201 ccgcgccgcc acgccggatg atcctgtcat ccacgccttc accgccaccg ccaacaagct
     1261 gatgctggcc gacagccatg tcgccgcgct ggcggcggcg ctggacgatg cgaccccgcc
     1321 cagcagcctg gcggcgggac ttgatctgga cctgttccgt caggatggac cgcgcggcat
     1381 cggcgtgctg ctgaaccagt ttcgctggcg ggcgccggcg ctgcgctatg ccatccgctt
     1441 gtccttggcg atgacggcgg ggctgacctt gaccctggtc tttccccact tcgcccacgc
     1501 caactggata ttgctcacca tcgccctgat catgcgcgcc aattacagtg tcacccggca
     1561 acgccgctgg gaccgcgtta ccggtacttt gatcggctgc gccctggccg tcaccttcat
     1621 caacaccctg cccgcgccgg tgctgttgct gttcatcgtg ctggcggtgg gcaccagcca
     1681 tgcctatggc ctggtggcct atcgcatcac cgcagtgggg gcctcgatct catccctgct
     1741 gctgctgcat ttcgtggacc cgctggtgca tccgcaattc ttcgagcgca tcgtggatac
     1801 cctgatcggc tccggcctgt cctgggcctt cagctatctg ttgcccaatt gggagcgcga
     1861 cgacctgccc cacacggtgc gcgggctatt ggcggccgat gcggccttcg cggaagccgc
     1921 gctgcggcgc gcccctgttt cccagcgtta tcggctggcg cgtaaaaaag cgctggacgc
     1981 ggtggcgcaa ctgtcgggcg ccatccgccg cctggccgat gaacccaaca ccaaccgccg
     2041 cgccctggcc tcgctgggcg aattgctggg ggccaattat ctgctggcct cggatctgtc
     2101 ctccatgccg gtgctggtga aattgcgcgc cgaggatctg gatgccccgg ccgcggatgc
     2161 gtccatcgcg gcggcgcggg a
//
LOCUS       DATMDK010000262         2673 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2181155,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000262 DATMDK010000000
VERSION     DATMDK010000262.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2673)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2673)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2673
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2181155"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..359
                     /locus_tag="VNN98_05065"
     CDS             <1..359
                     /locus_tag="VNN98_05065"
                     /inference="COORDINATES: protein motif:HMM:NF024639.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="HAD hydrolase-like protein"
                     /protein_id="HWM61498.1"
                     /translation="DLVVHRGERLLYCAGSLAQAYEALGGAVIYYGKPHLPVYESALA
                     ALSAILGHKPRRPLAVGDGLLTDIKGANAAGLEALFIADGVHGEDIEPYTDEHLAALF
                     TRFGVRAGSATRKLAW"
     gene            379..801
                     /locus_tag="VNN98_05070"
     CDS             379..801
                     /locus_tag="VNN98_05070"
                     /inference="COORDINATES: protein motif:HMM:NF024844.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MaoC family dehydratase"
                     /protein_id="HWM61499.1"
                     /translation="MTSIYLDELQPGMSAAMEHTVTERDVQLFGEATGDMNPVHFDEE
                     FARKTIFRGRVAHGALSVGFISAVIGTQLPGAGTIFVSASIVFKSPVRIGDIVVTTVT
                     IREVLGREAILDCVCKVGDRLMLESEARVLVPKRPTSR"
     gene            815..1786
                     /locus_tag="VNN98_05075"
     CDS             815..1786
                     /locus_tag="VNN98_05075"
                     /EC_number="2.7.1.26"
                     /EC_number="2.7.7.2"
                     /inference="COORDINATES: protein motif:HMM:NF004159.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003919 - FMN adenylyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional riboflavin kinase/FAD synthetase"
                     /protein_id="HWM61500.1"
                     /translation="MRIFRHYEDVPLAFRGAVVAIGNFDGVHRGHRALIAEAKVQAEA
                     HRSPLAVLSFEPHPQEYFKTLRPEDGPTEPDCFRLTPLRAKARLLADLGVDALFALNF
                     DGEMARRTPQDFVENVLVKGLGIGGVVVGHDFEFGQRRAGNLAALSYMGEMEGFTVTA
                     FDTVTASGDEKISSTLIRQLLKQARPDEAARLLGHPWAVEARVEHGDARGRTMGFPTA
                     NMHLGHCLAPAFGVYAVRVNILEGDRAVARHDGVANFGIRPMYQVNVPLMETHLFDFD
                     GDLYGKYLSVELIAYIRPEAKFPSLDALIAQIAADAAKAQGILAKTA"
     gene            1825..>2673
                     /locus_tag="VNN98_05080"
     CDS             1825..>2673
                     /locus_tag="VNN98_05080"
                     /inference="COORDINATES: protein motif:HMM:NF012361.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006418 - tRNA aminoacylation for protein
                     translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I tRNA ligase family protein"
                     /protein_id="HWM61501.1"
                     /translation="MSKNPEAPDKLAETLDYRATMFLPATDFPMKAGLPEAEPKWLAR
                     WAEMDLYGQLRKRAKGRPLFVLHDGPIYANGDIHSGTGLNHILKDFVVRSQGMLGKDA
                     PYVPGWDCHGLPIEWKVEEKFRAEGKAKDDIPRDVLRRECRSFAAHWLNIQREQIKRL
                     GQIGDFEHPYTTMAFKAEAVIAREAMKFVENGLLYRGFRPVMWSPVEKTALADAEVEY
                     HEKQSPTIYVKFPVTPKIQQQYSSLDVDFETDPVTGKVNLGNKSALAYQEKVLKLQQA
                     ADELVRL"
BASE COUNT          495 a          797 c          870 g          511 t
ORIGIN      
        1 ccgatctggt ggtgcatcgc ggcgagcggc tgctctattg cgccgggtcg ctggcccagg
       61 cctatgaagc gttgggcggc gcggtgatct attacggcaa gccgcatctg ccggtctacg
      121 aatcggcgct ggcggcgttg agcgccatcc ttgggcacaa gccccggcgc ccgctggcgg
      181 tgggtgatgg acttttgacc gacatcaagg gcgcaaacgc cgcggggctg gaggcgctgt
      241 ttatcgccga tggggttcat ggcgaggaca ttgagcctta tactgacgaa catctggcag
      301 ccctgttcac ccgtttcgga gtgcgtgcgg gcagcgcaac ccgcaaactg gcatggtaag
      361 ggcgatgagg cgagggcgat gaccagcatt tatcttgatg agctgcagcc cggcatgtcc
      421 gcggccatgg agcacaccgt caccgagcgg gacgtccagc tgttcggcga ggccaccggc
      481 gacatgaacc cggtgcactt cgacgaggaa tttgcccgca agaccatatt ccgcggacgg
      541 gtggcgcatg gcgcgctgtc cgtcggcttt atctccgcgg tgatcggcac ccaattgccg
      601 ggcgcgggca ccattttcgt ctccgccagc attgtgttca aaagcccggt gcggatcggc
      661 gacatcgtcg tcacaaccgt cacgatacgc gaagtgctgg gccgtgaggc aattctggac
      721 tgtgtctgca aggtgggcga ccggctgatg ttggagtccg aagcgcgggt gctggtgccc
      781 aagcgcccga cttcacgttg atgcgaaacg gctgatgcgg atattccggc attatgagga
      841 cgtgccactt gcctttcgcg gcgcggtggt ggcgatcggc aatttcgacg gcgtgcaccg
      901 gggccatcgc gccttgatcg ccgaggccaa ggtgcaggcc gaagcgcacc gcagcccctt
      961 ggcggtgctg agcttcgagc cgcatccgca ggaatatttc aagacgcttc gcccggaaga
     1021 tgggccgacc gagccggact gtttccgctt gacgccgctg cgcgccaagg cgcggctgct
     1081 ggcggatctg ggcgttgatg cgctgttcgc gctgaatttc gacggcgaga tggcgcgccg
     1141 taccccgcag gattttgtcg agaatgtgtt ggtgaagggc cttggcatcg gcggcgtggt
     1201 ggtgggtcac gatttcgagt tcggccagcg ccgcgccgga aacctggcgg cgctgtccta
     1261 tatgggcgaa atggaaggct tcaccgtcac cgccttcgat accgtgaccg catccggtga
     1321 tgagaagatt tcctccacct tgatccgcca actgttgaaa caggcccgcc ccgatgaggc
     1381 ggcgcgcctc ttgggccatc cctgggcggt ggaagcgcgg gtcgagcatg gcgatgcgcg
     1441 cggccgcacc atgggctttc ccaccgccaa catgcatctg ggccactgcc tggcgccggc
     1501 cttcggggtc tatgccgtgc gggtcaatat cctggaaggc gaccgcgccg tggcgcgcca
     1561 tgacggtgtc gccaatttcg gcatccgccc gatgtatcag gtcaatgtgc cgctgatgga
     1621 aacccatctg tttgatttcg acggcgatct ctacggcaag tatctgtcgg tggaactgat
     1681 cgcctatatc cggcccgagg cgaaatttcc cagcctggac gccctgatcg cccagattgc
     1741 cgccgacgcc gccaaggccc agggaatcct ggcgaaaacg gcctagtgga cggtttggac
     1801 accccctgtt agaagcgtcc gcccatgtcc aaaaatcccg aagcgcccga caaacttgcc
     1861 gaaaccctcg attatcgggc gactatgttc ctgcccgcga ccgattttcc catgaaggcg
     1921 gggctgcccg aggccgagcc caaatggctg gcgcgctggg cggaaatgga cctttacgga
     1981 cagctgcgca aacgggccaa gggccgccct ctgttcgtgc tgcatgacgg cccgatctac
     2041 gccaatggcg atattcattc gggcaccggg ctcaaccaca tcctgaaaga ctttgtggtg
     2101 cgcagccagg gcatgctggg caaggacgcg ccctacgttc cggggtggga ctgtcacggc
     2161 cttcccatcg aatggaaggt ggaagagaaa ttccgcgcgg aaggcaaggc caaggacgat
     2221 atcccccgcg atgtgctgcg ccgggaatgc cgcagcttcg ccgcccattg gctgaacatc
     2281 caacgcgagc agatcaagcg gttgggtcag atcggcgact tcgagcatcc ttacaccacc
     2341 atggccttca aggccgaggc ggtgatcgcg cgcgaggcga tgaagttcgt ggagaatggc
     2401 ttgctgtatc gcggcttccg cccggtgatg tggtcgccgg tggagaagac cgcgctggcc
     2461 gatgccgagg tcgagtatca cgagaaacag tcgcccacga tctatgtgaa gtttcccgtc
     2521 acgcccaaaa tacagcagca gtattcatcg ctcgatgtcg attttgaaac cgatccggtg
     2581 actgggaaag tgaatcttgg caacaaatcg gcccttgcct atcaagaaaa agttttaaaa
     2641 ttgcagcagg ctgcggacga acttgttcgg ctg
//
LOCUS       DATMDK010000263         8937 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_120852,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000263 DATMDK010000000
VERSION     DATMDK010000263.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 8937)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8937)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8937
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_120852"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..898
                     /gene="trpB"
                     /locus_tag="VNN98_05085"
     CDS             <1..898
                     /gene="trpB"
                     /locus_tag="VNN98_05085"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020044135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004834 - tryptophan synthase activity
                     [Evidence IEA];
                     GO_process: GO:0000162 - tryptophan biosynthetic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="tryptophan synthase subunit beta"
                     /protein_id="HWM61502.1"
                     /translation="LARRMGKTRVIAETGAGQHGVATATACTLLGLDCAVYMGEEDTR
                     RQALNVSRMRMLGAEVIPVATGTRTLKDAMNEAFRDWVTSVGHTHYCIGSVGGPHPFP
                     MMVRDFQRVIGLEAREQVLEATGRLPDAVIACVGGGSNAIGMFHPFVDDSAVEIHGVE
                     AAGDGVGTQRHAATLSEGTPGVLHGARSYLLQDSDGQILEAHSISAGLDYPGVGPEHS
                     WLKDIGRVRYYSITDKEALDAFMLLSKLEGIIPALESAHAIAHVTKIAGQMNKDQIIA
                     VCLSGRGDKDVFSVAHALGEKL"
     gene            895..1725
                     /gene="trpA"
                     /locus_tag="VNN98_05090"
     CDS             895..1725
                     /gene="trpA"
                     /locus_tag="VNN98_05090"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019977391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004834 - tryptophan synthase activity
                     [Evidence IEA];
                     GO_process: GO:0000162 - tryptophan biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit alpha"
                     /protein_id="HWM61503.1"
                     /translation="MSRLAAKFAVLKKEGRAAFVPFITAGDPDMETSFAILEKLPGAG
                     ADIIELGMPFTDPMADGPAVQASSVRALKSGASMTRVLEMVKKFRKTDKTTPIVLMGY
                     YNPIHAYGTSRFAKDVAAAGVDGLIVVDLPLEEDEVLRLPAQAQGVDLVRFVTPTTDD
                     TRLKRIVTEASGYLYYVSVAGVTGTKAVPEDEVRAAMARVRSATGLPCTVGFGIRSKE
                     QAEAIARLADGVVVGSAIVSMVADNLGSGKDKIVNEVLALTRALAGSTHAARHGKVPV
                     "
     gene            1722..2681
                     /gene="accD"
                     /locus_tag="VNN98_05095"
     CDS             1722..2681
                     /gene="accD"
                     /locus_tag="VNN98_05095"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: protein motif:HMM:TIGR00515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009317 - acetyl-CoA carboxylase complex
                     [Evidence IEA];
                     GO_function: GO:0003989 - acetyl-CoA carboxylase activity
                     [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase, carboxyltransferase
                     subunit beta"
                     /protein_id="HWM61504.1"
                     /translation="MNWITNIVRPRIKGLMGGGKDSGRGGGDTPENLWKKCPSCGEMI
                     FHRDLVANLNVCPNCGHHMRIGPAERFAYTFDAGSFTELVPPSGVPVDPLRFRGEKKY
                     SDEIKAARSKTGRPEAFTAARGSLDGMPVMIGVQPFDFLGGTLGLGVGEALVESMQAA
                     IKEKRPYILFVASGGARMQEGILALMQMPRATICVDMLREAGLPYIVVLTDPTFGGVS
                     ASYAMLGDIQIAEPGAQIGFTGARVIAQTIREKLPEGFQRAEYLLEHGMLDMVTHRKE
                     LRATLSRVLHLLMSQGKPRNKVLAMPVRNGSGRNGNGGVTAIP"
     gene            2681..4018
                     /locus_tag="VNN98_05100"
     CDS             2681..4018
                     /locus_tag="VNN98_05100"
                     /EC_number="6.3.2.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR01499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004326 - tetrahydrofolylpolyglutamate
                     synthase activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008841 - dihydrofolate synthase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006730 - one-carbon metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="folylpolyglutamate synthase/dihydrofolate
                     synthase family protein"
                     /protein_id="HWM61505.1"
                     /translation="MLSETTRSDAVLKRLLSLHPKKIDLALDRILRLLMALGNPHLKL
                     PPVIHVAGTNGKGSACAFARAMLEAQGLKVHVHTSPHLVRFHERIRIAGKLISEEALV
                     SLLEEVELVNAGREITFFEITAAAMFLAFSRHPADATVLEVGLGGTFDATNVIPHPAM
                     TVIQPVGLDHKEFLGDDLAGIAAEKAGIIKKGAPLVMGPQNEIARDVILRQADRLGVA
                     VFEFGQDFASRQEHGRMVYEDEVGLLDLPLPRLVGRHQIENAGVAIAALRHVGSFEGK
                     RLGWGQDAAVEKGLATVEWPARLQRLTKGPLVDSAPKGAEVWLDGGHNPHGAEAVSRA
                     MADMEENGERPLYMICGMLANKDALGYLRAFDGLARHVVTVAIPDEAASLGAGALYDV
                     ARRAGLDAAPAEDLSDAMLQIAAWTRLDDQDMPPRVLICGSLYLAGRVLAENS"
     gene            complement(4301..4645)
                     /gene="trxA"
                     /locus_tag="VNN98_05105"
     CDS             complement(4301..4645)
                     /gene="trxA"
                     /locus_tag="VNN98_05105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017978679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015035 - protein-disulfide reductase
                     activity [Evidence IEA];
                     GO_process: GO:0006662 - glycerol ether metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin TrxA"
                     /protein_id="HWM61506.1"
                     /translation="MPIKVSDASFQADVLDAKKPVLVDFWAEWCGPCRMIAPALDELS
                     TELGDKVIIAKLNIDENPHVPTKYGVRGIPTMMIFQDGQVAATKVGALPKSKIKEWIE
                     SSIPEQSIRGVK"
     gene            complement(4679..8080)
                     /gene="addA"
                     /locus_tag="VNN98_05110"
     CDS             complement(4679..8080)
                     /gene="addA"
                     /locus_tag="VNN98_05110"
                     /inference="COORDINATES: protein motif:HMM:TIGR02784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000724 - double-strand break repair via
                     homologous recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="double-strand break repair helicase AddA"
                     /protein_id="HWM61507.1"
                     /translation="MRDPSMIASDPEISAWVAANAGAGKTYTLANRVARLLLADAQPG
                     KILCLTFTKAAAAEMQDRLFKQLGEWSMLPDEALRMRIIGIGGDAHASLPKARRLFAG
                     ALETPGGLKVLTLHAFCQVVLSRFPIEANIPPAFEVLDDQSARELIGEARFAVLERAG
                     SGDAVLAEAVALLVTETSEATLTKILDAALGGDRRKLDRFFADVEDLAATVRSSHGLE
                     DGETVQTIGENFCADLAREIEQLRAVRAWLSGGGKSDVEAAAALGAVFDGDIAGSFAA
                     LDSFFLTAKGEPRKKLASKALGDARPDLLDYLTKLQSRYCTTAERHRAARAAELAHAA
                     LTLIEAMRRDYQAAKRLRGVLDYDDLILETRNLLHKRGAAGWVLYKLDGGIDHLLIDE
                     AQDTSPEQWEIVKKLTEEFFAGIGRDRAQVRTIFAVGDEKQSIFSFQGADPSQFDINR
                     RHFAALIAGAEQRLHEVPLITSRRSAPEILAFVDTVFAGEAARAGLTFRGDVIEHRAH
                     RQTAKGGIEFWPALVPEEEDEVDHYAPVDTVQKQSPVARLAVQVADRIAGWLRSGARL
                     PGHDHPIAPRDIMILLPRREPFGGEVIRQLKLRRIPVAGADRVRLTEQIAAMDLIALG
                     RFVLQREDDLTLAALLRSPLCGLSEEALFELAHDRRDHLWTRLVARRGDFPAAHGFLS
                     AMLERADYAPPFEFYSHALTALGAKEKLLARLGLESADAIEEFLSLTLTHERSHSPSL
                     ESFLDWVERGGTEIKRDMERGRDEVRVMTVHGAKGLEADIVILPDTTALPEPPSRKGH
                     LLYSNGHVLFPLANDDAPEIVKEAKAKAEEETLKEHRRLLYVALTRARDRLYVCGFES
                     KKGVKAGCWYQLAQAAAETLGVKVVRGDGEITTFGTLEDEKGDLAKDVAKQDALPGWI
                     AAQAPPEPALPRLIRPSDAIGSPPPTFSPLNAGASRFRRGLLVHALLARLPEIAPEKR
                     RTVALKFLQGVKNAESLVDETLAVLDDPQFAAAFGPGSQAEAGLLAELSEFGPYKLKE
                     RARINGRIDRLAVTETHVLILDFKTNRPPPTNEAEVPQVYLAQMALYRAGAAKVFPGK
                     RIVCGLVFTDGPRLLQLSDVVLDAQLADIAARLDPAHLDPQSARS"
     gene            complement(8080..>8937)
                     /locus_tag="VNN98_05115"
     CDS             complement(8080..>8937)
                     /locus_tag="VNN98_05115"
                     /inference="COORDINATES: protein motif:HMM:NF024117.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PD-(D/E)XK nuclease family protein"
                     /protein_id="HWM61508.1"
                     /translation="SPRLPRPAPTPPVESRPRRLSVTEIETWLRDPYAIYAKHVLKLR
                     PLEALDETIGPLERGTALHKALEIFIAKYKNAPPDDAERQLATIADQVFAAAGIPKAA
                     LALWRPRFAGAARGFVEFERGRQDAITASHLEIKGSLKIGDFTLSGIADRIDVLKDGK
                     CAILDYKTGAAPSKKQVEQLLSPQLPLEAAMLAEDGFGIGRRITEDLIYLSLASEKQA
                     RAPRFIEDAPALAAEAAAQLARRIAWFSERATGYRSRVRPYRADIAGDYDHLARVREW
                     SPSGWAEEE"
BASE COUNT         1551 a         2853 c         2959 g         1574 t
ORIGIN      
        1 gctggcccgg cggatgggca agacgcgggt gatcgcggag accggagccg gccagcacgg
       61 agtggccacc gcgaccgcct gcacgctgct cggcctggac tgcgccgtct acatgggcga
      121 ggaggacacc cgcaggcagg ccctgaacgt gtcccggatg cggatgctcg gcgccgaggt
      181 catcccggtc gccaccggca cccgtacgct taaggacgcc atgaacgagg cgttccgtga
      241 ctgggtaacg tcggtcgggc acacgcacta ctgcatcggc tcggtcggcg gtccgcatcc
      301 gttcccgatg atggtcaggg acttccagcg ggtcatcggc ctggaggccc gcgagcaggt
      361 gctcgaggcc accggccggc tgccggacgc cgtgatcgcc tgcgtcggcg gcggctccaa
      421 cgccatcggc atgttccatc cctttgtcga cgacagcgcg gtggagattc acggcgtcga
      481 agcggcgggc gacggggtcg gcacgcagcg ccatgccgcc actctttccg agggcacgcc
      541 cggcgtgctg catggtgcgc gctcttatct gctgcaggat tccgacggcc agatattgga
      601 agcgcattca atttcggcgg ggctggatta tcccggcgtc ggcccggagc atagctggct
      661 gaaggatatc ggccgggtgc gctattattc catcaccgac aaggaggcgc tggacgcctt
      721 catgctgctg tccaagctgg aaggcattat cccggcgctg gaatcggcgc atgccatcgc
      781 ccatgtcacc aagatcgcgg gccagatgaa caaggaccag atcatcgccg tctgcctgtc
      841 ggggcgcggc gacaaggatg tcttctccgt cgcccatgcg ctgggagaaa agctatgagc
      901 cggttggctg ccaagttcgc cgtcttgaag aaagaaggcc gcgccgcctt cgtgcccttc
      961 atcaccgcgg gcgatccgga catggaaacc agcttcgcca tcctggaaaa gctgccgggg
     1021 gcaggagcgg acatcatcga actgggcatg cccttcaccg atcccatggc cgacggcccg
     1081 gcggtgcagg cctcttcggt gcgcgcgctc aaatccggcg ccagcatgac ccgggtgctg
     1141 gaaatggtga aaaaattccg caagaccgac aagaccacgc ccatcgtgct gatgggctat
     1201 tacaatccca ttcatgccta tggcacgtcg cgctttgcca aggatgtggc ggcggcgggc
     1261 gtggacgggc tgatcgtggt cgatctgccg ctggaagaag atgaagtgct gcgcctgccg
     1321 gcccaggccc agggcgtgga cctggtgcga ttcgtgaccc cgaccaccga tgacacaagg
     1381 ctgaagcgta tcgtcaccga ggccagcggc tatctttatt atgtctcggt ggctggtgtc
     1441 accggcacca aggcggtgcc cgaagacgaa gtgcgcgccg ccatggcgcg ggtgcgttcg
     1501 gccaccggtc tgccctgcac cgtgggcttc ggcatccgca gcaaggagca ggccgaggcc
     1561 attgctcgtc tcgccgacgg cgtggtggtg gggtcggcca tcgtcagcat ggttgccgac
     1621 aatctgggca gcggaaaaga caaaattgtt aacgaggttc tggcgctgac ccgcgctttg
     1681 gccggttcca cccatgccgc ccgtcatggt aaggtgcccg tatgaactgg atcaccaaca
     1741 tcgtccgtcc ccgcatcaaa ggcctgatgg gcggcggcaa ggacagcggg cgcggcggcg
     1801 gcgacacgcc ggagaatctc tggaagaaat gtccatcctg cggcgagatg atcttccacc
     1861 gcgacctggt ggccaacctc aatgtctgcc ccaattgcgg ccaccatatg cgcatcggcc
     1921 cggctgagcg tttcgcttac accttcgatg ccggcagttt caccgaattg gtcccgccca
     1981 gcggcgtgcc ggtcgatccg ctgcgcttcc ggggcgagaa gaaatattcc gacgagatca
     2041 aggcggcgcg cagcaagacc gggcgccccg aagccttcac cgccgcgcgc ggcagcctgg
     2101 acggcatgcc ggtgatgatc ggggtgcagc ccttcgactt cctgggcggc acgctgggcc
     2161 tgggcgtggg cgaggcgctg gtggagtcga tgcaggcggc gatcaaggaa aagcggccct
     2221 atatcctgtt cgtggcctcg ggcggggcgc ggatgcagga aggcatactc gcgctgatgc
     2281 agatgccgcg cgccaccatt tgcgtcgaca tgctgcgcga ggcgggcttg ccctatatcg
     2341 tggtgctgac cgatcccact ttcggcggtg tcagcgcctc ctatgccatg ctgggcgaca
     2401 tccagatcgc cgagccgggg gcgcagatcg gcttcaccgg cgcgcgggtg atcgcacaga
     2461 cgattcgcga aaaattgccc gagggcttcc agcgggccga atatctgctg gaacacggca
     2521 tgctggacat ggtcacccac cgcaaggaac tgcgcgccac cctgtcgcgg gtgctgcatc
     2581 tgctgatgag ccagggcaag ccgcgcaaca aggtgcttgc catgccggtc cgtaacggaa
     2641 gtgggcgtaa cggcaatggc ggcgtcaccg cgatcccttg atgctgtccg agaccacgcg
     2701 cagcgacgcg gtgctgaagc gcctgctgag tttgcatccc aagaaaatcg acctggcgct
     2761 ggaccgcatt ctccggttgc tgatggcctt gggcaatccg catctgaaac tgccgccggt
     2821 gatccatgtc gccggcacca acggcaaggg ctcggcctgc gccttcgccc gcgccatgct
     2881 ggaggcgcaa ggcctcaagg tgcatgtcca cacctcgccg catctggtgc gctttcacga
     2941 acgcatccgc atcgccggca agctgatctc ggaagaggcg ctggtgtcgc tgctggaaga
     3001 ggtggagctg gtcaatgccg ggcgcgagat cacgttcttc gagatcaccg cggcggcgat
     3061 gtttctggcc ttttcgcgcc atccagccga tgccacggtt ctggaagtgg gactgggcgg
     3121 cacctttgac gccaccaacg tgattcccca tcccgccatg acggtgatcc agccggtggg
     3181 cctggatcac aaggaattcc tgggcgacga cctggccggg atcgcggcgg aaaaagcggg
     3241 catcatcaag aagggtgcgc cgctggtcat gggtccgcag aacgaaatcg cgcgcgacgt
     3301 catcctgcgc caggccgacc ggctgggtgt ggcggtgttc gagttcggcc aggatttcgc
     3361 cagccgccag gaacatggcc gcatggttta cgaagacgaa gtcggattgc tggatctgcc
     3421 gctgcccagg ctggtggggc ggcaccagat cgaaaatgcc ggcgtcgcca tcgccgcctt
     3481 gcgccatgtt ggaagttttg aaggcaagag attgggctgg ggccaggacg cggcggtgga
     3541 aaagggcctg gccacggtcg aatggccggc gcgcttacag cggctgacca aaggcccgct
     3601 ggtggactcc gcgcccaagg gcgccgaagt ctggctggac ggcggccaca atccgcatgg
     3661 cgccgaggcg gtgtcgcgcg ccatggccga catggaagaa aatggcgagc ggccgctcta
     3721 catgatctgc ggcatgctgg cgaacaagga tgcgctgggc tatctgcgcg ccttcgatgg
     3781 tctggcgcgg catgtggtga cggtggcgat tccggacgag gccgccagcc tgggcgccgg
     3841 cgcgttgtac gatgtggcac ggcgcgccgg gctggatgcg gcgcccgctg aagacctcag
     3901 cgacgccatg ctgcagatcg ccgcctggac gcggttggac gaccaggaca tgccgccgcg
     3961 ggtattgatc tgcgggtcgc tgtatctggc gggaagagtg ctggcggaga acagctgacc
     4021 caatacccta aattgtcatg gcccgcgaat gcgggccacc cagttgggct aagcaatatt
     4081 tcaggggatg gaacaccgat tattctgcgg tgacagaaat ggtatcacct gggtggcccg
     4141 cattcgcggg ccatgacacc gagggggcgt tagatcggcg actcgatcca ttccttgatc
     4201 ttcaacttgg gcagggcgcc gaccttggtc gccgccacct ggccgtcctg gaagatcatc
     4261 atgggcggct gaaccgatga cgacgcagcg taaaataatt ctactttacg ccacgaatgc
     4321 tctgctctgg aatcgacgac tcaatccact ctttgatctt cgacttcggt aacgcgccga
     4381 ctttggtcgc tgccacttgg ccgtcctgga agatcatcat ggtgggaatg ccgcgcacgc
     4441 catatttggt gggcacatgc gggttctcgt cgatgttcag cttggcgatg atcaccttgt
     4501 cgcccaactc ggtcgacagt tcgtccagcg ccggggcgat catgcggcag ggcccacacc
     4561 attccgccca gaaatccacc agcacgggct tcttggcatc caggacatcg gcctggaacg
     4621 aggcgtcgga cactttgatg ggcatgactt tgattcctga actaccgcgg caccatatct
     4681 aggaacgcgc gctttgtggg tcaaggtggg ccgggtcaag acgcgctgca atatcggcca
     4741 gttgggcgtc cagaaccaca tcggaaagct gtagaaggcg gggcccatcg gtgaaaacca
     4801 ggccgcagac gattcgcttg ccgggaaaaa ccttggcggc gccggcacgg taaagcgcca
     4861 tctgggcgag atagacttgc ggcacttcgg cttcgttggt gggcggcggt cggttggtct
     4921 tgaaatccag gatcagcacg tgggtctcgg tcaccgccaa ccggtcgatg cggccgttga
     4981 tgcgcgcgcg ctcctttaat ttataggggc cgaattccga cagctcggcc agcaagcccg
     5041 cttccgcctg gctgccgggg ccgaaagcgg cagcgaactg cggatcgtcc agcaccgcca
     5101 aagtttcgtc caccaggctt tccgcattct tcacgccctg gaggaatttc agcgccacgg
     5161 tgcggcgctt ttcgggcgcg atctccggca gccgcgccag cagggcgtgt accagcaacc
     5221 cgcgacggaa gcgtgatgcg ccggcgttca gcggcgagaa ggtcggtggc ggtgaaccta
     5281 tcgcgtcaga tgggcggatc aggcgcggca gcgccggttc gggtggcgcc tgtgccgcga
     5341 tccagccggg cagggcatcc tgcttggcca cgtccttggc aagatcgcct ttctcatctt
     5401 ccaaggtacc aaaggtggtg atctcgccgt caccgcgcac caccttcacc cccagcgttt
     5461 cggctgcggc ctgggcgagt tggtaccagc aaccggcctt gacgcctttc ttgctttcaa
     5521 agccgcagac ataaagccgg tcgcgggcac gggtcagcgc cacatagagc aggcggcgat
     5581 gctctttaag agtttcttct tccgctttgg ccttggcttc cttcacgatt tccggcgcgt
     5641 cgtcgttggc aagcgggaac agcacatggc cgttgctgta gagcagatgg cctttgcggc
     5701 tgggcggctc gggcaaagcg gtggtatcgg gcaggatgac gatgtcggcc tccagcccct
     5761 tggcgccatg caccgtcatc acccgcactt catcgcggcc gcgctccata tcgcgcttga
     5821 tctcggtgcc accgcgctca acccagtcga ggaaactttc cagcgaaggc gaatggctgc
     5881 gctcatgcgt cagggtcagg gaaaggaatt cctctatcgc gtccgccgat tccagcccca
     5941 gccgcgccag caatttttcc ttggcgccca gcgcagtcag ggcatgggag tagaattcaa
     6001 agggtggggc ataatcggcc cgttccagca tggccgacag gaagccatgc gccgccggga
     6061 agtcgccgcg ccgcgccaca agccgcgtcc acagatgatc cctgcggtca tgcgccagtt
     6121 cgaacagcgc ctcttcgctg aggccgcata acggtgaacg caacagggcc gccagggtaa
     6181 gatcgtcctc gcgctgcagg acaaaccgcc ccagcgcgat caaatccatg gcggcgatct
     6241 gttcggtcag ccgtacccgg tcggcgcccg ccacgggaat acggcgcagt ttcaactggc
     6301 ggatcacctc gccgccaaag ggctcgcggc ggggcagcag gatcatgata tcgcgcgggg
     6361 cgatgggatg gtcatggccg ggcaggcggg cgccgctgcg cagccagccg gcaatgcgat
     6421 cggccacctg taccgccagc cgggcgacag ggctttgttt ctgcaccgtg tccacgggcg
     6481 cgtaatggtc cacctcgtct tcctcttccg gcaccaaagc gggccagaat tcgatgccgc
     6541 ccttggccgt ctggcgatgg gcgcgatgtt caatcacgtc gccgcgaaag gtcaggccgg
     6601 cgcgcgccgc ctcgccggcg aacaccgtgt ccacgaacgc caggatttcc ggcgcggaac
     6661 ggcgcgaagt gatcagcggc acttcgtgca ggcgctgctc cgccccggcg atgagagccg
     6721 cgaaatggcg gcgattgatg tcgaattggc tgggatcggc gccctggaaa ctgaaaatgg
     6781 attgcttttc gtcgccgacc gcgaaaatgg tgcggacctg cgcacggtcg cgcccgatgc
     6841 cggcgaaaaa ctcctccgtc agcttcttca cgatctccca ttgctcaggg ctggtatcct
     6901 gggcctcgtc gatcagcaga tggtcgatgc cgccatccag cttgtagagc acccaaccgg
     6961 cggcgccgcg cttgtgcagc aggttgcggg tttccaggat cagatcgtca tagtccagca
     7021 ctccgcgcag ccgcttggcg gcttgatagt cgcggcgcat cgcctcgatc agcgtcaggg
     7081 cggcatgggc cagttcggcg gcgcgggcag cgcgatggcg ttcggcggtg gtacaatagc
     7141 gcgactgtaa cttggtcaaa tagtccagca ggtcagggcg ggcatccccc agcgccttgc
     7201 ttgccagctt cttgcgcggc tcgcccttgg cggtgaggaa gaaactgtcc agggcggcaa
     7261 agctgccggc gatatcgccg tcgaacacgg cgcccagcgc ggccgctgcc tcgacatcgc
     7321 ttttgccgcc gccgctcagc caggcgcgaa ccgcgcgcag ctgttcgatc tcgcgcgcca
     7381 ggtcggcgca gaaattctcg ccgatagtct gcaccgtctc gccgtcttcc aggccgtggc
     7441 tgctgcgcac cgtggcggcc agatcttcca cgtctgcgaa aaaccggtcc agtttgcgcc
     7501 ggtcgccgcc cagggcggca tccaggattt tggtcagggt cgcttcgctg gtctcggtca
     7561 ccaacagcgc caccgcctcg gccagcactg cgtcgcccga accggcgcgt tccagcacgg
     7621 caaagcgcgc ctcgccgatc agttcgcgcg ccgactgatc atccagcacc tcgaaggcgg
     7681 gcgggatatt ggcctcgatg ggaaaacgcg acagcaccac ctggcagaag gcgtgcaggg
     7741 tgagaacctt cagcccgccg ggcgtttcca gcgccccggc gaacagccgc cgcgccttgg
     7801 gcagggaggc atgcgcgtcg ccgccgatgc cgatgatgcg catccgcagc gcctcgtccg
     7861 gcagcatgga ccattcgccc agctgtttga acagccggtc ctgcatttcc gccgccgccg
     7921 ccttggtgaa ggtgaggcag agaatttttc ccggctgggc gtcggccagc agcagccgcg
     7981 ccacccggtt ggccagggtg taggtcttgc ccgccccggc attggccgcc acccaggcgg
     8041 agatttccgg atcggaggcg atcatggaag gatcgcgcat cactcctcct ccgcccagcc
     8101 ggagggcgac cattcgcgca cccgtgccag atggtcgtaa tcgcccgcaa tgtcggcgcg
     8161 gtaaggccgc acccgggagc gatagcccgt ggcgcgctcg ctgaaccagg cgatgcgccg
     8221 cgccagttgc gccgccgcct ccgctgccag cgcgggcgca tcctcgataa agcggggtgc
     8281 gcgcgcctgc ttctcactgg ccagactcag atagatcagg tcttcggtga tgcgcctgcc
     8341 gatgccgaac ccgtcttccg ccagcatggc ggcttccagc ggcagctgcg gcgacagcaa
     8401 ttgctcgacc tgctttttgc tgggggcggc gccggtcttg tagtccagga tcgcgcactt
     8461 gccatccttc agcacgtcga tgcgatcggc gatgccggac aaagtgaaat cgccgatctt
     8521 gagactgccc ttgatctcca gatgcgaggc ggtgatggca tcctggcggc cgcgctcgaa
     8581 ttccacaaag ccgcgcgccg cgccggcaaa acgcggccgc cacagcgcca gcgccgcctt
     8641 ggggattccg gcagctgcga aaacctggtc ggcgatggtg gccaattgcc gttcggcgtc
     8701 gtcgggcgga gcgtttttat atttggcgat gaagatttcc agcgccttgt gcaaggcggt
     8761 gccgcgctcg agcggcccga tggtttcgtc caacgcctcc agtggccgca gcttcagcac
     8821 atgcttggca taaatcgcat agggatcgcg cagccaagtc tcgatctccg tcaccgacag
     8881 gcggcgcggg cggctttcca ccggcggggt gggcgccgga cgcggcaggc gcgggct
//
LOCUS       DATMDK010000264         2794 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_3093967,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000264 DATMDK010000000
VERSION     DATMDK010000264.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2794)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2794)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2794
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3093967"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(40..1290)
                     /locus_tag="VNN98_05120"
     CDS             complement(40..1290)
                     /locus_tag="VNN98_05120"
                     /inference="COORDINATES: protein motif:HMM:NF004834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HWM61509.1"
                     /translation="METITTTCVIAGGGPAGMMCGYLLARAGVDVTVLEKHADFLRDF
                     RGDTVHPSTLQVMHELGLLTEFLKLPHTRIRTANLQIGDAHFLVGNFARLPTLCKFIA
                     LMPQWDFLDFLANEARKLPNFHLLMQTEAKDLLAQGDRICGLLATGPRSVGSSQSDQE
                     KVTIQIKAALTIAADGRHSLLRDKSGLKVQDLGAPFDVLWLRLPVLPGDPADLIGKVK
                     DGQLLVMIYRTDYWQCAYLIPKGGFDTIKAEGLSKFRARLKQIAGFAAGRVDDAIKDF
                     DQVKLLTVTVDRLSKWARPGLLCIGDAAHAMSPIGGVGINLAIQDAVAAANILGPVLQ
                     KGVPGLRDLKKVQQRREFPTRVIQAMQVAAQNLMLAPTLAATQTPKPPLLFKILNAWP
                     WARQFPARLIGMGVRPEHVRLRKR"
     gene            1363..2115
                     /locus_tag="VNN98_05125"
     CDS             1363..2115
                     /locus_tag="VNN98_05125"
                     /inference="COORDINATES: protein motif:HMM:NF015297.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldolase/citrate lyase family protein"
                     /protein_id="HWM61510.1"
                     /translation="MRPNRLRELWAAGKPALNCWITLPGTLAAEMLAHQGWDSLTVDL
                     QHGASDFASMCAMFAAISTTNTVPLMRVSWNTPGDVMRALDAGAYGVICPNIDSAEEC
                     QRFVGACHYPPDGYRSFGPKRGLLYGGPDYVHHANKTILAMIQIETLKGLQNVDDIAR
                     VRGLDMLYVGPSDLGLALGREARQNQTDPVVMEAVDKILKSAKRAGIKAGMHCTSADY
                     AREMIEKGFDFVTVISDENLLARGAAERAKLA"
     gene            2332..>2794
                     /locus_tag="VNN98_05130"
     CDS             2332..>2794
                     /locus_tag="VNN98_05130"
                     /inference="COORDINATES: protein motif:HMM:NF014795.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030976 - thiamine pyrophosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine pyrophosphate-binding protein"
                     /protein_id="HWM61511.1"
                     /translation="MNGAESLVHTLAGSGIDVCFGNPGTSEMHFVAALDREPKMRGVL
                     CLFEGVAAGAADGYARMTGRPAATLLHLGPGFANAVSFLHNARKAASPVVNIVGDHAT
                     AHAQYAQAPLSSDIMGICAPVSHWLQRSVCAADVASDGARAVQVARAAPGQV"
BASE COUNT          492 a          862 c          910 g          530 t
ORIGIN      
        1 cggagaatgg actttcgatg ccgcggcgca gcaatcagtt caacgctttc gcaagcgcac
       61 atgttccggc cgcacgccca tgccgatcag acgcgcggga aactgccttg cccaaggcca
      121 ggcgttcagg attttgaaaa gcagcggcgg cttgggtgtc tgcgttgccg ccaaggtagg
      181 cgccagcatg aggttttgcg ccgcaacctg catggcctga atcacccggg tgggaaattc
      241 gcgccgctgc tgcactttct tcaggtcgcg caagccgggc acgccctttt gcagcacggg
      301 gccgagaata ttggccgcgg ctaccgcgtc ctggatggca aggttgatgc ccaccccgcc
      361 gatgggcgac atggcatgtg ccgcatcgcc gatacacagc agccccggac gcgcccattt
      421 gctcaagcgg tccaccgtca cggtcaaaag cttgacctga tcgaaatcct tgatggcgtc
      481 gtccacccgg cctgcggcga agccggcgat ctgcttcagc cgggcgcgga atttggacag
      541 accctccgcc ttgatggtgt cgaagccgcc cttggggatc agataggcgc actgccagta
      601 atcggtgcga tagatcatca ccagcagctg tccgtctttc accttgccga tcaggtcggc
      661 gggatcgccc ggcagcaccg gcaggcgcag ccacagcacg tcgaagggcg cccccagatc
      721 ctgcaccttc aggccggact tgtcgcgcaa cagcgaatgg cggccgtcgg cggcgatggt
      781 cagggcggcc ttgatctgaa tggttacttt ttcttggtcg ctctgactgc tgccaacgct
      841 ccgcggcccc gtcgccagaa gcccgcagat acggtcgcct tgcgctaaca ggtccttggc
      901 ctcggtctgc atcagcagat ggaaattggg cagctttctg gcctcattgg cgagaaagtc
      961 cagaaagtcc cattgcggca tcaaagcgat gaacttgcag agcgtgggca ggcgggcgaa
     1021 gttgcccacc agaaaatgcg cgtcgccgat ttgcagattg gcggtgcgga tgcgggtatg
     1081 cggcagcttg agaaactcgg tgagcagtcc cagttcgtgc atgacctgca gggtggaggg
     1141 atgcaccgtg tcgccgcgaa aatcgcgcag gaagtcggca tgtttttcca gcaccgtcac
     1201 gtccaccccg gcgcgggcca aaagatagcc gcacatcatg cccgctgggc cgccgcccgc
     1261 gatgacgcaa gtggttgtaa tcgtctccaa cgctgcccct cttttgtcca tcctagcgag
     1321 ccgccttgcg cccgccaacg ctgggcgtct aacctcccgc ccatgcgccc caaccgtctt
     1381 cgcgaattat gggccgccgg caagccggcg ctgaattgct ggattaccct gccggggacc
     1441 ttggcggcgg aaatgctggc ccatcagggc tgggacagcc tgacggtgga tctgcagcat
     1501 ggcgccagcg acttcgcctc catgtgcgcc atgttcgccg ccatctccac caccaacacg
     1561 gtgcccttga tgcgggtgtc ctggaacacg ccgggcgatg tgatgcgggc gctggatgcg
     1621 ggggcttacg gcgtgatctg tcccaatatc gacagtgcgg aggaatgcca gcgctttgtc
     1681 ggcgcctgtc actacccgcc cgatggctat cgcagcttcg ggcccaagcg cgggctgctc
     1741 tatggcggtc ccgattatgt ccatcacgcc aacaagacca tcctggcgat gatccagatc
     1801 gagaccctca agggtctgca gaatgtggac gacatcgcgc gggtgcgggg gctggacatg
     1861 ctttatgtcg ggccgtcgga cttgggcttg gcgctggggc gcgaggcgcg gcagaaccag
     1921 accgatccgg tggtaatgga agcggtggac aagattttaa agtcggccaa acgggcggga
     1981 atcaaggcgg ggatgcattg caccagcgcc gattatgcgc gtgagatgat cgaaaaaggc
     2041 ttcgatttcg tgaccgtcat ctcggacgag aatctgctgg cgcgcggcgc cgccgagcgg
     2101 gccaagctgg cttgaattct gccttgaacc tgggccggat cggattatat ttgcgttgca
     2161 acaatctttt gaaaaggagg tgatccagtg tctcattgtc atgacctgcg gacgaacgcc
     2221 gcgaactgga tccttctcgc gaaggacagc gccgcgtaac gggcgtcttc agtacgacaa
     2281 tgtcgggccg tcacccttgc gggtggcggc ccttcttgtt catggtggcc tatgaatggg
     2341 gccgaaagct tagtccatac cttggccggc agcggcatcg acgtctgctt cggcaatccg
     2401 ggcacgtcgg aaatgcattt tgtggcggcg ctggaccgcg agcccaaaat gcgcggcgtg
     2461 ctgtgcctgt ttgaaggcgt ggcggcgggg gcggccgacg gctacgcccg catgaccggc
     2521 aggcccgccg cgaccctgtt gcatctgggg ccgggcttcg ccaatgcggt gtcctttttg
     2581 cacaatgcgc gcaaggcggc ctcgccggtg gtcaatatcg tgggtgacca tgccacggcc
     2641 cacgcgcaat atgcccaggc gccgctgtct tccgacatca tgggaatctg cgccccggtt
     2701 tcgcactggc tgcagcgctc ggtttgcgcc gccgatgtgg cgtccgacgg cgcgcgggcg
     2761 gtgcaggtgg cgcgcgccgc gccgggccag gtgg
//
LOCUS       DATMDK010000265         4317 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2183070,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000265 DATMDK010000000
VERSION     DATMDK010000265.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 4317)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4317)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4317
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2183070"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(98..3094)
                     /locus_tag="VNN98_05135"
     CDS             complement(98..3094)
                     /locus_tag="VNN98_05135"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HWM61512.1"
                     /translation="MFEIKATSLKSKLLLGATTIAALSASTAAFAQQVATESVVVTGS
                     RIPQRNIEGSSPVTSVTSQEVKLQGTTSIVDLLRTLPSVVNDGDSDSVTNGSGGLATI
                     DLRNLGTKRTLVLVDGKRLVASNASLEIDTNIIPAGMVDRVEVLTGGDSAVYGSDAVA
                     GVVNIILKKDFEGLQIDSQVTFTDHNFDGVKHDTYGLLGFNSADGKGNLTIYAEYMHR
                     DPVTEAQRTYGAHALAATNFTGCAATTPATHFGGFCFSGSGTEPQGRIKTAALGGPYV
                     GKTTIFNPDQTLTPYAGQTFNFAPYQYYQSQGERYAFGATGHYKVNDSIDFYTRLTFA
                     ENKNTTQIGPSPLSANFLINCGNPGLSVEERQTIFGSTAAGGTTAAQCATTSPTSSLY
                     TSAANGNSTYAATTDFNKVQRLVSLGLRLTQDGPRITANDHNTFQLVGGVRGDIPGLP
                     NWTYDVSAQYGHTGNQLVEYNDALKGNFQNGLLVNPATNACYSGAPCVPLNIFTPGSI
                     SAAGINYIRENLLTVASIDQSDIQASATGDLGAWGIQSPWAKDPVGASIGGEYRQEGA
                     NIQPDNNKATGNLLGFLAASPSVGRFHVAEGFGELAIPIIQGMPFAEDLSLQAAYRFS
                     SYDRAGDTTTYRAGGQWAPTSDFKFRASYDRAARAPNVAELFTPAGGTSSNSGRDPCS
                     AITGGITTTAALCQATGVPAGVAFTGALNCPTNQCQGAVGGNPFLKPEVATTREAGIV
                     LTPSFIRNFSATVDYYDINIKGFIESTPLPTILANCYSTAINTTQSASNPYCSFIHRD
                     ALGSIFTANSGYVVQAEGNIGGDHVRGIDFESNYSMDLSDIGMDNMGGLSFNYRGTWV
                     LQNDSLFPGAPTLHCAGKYGSNCGEPQNRLRGNLRTTWTDPTGDLNISVMWRYIGAVA
                     SELYPGFTNTPSLNFGSKNYIDLSATYAITPGLEVRGGIRNLFDQNPPLTDNNTAPAS
                     DINGNTFPNTYDALGRQIFLGVTAKL"
     gene            3570..>4317
                     /locus_tag="VNN98_05140"
     CDS             3570..>4317
                     /locus_tag="VNN98_05140"
                     /inference="COORDINATES: protein motif:HMM:NF024816.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HWM61513.1"
                     /translation="MIPLSSSRPSGFQTAFARVERLRRAGQPAGAEQLCRQLLQQQPA
                     SVAVLNALAMLLADRGQLGEAKALLQSAVSLSPDEAALHNNLGNLLYQDGDMTGAEQA
                     YRKAVALKGDYAESWFNLGVARSALDRREDAFIAYERVVAIAPDYWPAQVQIGAMLHQ
                     KGDNDAALKALDASMPAAADYYDAHYYRGTVLQALKRHDDAMAAFAKAIALKPLRFEA
                     HYALAGTLAATGREDEAIRSYKRAIEAQPDY"
BASE COUNT          818 a         1212 c         1445 g          842 t
ORIGIN      
        1 cgcaatcatg tcttcaggct atccccgtcg gcggctcgcc acaaaagaaa acagcggctg
       61 ccctgcggca gccgctgtct tcaagctatc gaggatatta cagcttcgcg gtgacaccca
      121 ggaagatctg gcggcccaaa gcatcgtacg tgttcgggaa agtattgccg ttgatgtcgc
      181 tggccggggc ggtgttgttg tcggtcagcg gcggattctg atcgaacagg ttgcggatac
      241 cgccgcgaac ttccaggcct ggcgtgatgg cgtaggtggc ggaaaggtcg atgtagttct
      301 tggagccgaa gttcaggctg ggcgtattcg tgaagccggg atagagctcc gaagccacgg
      361 caccgatata gcgccacatt accgatatgt tcaggtcgcc cgtcggatcg gtccaggtgg
      421 tgcgcaggtt gcccctcagg cggttctgcg gctcgccgca attcgagcca tacttgccgg
      481 cgcaatgcag ggttggggca ccggggaaca gcgagtcgtt ctgcagcacc caggtgccgc
      541 ggtaattgaa cgacaggccg cccatattgt ccatgccgat atcgctgagg tccatgctgt
      601 agttggactc gaaatcgata ccgcgcacat gatcgccgcc gatattgccc tcggcctgga
      661 ccacatagcc cgaattcgcg gtgaaaatcg agcccaaggc gtcacgatgg atgaagctgc
      721 aataaggatt gctggcgctc tgggtcgtgt tgatagcggt cgagtagcaa ttggccagga
      781 tggtcggcaa cggcgtcgac tcgatgaagc ctttgatgtt gatgtcgtaa tagtcgaccg
      841 tggcggagaa gttgcggatg aaggaaggcg tgagcacgat gcccgcttcg cgggtggtgg
      901 ccacttccgg cttcaggaag gggttgccgc ccacggcgcc ctggcactgg ttggtcgggc
      961 agttgagggc gccggtgaac gcgacgcccg ccggcacccc ggtggcctgg caaagcgcgg
     1021 ccgtggtggt aatgccgccg gtgatggccg agcacggatc gcggcccgaa ttggatgagg
     1081 tgccgccggc cggggtgaac agttccgcca cgttgggagc gcgggccgca cggtcatagg
     1141 aggcacggaa cttgaagtcc gacgtgggcg cccactggcc gccggcgcga tacgtggtgg
     1201 tgtcgccagc gcggtcatag gacgagaaac ggtaggccgc ctggaggctg agatcctcgg
     1261 caaacggcat gccctgaata atcgggatcg ccagttcgcc gaagccttcc gccacatgga
     1321 aacggccgac cgaaggactc gccgccaaga agcccagcag attgcctgtg gccttgttgt
     1381 tatccggctg gatattggcg ccttcctgac ggtattcgcc gccgatcgac gccccgaccg
     1441 gatccttcgc ccaaggcgac tgaatgcccc aggcgccgag atcgccggtg gccgaagcct
     1501 ggatgtcgga ctggtcgatc gacgccacgg tcagcagatt ttcgcggata tagttgatgc
     1561 ccgccgccga gatgctgccc ggggtgaaga tgttcaaggg tacgcaggga gctccggaat
     1621 agcaggcgtt ggtggccggg ttgaccagca agccgttctg gaagttgccc ttcagcgcat
     1681 cgttatattc gacaagctgg ttgccggtgt ggccgtactg ggccgacacg tcgtaagtcc
     1741 agttcggcaa tccgggaatg tcgccgcgca cgccgccgac cagctggaag gtgttgtggt
     1801 cgttggcggt gatacgcgga ccgtcctggg tcaggcgcag cccgaggctg accaaacgct
     1861 ggaccttgtt gaaatcggtg gtcgcggcgt aggtgctgtt gccgttggcg gcgctggtgt
     1921 agagcgacga ggtcgggctg gtcgtggcgc attgcgctgc ggtggtaccg ccggccgcgg
     1981 tggaaccgaa gatggtctgg cgttcttcga ccgacaggcc cggattgccg caattgatga
     2041 ggaagttggc cgacagcggc gacgggccga tctgcgtggt gttcttattc tccgcaaagg
     2101 tcagccgggt atagaagtcg atgctgtcat tgaccttgta atggcccgtg gcgccgaagg
     2161 catagcgttc gccctggctc tgataatact ggtatggcgc gaagttgaag gtctggccgg
     2221 catagggggt tagggtctga tcgggattga agatggtggt cttgccgaca tagggtccgc
     2281 ccagcgccgc ggtcttgatg cggccttgcg gctcggtgcc ggaaccggag aagcagaagc
     2341 cgccgaaatg ggtggcggga gtggtggcgg cgcagccggt aaaattggta gcggccaggg
     2401 cgtgggcgcc ataggtgcgc tgggcttccg tcaccgggtc gcggtgcata tattccgcat
     2461 aaatcgtcag gttgcccttg ccatcggcgg agttgaagcc cagcaggccg taagtgtcat
     2521 gcttcacgcc gtcgaaattg tggtcggtga aggtgacctg cgaatcgatc tgcaggcctt
     2581 cgaaatcctt tttcaggatg atgttgacca cgccggccac cgcgtcggac ccgtacacag
     2641 ccgagtcgcc gccggtgaga acttcgaccc ggtcaaccat gccggccggg atgatgttgg
     2701 tatcgatttc cagagaagca ttggaagcga ccaggcgctt gccgtcgacc agcaccaacg
     2761 tgcgcttggt gccgaggttg cgcaggtcga tggtggccag accgccggag ccgttggtca
     2821 ccgagtcgct gtcgccgtca ttcacgaccg aggggagagt cctgagaaga tcgacgatgc
     2881 tggtcgtgcc ttgcagcttg acttcctgcg aggtgacgct ggtgacgggg cttgagccct
     2941 caatgttacg ctggggaatg cgcgaaccgg tgacaaccac ggattccgtg gcaacctgct
     3001 gcgcgaaggc ggcggtgctg gcgctgagcg cggcaatggt ggtggcgccc agaagcaatt
     3061 tcgacttcag gctggtggct ttgatctcga acaatgtggt cccctttgtt cagtctgttg
     3121 cgcgatgtct cgtgccgaaa gcactgagct gttgtcaccg ctgttaaaaa tgacgctaag
     3181 gcgccatcac aatggggtca aaaagaatta ccgcggcgca caaaatccgt atgcgcttgt
     3241 ggcatttagg tgtcattttt cgaccataat gatgaaccgc tatcggccag ggagttgtta
     3301 agcaatatta acggcagaga atgtctgttt ttgaaatttt atgtcaaacg gttttgccga
     3361 agtcagccca tgcgccaaca aaagacaatg ttatctgtga aaacaaagcc aaaaccgggt
     3421 tttggcgctc ccactgttcc ccaaacgccc caaaaccgat ccggcagcct gacccggtgt
     3481 caagccgaag gagatatcag gacgttgcag cgcaaacggc cggctgctcc cgcaatgccc
     3541 tgctggaaca acttggatat agtcggccca tgatccctct ttcttcttca cgcccatcag
     3601 gttttcagac agcctttgcg cgggtcgagc ggctgcggcg cgcgggacag cccgccgggg
     3661 ccgagcagtt gtgccgccaa ttgctgcagc agcaacccgc gtctgttgcg gtgctgaacg
     3721 cactggcgat gctgctggcg gaccgcggcc agcttggcga ggcgaaagcc ctgctgcaaa
     3781 gcgcggtcag tctgtcgccg gacgaagccg cgctgcacaa caatctgggc aaccttctct
     3841 accaggacgg ggatatgacc ggcgccgaac aggcctatcg caaggcggtg gcgcttaagg
     3901 gcgattatgc ggaaagctgg ttcaacctcg gcgtcgcccg cagcgccctg gaccggcgcg
     3961 aggacgcctt tatcgcctat gagcgcgtgg tggcgatcgc gcccgattac tggccggcgc
     4021 aggtccagat cggcgccatg ttgcaccaga agggcgacaa tgacgccgcg ctcaaggcgt
     4081 tggatgcgtc catgcctgcc gccgcggatt attacgatgc gcattattat cgcggcaccg
     4141 tgctgcaggc gctgaagcgc cacgatgatg ccatggccgc cttcgccaaa gccattgcgc
     4201 tgaaaccgct gcgatttgaa gcccattacg cgctggcggg gacgctggcg gcaacggggc
     4261 gcgaagacga ggccatccgt tcctacaagc gcgcgatcga ggcgcagccc gactatc
//
LOCUS       DATMDK010000266         4905 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1967359,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000266 DATMDK010000000
VERSION     DATMDK010000266.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 4905)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4905)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4905
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1967359"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2107)
                     /locus_tag="VNN98_05145"
     CDS             complement(<1..2107)
                     /locus_tag="VNN98_05145"
                     /inference="COORDINATES: protein motif:HMM:NF013069.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HWM61514.1"
                     /translation="MNLSQPFIERPVMTTLVMAALVIFGAYGYSSLPVSDLPNIDFPT
                     ISVMASLPGADPDTMASSVASPLENQFSTINGIDQMTSSSTQGSTQIQLQFALDRSLD
                     GAAQDVQSAISAATRNLPKALPQPPTFRKQNPADLPILFLAMRSATLKPSEVDEYAET
                     LLARQISTIEGVAQVGVFGSAKYAVRIQADPAALATRQIGIDKLVTAVSNANVNLATG
                     ALNGPTRSTVIHTGGQLNNAAEFNNQIVTYQNGSPVRLQDVAKVIDGVENPYSLSWYK
                     DQPAIVLAVFRQPGSNVVDVINSIKKVLPQFKATLPPSVQLDIVFDRSQVIRSSIGDV
                     QTTLLIAGALVVGVIFVFLRRVSATIIPSLALPIAIIGTFAGMSAFGFNLDNLSLMAL
                     TLSVGFVVDDAIVMLENIVRHIELGEKPYDAAMKGSSEIGFTILSMTISLAAVFIPIV
                     FMGGIVGRLLHEFAVTIILAILFSGVISITLTPMLCARILKDEHGLAHNAFYRFSENT
                     FNAVQAFYDRTLRWSIGHGRIILGTFAASLVAAVALLAIMQQDFLPSDDTGRLQGNIQ
                     AANGTSYAQMALYTRQAAKIVAQDPAVEGVLAQIEGANGSAGTNTARLMMISLKPLSQ
                     RKSGPDAIIRRLRPKLSRIAGANVFITNPPAIRLGARMARSNYQYTLQGLDLSQLQDY
                     SGRLMDALRKQSGFVDVVSD"
     gene            complement(2127..3389)
                     /locus_tag="VNN98_05150"
     CDS             complement(2127..3389)
                     /locus_tag="VNN98_05150"
                     /inference="COORDINATES: protein motif:HMM:TIGR01730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HWM61515.1"
                     /translation="MNVQMPSLQPPPARDGAPIGQVRDDAPAGRIRTYAIGGVALILA
                     LGGWWYFTHASAPAPKHNLAAPVKVAPVEVRTMSVIERTIGTVLANSTVSVNARIQGQ
                     MTKAFFTEGQMVKTGDVLFQIDPRPYQATYDNALASMATAKAKADRYARLKAQNAIAG
                     QDFDDAQAAYLEAKATAESARLNLEFTTIRAPVNGKTGPILIQPGNMVAASTASTSAT
                     PLVTLNEIQPVKISLSLPQSDLPRIQEMQRTKGLTVTIALHDAGGAADIQVPVNFISN
                     AVTGATGTIELRATYPNADMALVPGQLVDVVVALSEIPNAILVPREAVNTGPDGQFVY
                     AVKDGTAQQVPVKVLFDDSVYDAVSGSLHKGEQVITDGQLRVIPGAKVSITGAKRQAG
                     PEAGPGSDGKGPMTSGRRRVKHQSDNAG"
     gene            complement(3386..3664)
                     /locus_tag="VNN98_05155"
     CDS             complement(3386..3664)
                     /locus_tag="VNN98_05155"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61516.1"
                     /translation="MQLSALTAFISLFGYLWGGKSSIFGTFMRGFSHITPLIKPKFQD
                     PATAGQLGNNQSIAEPAPPNRRNAAEVKVYIVNQTTLGPGSPYQDRAA"
     gene            3756..>4905
                     /locus_tag="VNN98_05160"
     CDS             3756..>4905
                     /locus_tag="VNN98_05160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017980090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP-binding protein"
                     /protein_id="HWM61517.1"
                     /translation="MEIRNIAIIAHVDHGKTTLVDQLLKQSGSVRENQHMAERAMDSN
                     DQERERGITILAKCTSVEWHGVRINTVDTPGHADFGGEVERILSMVDGVVLLVDAAES
                     VMPQTKFVLSKALKLGLKPIVVINKIDRHDAQPKETLESIFDLFLALDANDDQLNFHY
                     LYASGRNGWAVKELEDERKNLDPLFQLIVEDVPPPKPYQLATEEHPFKMLVTTLEADN
                     FLGRILTGRIESGIITTNRNIKALNRDGEIIEKTRVTKLLAFRGLARVPVERAEAGDI
                     VAIAGLEEATVADTLCDLTVTDPIPSHPIDPPTLAMTISVNDSPYAGREGDKVQSRVI
                     RERLLREAEGNVALKVQETGDGDFEVAGRGELQLGVLIESMRREGFELS"
BASE COUNT          920 a         1473 c         1625 g          887 t
ORIGIN      
        1 tgtcggaaac cacatccacg aaaccggact gcttgcgcag cgcgtccatc agccggccgg
       61 aataatcctg cagctggctg agatccaggc cctgcaacgt gtactgatag ttggaacggg
      121 ccatgcgcgc gcccagccgg atggcgggcg ggttggtgat gaacacattg gcgccggcaa
      181 tgcgcgacag tttggggcgc aggcggcgga tgatggcgtc ggggccggat ttgcgctggc
      241 tcaacggctt gagcgagatc atcatcagcc gcgcggtgtt ggtgccggcg ctgccattgg
      301 cgccttcgat ctgcgccagc acgccttcca cggcagggtc ctgggcgacg atcttggcag
      361 cctggcgggt atagagcgcc atctgggcat agctggtgcc attggcggcc tgtatgttgc
      421 cctgcaaccg gccggtatcg tcgctgggca ggaaatcctg ctgcatgatc gccagcagcg
      481 ccacggcagc caccaggctg gcggcgaagg tgcccaggat gatccggcca tggccgatgc
      541 tccagcgcag ggtgcggtcg taaaaggcct gcacggcgtt gaaggtgttt tcgctgaacc
      601 ggtagaaggc attgtgcgcc aggccatgct cgtccttgag gatacgggcg cacagcatcg
      661 gggtgagggt gatggagatc accccggaga acaggatcgc caggatgatg gtgacggcga
      721 attcgtgcag cagccgtccc acaatgccgc ccatgaagac gatggggatg aacaccgccg
      781 ccagggaaat ggtcatggac aggatggtga agccgatctc ggaggatccc ttcatcgccg
      841 cgtcataggg tttttcgccc aactcgatat ggcggacgat attctccagc atcacgatgg
      901 cgtcatccac cacaaagccg accgacaggg tcagcgccat cagcgaaaga ttgtccaggt
      961 tgaagccgaa ggcggacatg ccggcaaaag tgccgatgat ggcgatgggc agcgccagcg
     1021 acggaatgat ggtggccgat acccggcgca ggaagacgaa gatcaccccc accaccagcg
     1081 cgccggcgat gagcaaggtg gtctgcacgt ccccgatcga ggagcggatc acctggctgc
     1141 ggtcgaacac gatgtccagc tggaccgagg gcggcaaggt tgccttgaat tgcggcagca
     1201 cctttttgat agagttgatc acgtccacca cgttggagcc gggctggcgg aataccgcca
     1261 gcacgatggc cggctggtcc ttgtaccagc tcagcgaata gggattttca acgccgtcga
     1321 tcaccttcgc cacgtcctgc aggcgcaccg ggctgccatt ctggtaggtg acgatctggt
     1381 tgttgaattc cgcggcattg ttgagctggc cgccggtatg gatgacggtc gagcgggtgg
     1441 gcccgttcag cgcgccggtc gccaggttga cattggcgtt cgacaccgcg gtgaccagct
     1501 tgtcgatgcc gatctggcgg gtggccagcg ccgcgggatc ggcctggatc cgcaccgcat
     1561 atttggccga accgaacacg cccacctgcg ccacgccctc gatggtggaa atctggcggg
     1621 ccagcagggt ttcggcatat tcgtccactt ccgacggctt gagcgtcgcc gagcgcatcg
     1681 ccaggaacag gatcggcagg tcggccggat tctgtttgcg gaaggtgggg ggctggggca
     1741 gcgccttggg cagattgcgg gtggcggccg agatcgccga ttgcacgtcc tgggcggcgc
     1801 cgtccaggct gcggtccaag gcgaattgca actgaatctg ggtcgagccc tgggtgctcg
     1861 acgaggtcat ctggtcgatg ccgttgatgg tggagaactg gttctccagc ggcgaagcca
     1921 ccgaggaagc catggtgtcg ggatcggcgc cgggcaggct ggccatgacg gaaattgtcg
     1981 ggaagtcgat gttcggcaga tcggaaaccg gcaggctgga atagccatag gcgccgaaga
     2041 tcaccagcgc ggccatgacc aaggtggtca tgacgggacg ttcgataaag ggctgcgaca
     2101 gattcatggt tcgtgtccgg gggcgatcag cccgcgttat ccgactggtg cttgacgcgg
     2161 cggcgtccgc tggtcatcgg gcccttgcca tccgagccgg gtccggcctc tggtccggct
     2221 tggcgcttgg cgccggtgat gctgaccttg gcgccgggaa tgacgcgcaa ctggccatcg
     2281 gtgatcacct gctcgccctt gtgcagcgat ccggaaaccg cgtcatagac gctgtcgtcg
     2341 aacagcactt taaccggcac ctgctgcgcc gtgccgtcct tgacggcata gacgaattgg
     2401 ccgtcggggc cggtattgac cgcctcgcgc ggcaccagga tggcattggg gatctccgac
     2461 agcgccacca ccacatccac cagctggccc ggcaccagcg ccatgtcggc attgggataa
     2521 gtggcgcgca gttcgatggt gccggtcgca ccggtcacgg cattggagat gaagttgacc
     2581 ggcacctgga tgtcggcggc cccgccagcg tcatgcagag cgatggtgac ggtcaggccc
     2641 ttggtgcgct gcatttcctg gatgcgcggc aggtcggact gcggcaggga gagcgaaatc
     2701 ttcaccggct ggatttcgtt caaggtgacc agcggcgtgg cactggtgct ggcggtgctg
     2761 gcggcgacca tgttgccggg ctggatcagg atcgggccgg tcttgccgtt gaccggcgcg
     2821 cggatggtgg tgaattccag gttcagccgc gccgattccg cggtggcctt ggcttccaga
     2881 taggcggcct gggcgtcgtc gaaatcctgg ccggcgatgg cgttctgcgc cttcagccgg
     2941 gcatagcggt cggccttggc cttggcggtg gccatcgagg ccagggcatt gtcatacgtc
     3001 gcctgatagg ggcgcggatc gatctgaaac aggacgtctc cggtcttgac catttggcct
     3061 tccgtgaaaa aagcctttgt catctgcccc tggatacggg cgttcaccga aacagtggaa
     3121 ttggccagca cggtgccgat ggtgcgctcg atcaccgaca tggtgcggac ttcaaccggc
     3181 gccaccttga ccggcgccgc caggttgtgc ttgggcgcag gcgcgctggc atgggtgaaa
     3241 taccaccagc cgcccagggc caggatcagg gccacgccgc cgatcgcata ggtgcgtatc
     3301 cgcccggccg gggcatcgtc gcgcacctgc ccgattgggg cgccatcccg cgccggcggg
     3361 ggttgcagcg aaggcatctg gacattcatg cggcacgatc ctgatacggc gaccccggcc
     3421 caagggtcgt ttggttcaca atatacactt tcacttccgc cgcattgcgg cggttaggag
     3481 gggccggttc cgcaatgctt tggttatttc ccaactgtcc ggcggtggcc ggatcttgga
     3541 atttcggctt tatgagcggg gttatatggg aaaaccctct cataaatgtg ccaaaaatgc
     3601 ttgatttgcc gccccacaaa tacccgaaaa ggctgataaa agccgttaat gccgacaatt
     3661 gcatgacagt tgccggcacc ggcgatgttg ctccgcagca gggcctacgt ctataagccc
     3721 gccaaacccg cgcccctctt attgattctg gtcccatgga aatccgcaac atcgccatca
     3781 tcgcccatgt cgaccatggc aagaccacct tggtggacca gctgctcaaa cagtccggtt
     3841 cggtacgcga aaaccagcat atggccgagc gcgccatgga ctccaacgat caggagcgtg
     3901 agcgcggcat taccattctg gccaagtgca cttcggtgga atggcacggc gtgcgcatca
     3961 acaccgtgga cacgcccggc catgctgact tcggcggcga ggtcgaacgc attctgtcca
     4021 tggtggacgg ggtggtgctg ctggtggatg ccgccgaaag cgtgatgccc cagaccaaat
     4081 tcgtgctcag caaggcgctg aaactgggcc tcaagcccat cgtggtgatc aacaagatcg
     4141 accgccacga cgcccagccc aaggaaacgc tggaatccat cttcgatctg ttcctggcgc
     4201 tggacgccaa tgacgaccag ctcaattttc actacctcta tgcctcgggc cgcaacggct
     4261 gggcggtgaa ggagctggag gacgagcgca agaacctcga ccccctgttc cagctgatcg
     4321 tggaagatgt gccgccgccc aagccctacc agctggcgac cgaggaacat cccttcaaga
     4381 tgctggtgac caccctggaa gccgacaact ttctgggccg cattctcacc ggccgcattg
     4441 aatcgggcat catcaccacc aaccgcaata tcaaggcgct gaatcgcgac ggcgaaatca
     4501 tcgagaagac ccgcgtcacc aagctgctgg ccttccgcgg actggcgcgg gtgccggtgg
     4561 agcgcgccga ggccggcgac atcgtcgcca tcgccggact ggaagaggcc accgtcgccg
     4621 atacgctgtg cgacctgacg gtaaccgatc cgatccccag ccatccgatc gatccgccga
     4681 ccttggcgat gaccatctcg gtcaacgaca gcccctatgc gggccgcgaa ggcgacaagg
     4741 tgcagagccg cgtcatccgc gagcgcctgt tgcgcgaggc cgaaggcaat gtcgcgctga
     4801 aagtacagga aaccggcgac ggcgatttcg aagtggcggg ccgcggcgaa ttgcagctgg
     4861 gcgtgctgat cgaatccatg cgccgcgaag gcttcgagct gtcga
//
LOCUS       DATMDK010000267         2036 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_368331,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000267 DATMDK010000000
VERSION     DATMDK010000267.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2036)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2036)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2036
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_368331"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1347
                     /locus_tag="VNN98_05165"
     CDS             <1..1347
                     /locus_tag="VNN98_05165"
                     /inference="COORDINATES: protein motif:HMM:NF025214.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61518.1"
                     /translation="ALASYDRALPGQPQAFGGAAMAALSLCDWARTAEIGAQMAQRIA
                     EGEVIPPWMLLGYSGDETLQRQCAANVIAARFATLPPPLAGIGYSHDKIRLAYISSDI
                     GYHPVTNQIVQLIESHDRAGFEIIGIGTNQDDGSPQRRRLIAAFDQFYDMHQQAPRAV
                     AEKLRALEVDVLVDLNGHTHGDNFDILCHRPAPVQATWLGYAGTTAAPFLDYVIADRI
                     IAPDAAAYSEKIVYLPNCFFPHDSSRAIGKAPTRTEAGLPQAGFVFCCFNNSFKITAP
                     VFAVWMRLLAAVPGSVLWLKQAGEAAKTNLQQAAQAQGVDPARLVFAAPAALDVHLAR
                     HRLADLFLDTLPYNANATACDALWAGLPVLTLRGTAFAGRVAASLLTAAGLPELIAET
                     AEDYEALALGLARDPARLTVLRDKLAAGHTSAPLFDTPRLARDLEAIYREMLTAGV"
     gene            complement(1330..>2036)
                     /locus_tag="VNN98_05170"
     CDS             complement(1330..>2036)
                     /locus_tag="VNN98_05170"
                     /inference="COORDINATES: protein motif:HMM:NF012264.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HWM61519.1"
                     /translation="AAWNRGAYLVSGAAHCGACHTPKNLFGADKGTALTGASLQGWFA
                     PDLTGDRNAGLGSWSAADIVEYLQTGRNSRSIASGPMAEAVENSTSRMNEDDLKAIAV
                     YLKDLPPGKGNGGGATGVDAQIKAGALAYDISCAACHGRDGKGSALFPPLAGNPVVAQ
                     VRADTLVRIVLAGGKAAATPKAPTGPAMPSLAWRLSDEQVANILTYVRNNWGNQAPAV
                     SAETVGRIRSSLHSGS"
BASE COUNT          331 a          705 c          640 g          360 t
ORIGIN      
        1 gcgctggctt cttacgaccg cgccctgccc ggccagcccc aggcctttgg cggcgcggcg
       61 atggcggcgc tcagtctctg cgactgggcg cgcaccgccg agatcggagc gcagatggcc
      121 cagcgcatcg ctgagggcga agtcatcccg ccctggatgc tgctgggtta tagcggcgat
      181 gagacattgc agcgccaatg cgccgccaat gtcatcgcgg cgcgctttgc gacattgccg
      241 ccgccgctgg ctggcatagg ttacagccat gacaagatcc ggctggccta tatctcctcc
      301 gacatcggct atcatccggt gaccaaccag atcgtgcagc tgatcgaaag ccatgaccgt
      361 gcggggttcg agatcatcgg catcggcacc aaccaggatg acggcagtcc ccagcgccgc
      421 cgcctgatcg ccgcctttga ccagttttac gacatgcatc aacaggcgcc gcgcgccgtt
      481 gcggaaaagc tgcgcgccct ggaagtggac gtgctggtgg atttgaacgg ccatacccat
      541 ggcgacaatt tcgacattct ttgccatcgc cccgcgccgg tgcaggcgac atggctgggc
      601 tatgccggca ccaccgctgc gcccttcctg gattatgtca tcgccgaccg tatcatcgcg
      661 cccgatgcgg ctgcctattc cgaaaagatc gtctatctgc cgaactgttt tttcccgcac
      721 gacagcagcc gggcgattgg caaggcgccg acgcgaacgg aagcggggtt gccgcaggcc
      781 ggctttgtct tctgctgctt caacaacagc ttcaagatca ccgcaccggt attcgccgtc
      841 tggatgcggt tgctggcagc cgtccccggc agcgtgctgt ggctgaagca agctggcgag
      901 gcggccaaaa ccaacttgca acaagcagcg caggcgcagg gcgttgatcc cgcgcgcctg
      961 gtcttcgccg ctcccgcagc cctggacgtg catctcgcgc gccatcggct ggcagacctg
     1021 ttcctcgata ccctgcccta caacgccaat gccactgcct gcgacgcgct atgggccggc
     1081 ttgccggtgc tgaccttaag gggcacggcc ttcgccggac gggtggcggc aagcctgctg
     1141 acggccgcgg gactgcccga actgatcgcc gaaacggcgg aagactatga ggcgctggcc
     1201 ttaggcctgg cgcgcgatcc cgcgcgtctt accgtcttgc gcgacaagct cgcggccggt
     1261 cacaccagcg cgccgctgtt cgacaccccg cgcctggcgc gcgacctgga agccatctat
     1321 cgcgagatgc taactgccgg agtgtagtga gctgcgtatc cggccgaccg tctctgccga
     1381 taccgccggc gcctgattgc cccaattgtt gcggacatag gtgagaatat tggccacctg
     1441 ctcgtcgcta agccgccatg cgaggctggg catggccggg ccggtgggcg ccttgggggt
     1501 cgccgccgcc ttgccgcctg ccagcacgat ccgcaccagc gtatcggccc tgacctgcgc
     1561 taccaccgga ttgcccgcaa gcggcggaaa cagcgcgcta cccttgccat cgcggccgtg
     1621 gcaggcagcg cagctgatgt catacgccaa cgcaccggcc ttgatctgcg catccacccc
     1681 ggtggcgccg ccgccattgc ctttgcccgg cggcaggtct ttcagataga cggcaatggc
     1741 cttgaggtcg tcctcgttca tccgggaagt ggaattctcc actgcttcgg ccatcggacc
     1801 ggaggcgatg gaccggctgt tccgcccggt ctgcagatat tccacaatgt cggcggcgct
     1861 ccacgacccc aggcccgcat tgcgatcgcc ggtcaggtcg ggcgcgaacc agccttgcag
     1921 cgaggcgccg gtcaaagccg tgcccttgtc ggcgccgaac aggttcttgg gcgtatggca
     1981 ggcgccgcaa tgcgccgcgc cgctcaccag ataggcgccc cggttccatg ccgcgc
//
LOCUS       DATMDK010000268         3102 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2185544,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000268 DATMDK010000000
VERSION     DATMDK010000268.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3102)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3102)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3102
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2185544"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..461)
                     /locus_tag="VNN98_05175"
     CDS             complement(<1..461)
                     /locus_tag="VNN98_05175"
                     /inference="COORDINATES: protein motif:HMM:NF024900.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2Fe-2S iron-sulfur cluster-binding protein"
                     /protein_id="HWM61520.1"
                     /translation="MPTRKLIVDGKEIEADESITLLQACELAGAEIPRFCYHERLSVA
                     GNCRMCLVEWVGAPKPQASCALQVKDIFPNKDGTPAKINTTSPYARKAREGVMEFLLI
                     NHPLDCPICDQGGECDLQDQAMGYGRAAFHRFNENKRAVEDKYMGPLVKTI"
     gene            complement(461..895)
                     /locus_tag="VNN98_05180"
     CDS             complement(461..895)
                     /locus_tag="VNN98_05180"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61521.1"
                     /translation="MTGFWVTFLEWFASISALVAVALTLAQMHGNRSHHAALHYIGQC
                     DVALREPQFSDPELGKLDLRDHTFNGEKTEFERYEWYVARLVYSLDAAMRMAPFQQWG
                     AVAETQLANHKQYFASDYYAKQDYLKHYSGRMRRLIQQQRAA"
     gene            complement(895..1359)
                     /locus_tag="VNN98_05185"
     CDS             complement(895..1359)
                     /locus_tag="VNN98_05185"
                     /inference="COORDINATES: protein motif:HMM:NF023123.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3291 domain-containing protein"
                     /protein_id="HWM61522.1"
                     /translation="MQLAQVNIGRVLGGTDDPRMADFYNNLARVNALAERMPGFVWRL
                     KDESGDSAMALHWPGDPAMSVNMSVWENDDALGKFVFQTVHRNIYARKHEFFETLKAL
                     TVALWWIEDGHIPTLEEAKERLDHLIAHGPSTFAFSWADLPSAKLWQEKRCG"
     gene            complement(1364..2641)
                     /gene="nuoF"
                     /locus_tag="VNN98_05190"
     CDS             complement(1364..2641)
                     /gene="nuoF"
                     /locus_tag="VNN98_05190"
                     /inference="COORDINATES: protein motif:HMM:NF010120.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA];
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoF"
                     /protein_id="HWM61523.1"
                     /translation="MLSDKDRIFTNLYGFQDPGLEAAKKRGQWDNTKAILALGPEGIV
                     DIMKKSGLRGRGGAGFPTGLKWSFMPKEVKERPHYLVVNADESEPGTCKDRDIMRNDP
                     HTLVEGCLVASFAMRASACYIYVRGEFIREREALQRAVDEAYAAKLIGKNNIHGWDFD
                     LYVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVAP
                     TILRRGADWFAAIGRPNNTGTKVFCISGHVNKPCNVEEEMGIPLRELIDKHCGGVRGG
                     WDNLLAVIPGGASVPLLPKSICDEVLMDFDSLKAVQSGLGTAAVIVMDKSTDVIRAIQ
                     RLAYFYKHESCGQCTPCREGTGWMWRVMTRMVRGDAKVSEIDLLQEVSKEIEGHTICA
                     LGDAAAWPIQGLIRHFRPEIEKRIADFTKMAAE"
     gene            complement(2641..>3102)
                     /locus_tag="VNN98_05195"
     CDS             complement(2641..>3102)
                     /locus_tag="VNN98_05195"
                     /inference="COORDINATES: protein motif:HMM:NF013426.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase subunit E"
                     /protein_id="HWM61524.1"
                     /translation="ATFYTMFNLEPVGIYLVQVCTTTPCWLRGSEAVVAACKKHIHPH
                     EKTVSADGKFSWMEVECLGACVNAPMLQIGSDFYEDIDGPITEQMIADLRAGKSLKPG
                     PQNSRISSEPEGGATTLIDPALFDGSIIGKYKVAAPAPAEAPKPKPPGAAS"
BASE COUNT          556 a          975 c          935 g          636 t
ORIGIN      
        1 atgatcgtct tgaccagcgg acccatatat ttgtcttcga cggcgcgctt gttctcgttg
       61 aagcggtgga aggcggcgcg gccatagccc atcgcctggt cctgcagatc gcattccccg
      121 ccctggtcgc agatcgggca atccagcgga tggttgatca gcaggaattc catcaccccc
      181 tcgcgcgcct tgcgggcata gggactggtg gtgttgatct tggccggggt gccgtccttg
      241 ttggggaaga tgtccttgac ctgcagcgcg caactggcct gcggcttggg cgcacccacc
      301 cattccacca ggcacatgcg gcaattgccg gccaccgaca ggcgttcgtg atagcagaag
      361 cgcggaattt cggcccccgc cagctcgcag gcctgcagca gcgtgatgga ctcgtccgct
      421 tcgatttcct tgccgtcgac gatcagtttg cgggtgggca tcaggcggct ctctgctgct
      481 ggatcaagcg gcgcatgcgc ccgctatagt gcttcaggta atcttgcttg gcgtaatagt
      541 cggacgcgaa atactgtttg tgattggcca gctgggtctc ggcaacggcg ccccattgct
      601 ggaacggcgc catgcgcatg gcggcatcca gcgaatagac cagccgcgcc acataccatt
      661 catagcgctc gaactcggtc ttctcgccat tgaacgtgtg atcgcgcaag tccagcttgc
      721 ccagttcggg atcggaaaat tgcggttcgc gcagcgccac gtcgcactgg ccgatataat
      781 gcagcgccgc atgatggctg cggttgccgt gcatctgggc cagggtcagc gcaaccgcca
      841 ccagcgcgct gatggaagcg aaccattcca ggaatgtgac ccagaacccc gtcatcagcc
      901 acaccgcttt tcttgccaga gtttcgcgga cggcagatcg gcccagctga aagcgaaggt
      961 gctgggaccg tgggcgatca gatgatcgag ccgttctttc gcttcttcca aggtcggaat
     1021 gtgaccgtct tcaatccacc atagcgcaac agtcagcgcc ttgagcgtct caaagaactc
     1081 atgcttgcgt gcatagatat tgcggtggac ggtttggaag acgaacttgc ccaaggcatc
     1141 gtcattttcc cacaccgaca tgttcacact catggccgga tcgcccggcc agtgcagtgc
     1201 catggcgctg tcgccgctct catccttgag ccgccagaca aagcccggca tgcgttcggc
     1261 caaggcatta acccgcgcaa ggttgttgta aaaatcggcc atacgcggat catccgttcc
     1321 gcccaaaacc cgaccgatat tgacctgcgc cagctgcatc gccctactcc gccgccatct
     1381 tggtgaagtc ggcgatgcgc ttttcgatct ccgggcggaa atggcggatc aggccctgga
     1441 tcggccaggc cgccgcgtcg cccagggcgc agatggtgtg accttcgatc tccttgctga
     1501 cttcctgcag cagatcgatt tccgaaacct tggcgtcgcc cctgaccatg cgggtcatca
     1561 cccgccacat ccaaccggtg ccttcgcggc aaggggtgca ctggccgcag ctttcatgct
     1621 tgtagaaata ggccagccgc tggatcgccc tgatcacgtc ggtggacttg tccatcacga
     1681 tcaccgcggc agtgcccagg cccgactgca cagccttcaa ggaatcgaaa tccatcagca
     1741 cctcgtcgca gatgctcttg ggcagcagcg gcaccgaagc accgccgggg atgacggcca
     1801 gcagattgtc ccagccgccg cgtacgccgc cgcaatgctt gtcgatcagc tcgcgcaggg
     1861 gaatgcccat ttcctcttcg acattgcagg gcttgttcac atggccggaa atgcagaaca
     1921 ccttggtgcc ggtattgttg ggacggccga tggcggcgaa ccagtcggcg ccgcggcgca
     1981 ggatggtggg cgccaccgcg atgctttcga cattgttgac ggtggtgggg cagccataga
     2041 gcccgacatt ggcggggaat ggcggcttca gccgcggctg gcctttcttg ccttccagcg
     2101 attccagcag cgcggtttcc tcgccgcaga tataggcgcc ggcgccgtga tggacataga
     2161 gatcgaaatc ccagccatga atgttgttct tgccgatcag cttggcggca taggcctcgt
     2221 ccaccgcgcg ctgcagcgcc tcgcgctcgc ggatgaactc gccgcgcaca tagatgtagc
     2281 aggcgctggc ccgcatcgcg aagctggcga ccaggcaacc ttcgaccagc gtgtgcgggt
     2341 cgttgcgcat gatatcgcgg tccttgcagg tgcctggctc ggactcgtcg gcattgacca
     2401 ccagataatg cggccgctcc ttcacttctt tcggcatgaa ggaccatttc aagccggtgg
     2461 ggaaacccgc gccgccgcgg ccgcgcaggc ccgacttttt catgatatcg acgatgccct
     2521 cggggcccag cgccaggata gccttggtat tgtcccactg gccacgcttc ttggccgcct
     2581 caagacccgg gtcctggaag ccatagagat tggtgaagat acggtcttta tcggacagca
     2641 tcagctggct gctcccggcg gtttgggttt gggcgcttca gccggggccg gcgcagcgac
     2701 cttgtacttg ccgatgatgg agccgtcgaa cagcgccgga tcgatcaggg tggtcgcccc
     2761 gccttccggc tccgacgaga tgcggctgtt ctgcggtccc ggcttgaggc tttttccggc
     2821 gcgcaggtcg gcgatcattt gttcggtgat cggtccgtca atgtcttcgt agaaatcgct
     2881 gccgatctgc agcatcggcg cgttgacgca ggcgcccaga cattccactt ccatccagga
     2941 aaacttgccg tccgctgata ctgtcttttc atgcggatga atatgcttct tgcacgccgc
     3001 gaccaccgcc tccgacccgc gcagccagca aggtgtggtg gtgcagacct gcaccagata
     3061 gatgccgacc ggctccaggt tgaacatggt gtagaaggtc gc
//
LOCUS       DATMDK010000269         2140 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2185653,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000269 DATMDK010000000
VERSION     DATMDK010000269.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2140)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2140)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2140
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2185653"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..432)
                     /locus_tag="VNN98_05200"
     CDS             complement(<1..432)
                     /locus_tag="VNN98_05200"
                     /EC_number="1.17.7.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005107871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046429 - 4-hydroxy-3-methylbut-2-en-1-yl
                     diphosphate synthase activity [Evidence IEA];
                     GO_process: GO:0016114 - terpenoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin-dependent
                     (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase"
                     /protein_id="HWM61525.1"
                     /translation="MSIRAYRDIHRRKSRQIMVGKVPVGGDAPITVQTMTNTITGDAR
                     ATIEQIRGIVEAGADIVRVSCPDQDATKAMKAITKASAIPVVADIHFHYKRAIEAAVN
                     GAACLRINPGNIGSPQRVREVVQAAKDHGCSMRIGVNAGSLE"
     gene            complement(448..1506)
                     /locus_tag="VNN98_05205"
     CDS             complement(448..1506)
                     /locus_tag="VNN98_05205"
                     /inference="COORDINATES: protein motif:HMM:NF024855.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HWM61526.1"
                     /translation="MTKLTQMSLENDGVGDKDGLNRRRIHLREISGDSESPLESVGQD
                     LRAARLRRGDEIAAVSRALKIRKDHLEALENDRIEDLPGKTYAIGFVRSYARHLGLDS
                     AQFVERYKQDISGRAEEQVREPAPIHQDEGRRLPQGWRLIAGAVGILLVWGAYHLLFS
                     GGDSNQAVPPAPVLNPPKQIARVAPAPAPMAAPVQTATPSPAADAAPPAAATSQQASA
                     TPPPAAGAKTPATALSAGAPPTASLTAQAAVPAVGAGQVYGGLNRNPRVILRARSDTR
                     VTVRGPDNQFLLNRDLKAGDSYQVPDMPGVTMATSNAGAVEMDLDGIALGRAGAPQQV
                     LGRVSLDPQSLADRFNNH"
     gene            complement(1712..>2140)
                     /locus_tag="VNN98_05210"
     CDS             complement(1712..>2140)
                     /locus_tag="VNN98_05210"
                     /inference="COORDINATES: protein motif:HMM:NF014895.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016772 - transferase activity,
                     transferring phosphorus-containing groups [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="putative PEP-binding protein"
                     /protein_id="HWM61527.1"
                     /translation="LAFMLPQLMRSADFVSIGSNDLLSLAFAVDRTNPRVSKRYDNLN
                     PASLTLIRLIVNSAAENSGDLSLCGEMAGRPLDAMALLGLGIRTLSMQPGQIGPIKMM
                     IRSLHLGEVAAFVDRLCNRTDHSLRTRLSAFAAERGIVLK"
BASE COUNT          351 a          659 c          741 g          389 t
ORIGIN      
        1 ttccagcgag ccggcattga cgccgatgcg catcgagcag ccgtgatcct tggcggcctg
       61 caccacttcg cgcacccgtt gcggcgagcc gatattgccc ggattgatgc gcaggcaggc
      121 ggcaccgttc accgccgcct cgatggcgcg cttgtagtgg aaatggatgt cggccacgac
      181 ggggatggcg gaggccttgg tgatggcctt cattgccttg gtggcgtcct ggtccggaca
      241 ggagacgcgc acgatgtcgg cgcccgcctc cacgatgccg cggatctgtt cgatcgtggc
      301 gcgggcgtcg ccggtgatgg tgttggtcat ggtctgcacc gtgatcggcg cgtcgccacc
      361 gaccgggacc ttgccgacca tgatctggcg cgacttgcgc cggtgaatgt cgcgataggc
      421 gcgaatgctc atgcttcgtc ttcgtcctta gtgattgttg aaccggtcgg ccagggactg
      481 gggatcgagg gagacgcggc caagaacttg ttgcggggcg cccgcccggc ccagcgcgat
      541 gccgtcgaga tccatttcca ccgcgccggc attgctggtc gccatggtga cgccgggcat
      601 gtctggcacc tgatagctgt cacccgcctt gaggtcgcga ttgagcagaa actggttatc
      661 cggaccgcgc acggtaacgc gggtatcgct gcgggcccgc aagatcacgc gcggattgcg
      721 gttcaggccg ccatagacct ggccggcgcc cacggcggga accgcggcct gggcggtcag
      781 cgaagcggtg gggggcgcac ccgcggaaag agccgtcgcg ggcgtcttgg caccggcagc
      841 gggcggcggc gtggcggacg cttgctggct ggtagcagcg gctggcggcg cggcatcggc
      901 ggcgggagac ggagtcgcgg tctggaccgg cgctgccatc ggcgcgggcg ctggtgcgac
      961 ccgcgcgatc tgtttgggcg ggttcagcac cggcgcgggc ggtaccgcct gattggaatc
     1021 tccgccggaa aacagcaaat gataggcgcc ccagaccagc aatattccca ccgcgcccgc
     1081 gatcaggcgc cagccctgcg gcagccggcg gccctcatcc tggtggatgg gcgctggttc
     1141 gcgcacctgt tcttcggcgc ggcccgaaat atcctgcttg tagcgttcga cgaactgcgc
     1201 cgaatctagt cccaggtggc gagcatagga gcgcacaaag ccgatcgcat aggtcttgcc
     1261 cggcagatct tctatccggt cgttttccag cgcttccaag tgatccttgc ggattttgag
     1321 cgcccgggag accgcggcga tctcgtcgcc ccggcgcagc cgggcggcgc gcaggtcctg
     1381 gcccacgctt tccagcgggc tctcgctgtc gccggaaatt tcgcgcaagt ggatgcggcg
     1441 gcggttcaag ccgtccttgt ctccaacgcc gtcattttcc agggacatct gtgtgagctt
     1501 ggtcataagt ggccgccact gcgcctaccc caaatccact ggaaatgggg ccaagcgcgg
     1561 ctaaatattt gtggtgccta tcttatccga acaagggcgg gggggacaac cgctgcactg
     1621 caaaaagtgc ggtttccttg aacttctttg attttgtcgc ctcgggaccg gggtttcgtc
     1681 gaaagcttat gctgcccgag gctccgggcc cctatttgag gacgattccc cgctccgccg
     1741 cgaaggccga gagccgggtc cggaggctat ggtcggtccg gttgcacagc cggtcgacaa
     1801 aggccgcgac ctcgcccaga tgcagggagc gaatcatcat tttgatgggg ccgatctggc
     1861 ccggctgcat cgacagggtg cggatgccta gtcccagcag cgccatggcg tccagcgggc
     1921 gcccggccat ctcgccgcac agggaaagat cgccggaatt ctcagccgcg ctgttcacga
     1981 ttaggcggat caaagtgagc gaggcgggat tgagattgtc atagcgtttg gagacccgcg
     2041 gattggtgcg gtccaccgca aaggccagtg acaacaaatc gttggagccg atggagacaa
     2101 aatcggccga gcgcatcagc tggggcagca tgaaggccag
//
LOCUS       DATMDK010000270         4005 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2870408,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000270 DATMDK010000000
VERSION     DATMDK010000270.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 4005)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4005)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4005
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2870408"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1282)
                     /locus_tag="VNN98_05215"
     CDS             complement(<1..1282)
                     /locus_tag="VNN98_05215"
                     /inference="COORDINATES: protein motif:HMM:NF013069.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HWM61528.1"
                     /translation="MSVAQLFIRRRIATTLLALGLGLAGMVAYFLLPVSPYPNIDIPT
                     IAVSANMPGASPETMSSSVATPLERHLGAIAGVTEMTSRSNVNNTQIVLQFDIDRDID
                     GAARDVQAAINAARVDLPAALRSNPTYRKFNPADQPILILAMTSKTLSPGQIYDQASN
                     IIQQKLSQISGVGDVSLNGASLPAIRIELNPRALFKYGIGLEDVRAAVSAANANSPKG
                     DIQQQGQTFQVYANDVAILASDYKTLIVAYRNGSAVRLQDVADVSDGVENVRNLGTFN
                     GKPAILVNITKQPGANVIQVTDNILAQLPALKAALPVSIDLGVLVDTTTSIRNAVHDV
                     EITLILSTVLVILVVFLFLRNFKATLVPTVCVPLSLLGTFGVMYLLGFSLDNFSLMAL
                     IVSTGFVVDNTIVVLENVTRHLENGEDRMTAALRG"
     gene            complement(1279..>4005)
                     /locus_tag="VNN98_05220"
     CDS             complement(1279..>4005)
                     /locus_tag="VNN98_05220"
                     /inference="COORDINATES: protein motif:HMM:NF013069.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HWM61529.1"
                     /translation="NPADAPVITLAVSSTSLPLTTVEDLADNRIAQKISQLPGVGLVS
                     ISGGQRPAVRVQVNLQKVAALGLNIDDLRTTIANNNANAPKGSFDGEMQSYTINANDQ
                     LQDAESYKNIVVAYKNGSPVYLRDVANVLQGSQNTKLSSWAGKSPAVLINVQRQPGAN
                     VIAVVDSIKELLPQIQAGLPASVDVKTLTDRTDTIRASVADVEFELMLAVVLVVLVIY
                     CFLGSLPATFIPSLSVPLSIVGTFAAMFLLGYSLNNLSLMALTISAGFVVDDAIVMIE
                     NITRYIEKGETPYNAAMKGAGEIGFTIVSLTVSLIAVLIPLLFMQEVVGRLFREFAVT
                     LAVTILISAVVSLTLVPMLCAKLLRTHAEDQKRESGIQRRIESYYARLVGEYDRLLIW
                     VLKHQKLTLLVAVGTLVLTVLMYIAIPKGFFPLQDTGFVQAITEAGPTVSFEAMSARQ
                     QQLAAKILQDPDVASLSSFIGVDGTNNTLNSGRLLINLKAKADRDGVSTVMDRLSQDA
                     HSVPGITFYLQPVQDLTIDSVVSRAQYQFVLQAATSASLNQFVPKLLAELNKQKAVRN
                     VSTSYLDKGLSAYLAVDRDTAARFGVTAATIDNALYDSFGQRIISTIFTQSNQYRVIM
                     EADPKLQNSVQSLQDIYLPSSGGGQVPLSAIARIDQRAVPLEVDHLAQFPSASFSFDV
                     SPGYSLGAAVNAIQLAESTAGPPPGIITQFEGSALAFQSALSNEVLLILAAIVTVYIV
                     LGVLYESFIHPVTILSTLPSAGVGALLALIVSGHDLNIVSIIGIILLIGIVKKNAIMM
                     IDFALEAERNEGKSPEEAIHQAALLRFRPILMTTVAALFGALPLMLGSGMGSELRHPL
                     GISIVGGLLVSQLLTLFTTPVIYVYFDRAGRDLREWRARRSHMGDLGPEPAE"
BASE COUNT          788 a         1171 c         1336 g          710 t
ORIGIN      
        1 cccccctgag cgccgcggtc atgcggtctt cgccgttttc caaatggcgg gtgacgttct
       61 ccagcacgac gatggtgttg tccaccacaa agccggtgga aacgatcagc gccatcagcg
      121 aaaaattgtc caggctgaag cccagcagat acatgacgcc gaaagtaccc aggagcgaca
      181 gcggcacgca gacagtaggc accagcgtcg ccttgaaatt gcgcaggaac aggaacacca
      241 ccaggatcac caggacggtc gagaggatca gggtgatctc gacatcgtgt accgcattgc
      301 gaatcgaagt ggtcgtgtcg accagcacgc caagatcgat actgaccggc agcgccgcct
      361 tgagtgccgg cagctgggcc aggatgttgt ccgtcacctg gatgacattg gcgcccggct
      421 gcttggtgat gttgacgagg atggcgggct tgccgttgaa agtacccaga ttgcggacat
      481 tctccacacc gtcggacaca tcggccacgt cttgcagcct gactgccgaa ccgttgcgat
      541 aggcgacgat cagggtcttg tagtcggatg ccagtatggc gacgtcattg gcatagacct
      601 ggaatgtctg gccctgctgc tggatgtcgc ccttggggct gttggcattg gcggcgctga
      661 ccgcggcacg cacgtcttcc aacccgatgc cgtatttgaa caaggcacgc ggattgagtt
      721 cgatgcggat ggcgggcagc gaggcgccgt tgagcgagac atcgcccacc ccggatatct
      781 gcgacagttt ctgctggatg atgttggacg cctggtcgta gatctgcccc ggcgacaggg
      841 ttttggaggt catcgccagg atgaggatcg gctggtccgc gggattgaac ttgcgatagg
      901 tggggttgga gcgcagcgct gccggcaaat cgacccgcgc cgcattgatc gccgcctgca
      961 cgtcgcgcgc cgcgccgtca atgtcgcggt cgatgtcgaa ctgaagcacg atctgggtgt
     1021 tgttgacgtt gctgcgcgag gtcatctcgg tgaccccggc aatggcgccc agatgccgct
     1081 ccagcggcgt ggcaacgctg gacgacatgg tctcggggct ggcgccgggc atattggcgc
     1141 tgaccgcgat ggtgggaata tcgatattgg gatagggcga aaccggcagc aggaaatagg
     1201 cgaccatgcc cgccagcccc agccccagcg ccagcaaggt ggtggcgata cgccggcgga
     1261 tgaagagctg ggcgacgctc attcggctgg ctccggtccg aggtcgccca tatggctgcg
     1321 gcgcgcccgc cattcgcgca aatcgcgccc cgcccggtcg aaatagacgt agatcacggg
     1381 cgtggtgaac agggtgagga gctggctcac cagcaacccg cccacgatgg agatgccaag
     1441 gggatggcgc agctccgaac ccatgcccga gcccagcatc agcggcaggg cgccgaacaa
     1501 ggccgccacc gtggtcatca ggatggggcg gaagcgcagc aaggccgcct ggtggatggc
     1561 ctcctcgggc gacttgcctt cgttgcgctc cgcctccagc gcgaagtcga tcatcatgat
     1621 ggcgttcttc ttgacgatgc cgatcagcag gatgatgccg atgatggaaa cgatgttgag
     1681 gtcatgaccg gaaacgatca gcgccaagag cgcccccacg cccgccgacg gcagggtgga
     1741 caggatggtc accggatgaa tgaagctctc atacagaacc cccagcacga tatagacggt
     1801 gacgatggca gccaggatca gcagcacttc gttggacagc gccgactgga aggccagggc
     1861 cgagccttca aactgggtga tgatgcccgg cggcggtccg gcagtgcttt cggccagttg
     1921 gatggcgttc accgccgcgc ccagcgaata ccccggcgac acgtcgaaag agaaggatgc
     1981 cgaagggaac tgggccagat gatccacttc cagcgggacg gcgcgctggt cgatccgggc
     2041 gatggccgac agcgggacct ggccgccgcc cgaggaagga agataaatgt cctgcagcga
     2101 ctggactgaa ttctgcagct tggggtcggc ctccatgatg acgcgatact ggttggactg
     2161 ggtgaagatg gtggaaatga tgcgctggcc gaaactgtca tacagcgcat tgtcgatggt
     2221 cgcggcggtg acgccaaagc gcgccgcggt gtcgcggtcg accgccagat aggccgacag
     2281 gcccttgtcg agatatgaag tcgagacatt gcggacggcc ttctgcttgt tcaactcggc
     2341 cagcagtttg gggacaaact ggttgagcga agcgctggtc gcagcctgca gcacaaactg
     2401 gtattgggcc ctggaaacca ccgaatcgat ggtcaggtcc tgcactggct ggagatagaa
     2461 ggtgatgccc ggcacactgt gggcgtcctg ggacagccga tccatcacgg tgctgacgcc
     2521 gtcgcggtcg gccttggctt tgagattgat cagcaggcgg ccgctgttga gcgtgttgtt
     2581 ggtgccgtcc accccgatga aagaggacag gctggcgaca tcggggtcct gcagaatctt
     2641 ggccgccagt tgttgctggc gggcggacat ggcctcgaac gagacggtgg ggcccgcttc
     2701 ggtgatggcc tggacgaagc cggtatcctg cagggggaaa aagcccttgg ggatggcgat
     2761 atacatcagc acggtcagca ccagcgtgcc caccgccacc agcaaggtga gcttctggtg
     2821 cttcaggacc cagatcagca gccggtcata ctcgccgacc aggcgtgcat aataactctc
     2881 gatccggcgc tggatgccgc tttcgcgctt ctggtcctcg gcatgggtgc gcagcagctt
     2941 ggcacagagc atcggcacca gggtcagcga caccaccgcc gagatcagga tggtgacggc
     3001 caaggtcacg gcgaattcgc ggaacagccg ccccaccact tcctgcatga acagcagcgg
     3061 gatcagcacc gcgatcagcg acacggtcag cgacacgatg gtgaaaccga tttcacccgc
     3121 gcccttcatg gcggcgttat agggcgtctc gcccttttcg atatagcgtg tgatattctc
     3181 gatcatcacg atggcgtcgt cgaccacgaa gcccgcggaa atggtcagcg ccatcaagga
     3241 caggttgttc agcgaatagc ccagcagaaa catggcggcg aaggtgccga cgatggacag
     3301 cggcaccgac aggctgggaa tgaaggtggc gggcaggctg cccaggaagc agtagatcac
     3361 cagcaccacc agcaccaccg ccagcatcag ttcgaattcc acatcggcca ccgaggcgcg
     3421 gatggtgtcg gtgcggtcgg tcagggtctt gacgtccacc gaggccggca ggcccgcctg
     3481 gatctggggc agcagttcct tgatcgaatc caccaccgcg atcacgttgg cgccgggctg
     3541 gcgctggacg ttgatcagca cggcggggct cttgcccgcc cagctcgaca gcttggtgtt
     3601 ttgcgatccc tgcagcacat tggcgacgtc gcgcagataa accggcgagc cgttcttata
     3661 agccaccacg atgttcttat aggactcggc gtcctgcagc tggtcgttgg cattgatggt
     3721 gtaggactgc atctcgccgt cgaagctgcc tttgggtgca ttggcattgt tgttggcgat
     3781 ggtggtgcgc agatcgtcga tattcaggcc cagcgccgcc actttctgca ggttgacctg
     3841 cacccgcacg gccggccgct ggccgccgga aatgctcacc aggccgacgc cgggcaattg
     3901 cgaaatcttc tgggcgatgc ggttgtcggc caggtcctcg accgtggtga ggggcaggga
     3961 ggtggagctg accgccaagg tgatcaccgg cgcatcggcg ggatt
//
LOCUS       DATMDK010000271         2719 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2414286,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000271 DATMDK010000000
VERSION     DATMDK010000271.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2719)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2719)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2719
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2414286"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1829)
                     /locus_tag="VNN98_05225"
     CDS             complement(<1..1829)
                     /locus_tag="VNN98_05225"
                     /inference="COORDINATES: protein motif:HMM:NF039586.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase dimerization/phospho-acceptor
                     domain-containing protein"
                     /protein_id="HWM61530.1"
                     /translation="MAFGVALLAVLSGCVTYVLLTGMTSITLGQTGLIVLMLINLALV
                     LSLAALIGWRLTRLWATRRSGRAGAKLHVRLVTWFSAIAIVPAILVAIFASVTLNIGM
                     QAWFSSNVRTALDGSVNISRQYVKEQFARIIIDAAEISDGIQLDPSLRDKAGNIQLGS
                     MFAKLEAMTSDRGLAGSFLVDSHGTLLGSSSKLKFNAGLAPASDLADALHGRPVAGAD
                     PRTGLVRALIRLDSLKDAYLLIVRVVDPAAFNYYQRNRGAVSEYHALEQNRWKLQVVF
                     ALLYGMVTLVVLLAAIWSGLWAANRLVRPISGLIDAAGRVSEGDLDAQVRVERDDDEL
                     AGLSLAFNRMTQQLSAQRSDLMAAGRLNEIRRRFTETVLSGVSAGVIGLDGEGRVTII
                     NRAAARLLDAAQEDMEACHYSEAVPELAPLILRAMSEPAGHAGGEVTIKRAGTPRSLS
                     VQVTSERGSTDGFVVTFDDITDLVSAQRTAAWADVARRIAHEIKNPLTPIQLSAERLK
                     RKYSGEIVTDPEVFQQCTDTIVRQVGDIGRMVDEFSSFARMPTPVMRRENAQELLQQA
                     VFLQRAGTPDVRFEVDLPSHPVLVSCDSRQVSQALVNLLKNAI"
     gene            2328..>2719
                     /locus_tag="VNN98_05230"
     CDS             2328..>2719
                     /locus_tag="VNN98_05230"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61531.1"
                     /translation="MKPIFVAAIVVGISCFTGPSIQAANQARHPSSGSYLTLEKEYNT
                     KCMRPYDGDYPFGGGLVEGAFLYSADQSHYFTKLDLLTGECAKAASVPSSMFDPKAIS
                     SKYLVAEDGVSSRYSAYLKSDWSRKGSL"
BASE COUNT          559 a          846 c          824 g          490 t
ORIGIN      
        1 tcgatggcgt tcttgagcag attgaccagc gcctggctca cctggcgtga atcgcaggag
       61 accagcaccg gatgcgaggg caaatccacc tcgaagcgta cgtcgggcgt gccggcccgc
      121 tgcaggaaca ccgcctgttg caacagttcc tgggcattct cccgccgcat caccggcgtt
      181 ggcatgcgcg caaaggacga gaactcgtcc accatgcggc cgatatcgcc gacctggcgc
      241 acgatagtgt cggtgcattg ctggaagact tccggatcgg tgacgatctc gccggaatat
      301 ttgcgcttca gccgttcggc ggaaagctgg atcggggtca gcggattctt gatctcatgg
      361 gcgatgcgcc gcgccacgtc agcccaggcg gcggtacgct gggccgacac aagatcggtg
      421 atgtcatcga acgtaacgac aaagccgtcg gtgctgccgc gctcggacgt gacttgaacg
      481 ctgaggctgc gcggcgtgcc cgcccgcttg atggtgacct cgccgccggc atggcctgcc
      541 ggttcggaca tggcccgcag gatcagcggc gccagttccg gcacagcctc ggaatagtgg
      601 caggcctcca tgtcttcctg cgccgcgtcc agcagccgcg cggcggcgcg gttgatgatg
      661 gtgacgcggc cctccccatc caggccgatc accccggcgc tgacacccga cagcaccgtc
      721 tcggtaaagc ggcggcggat ttcgttgagc cggcccgcgg ccatcagatc gctgcgctga
      781 gcggaaagct gctgggtcat gcggttgaag gccagactca ggcccgccag ttcgtcatcg
      841 tcgcgttcca cccgcacctg ggcgtcgaga tcgccctccg aaacgcgtcc tgcggcatca
      901 atgagtccgg agatcggccg caccagccgg ttggccgccc acaggcccga ccagatggcg
      961 gccagcagca ccaccagggt caccatgccg tagagcagcg cgaagacgac ttgcagcttc
     1021 cagcggttct gctccaaggc gtgatattcg ctcaccgcgc cgcggttgcg ctggtagtaa
     1081 ttgaacgccg ccgggtccac cacccgtacg atcagcagat aggcgtcctt caaggaatcc
     1141 aggcggatca gcgcccgcac caaaccggtg cgcggatcgg cgcccgccac gggacggcca
     1201 tgcaacgcat cggccaggtc cgaggccggc gccagcccgg cgttgaattt gagtttgctg
     1261 gaactgccca gcagagtgcc gtgagaatcc accaggaagg agcctgccag cccgcggtcg
     1321 ctggtcatgg cttccagctt ggcgaacatg gagcccagct gaatgttgcc cgccttgtcg
     1381 cgcagactgg ggtccagctg gatgccgtcg gaaatttcgg cggcgtcgat gatgatgcgg
     1441 gcgaattgtt ctttgacata ttgccgcgaa atgttgaccg acccatccag cgcggtgcgc
     1501 acgttcgacg agaaccaggc ctgcatgccg atattcaagg tcaccgaggc gaagatcgcc
     1561 accaggatgg ctgggacgat ggcgatggcg gagaaccagg tcaccagccg cacatgcagc
     1621 ttggcgccgg cccgccccga gcggcgcgtt gcccacagcc gcgtcagccg ccaaccgatc
     1681 agcgccgcca gcgacaacac caaggccaga ttgatcagca tcagcacgat cagcccggtt
     1741 tggcccagcg tgatcgatgt catgccggtc agcagcacat aggtgacgca gcccgacagc
     1801 accgccagca aggcgacgcc aaaggccaat tgtgagggcc gggatactgc gcgcagactg
     1861 gcgcgccgct ccgggaacgt tgtttggcta accatgtctt ccgttacgac cggccccacc
     1921 ccgaacccgg tctttaagag cgggagtgta gcgatggcac ggactgttgc aagaatgctg
     1981 cgttacaatt ccatcacagg atttttggca aaacccagta aatccctgga attattgatg
     2041 gaacttcaaa aatagttggg tgagaagcgg tccgccgcgc atcaacggtg gcggacaagc
     2101 aagtccagtg acctgcgaga ggtacaaacg cctggagcgt aagcgaaggg ccggtgggtc
     2161 aacttgccct aatccatttc tcagagaaat ccctgcaacg tcggtccgga tacttacggg
     2221 cggggaaacc tactctgaca ccaattcctc tatcagcttt ccaccggtta cagagattta
     2281 cccggtttaa atgatacgcg ctcagaatat tggctcagag ggaagccatg aaacccatct
     2341 tcgtcgcggc aatagtcgtt gggatcagct gcttcaccgg gccatcgatc caagctgcca
     2401 accaagcgcg acatccttct tccggaagct atcttacgct cgaaaaagaa tacaacacca
     2461 agtgcatgcg gccatacgat ggcgactacc cctttggagg tggcctggtc gagggagcgt
     2521 tcttatattc tgcggatcag agtcactatt tcaccaaact ggatctcctc acgggcgaat
     2581 gcgcgaaggc tgcctcagtc ccgtcgagta tgtttgatcc aaaggccatt tccagcaaat
     2641 atctcgtcgc tgaagacggc gtttctagtc gctatagcgc ctatctgaaa agtgattggt
     2701 cccggaaggg gtcgctcaa
//
LOCUS       DATMDK010000272         2283 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1043707,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000272 DATMDK010000000
VERSION     DATMDK010000272.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2283)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2283)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2283
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1043707"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(75..2216)
                     /locus_tag="VNN98_05235"
     CDS             complement(75..2216)
                     /locus_tag="VNN98_05235"
                     /inference="COORDINATES: protein motif:HMM:NF014758.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin cofactor-binding domain-containing
                     protein"
                     /protein_id="HWM61532.1"
                     /translation="MSSAAEQPKISRRNLLQASAAGVAIYGFHLPLAQAAPFAPNAFI
                     RIAGDGQVTLVMPQVEMGQGVYTSIAMIMAEELDADFARLTLEHAPPDEAHYANPAFG
                     VQATGNSNSIRAFWKPLRTAGATARALLVMAAAQQWGVDAASCSTAASQVIHAASGRK
                     LGYGALVARAATLKPPANVPLKDPKNFTLIGKPLKRLDTPDKVTGKAAYGIDAMPPGV
                     KFATLAASPVFGGKIGHVDDSKAKAVAGVRQVVVLDDLVAVVGDTMWAAKKGLAALTV
                     TWNEGTNAVVDSAQIWDDIRRASTQKGAVAKTIGDADKGLGDGDRMEAAYELPFLAHA
                     TMEPLNCTAHVTADSCELWIGTQIMARVQSTVAKTLGLPAEKVTVHQHLLGGGFGRRL
                     EPDMAIKAARIAQHVDGPVKVVYTREEDIQHDMYRPVYRDLLAASLKDGKINGWSHKI
                     TGSAVIARWLPPAFQKGVDGDAVDSAVDMPYAIPNFRVEYVRREPPAVPTGFWRGVGP
                     NNNVFAIESFMDELAHKAGKDPVAFRLAMLEGTPRLKSVVQLAAQRSGWGGALPARTG
                     RGIAAQISFASFIATVCEAEADENGEVKIRRMVSVVDTGIAVNPDTIVAQLQGGLIFG
                     LTAALHGQITIAKGRVQQSNFHDYRMLRINEVPSIEVHVVKSGEAPGGIGETGATAAP
                     PALANALYAATGIRLRRLPVDRDVLAGRKEA"
BASE COUNT          395 a          731 c          739 g          418 t
ORIGIN      
        1 gggtcccagc acgatccaac caaccgcgcc caatacgatg acaccgatga ccagcagcgc
       61 gatcagaaag cgtttcatgc ctctttcctc cccgccagta cgtcgcgatc gaccggcaga
      121 cggcgcaggc ggatgccagt ggcggcatag agtgcgttgg ccaaggcggg cggggcggcg
      181 gtggcgccgg tctcgccgat accgcccggc gcctcgccgc ttttgacgac atgcacctca
      241 atgcttggca cctcgttgat ccgcaacatg cgatagtcat ggaagttgct ctgctgcacc
      301 cggcccttgg cgatagtgat ctggccatgc aaagcggcgg taagaccgaa gatcagtccg
      361 ccctgaagct gggccacgat ggtatcggga ttgacggcga tgccggtatc caccaccgag
      421 accatgcggc ggattttgac ttcgccattt tcatcggctt cggcctcaca gacggtggcg
      481 atgaaactgg caaaggatat ctgagcagcg atgccgcgtc cggtgcgcgc cggcagagcg
      541 ccgccccagc cggatctctg cgccgcaagc tgcaccaccg atttcaggcg cggcgtgccc
      601 tccagcatgg cgagacggaa ggcgacaggg tccttgccgg ccttgtgcgc cagctcgtcc
      661 atgaagcttt cgatggcgaa gacattgttg ttggggccga cgccgcgcca gaagccggtg
      721 ggaacggccg gcggctcgcg ccggacatat tcgacacgga aattgggaat ggcatagggc
      781 atgtccaccg cgctatccac agcatcgccg tcgacgcctt tctggaaagc gggcggcagc
      841 cagcgcgcga taaccgctga gccggtgatc ttatggctcc agccgttgat cttgccgtcc
      901 ttcaggctgg cggcgagcag atcgcgatat accggccggt acatgtcatg ctgaatgtct
      961 tcctcgcggg tgtagacgac cttcaccggg ccatcgacat gctgggcgat gcgcgccgcc
     1021 ttgatcgcca tgtcgggctc caaccggcgg ccgaagccgc cgcccagcag atgctggtgc
     1081 accgtcacct tttctgcggg caggcctaag gttttggcga cggtggattg cacccgcgcc
     1141 atgatctggg tgccgatcca caattcgcag gaatccgccg tgacatgggc ggtgcagttc
     1201 agcggctcca tggtggcatg ggccaggaag ggcagctcat aggccgcttc catcctgtcg
     1261 ccatcgccca ggcctttgtc ggcgtcgccg atggtcttgg cgaccgcgcc cttctgggtg
     1321 ctggcgcggc ggatgtcatc ccatatctgc gcggaatcga cgacggcgtt cgtcccctcg
     1381 ttccaggtga cggtcagtgc cgccaggcct tttttcgcag cccacatggt gtcgccgacc
     1441 acggcgacca gatcgtccaa caccacaacc tggcgcacac cggcaacggc cttggccttg
     1501 ctgtcatcga catgaccgat cttgccgccg aacaccggcg aagccgccag ggtggcgaat
     1561 ttgacccccg gcggcatggc gtcgatgcca taggccgcct tgccggtgac cttgtccggc
     1621 gtgtccaggc gcttcagcgg cttgccgatc agggtgaaat tctttgggtc tttcagcggc
     1681 acattcgcgg gcggtttcaa agtggcggcg cgggccacca gcgcgccata gcccagcttg
     1741 cgcccgctgg cggcgtggat cacctggctg gcggccgtgc tgcaagacgc agcatccacg
     1801 ccccattgct gtgccgccgc catcaccagc agcgcgcgcg cggtggcacc ggcagtgcgc
     1861 agcggcttcc agaaggcacg gatggaattg gaattgcctg tcgcctgcac gccgaaagca
     1921 ggattggcat aatgggcttc gtcaggcggg gcatgctcca aggtcaggcg cgcgaagtcg
     1981 gcatccaact cttccgccat gatcatggcg atggaggtat aaacgccctg gcccatctcc
     2041 acttgcggca tgaccagggt gacttggccg tcgccagcaa tacggatgaa ggcattgggc
     2101 gcgaagggcg ccgcctgggc caagggcagg tgaaaaccat atatcgcgac gccggcagcg
     2161 ctcgcctgca gcagattgcg gcgggagatt ttcggctgtt cggctgcgga cgacatggcg
     2221 tttccttatg cttcgctggc ggctttcttg atcgcggcgc gaatgcgcac ataggtgccg
     2281 cag
//
LOCUS       DATMDK010000273         2097 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1271609,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000273 DATMDK010000000
VERSION     DATMDK010000273.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2097)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2097)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2097
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1271609"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..764)
                     /locus_tag="VNN98_05240"
     CDS             complement(<1..764)
                     /locus_tag="VNN98_05240"
                     /inference="COORDINATES: protein motif:HMM:NF012876.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing protein"
                     /protein_id="HWM61533.1"
                     /translation="MRTKPGLLRTQAFRIVLVYVLLFALSVTALLFFTYWNTRRTLDD
                     QTDQIIEAEITGLDEEYRHFGLPGLVEVVRSRTLHQGQSLYVLSDGLHHYLAGNLNSW
                     PQLSDSSGNMVEFDYERPVDGKLEARRARGRVFALPGDFLLLVAQDVHDRYLTERMFT
                     TTLPWTVLLILVLGTAGGALMSRNMLRRLDTINRTSGEIIAGDLTRRVPLNGSGDEFD
                     ALAENLNRMLDRIERLMRGLREVTDSVAHDLRTPLNR"
     gene            complement(754..1428)
                     /locus_tag="VNN98_05245"
     CDS             complement(754..1428)
                     /locus_tag="VNN98_05245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008828764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HWM61534.1"
                     /translation="MRILVIEDDLEAQRYLVQGLKESGHVVDEAAEGETGLSLALSRP
                     YDVAIIDRMLPKMDGLRVVAEMREHGNSTPVLFLSALSEVDDRVKGLKAGGDDYLTKP
                     YAFVELLARIDALVRRRAPAGVRTRLDVGDLELDLLTRGAKRSGTDIELQPREFRLLE
                     YLMRHAGQVVTRTMLLESVWEYHFDPQTNVIDVHISRLRAKIDKGFEVPLLHTVRGAG
                     YMIRAH"
     gene            complement(1491..>2097)
                     /locus_tag="VNN98_05250"
     CDS             complement(1491..>2097)
                     /locus_tag="VNN98_05250"
                     /inference="COORDINATES: protein motif:HMM:NF024578.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="PDZ domain-containing protein"
                     /protein_id="HWM61535.1"
                     /translation="SSLGIKDNKGAMVAELVPGGPAAKAGFEQGDIVTAIDGQGVGDA
                     TDLTTRVAAVPAGQAAIFSVSRQGKPMQVKVTIGTRPDERVASNAPAKNGMMAPSSAN
                     AAGLGLSSLTPEAKKNFNIAETVITGAVITKVDPDSDAADKGLQPGDVVMRVGNRIVR
                     TPTDFQNGVAEAKKGGRTSVLLLVAHSQGGTGFVAIDIDKT"
BASE COUNT          375 a          685 c          664 g          373 t
ORIGIN      
        1 cggttgagcg gggtgcgcaa atcatgcgcc acgctgtccg tcacctcacg caggccccgc
       61 atcaaccgct cgatgcggtc cagcatgcgg ttgagatttt ccgccagggc gtcgaactcg
      121 tcgcccgaac cgttcagcgg cacccgccgc gtcaaatcgc cggcgatgat ttcgccgctg
      181 gtgcggttga tggtgtccag ccgccgcagc atgttgcggc tcatcagcgc cccgcccgcc
      241 gtacccagca ccagaatcag caacacggtc cagggcaagg tggtggtgaa catgcgctcg
      301 gtcaggtagc ggtcatgcac gtcctgggcg accaggagca ggaagtcgcc gggcagggca
      361 aagacccggc cgcgggcgcg ccgtgcctcc agcttgccgt cgaccgggcg ttcatagtcg
      421 aactcgacca tgttgccgga gctgtcggaa agctgcggcc aggaattcag attgccggcc
      481 agataatggt gtaacccgtc cgacaggacg taaagagact ggccctggtg cagagtgcgg
      541 gaacgcacca cctccaccag ccccggcaag ccgaaatgtc gatactcttc atcaaggccg
      601 gtgatctcgg cttcgataat ctggtcggtc tggtcgtcca gggtgcggcg ggtattccaa
      661 taggtgaaga acagcagcgc cgtcaccgac aaggcgaaca gcagcacata gacaagaacg
      721 atgcgaaacg cctgggtccg taaaaggccg ggcttagtgc gcacggatca tgtagccggc
      781 gccgcgcacg gtgtgcagca gcggcacctc aaatcccttg tcgatcttgg ccctgagccg
      841 gctgatatgc acgtcgatca cattggtctg gggatcgaag tgatattccc acacgctttc
      901 cagcagcatg gtgcgggtca cgacctggcc ggcatggcgc atcagatatt ccagcaggcg
      961 gaattcccgc ggctgcagtt cgatgtcggt gccgctgcgc ttggcgccgc gggtcagcag
     1021 gtccagctcc agatcgccca catccagccg cgtcctcacc ccggcggggg cgcggcggcg
     1081 caccagcgcg tcgatccgcg ccagcagttc gacaaaggcg tatggcttgg tgaggtaatc
     1141 atcgccgccg gccttgagcc ccttcacccg gtcatccact tccgacagag cggacaggaa
     1201 caggaccggc gtggaattgc cgtgctcgcg catttcggcc accaccctga ggccatccat
     1261 cttgggcagc atgcgatcga tgatcgccac gtcataaggg cgtgacagag ccaggctcag
     1321 cccggtttcc ccttcggccg cctcatccac cacatggccg gactctttca ggccctgcac
     1381 caggtaacgc tgcgcttcca gatcgtcttc gattacgaga atccgcattt actctcccga
     1441 taatgctgga aatgaaaaaa gggcgcgggg tttgcccgcg cccgcaaaaa tcacgtcttg
     1501 tcgatatcga tggcgacaaa gccggtgccg ccctggctgt gggcgaccag cagcaatacg
     1561 ctggtgcggc cgcccttctt ggcctcggcc accccgttct ggaaatcggt cggggtgcgc
     1621 acgatacggt tgcccacccg catcaccacg tcgccgggct gcagtccctt gtcggcggca
     1681 tcgctgtcgg gatcgacctt ggtgatcacc gcgccggtga tcacggtctc ggcaatattg
     1741 aagttcttct tggcttccgg cgtcagcgac gacaggccca ggcccgcggc attggcgctg
     1801 gaaggggcca tcatcccgtt cttggcaggc gcgttggacg cgacgcgctc atccgggcgg
     1861 gtgccgatgg tgaccttcac ctgcatcggc ttgccctggc gggagactga gaagatcgcg
     1921 gcctggccgg cgggaacggc ggcgaccctg gtggtcaggt cggtggcgtc gcccacgcct
     1981 tgcccgtcaa tcgcggtgac gatgtcgccc tgctcgaagc cggccttggc ggcaggaccg
     2041 cccggcacca attcggcgac catcgcgccc ttgttgtcct tgatgcccag cgaggag
//
LOCUS       DATMDK010000274         4460 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2649108,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000274 DATMDK010000000
VERSION     DATMDK010000274.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 4460)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4460)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4460
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2649108"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1283
                     /locus_tag="VNN98_05255"
     CDS             <1..1283
                     /locus_tag="VNN98_05255"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HWM61536.1"
                     /translation="SHDRRFLENLSRATVWLDRGKTHRLERGFDAFEAWRDEMLEKEE
                     SERHKLERRIAAEEDWVRYGVSGRRKRNVGRLDRLRGLRTERREQVRALGDVKMDAAE
                     GAGSGTKVIDAKGVAFSYGTREIVHDFSLRIHRGDRIALVGPNGAGKTTLLKLLIGQL
                     APQKGNVKLGQGLLMAQLDQNRAALHPEQSLAAAVTDGSGDTVMVAGKPRHVMNYLQD
                     FLFTPQQARTPVKVLSGGERARLLLAKLFATPSNFLVLDEPTNDLDLETLDLLEEVIA
                     DYPGTALLVSHDRDFLDRVATGIILAEGDGRFSEYAGGYADMLAQRGEVPRAEARKSV
                     TKAPLEKRVRAAAPKMNFADAHALKTLPGKIAAAELSMVELEKNLSDSNLYALDPARF
                     AALSAELAGIRAQKDADEERWLALEMEREALEQD"
     gene            1336..1938
                     /locus_tag="VNN98_05260"
     CDS             1336..1938
                     /locus_tag="VNN98_05260"
                     /inference="COORDINATES: protein motif:HMM:NF014522.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fasciclin domain-containing protein"
                     /protein_id="HWM61537.1"
                     /translation="MKHAAIAGFAAGAAMMIGGALGAVSDSDPKPLADNSSEVMNPMI
                     GGQAMLPDRDIMENIAASPMHSTFVAGLKDSGVAGALKTNGQFTVFAPTNAAFAAAGT
                     QSKSGLGRRVSYLIVPGKYDSQALLRLINEAGGDAKLRTAEGGTLVARMNGPTNIVVM
                     DEKGNSADIAIYDVRDKNGIIHVVDRALEPGGPARQVAAN"
     gene            complement(1939..2439)
                     /locus_tag="VNN98_05265"
     CDS             complement(1939..2439)
                     /locus_tag="VNN98_05265"
                     /inference="COORDINATES: protein motif:HMM:NF025268.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin family protein"
                     /protein_id="HWM61538.1"
                     /translation="MKKLAVIALLIATPALAAAPAPKPSIATLQQLPVVVMQPYNEAA
                     NADTDVAATFARAQKSHKRVLIDLGGNWCGDCIILANFVKLPEMRRFMETHYEEVSVD
                     VGRFNRNLQIPARFGFTKRLEGVPALLIATPDGKLVNGTDVFATADARSMTPQALADY
                     LAKYAN"
     gene            complement(2436..>4460)
                     /locus_tag="VNN98_05270"
     CDS             complement(2436..>4460)
                     /locus_tag="VNN98_05270"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: protein motif:HMM:NF013591.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M3 family metallopeptidase"
                     /protein_id="HWM61539.1"
                     /translation="EDWTAPFGAPPLDRIRPEHFAPAYDRALAEHSAEIAAIAGNPAA
                     PSFDNMVLALEKSGPLLTKVEGVFHNFTSAATDEALQAIEMEMAPRLSAHWSAISMHP
                     VLFARLDELYRKRAGLGLDSESLRVLERYHLDFVRAGAQLQGEGRDRLAAIAQRLAVL
                     GTQFSQNVLGDEEDWSLALNEAQMAGIPASLRDAAAAKAAALKLEAPFAVTLSRSSVE
                     PFLQYAEDRGLREQLYRAWISRGDNANAHDNNAIITEMLALRAERATLLGYENFAAFK
                     LADSMAGTPGKARALLEDVWAPARKRALEERDDLQALIARDGGNFPLAPWDWRYYAEK
                     LRREKYDFDDAQLKPYFQLSNLIEAAFFTAQKLFGLSFRERRDLPVYHPDVRVWEVVL
                     GGTVIGLFYGDYFSRAGKQGGAWMSSFRDQHKLGDKLGGGNENVLPIVTNNSNFSKSD
                     PCLLSFDEAVTLFHEMGHALHGLLSQVRYPRLSGTNVARDFVELPSQLFEHWLEEPEV
                     LTRFARHYQTGESIPKPLLDKLLTARNYGQGFATVEFLASALIDMDFHTLTPGSDPSR
                     AQAQTLARIGMPAEIAPRHAASHFTHVFSGDGYAAGYYAYLWSEVLDADGFKAFQEAH
                     DPFDPATAQRLYKFIYSAGGTRDFATAYRAFRGRDPHIDALLEGRGLAAA"
BASE COUNT          841 a         1357 c         1469 g          793 t
ORIGIN      
        1 tcagccatga ccggcgcttt ctggaaaatc tctcccgcgc cacggtatgg ctggaccgcg
       61 gcaagacgca tcgtttggag cggggctttg acgccttcga agcctggcgc gacgagatgc
      121 tggaaaaaga agagagcgaa cgccacaagc tggaacgccg catcgccgcc gaggaggatt
      181 gggtacgcta tggcgtgtcg gggcggcgca agcgcaatgt cgggcggctt gaccggttgc
      241 ggggactgcg caccgagcgg cgcgagcagg tccgtgccct gggcgatgtg aaaatggacg
      301 cagccgaagg cgcgggcagc ggcaccaagg tgatcgacgc caagggcgtg gcattttctt
      361 acgggacgcg tgagatcgtg catgacttca gtctgcgcat ccatcgcggc gaccgtatcg
      421 ccctggtggg gcccaacggc gcgggcaaga ccaccttgct caaactgctg atcggccagc
      481 tggcgccgca aaagggcaac gtcaagctgg ggcagggcct gctgatggcg caactggacc
      541 agaatcgcgc cgcactgcat cccgaacaat ccctggccgc cgccgtcacc gatggcagcg
      601 gcgacacggt gatggtggca ggcaagccgc gccatgtgat gaattatctg caggatttcc
      661 tgttcacgcc gcaacaggcc cgcacgccgg tcaaggtgct atcgggcggc gaacgggcgc
      721 gtctgctgct ggccaagctg ttcgccacgc cgtcgaactt tctggtgttg gacgaaccca
      781 ccaacgacct ggatctggaa acgctggatc tgctggaaga agtgatcgcc gactatcccg
      841 gcacggcgtt gttggtcagt catgaccgcg atttcctgga tcgggtggca accggcatta
      901 ttctggcgga aggcgacggg cgttttagcg aatatgccgg cggctatgcc gacatgctgg
      961 cgcagcgagg cgaggtgcca cgcgccgagg ctcgcaaatc cgtcacaaaa gcgcccctgg
     1021 aaaagcgggt tcgcgccgct gcgcccaaaa tgaattttgc cgatgcccat gccctgaaaa
     1081 ccctgccggg gaaaattgcg gcggccgagc tttcgatggt ggaactggaa aagaaccttt
     1141 ccgacagcaa cctctatgct ctcgatcccg cccgcttcgc cgccctgtcg gcggaactgg
     1201 ccgggattcg cgcccaaaag gacgccgacg aggagcgctg gctggcgctg gagatggaac
     1261 gcgaggcgct ggaacaggat tgacggttcc gcgttgtgat ctttaaggct gaaggtctct
     1321 caaggatcaa gttccatgaa acacgcagcc atcgccggat ttgccgcagg cgccgccatg
     1381 atgatcggcg gggcgctggg cgcagtctcg gacagcgatc ccaagccgtt ggccgacaac
     1441 agctccgaag tcatgaatcc catgatcggc ggtcaggcca tgctgcccga tcgcgacatt
     1501 atggaaaaca tcgccgcctc gcccatgcac tctacttttg tggcgggttt gaaggattcc
     1561 ggtgttgccg gcgcgctgaa gaccaacgga cagttcaccg tctttgcccc caccaacgcc
     1621 gccttcgccg cggcgggaac gcagtccaaa tccggcttgg ggcggcgcgt gagctatctg
     1681 attgtgccgg gcaaatatga ttcccaggcg ctattgcggt tgatcaacga agcgggcggc
     1741 gatgccaagc tgcgcaccgc cgagggcggt acgttggtgg cgcggatgaa cgggccgacc
     1801 aacatcgtgg tgatggacga aaagggcaac tccgccgata tcgccatcta tgacgtgcgc
     1861 gacaagaacg gcatcatcca tgtcgtggac cgggcgctgg agccgggcgg cccggcgcgc
     1921 caagttgcgg ccaactgatc agttcgcgta tttcgccaga taatccgcca gcgcttgcgg
     1981 cgtcatgctg cgcgcatccg cggtggcgaa aacatcggtg ccattcacca gcttgccgtc
     2041 gggtgtggcg atcagcaagg caggcacccc ttccaacctt ttggtgaaac cgaagcgcgc
     2101 tggtatctgc aggttgcggt tgaagcggcc gacatccacc gagacctctt cataatgtgt
     2161 ttccatgaag cggcgcatct ccggcagctt gacgaagttt gccaggatga tgcagtcgcc
     2221 gcaccagttg ccgcccagat cgatcagcac ccgcttatgt gatttctgcg cccgtgcgaa
     2281 ggtggcggcg acatccgtat cggcattcgc cgcctcgttg taaggctgca tgacaaccac
     2341 cggcagctgc tgcagggtag cgatggaagg ctttggcgcc ggcgccgccg ccagcgccgg
     2401 cgtggcgatc agcaaggcta tgacagcaag ttttttcatg ccgccgccag tccgcgccct
     2461 tccagcaggg cgtcgatatg gggatcacgg ccgcggaagg cgcgataggc ggtggcgaaa
     2521 tcgcgagtgc cgccggcgga atagatgaac ttgtacagcc gttgcgccgt ggcgggatcg
     2581 aagggatcgt gggcttcctg gaacgccttg aagccatcgg cgtccagcac ttccgaccat
     2641 agataggcgt aataacccgc cgcatagccg tcgccgctga acacatgggt gaaatgcgaa
     2701 gcggcatggc ggggtgcgat ctctgccggc atgccgatgc gcgccagggt ttgcgcttgc
     2761 gcgcggctgg gatcgctgcc tggggtgagg gtgtggaagt ccatgtcgat cagggccgaa
     2821 gcgaggaact ccaccgtggc gaagccctgg ccgtaattgc gcgccgtcag cagcttgtcc
     2881 agcaagggtt tgggaatgga ctcgccggtc tggtaatggc gggcaaagcg ggtcagcact
     2941 tcgggctctt ccagccaatg ctcgaacagc tgcgaaggca gctccacgaa atcgcgcgcc
     3001 acattggtgc ccgacaggcg gggatagcgc acctggctga gcaggccgtg cagggcgtgg
     3061 cccatttcat ggaacagggt caccgcctcg tcgaaggaca gcaggcaggg atcgcttttg
     3121 ctgaaattgg aattgttggt gacgattggc aggacatttt catttccccc gcccagttta
     3181 tcgcccagtt tatgctgatc gcggaagctg gacatccagg ccccgccttg cttgccggcg
     3241 cgggaaaaat agtcgccata aaacagcccg atcaccgtgc cgcccagcac cacctcccac
     3301 acccgcacat cgggatgata gaccggcagg tcgcggcgtt cgcgaaagct gaggccgaac
     3361 agcttttgcg ccgtgaagaa ggccgcttcg atcaggttgg aaagctggaa atagggcttc
     3421 aactgcgcgt cgtcgaagtc gtatttctcc cgccgcagct tttcggcgta atagcgccag
     3481 tcccagggcg ccagggggaa attgccgccg tcgcgcgcga tcagcgcctg caagtcatca
     3541 cgctcctcca gcgcgcgctt gcgtgccgga gcccagacat cttccagcag ggcgcgcgcc
     3601 ttgccgggcg tgccggccat ggaatcggcc agcttgaagg cggcgaaatt ctcatagccc
     3661 agcagggtgg cacgctcggc gcgcaaggcc agcatttcgg tgatgatggc gttgttgtca
     3721 tgggcattgg cattgtcgcc gcgcgaaatc caggcgcggt acagctgctc gcgcaagccg
     3781 cgatcttccg catattgcag gaaaggttcg acgctggaac gcgacagggt gacggcgaag
     3841 ggcgcttcca gcttcagggc agccgccttg gctgcggccg cgtcgcgcag ggatgcggga
     3901 atgcccgcca tctgcgcctc gttcagcgcc agactccagt cttcttcgtc gcccagcaca
     3961 ttctggctga actgggtgcc caagaccgcc agacgctggg cgatggccgc cagccggtcg
     4021 cggccttcgc cttgcaattg cgcaccggcg cgcacgaaat ccaggtggta gcgttccagc
     4081 acccgcaagg attccgaatc cagccccagg cccgcacgct tgcggtaaag ctcgtccagc
     4141 cgggcgaaca gcaccggatg catggagatg gcgctccaat gcgccgacag gcgcggcgcc
     4201 atttccatct ctattgcctg cagcgcttca tcggtggcgg cggaggtgaa gttgtggaac
     4261 acgccttcca ccttggtgag cagcggcccg cttttttcca gcgccaggac catattgtcg
     4321 aagctgggcg ctgcgggatt tccggcgatg gcggcgatct cggcactatg ttccgccagg
     4381 gcgcggtcat aggcgggggc gaaatgctcg ggcctgatcc ggtccagcgg cggggccccg
     4441 aagggcgcgg tccagtcttc
//
LOCUS       DATMDK010000275         2021 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1512156,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000275 DATMDK010000000
VERSION     DATMDK010000275.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2021)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2021)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2021
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1512156"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..278)
                     /locus_tag="VNN98_05275"
     CDS             complement(<1..278)
                     /locus_tag="VNN98_05275"
                     /EC_number="2.3.1.9"
                     /inference="COORDINATES: protein motif:HMM:NF012336.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA C-acyltransferase"
                     /protein_id="HWM61540.1"
                     /translation="MSDPVVIVSAVRTPLGRLRGALAAETAPQLGAHVIGAALARGGV
                     APGSIDEVFMGCVLPAGQGQAPARQAARGAGLPDSVGATTVNKVCGSG"
     gene            complement(275..727)
                     /locus_tag="VNN98_05280"
     CDS             complement(275..727)
                     /locus_tag="VNN98_05280"
                     /inference="COORDINATES: protein motif:HMM:NF013224.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC family transcriptional regulator"
                     /protein_id="HWM61541.1"
                     /translation="MDDTDLKILRILQTDSAISMVDLALKVGLSHTPCWRRVKALEES
                     GAIRCRAVLLDPAVMGLGVNVLANIKLKAHDEATLEAFEQAARDRPEIVECFTMGGES
                     DYAVRIVVRSIDDYEHLLKKVLLHFPGVAAVNSHFALKCVKNTTRLPI"
     gene            878..>2021
                     /locus_tag="VNN98_05285"
     CDS             878..>2021
                     /locus_tag="VNN98_05285"
                     /inference="COORDINATES: protein motif:HMM:NF012880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016624 - oxidoreductase activity, acting
                     on the aldehyde or oxo group of donors, disulfide as
                     acceptor [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine pyrophosphate-dependent enzyme"
                     /protein_id="HWM61542.1"
                     /translation="MAEHLTLHIPTPSARPGDTPDFSHLQIPSAGALLRPDPATGARA
                     LREMSEGLIRVLDSDGRAVGAWAPMTEPQRLRDGLRAMLLTRLFEERMFRSHRQGKTS
                     FFMKSTGEEAIGAAQSMVLGPRDMCFPTYRVLSWLMARGYPLIDLVNQIFSNERDPLK
                     GRQLPILYSARAYGFYSLSGNLGSRFGHAVGWAMASAYRNDDSLALAYIGEGSTAEGD
                     FHEALTFASVYHAPVILCITNNQWAISSYAGIAGAEEATFAAKAAGYGLPGLRVDGND
                     FLAVWAATQWAVARARANLGATLIEFFTYRAAGHSTSDDPGRYRPADEAAHWPLGDPI
                     ARLKQHLIALGEWDEARHVQFEAELSEMARSAAKEGEAVGTLGKSKP"
BASE COUNT          340 a          672 c          639 g          370 t
ORIGIN      
        1 atgccggagc cgcagacctt gttcaccgtg gtggcgccca cgctgtcggg caggcccgcg
       61 ccgcgcgccg cctggcgcgc cggggcctgg ccctgtccgg ccggaagcac gcagcccatg
      121 aagacttcgt cgatactgcc gggcgcaacg ccgccgcgcg ccagcgccgc gccgatcaca
      181 tgtgcgccca gctgcggcgc ggtctcagcc gccaatgcgc cgcgcaaacg ccccaagggc
      241 gtgcgcacgg ccgagacgat aacgacggga tcgctcatat cggtaatctt gtggtgttct
      301 tcacgcattt caaggcgaag tgggaattga ccgcggccac gcccggaaaa tgcagcagca
      361 ctttcttcag cagatgctca taatcgtcga tgctgcggac cacgatgcgc acggcataat
      421 cactttcccc gcccatggtg aaacattcca cgatttccgg gcggtcgcgc gccgcctgtt
      481 caaaggcttc caaggtcgct tcgtcgtgcg ccttgagctt gatgttggcc aggacattga
      541 cccccagacc catcacggcc gggtccagca gcacggcgcg gcagcggatg gcgccggatt
      601 cttccagggc tttgacccgg cgccagcaag gggtgtgcga cagcccgacc ttgagggcca
      661 gatcgaccat ggagatggcg ctgtcggttt gcaggattcg caggattttc agatcggtgt
      721 cgtccaaagc aatttcatcc taacaaatcg cctatatcgg gaatactatc atagtaagtc
      781 tcctttcggc gcgaaaaaag caattttgtt cccgccgcac tgtgtcatcc ttttacctaa
      841 ggcgttgaag aagcgtcgtt atggaggttg aggcggcatg gcggagcatc tgaccctgca
      901 tattcccacg ccgtcggcgc gccccggcga cacgcccgat ttcagtcacc tccagatccc
      961 gtccgcgggc gccttgctgc gccccgatcc cgccaccggc gcgcgcgcct tgcgcgaaat
     1021 gtccgagggg ttgatccggg tgctggacag cgacggacgt gcggtcggcg cctgggcgcc
     1081 gatgaccgaa ccgcagcgcc tgcgcgacgg tttgcgcgcc atgctgctga cgcggctgtt
     1141 cgaggagcgg atgttccgtt cgcaccgcca gggcaagacc agcttcttta tgaagtccac
     1201 cggcgaggaa gccatcggcg ccgcccagtc catggtgctg ggcccgcgcg acatgtgctt
     1261 tcccacctat cgggttctgt cctggctgat ggcgcggggc tatccgctga tcgacctggt
     1321 caatcagatt ttctccaatg aacgcgatcc gttgaagggc cgccagctgc ccatccttta
     1381 ttcggcgcgc gcctatggct tttattcgct gtcgggcaat ctgggcagcc gtttcggcca
     1441 tgccgtgggc tgggcgatgg ccagcgctta tcgcaacgac gacagtttgg cgctggccta
     1501 tatcggcgaa ggctccaccg ccgaaggcga tttccacgag gcgctgacct tcgcctcggt
     1561 ctatcacgct cccgtcatcc tctgcatcac caacaatcaa tgggcgatct ccagctatgc
     1621 cggcatcgcc ggggcggagg aggccacctt cgccgccaag gccgccggtt acggcctgcc
     1681 gggcctgcgg gttgacggca acgatttcct ggcggtgtgg gcggcgacgc agtgggcggt
     1741 ggcgcgggcc cgcgccaatc tgggcgccac cctgatcgaa ttcttcacct atcgcgccgc
     1801 cggccattcc accagcgacg atcccggccg ctatcgcccc gccgacgagg cggcgcattg
     1861 gccgctgggc gatcccattg cgcgcctgaa gcagcatctg atcgccctgg gcgaatggga
     1921 cgaggcgcgg catgtccagt tcgaggccga actgtcggag atggcgcgca gcgccgccaa
     1981 ggaaggcgag gcagtgggca ccctgggcaa atccaagccg c
//
LOCUS       DATMDK010000276         2656 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2417075,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000276 DATMDK010000000
VERSION     DATMDK010000276.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2656)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2656)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2656
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2417075"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1592
                     /locus_tag="VNN98_05290"
     CDS             <1..1592
                     /locus_tag="VNN98_05290"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF025025.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HWM61543.1"
                     /translation="IAQSLGYITIGTHVDTLDWMMPSVPQMMKDVEREVDSSNPYERG
                     NIILLHDSGGDRSQTVALLPGLIDTMRAKGYAFVPVSELGGFKRDEVMPHLPFTMSLY
                     ADRAVFLTFSYIAQFLYYCFLGAIVLGVARLFILAGLALWKRAQGAGTPMPGGDTSQA
                     VTVLIPAFNEEKVIVTTIERILSSDYPNMEVLVIDDGSKDHTAYIVRSHFMREKRVGV
                     ISVPNGGKANALNIGLTNAHGEVVVALDADTQFESTTISRLVRWFTDPSIGAVAGNAK
                     VGNRINMITRWQALEYIVAQNLERRALSALDTLTVVPGAVGAWRRDVLRELGGFPADT
                     LAEDQDLTIAIQTQGYRVHFDPSAVAWTEAPATVSGLAKQRFRWAYGTLQCLWKYRRI
                     TFNPDYGELGLVALPQVWLFQILLTTLAPVADLLLVWQLVTEYINYSQHVGTYTGDNL
                     KIVGIYYLVFIVVDVLAAMVGFVMERGEDWRLLWWLPLQRFGYRQIMYYVVVRSLWTA
                     LRGPFVGWGKLERHGTVKARA"
     gene            complement(1589..>2656)
                     /locus_tag="VNN98_05295"
     CDS             complement(1589..>2656)
                     /locus_tag="VNN98_05295"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61544.1"
                     /translation="VIAGRILSLASFLAACGGIALVLRQMGCGVRARLFAVLFFAAML
                     LIASDYVAMDDPQFMGHAVQLAALLLLLRGQTLAAALAFAASLFLKHNLLALPLAAGA
                     WLLWQDRRAGLRFMACGIAALGLGLLLFQLFYGVSLPAVLASPRLVSLANLRFAAAHL
                     WWAALPLAALLALRGPWKGFCFLYAAAALMLGLGFSAGDGVDANGFFDLAIACALILG
                     LALEGTPALAALSALPLPLFLAFNFSDNNFFFTRDFAGQSARDIAFLKSRPGPVLCDQ
                     LSLCLWAGKPAEVDLFNVGEEIKTGARNPAPLAGMIAARYFAVLQLQDLDALGPQIRT
                     AISKHYRSHHSDDNGSFLVPR"
BASE COUNT          525 a          795 c          885 g          451 t
ORIGIN      
        1 agatcgcgca aagcctgggc tatattacca tcggcaccca tgtcgacacg ctggactgga
       61 tgatgccgtc cgtgccgcaa atgatgaagg atgtggagcg ggaggtggac agctccaatc
      121 cgtatgagcg cggcaacatc atcctgctgc acgattcggg cggcgaccgc tcccagaccg
      181 tagcgttgct gccgggcctg atcgatacca tgcgggccaa aggctacgcc tttgtgccgg
      241 tgtcggagct gggcggcttc aagcgcgatg aggtgatgcc gcacctgcct ttcaccatgt
      301 cgctctatgc cgaccgggcg gtgttcctga ccttcagcta tatcgcgcag ttcctgtatt
      361 actgtttcct gggcgccatc gtgctggggg tggcgcggct gttcatcctg gcaggattgg
      421 cgttgtggaa gcgggcccaa ggggcgggga ctccgatgcc gggcggggat acctcgcagg
      481 ccgtgacggt gctgattccg gccttcaacg aagaaaaagt gatcgtcacc accatcgagc
      541 ggattctctc cagcgactat cccaacatgg aagtgctggt gatcgatgac ggctccaagg
      601 accataccgc ctatatcgtg cgctcgcatt tcatgcgcga gaagcgggtg ggcgtcatct
      661 ccgttcccaa tggcggcaag gccaacgccc tgaatatagg gctgaccaac gcgcatggcg
      721 aagtggtggt ggcgctggac gccgacacgc agtttgaaag caccacgatt tcacggctgg
      781 tgcgctggtt caccgatcct tccatcggcg cggtggcggg caatgccaag gtcggcaatc
      841 gcatcaacat gatcacccgc tggcaggcgc tggaatatat cgtggcgcaa aatctggagc
      901 gtcgcgcctt gtcggcgctg gacaccttga ccgtggtgcc gggcgcggtg ggcgcctggc
      961 ggcgcgacgt gctgcgcgag ctgggcggtt ttcccgccga caccttggcg gaagaccagg
     1021 acctcaccat cgccatccag acccagggct atcgagtgca tttcgatccc tccgctgtcg
     1081 cctggacgga agcgcccgcc accgtcagcg ggctggccaa gcagcgcttc cgctgggctt
     1141 acggcacctt gcaatgcctg tggaagtacc gccgcatcac cttcaacccg gactatggcg
     1201 agttgggatt ggtggcgttg ccgcaggtgt ggctgttcca gatcctgctt accaccctgg
     1261 cgccggtggc cgacctgctg ctggtgtggc agttggtgac cgaatacatc aactattccc
     1321 agcatgtcgg cacttacacc ggcgacaatc tcaagatcgt gggaatctat tatctggtct
     1381 tcatcgtggt ggatgtgctg gcggcgatgg tcggctttgt gatggagcgc ggcgaggatt
     1441 ggcggctgct ctggtggttg ccgctgcagc gctttggtta tcgccagatc atgtattacg
     1501 tggtggtgcg gtcgctgtgg acggcgctgc gcgggccatt cgtcggctgg ggcaagctgg
     1561 agcgccacgg cacggtcaag gcgagagctt aacgcgggac caggaagctg ccgttatcgt
     1621 cgctgtgatg gctgcgatag tgtttcgaga tcgcggtgcg tatctgcggc cccagcgcat
     1681 ccaggtcctg caattgcaac acggcgaagt agcgggccgc gatcatcccg gccagtgggg
     1741 cgggattgcg agcgccggtc ttgatctctt caccgacatt gaacaggtcc acctcggcgg
     1801 gtttgccggc ccacaggcac agcgaaagct ggtcgcacag cacaggaccc ggacgggatt
     1861 tgagaaaggc gatgtcgcgc gccgactggc ctgcgaaatc ccgggtgaag aagaaattgt
     1921 tgtcggaaaa gttgaaggcc aggaacagcg gcagcggcag ggctgagagc gcggcaagcg
     1981 cgggcgtccc ctccagcgcc aggcccagta tcaaggcgca agcgatggca agatcaaaaa
     2041 agccgttggc gtccaccccg tcgccggcgg aaaaacccag gcccagcatc agcgcggcgg
     2101 cggcgtatag aaagcagaag cctttccagg gaccgcgcaa ggcaagcagc gccgccagcg
     2161 gcaaggccgc ccaccataga tgcgctgcgg cgaagcggag attggccagg gaaaccaagc
     2221 gcggtgacgc cagcactgcc ggcaggctga cgccgtaaaa cagctggaac agaagcaagc
     2281 caagacccag ggcggcgatg ccgcacgcca taaagcgcaa accggcgcgc cggtcctgcc
     2341 acaacagcca ggcgccggcc gccagcggca aggccagcag attatgcttg agaaacaagc
     2401 tggcggcgaa ggccagcgcc gcggcaagtg tttgtccgcg caacaacagc agcaaggcgg
     2461 caagctgcac ggcatggccc atgaactggg gatcgtccat ggcgacatag tcgctggcga
     2521 tcagcagcat ggcggcgaag aacaggacgg cgaacaggcg cgcccgcaca ccgcaaccca
     2581 tctgcctgag caccagtgcg atgccgccgc acgccgccag gaaagaggcc aaggacaaga
     2641 tgcgtccggc gatgac
//
LOCUS       DATMDK010000277         6446 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2873272,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000277 DATMDK010000000
VERSION     DATMDK010000277.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 6446)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6446)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6446
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2873272"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(255..977)
                     /locus_tag="VNN98_05300"
     CDS             complement(255..977)
                     /locus_tag="VNN98_05300"
                     /inference="COORDINATES: protein motif:HMM:NF024777.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LamG domain-containing protein"
                     /protein_id="HWM61545.1"
                     /translation="MSKCSIAVAALLGVMALSASDSWAQATGAQEQTVWKFNNLSRIG
                     GLTPKVEGAPGLVDSPVGKAVQFNGTDTGLFFPGRPLVGAKTFTIEAIFRPEGGEFQQ
                     RWMHIAETDPKTGLDANPGGTADPNPRFMFEIRVVKDQWYLDAFVNSKAGSKALAFPE
                     KLHPVGPWYAVEQTYDGKTYRSYVNGVLEGEGDVAFTPHGPGHMMVGVRMNHVNYFKG
                     SVAEARFTTRALSPREFLKVPQ"
     gene            1512..2018
                     /locus_tag="VNN98_05305"
     CDS             1512..2018
                     /locus_tag="VNN98_05305"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61546.1"
                     /translation="MVFYRSTPAGQVPSYPESETPTPIKGWVYGKAKITSTGGYEEPN
                     QPSLDFNAYAAGGGKSRDFAFDGHTAAHVIRSGNVKALPPSTSWGHFHENMVEAWVVL
                     EGPLDVLITGEPLVTGEVGDVIQDNNERWHRATCHPNIGSCTRLAMTPRNKEGQVHYF
                     QTDQPPGN"
     gene            2044..3306
                     /locus_tag="VNN98_05310"
     CDS             2044..3306
                     /locus_tag="VNN98_05310"
                     /inference="COORDINATES: protein motif:HMM:NF024771.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mandelate racemase/muconate lactonizing enzyme
                     family protein"
                     /protein_id="HWM61547.1"
                     /translation="MDRRKLLANLGAASCFALPFQAKAAYLTNKVKITDVKVMIVRGP
                     TWDWNLFKIETDAGVHGIGEGYWGPGAKDITLKRFKEQMIGEDPINVVKLYTKLLFLN
                     GGYGATGGLTMHAASGIEITLWDLAGKLLQTPVCNLLGGRFRDKVRFYRTLGPPDANP
                     ADPASWGRQAAEAVAHNPFGFTAFKFQGDSVPTTADPDFKEPGHDRYTNQLTNRDIRR
                     LVDRMDRVRKEIGPDIDMAIECHWKYSVNDVIKYCNAVEHVNPMWVEDATPPENVETM
                     ERVSRATTVPLCTGENLYGLSQFAPLIIRQACAGVHIDIPKSGGLFEAKRISDLADLY
                     GIWTACHNPASAVGTIASAHAAASVRNFRVHELAGGRDQWTFDMVTHEGPFFKDGYFV
                     IQDKPGLGIELNPDVVKAHLAPDETWWG"
     gene            3405..4331
                     /locus_tag="VNN98_05315"
     CDS             3405..4331
                     /locus_tag="VNN98_05315"
                     /inference="COORDINATES: protein motif:HMM:NF015682.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61548.1"
                     /translation="MRKILTAALIGCMGLSVPAVAQVKQSREQMLFYTSEWKGERFPD
                     GRPKVPDDLLKRVVDVSVEDLWDYLRDKGYNAQFDTGFQMLHPGKPFAGRALTAQYMP
                     LRRDMIAAISAEGKREGRVSGNNSWPIAELTIGDMYVADGFGKIVEGTLIGSNLGSGI
                     ATHSHTGFVFDAGIRDAEENRELENMNGLYRAYDPSAWKDMTLTSINAPIRIGRATVL
                     PGDLVLAKQEGVIFIPAYLAEDAVAHAEFINLEDAFNFELNRQGKNGGAFEGGWDAKK
                     YDALVQWINANPSKLKMSRAEFDAILAERRKR"
     gene            4627..4854
                     /locus_tag="VNN98_05320"
     CDS             4627..4854
                     /locus_tag="VNN98_05320"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61549.1"
                     /translation="MRKITAAVLAAGLLISTAASAADGVLPAGKPAGVHQAELLTTPI
                     IIVGVVAGAAAAIAIGSTGSTPTTAVVATAP"
     gene            complement(4904..5191)
                     /locus_tag="VNN98_05325"
     CDS             complement(4904..5191)
                     /locus_tag="VNN98_05325"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61550.1"
                     /translation="MRAWLVILALFFAAPALAAPTCQDRGGDTIRCGTQGAMPVGWTP
                     SAQQLWDRQLSRPPGAGRRELLSAFCVVGLILALIALLPEADGWREEQDDE"
     gene            complement(5201..>6446)
                     /locus_tag="VNN98_05330"
     CDS             complement(5201..>6446)
                     /locus_tag="VNN98_05330"
                     /inference="COORDINATES: protein motif:HMM:NF024753.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="PQQ-binding-like beta-propeller repeat protein"
                     /protein_id="HWM61551.1"
                     /translation="KTGKLIWTFHTIPHPGERNAETWAADAWKTAGGANDWPGMVLDA
                     KRGLLFAATGSAADDFYAGERPGKNLYADSMLALDAQTGKLRWYFQAVHHDEWDNDFA
                     AAPLLVTVTRKGKKIDAVAATNKTGFVYVFDRETGHSLFPIDELPAPPATAPGDTAWP
                     TQPHPRLPPPLSHQMVTADNLTQRTPEANKWAREKFATFNNGPIFTPPAYNQETVSAP
                     GFSGGSEWGGMSFDPKLQYLFANTENVIWTTAVIDRKGPDHGSPGAILPGARSRFTFS
                     GYNKFKDQDGYPATAAPWGHLTAIDLKTGKFAWRIPFGEYPELATKGMTDTGSESYGG
                     GIVTASGLFIIAATDFDRKLHAFDTKTGKLLWDTLLPFSGNATPLTYMAGGKQYVVIA
                     ASGMHDRKGPKGGAFVAYALGE"
BASE COUNT         1225 a         1997 c         2036 g         1188 t
ORIGIN      
        1 ctatttcgcc aagccgccgc tttaaaattc ccctctcccc ttgagggaga ggacgcaaaa
       61 tcttgcattt ggcgaagcgc agcgaagcgc agcgaagcca agtgcttaga ttttgctggt
      121 gaggggtgcg ttcatgcgcc gaacttaccc ctcacctgaa aaatcaatgg gttgagcgtc
      181 gctgcgctcc gctaacccaa tgatttttct tcctctccct caaggggaga gggaagtgat
      241 ggtgaacatt gagcctactg cggcactttc aaaaactctc tgggagacag cgcccttgtg
      301 gtaaagcgcg cttccgccac cgagcccttg aaatagttca catggttcat ccgcaccccc
      361 accatcatat ggccggggcc gtgcggggtg aaagcgacat cgccttcgcc ctccagcaca
      421 ccgttgacgt aagagcgata ggtcttgccg tcgtaagtct gctccaccgc ataccagggt
      481 cccaccggat gcagcttttc cggaaaggcc agggccttgc tgcccgcctt gctgttgacg
      541 aaggcgtcca gataccactg gtccttcacc acccggatct cgaacatgaa gcgcggattg
      601 ggatcggcgg tgccgccggg attggcgtcc agcccggtct tgggatcggt ttcggcgata
      661 tgcatccagc gctgctggaa ctcgccgcct tcgggacgga agatcgcctc gatggtgaag
      721 gtcttggcgc cgaccagggg gcggccggga aagaacaggc cggtgtcggt gccgttgaac
      781 tgcaccgcct tgcccaccgg cgagtccacc agccccggcg cgccttccac ttttggtgtc
      841 agcccgccga tgcgcgacag attgttgaac ttccagaccg tttgttcctg cgcccccgtt
      901 gcctgcgccc aagagtcact ggcggaaagc gccatcacgc ccaaaagcgc ggcgacggca
      961 atgctgcact tgctcataaa atctccccgg cctgttcttg tcttggtccg acgttgacgc
     1021 gtctgccgcg ccgctgcaat ctcccggcaa caaaaaacct cgggttggga gagcgttatg
     1081 aaatcgctga catcaggact gctggcgctg ggtatggttc tggcggcgac gcccgccttg
     1141 gcgcaggccg ccggcgagaa aggcgcggag cggattgtct gggccgctca caagacgccg
     1201 gactcgccct acaccaaacc caatcggccg atctggcata tcgccgacat cctcaaggac
     1261 catcagggca agcaaagctg ggatcagccg gtgctgctga cccgcgatta tgacggccat
     1321 tatgtcagca tggcgccggg cgagaaaacc aaatgcatgt tctatgccga cgaccgggtg
     1381 ttcggctgga tctatagcgg ccaggtcaag atcaccatcg acggccagca gcctttcacc
     1441 gccaccaaag gctatctgtt cgatgtggcg ccgcggcttt cctattgcct ggaaaatact
     1501 ggacggagcc ggtggtattc taccgctcca cgccggcagg gcaggtgccg tcttatcccg
     1561 aaagcgaaac ccctacaccg atcaagggct gggtctatgg caaggccaag atcacgtcga
     1621 ccggcggcta tgaagaaccc aaccagccct ctctggattt caacgcctat gccgccggcg
     1681 gcggcaagag ccgcgacttc gcctttgacg gccacacggc agcccatgtc atccgcagcg
     1741 gcaatgtgaa ggcgctgccg ccatccacca gctggggcca tttccacgag aatatggtgg
     1801 aggcctgggt ggtgctggaa ggtccgctgg acgtgctgat caccggcgag ccgctggtga
     1861 ccggcgaggt gggcgatgtg atccaggaca acaacgaacg ctggcaccgc gccacctgcc
     1921 atcccaatat cggcagctgc acccgcctgg ccatgacccc gcgcaacaag gaaggtcagg
     1981 tgcattactt ccagaccgac cagccgccgg gaaattgagc caagctaatt agaggacttc
     2041 acgatggatc gccgcaaact gctggccaat ctgggcgcgg catcctgctt cgctctgccg
     2101 ttccaggcca aggccgccta tctcaccaac aaggtgaaga tcaccgacgt caaggtgatg
     2161 atcgtgcgcg ggcccacttg ggactggaat ctgttcaaga tcgaaaccga tgccggcgtg
     2221 catggcatcg gcgagggtta ttggggcccg ggcgccaagg acatcaccct caagcgcttc
     2281 aaggagcaga tgatcggcga agacccgatc aatgtggtca agctttacac caaactgctg
     2341 ttcctcaacg gcggctatgg cgccaccggt gggctcacca tgcatgccgc gtcgggcatc
     2401 gagatcacgc tttgggactt ggcgggaaag ctgctgcaga cgccggtgtg caatcttctg
     2461 ggcgggcgct ttcgcgataa ggtgcgcttc tatcgtaccc tggggccgcc ggacgccaat
     2521 cccgccgatc ccgcctcctg gggacggcag gcggccgagg cggtcgccca caatcctttc
     2581 ggcttcaccg ccttcaagtt ccagggcgac tcggtgccga ccaccgccga cccggacttc
     2641 aaggagccgg gacatgaccg ctacaccaat caactaacca acagggacat tcgccggttg
     2701 gtggaccgca tggaccgcgt gcgcaaggag atcggccccg acatcgacat ggcgatcgaa
     2761 tgtcactgga aatattccgt caacgacgtg atcaaatact gcaacgccgt cgagcatgtg
     2821 aatcccatgt gggtggaaga cgccaccccg ccggagaatg tcgagaccat ggagcgggtg
     2881 tcgcgcgcca ccactgtgcc gctctgcacc ggcgagaatc tctatggcct gtcgcagttc
     2941 gcgccactga tcatccgcca ggcctgcgcc ggggtgcata tcgacattcc caagtcgggc
     3001 gggctgttcg aggccaagcg catctccgac ctggccgacc tctatggcat ctggaccgcc
     3061 tgccacaatc cggccagcgc cgtgggcacc atcgcgtcgg cccatgccgc ggcttcggta
     3121 cgcaatttcc gcgtccatga actggcgggc gggcgcgatc aatggacctt tgatatggtc
     3181 acccatgaag ggccgttctt caaggacggg tatttcgtga tccaggacaa gccgggactg
     3241 ggcatcgagc tcaatccgga tgtggtcaag gcgcatcttg cgcctgatga aacttggtgg
     3301 ggttaagaag cggtccgcgt tagcggacga gcaggtccag tggacctgcg agagcgacgt
     3361 acgccgcgag ccaaagcgag cggccgggaa agggagttac gggcatgcgc aagattttaa
     3421 cagcggcttt gatcggctgc atggggctga gtgtgccggc tgtggcgcag gtcaagcaga
     3481 gccgcgagca gatgctgttc tacacgtcgg agtggaaggg cgagcgtttc cccgacggcc
     3541 gccccaaggt gccggacgat cttctcaagc gggtggtgga tgtttcggtc gaagacctgt
     3601 gggactatct gcgcgacaag ggctacaacg cccagttcga caccggcttt cagatgctgc
     3661 atcccggcaa gcccttcgcc gggcgggcgt tgacggcgca atacatgccg ctgcgccgcg
     3721 acatgattgc cgccatttcc gcggagggca agcgcgaggg ccgggtcagc ggcaacaaca
     3781 gctggcccat cgccgaactc accatcggcg acatgtatgt cgccgacggc ttcggcaaga
     3841 tcgtggaagg caccttgatc ggctccaatc tgggctccgg catcgccacc cattcccata
     3901 ccggctttgt gttcgacgcc ggcatccgcg atgcggagga aaaccgcgag ctggagaata
     3961 tgaacggcct gtaccgcgct tatgacccgt ccgcctggaa ggacatgacg ctcacctcca
     4021 tcaacgcccc catccgcatc ggccgcgcca ccgtgctgcc gggcgatctg gtgctggcca
     4081 aacaggaagg cgtgatcttc attccggcct atctggcgga agatgcggtc gcccatgccg
     4141 aattcatcaa cctggaagac gctttcaatt tcgagctgaa ccgccagggc aagaatggcg
     4201 gtgcgttcga aggcggctgg gacgccaaga aatatgacgc cctggtgcaa tggatcaacg
     4261 ccaacccgtc caagctcaag atgagccggg ccgagttcga cgccatcctg gcggaacgca
     4321 ggaagcgcta gcaggtcggg gcgccgtaat agggtgcccg taagagaaaa ccgccgactg
     4381 cgcgtgccat aagcggccag taagcggcca gtgcgttgca acattttagc gcaacgcccc
     4441 gcccgttcct ggccggacgc ggtacaaaga acaagcacat cgcgctttat ttttgggcat
     4501 ttcgcacagg cgctcggcat tgtcacaggt ttgttgaatt tgtcgcaggg atgattgtgc
     4561 aattgcgaat ggaattttcc ggcgcagcgc tatcgtttct cacggattca cctgctggag
     4621 cgatacatgc gaaaaataac cgccgcggtc ctggccgcgg gcctcctgat ttccacagcg
     4681 gcgtcggcgg ccgatggcgt gctgccggcc ggtaagcctg ccggcgtgca tcaggcggag
     4741 ctgctgacca ccccgatcat cattgtgggc gtggtggcgg gggccgccgc cgctatcgcc
     4801 atcggctcga ccggcagcac gccgaccacg gccgtggtgg cgaccgcgcc ctgagccgta
     4861 ccggcttttg caggaaaagg cccggccctt gcgccgggct tttttattcg tcgtcctgtt
     4921 cttcgcgcca gccatcggct tcaggcagca gcgcgatcag cgccaggatc aggcccacca
     4981 cacagaaggc agacagaagt tcgcgcctgc cggcgccggg gggccgcgat agctggcggt
     5041 cccaaagctg ctgggctgag ggcgtccagc ccaccggcat ggcgccttgt gtgccgcacc
     5101 tgatggtgtc gccgccccgg tcctggcagg tgggggctgc caaagccggc gcggcgaaaa
     5161 acagggccag gatcacgagc catgcacgca tggcgggagc ttactccccc agcgcgtaag
     5221 ctacaaaagc gccgcccttg ggtcccttgc gatcgtgcat gccgctggcg gcaatgacca
     5281 catactgctt gccgccggcc atgtaggtca gcggcgtggc gttgcctgaa aaggggagca
     5341 gcgtatccca cagcagcttg ccggtcttgg tgtcgaaggc gtgcagcttg cggtcgaaat
     5401 cggtggccgc gatgataaag agcccgcttg cggtgacgat gccgccgcca tagctctcgc
     5461 tgccggtatc ggtcatgccc ttggtagcca gttcgggata ttcgccgaag ggaatgcgcc
     5521 aggcgaactt gccggtcttg aggtcgatag cggtcagatg cccccagggc gccgctgtgg
     5581 cgggatagcc gtcctggtcc ttgaacttgt tgtagccgga aaatgtgaag cgggaacggg
     5641 cgcccggcag gatcgcgccc ggcgatccat ggtccgggcc tttgcggtcg atcaccgccg
     5701 tggtccagat cacattctcg gtattggcga aaagatattg cagcttggga tcgaaactca
     5761 tgccgcccca ttcgctgccg ccggaaaagc ccggcgccga caccgtctcc tggttatagg
     5821 cgggcggggt gaatatcgga ccgttattaa aggtggcgaa tttctcccgt gcccatttgt
     5881 tggcttccgg ggtgcgctgg gtgaggttgt cggccgtcac catctggtgt gacagcggcg
     5941 ggggcaggcg cggatgcggc tgggtcggcc aggcggtgtc gcccggcgcg gtggcgggcg
     6001 gcgccggcag ttcatcaatg ggaaacaggg aatgcccggt ctcccggtcg aagacataga
     6061 caaagccggt cttgttggtg gcggcaacgg cgtcgatctt tttgcccttg cgggtcaccg
     6121 tcaccagcag cggcgctgcg gcgaagtcat tgtcccattc gtcatgatgc accgcctgaa
     6181 aataccagcg cagcttgccg gtttgggcgt ccagcgccag catgctgtcg gcatagagat
     6241 ttttgcccgg ccgctcgccg gcatagaagt catccgccgc cgatccggtg gcggcgaaca
     6301 gcaagccgcg cttggcgtcc agcaccatgc ccggccagtc attggcgccg ccggccgttt
     6361 tccaggcatc ggcggcccag gtttcggcat tgcgttcgcc gggatgggga atggtgtgga
     6421 aggtccagat cagcttgccg gtcttg
//
LOCUS       DATMDK010000278         3408 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_371224,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000278 DATMDK010000000
VERSION     DATMDK010000278.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3408)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3408)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3408
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_371224"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..723
                     /locus_tag="VNN98_05335"
     CDS             <1..723
                     /locus_tag="VNN98_05335"
                     /inference="COORDINATES: protein motif:HMM:NF025268.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin family protein"
                     /protein_id="HWM61552.1"
                     /translation="ALAVFVSLGLGFALPFLLLGIWPRALAFIPKPGAWMLIFKQFLA
                     FPMYAAAAWLVWVLAQEAGPRGVVLVLAAMIALALAAWLWSVTRNLAVRGRGIGALIA
                     LLVLAAGLYGVSLLRDASAAPAVQSVKAGEAYTAAKLASLRAANRPVFVDATAAWCIT
                     CLVNEEAVLSRPSVKSAFAAKNVAYLVADWTNQNPEITTLLKENGRSGVPLYLYYAPG
                     AATPVILPQILTESGVLGAVGG"
     gene            complement(727..1014)
                     /locus_tag="VNN98_05340"
     CDS             complement(727..1014)
                     /locus_tag="VNN98_05340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007015551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1153 domain-containing protein"
                     /protein_id="HWM61553.1"
                     /translation="MRDTANKNTIHVVGPDGGLLTPSNLPPANIKRWVARRKAEVIAA
                     VHGGLLTMPQACRRYGISTEEFMEWERHYEAEGLEGLRASVRLHDPAHPLH"
     gene            complement(1140..1367)
                     /locus_tag="VNN98_05345"
     CDS             complement(1140..1367)
                     /locus_tag="VNN98_05345"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61554.1"
                     /translation="MTSQKPHEKMPEHHSTDKPSTSKEEKIDDQMADSFPASDPPSFS
                     GGNHIIGAPTGRKSTDPAPKAGEKAKQKDGG"
     gene            complement(1466..1624)
                     /locus_tag="VNN98_05350"
     CDS             complement(1466..1624)
                     /locus_tag="VNN98_05350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013587657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3096 domain-containing protein"
                     /protein_id="HWM61555.1"
                     /translation="MHLDIIMIQPLVALLFGVLILILPRLLNYLIAIYLIFIGLVGLF
                     PHLFTTVT"
     gene            1771..3198
                     /locus_tag="VNN98_05355"
     CDS             1771..3198
                     /locus_tag="VNN98_05355"
                     /inference="COORDINATES: protein motif:HMM:NF012481.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite reductase flavoprotein subunit alpha"
                     /protein_id="HWM61556.1"
                     /translation="MAFGSLFKNAPKTSGKILVAFASQTGAAERIAWLSANALAGRGF
                     VRVAALGALSAAEIADAGTLLVVASTYGAGEAPDSARAFARKQMAQVPALKGLAYTVL
                     ALGDMKYDATFCGFGRAVDRWLASAKAKRLFDLVCVDGDDDVAAMTKWCEQLTRLGAN
                     TPVEALLPGPPQDWLLAERRLLNPGSPGGEAWSIILTPKNPAHLAWTAGDIAEIWPRN
                     SEAAVEEFLARHDLDGGKSFRWRGLWTTLRDILAHSRLPGPHEVEGIALDWLVERLEA
                     YPHREYSIASLPGSGRMELLVRKAVKDDGCLGLGSGWLTHDAVPGGVVKLRLRPNPNF
                     HPPQDGPQILIGAGTGFAGLRAHLLYRQQNKLQDAWLLFGERGQATDLYYRDDLKAWQ
                     ADGTLAKADLVFSRDTAPKKYVQHLVAEQGGEIGRWVRECGASVLVCGGLQMAAEVQD
                     ALIAILGEEKLDQMTQDGLYRRDIY"
BASE COUNT          564 a         1008 c         1136 g          700 t
ORIGIN      
        1 gcgctggcgg tgttcgtgtc cttgggcctg ggcttcgctt tgccatttct gctgctgggc
       61 atctggccgc gcgctttggc tttcatcccc aagccgggcg cctggatgct gatcttcaag
      121 cagttcctcg cctttcccat gtacgccgcc gccgcctggc tggtctgggt gctggcgcaa
      181 gaggcaggtc cccgcggcgt ggtgttggtg ctggcggcga tgatcgccct ggcgctggcg
      241 gcctggctgt ggagcgtgac gcggaatttg gctgtacggg gccgcggcat cggcgcgctg
      301 attgcattgc tggtgttggc cgccggcctc tatggcgtca gcctgttgcg cgacgcctct
      361 gccgcgcccg ctgtgcaatc ggtgaaggcg ggtgaagctt ataccgccgc caaactcgcc
      421 agcctgcgcg ccgcaaatcg tccggtcttc gtggacgcca ccgccgcctg gtgcattacc
      481 tgtctggtca atgaggaagc ggtgctgtcg cgccccagcg tcaaaagcgc cttcgccgcc
      541 aagaacgtgg cctatctggt ggctgactgg accaaccaga atcccgaaat caccacgctg
      601 ctgaaagaga atggccgctc cggcgtgccg ctctatctct attacgcgcc gggcgccgcc
      661 acgcccgtta tcctgccgca gatcctgacc gaaagcggcg tgctgggcgc ggtcggcggc
      721 tgagcgtcag tgcagcggat gcgccggatc gtgcagcctg accgaagcgc gcaggccttc
      781 caggccttcg gcttcgtaat ggcgttccca ctccatgaat tcctcggtgg aaatgccata
      841 gcggcggcag gcttgcggca tggtcaagag cccgccatgg acggcggcga tcacttcggc
      901 cttgcggcgc gcgacccatc ttttgatatt ggcaggtggc aggttcgacg gcgtcagtag
      961 gccgccatcc ggcccgacga catgaatagt gtttttgttt gcggtgtctc tcatcagcgg
     1021 ctcctgtaac cgcccccaag cccggcaaag ctaaaataag cgccttaagg gagagtcaaa
     1081 aaaatgcgga agtttttaat ggaactcccg caccggatcg gcacactatt ttcgccggtt
     1141 cagccgccgt ctttttgttt ggccttttct ccggctttgg gggcggggtc cgtgctcttg
     1201 cggccggtgg gtgcgccgat aatgtgattg ccgcccgaga aagagggcgg gtcgctggcg
     1261 ggaaaggaat ccgccatctg gtcgtcgatt ttttcttcct tggacgtcga tggcttgtcg
     1321 gtgctgtgat gctccggcat tttttcatga ggcttctgac tggtcatgac attgctcctt
     1381 tttcaatggt cgctccggct ctcgccgacg cgctttttag tggtcgctcg tcggtacgct
     1441 gtcgctaccg acctcgccga cgctcctacg tcacggtggt gaagaggtgg ggaaacaggc
     1501 caaccagccc gatgaaaatc aggtagatgg cgatcagata attcagcaat cgcggcagga
     1561 tcagaatcag aacgccgaac agcaacgcga ccagcggctg gatcatgata atatctaggt
     1621 gcatgggctc tttcgtcctt ggtgtccggg agctacaacg cgcgagcgcg ggtcctggcc
     1681 gcatgaaagt tccgccgatg gcgcggtccc cgaaaagccc ttgaaaatca ccggtttgcg
     1741 aaggtggggg gcctgtgtta gtgcgcccgc atggctttcg gttccctgtt caaaaacgct
     1801 cccaagacca gcggcaagat cctggtcgcc ttcgccagcc agaccggcgc ggcggagcga
     1861 atagcctggc tcagcgccaa tgccctggcg ggcagaggtt ttgtgcgcgt cgcggcgctg
     1921 ggggccttaa gcgcagcgga gatcgccgac gccggcaccc tgttggtggt ggccagcacc
     1981 tatggcgcgg gcgaggcgcc ggacagtgca cgcgccttcg cccgcaagca gatggcacag
     2041 gtgccggcgc tgaaggggct ggcctatacc gtgctggcgc tgggcgacat gaagtacgac
     2101 gccacctttt gcggcttcgg ccgcgctgtc gaccgctggc tggcatcagc caaagcgaaa
     2161 cggctgttcg atctggtgtg tgtggacggc gatgacgatg tcgccgccat gaccaaatgg
     2221 tgcgaacagc tgacaaggct gggcgccaat acgccggtgg aagccctgct gccgggaccg
     2281 ccgcaggact ggctgctggc cgaacggcgc ttgctcaatc ccggtagccc cggcggcgag
     2341 gcctggtcca ttatcctgac gccgaagaat cccgcgcatc tggcctggac cgcgggcgac
     2401 atcgccgaga tctggccgcg caacagcgag gcggcggtgg aggaatttct ggcgcggcat
     2461 gacctggacg gcggcaagag ttttcgctgg cgcgggctat ggactacctt gcgcgacatt
     2521 ctcgcccatt cgcgcctgcc gggaccccat gaagtcgaag gcatcgcgct ggactggctg
     2581 gtggagcggc tggaggctta tccccaccgt gaatattcca tcgccagttt gcccggcagc
     2641 ggccgcatgg aactgctggt gcgcaaggcg gtgaaggatg acggttgcct gggcctgggc
     2701 tcgggctggc tgacccacga cgcggtaccg ggcggggtgg tgaaattgcg cctgcggccc
     2761 aatcccaatt ttcacccgcc gcaggatggc ccccagattc tgatcggcgc gggcaccggc
     2821 tttgcgggcc tcagggcgca tctgctctat cgccagcaaa ataagctgca ggatgcttgg
     2881 ctcttgttcg gcgagcgggg gcaggcgacc gatctatatt accgcgatga tctcaaggcg
     2941 tggcaggccg atggcaccct ggcgaaagcc gatctggtat tctcgcgcga cacggcgccc
     3001 aagaaatatg tccagcatct ggtggcagag cagggcggcg agatcgggcg ttgggtgcgc
     3061 gaatgcgggg cctctgtcct ggtgtgcggc gggctgcaga tggcggcgga agtgcaggac
     3121 gcgctgatcg ccatcttggg cgaagaaaag ctcgatcaga tgacgcagga tggcttatac
     3181 cggcgggata tttactagcg cttgtcttgc attgaatcta cgctgacccg gttcttgcga
     3241 aattcgcgcc ggtgattgag gttcgccatg aagatgaatc attccattgg gcgtgcaatt
     3301 atgctgggag gcctcgtcgc cggctcgatc gatataggcg ctgccgcact tattaactgg
     3361 cgttcgcctg ttttcattct tcaagttgta gcggggggtt tgctgggg
//
LOCUS       DATMDK010000279         2979 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_3344556,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000279 DATMDK010000000
VERSION     DATMDK010000279.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2979)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2979)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2979
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3344556"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1789
                     /locus_tag="VNN98_05360"
     CDS             <1..1789
                     /locus_tag="VNN98_05360"
                     /inference="COORDINATES: protein motif:HMM:NF012361.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006418 - tRNA aminoacylation for protein
                     translation [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="class I tRNA ligase family protein"
                     /protein_id="HWM61557.1"
                     /translation="KNPDAFSLVQPDGSYAPHVPVFAGKRILTPEGKDGDANGAVIKE
                     LIAHGKLLAKGTLRHSYPHSWRSKAPVIFRATPQWFVAIDKPFLDGKSLRQLALAAIG
                     EIQWYPPRGQNRIGSMVEGRPDWVLSRQRAWGVPLAIFVEKKTGQVLNDKDVFRRIEQ
                     AFEAEGADAWFNSPLSRFLGEGRNPDDYEQVTDILDVWFDSGSTHVFVVEQPIDANWP
                     KAERADLYLEGSDQHRGWFQSSLLESVGTRGQAPYHGVLTHGFVLDKEGRKMSKSLGN
                     TLAPQVIAEKNGAEILRLWAASSDFTEDLRIGDDIIKANVEAYRRLRNTIRFMLSNLS
                     GFSEKERIEYSKMPELERFMLARLAELDATVRKAYENFDFGLVNSTLFNFCTNDLSAF
                     YFDIRKDALYCDPLGSARRRSVRTVTDEIFRRIVTWYAPILCFTMEEAWTTRFGMEQS
                     VHLQDFFPAPQEWTNAGLVKKWSRIRELRRVVTGVMEIARADKTIGASLEAAPILCLT
                     DPTDKALFEGVDLAEIAITSDAKIEMVSEISGLYFIPDVKNAGARFAKAEGAKCARCW
                     RVLEETRSDTQLCDRCTDAVAAPKEKVPA"
     gene            1786..2322
                     /gene="lspA"
                     /locus_tag="VNN98_05365"
     CDS             1786..2322
                     /gene="lspA"
                     /locus_tag="VNN98_05365"
                     /EC_number="3.4.23.36"
                     /inference="COORDINATES: protein motif:HMM:TIGR00077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0004190 - aspartic-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase II"
                     /protein_id="HWM61558.1"
                     /translation="MISSADKGFQPREVGLIAAALALIVDQGSKLYMLYGAGFAHMPP
                     GGAVPVLPFFNLVMVWNPGISYGLFPASGLGTALLIGLSVVAVVVLSWLLWRSTSWAL
                     AIGYGLIIGGALGNNLVDRLVYGKVADFFHFYGFGYDWYVFNIADLAITLGAIAIIYD
                     VLKPEHPQQVSPDSGHEV"
     gene            2324..2857
                     /locus_tag="VNN98_05370"
     CDS             2324..2857
                     /locus_tag="VNN98_05370"
                     /inference="COORDINATES: protein motif:HMM:NF022679.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3035 domain-containing protein"
                     /protein_id="HWM61559.1"
                     /translation="MRLLKAGLAIGFCVVALAGCQSLRDAAGLAKKSPDEFAVTTKAP
                     LVIPPDFNLRPPMPGAPPANTLDPSSNAEAALFSTADPQTVANGMRGNYTPGEKLLLA
                     NAKVQNSDPGIRARLNADQRAAIQNADRSFTDRILSTSATPDNGKPVNADAEIAKGKK
                     ATTTPKKEESGGWFDWF"
BASE COUNT          556 a          939 c          912 g          572 t
ORIGIN      
        1 gaaaaatccc gacgctttca gcctggtgca gccggacggc agttatgccc cgcacgtgcc
       61 ggtgttcgcc ggcaagcgca ttctcacccc cgaaggcaag gacggcgacg ccaatggcgc
      121 ggtgatcaaa gaactgatcg cccatggcaa gctgctggcc aagggcaccc tgcgccattc
      181 ctatccccat agctggcggt ccaaggcacc ggtgatcttc cgcgccacgc cgcaatggtt
      241 cgtggcgatc gacaagcctt tcctggatgg caagagtttg cgccaactgg ccctggccgc
      301 catcggcgaa atccaatggt atccgccgcg cggccagaac cgcatcggtt cgatggtcga
      361 gggccgcccc gactgggtac tgtcgcgcca gcgcgcctgg ggcgtgccct tggcgatctt
      421 tgtcgagaag aagaccggcc aagtgctgaa cgacaaggat gtgttccgcc gcattgagca
      481 agcctttgaa gccgaaggtg ccgatgcctg gttcaactcg ccgctgtcgc gctttttggg
      541 cgagggccgc aacccggatg actacgaaca agtcaccgac atcctggatg tctggttcga
      601 ttccggctcg acccatgtct ttgtggtgga acagcctatt gacgcgaact ggcccaaggc
      661 ggaacgcgcc gatctttatc tggaaggctc cgaccagcat cgcggctggt tccagtcctc
      721 tttgttggaa agcgtcggca cgcgggggca ggcgccctat catggcgtcc tgactcacgg
      781 cttcgtcctg gacaaggagg gccgcaagat gtccaagagc ctgggcaaca ccctggcccc
      841 gcaagtgatc gcagaaaaga acggcgcgga gattttgcgc ctgtgggcgg cctcgtcgga
      901 cttcaccgag gacctgcgca tcggcgacga catcatcaag gccaatgtcg aggcctatcg
      961 ccgcctgcgc aataccatcc gcttcatgct gtccaatctg tcgggtttca gcgagaagga
     1021 acgtatcgaa tattccaaga tgccggagtt ggagcgtttc atgctggcgc ggctggccga
     1081 gctcgatgcc accgtgcgca aggcttatga gaatttcgat ttcgggctgg tcaattccac
     1141 tttgttcaat ttctgcacca acgacctgtc ggccttttat ttcgacatcc gcaaggatgc
     1201 gctctattgc gatccgctgg gcagtgcgcg ccgccgcagc gtccgcaccg tcaccgacga
     1261 aatcttccgc cgcatcgtca cctggtacgc gcccatcctc tgcttcacca tggaggaagc
     1321 ctggaccacg cgcttcggca tggaacagag cgtgcatctg caagactttt tccccgcgcc
     1381 ccaggaatgg accaatgccg gcctggtcaa gaaatggtcg cgcatccgcg agctgcgccg
     1441 cgtggtgacc ggcgtgatgg aaatagcgcg tgccgataag acgattggcg cgagcctgga
     1501 agctgctccg atcctttgcc tgaccgaccc gaccgacaag gccctgtttg aaggcgttga
     1561 cttggcggag atcgccatca cctctgacgc caaaatcgag atggtttcgg aaatttccgg
     1621 tctttatttt atcccggatg tgaaaaatgc cggggcaaga tttgccaagg ctgaaggcgc
     1681 caaatgcgcc cgctgctggc gggtgctgga agagacccgc tccgacaccc aattgtgcga
     1741 ccgttgcacc gatgccgtag cggcgcccaa agagaaagtg ccggcatgat ctcctccgct
     1801 gacaaggggt tccagccgcg cgaagtcggg ctgatcgcgg ccgccctggc gctgatcgtc
     1861 gatcagggca gcaagctgta catgctctat ggcgcgggtt ttgcgcatat gccccccggg
     1921 ggggcggtgc cggtgttgcc gttttttaac ctggtgatgg tgtggaaccc cggcatttcc
     1981 tatggcctgt ttccggcctc cgggctggga accgccctgc tgatcggcct gtccgtggtg
     2041 gcggtggtgg ttttgagttg gcttttgtgg cgttccacca gctgggccct ggccatcggc
     2101 tatgggctga ttatcggcgg ggcgctgggt aacaacctgg tggaccggct ggtctacggc
     2161 aaggtggcgg attttttcca cttttacggc ttcggctatg actggtatgt ctttaatata
     2221 gccgatctgg cgatcaccct gggggccata gccatcatct atgatgtgct gaagcccgaa
     2281 catccccagc aggtatcgcc ggattccggc catgaggttt gaaatgagac tgttgaaagc
     2341 aggtttggcg atcgggtttt gcgtggtggc gctggcgggt tgccaatcgc tgcgcgacgc
     2401 ggcgggcctg gccaagaaat cgcctgacga attcgccgtc accaccaagg cgccgctggt
     2461 cattccgccc gacttcaacc tgcgcccgcc catgcccggg gcgccgcccg ccaacaccct
     2521 ggatccctcc agcaacgcgg aagccgcgct gttcagcacc gccgatcccc agaccgtggc
     2581 caacggcatg cgcggcaact acacgccggg cgaaaaactg ctgctggcca atgccaaggt
     2641 gcagaacagc gatccgggta tccgcgcccg gctgaatgct gatcagcgcg ccgcgatcca
     2701 gaacgccgac cgcagcttca ccgaccgcat cctgagcacc agcgccacgc ccgataacgg
     2761 caagccggtc aatgccgatg ccgaaatcgc caagggcaag aaggcaacga ccacccccaa
     2821 gaaagaagag agcggcggct ggtttgactg gttctaggtt cgccgctgcc tgcaccgtct
     2881 cgctgatcgc cggcctgtcc ctggcgacgg cgcctcgcgc catcgcgccc gcggcggcgc
     2941 aaaccaaagc cgccaaccgg gccaagctgt cccagcccg
//
LOCUS       DATMDK010000280         2150 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1733200,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000280 DATMDK010000000
VERSION     DATMDK010000280.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2150)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2150)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2150
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1733200"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            531..1376
                     /locus_tag="VNN98_05375"
     CDS             531..1376
                     /locus_tag="VNN98_05375"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61560.1"
                     /translation="MDTAWNFRREHLPLSQRSHYVITNGGDQPNIVPDTAAVWYYFRD
                     HDFASVKDLYNTGNEIAESAAKATGTTVTHELLGTAASMNGNRPLAEAAYENIKAVGM
                     PKWTQDDQAFAKAVQVNNHLKQQPLMDTVMPLMTPTSGASAAGGASDDVGDITWTVPT
                     AMVLFPSNVPNATMHNVLAAMAMATPIAHKGVMVGAKAVAMTALDLVTTPELVASAKD
                     YFNNVQTKDQKYVSMLSPDDQPAIHRNDELMARMRPKMEPFYYDAKKYPSYLDQLGVK
                     YPSDK"
     gene            1689..>2150
                     /locus_tag="VNN98_05380"
     CDS             1689..>2150
                     /locus_tag="VNN98_05380"
                     /inference="COORDINATES: protein motif:HMM:NF019339.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HWM61561.1"
                     /translation="MKLYFAAAAALALLASAPSQAASVMSAGGTVQEDCFRAATSQAQ
                     TGRAIANGIAACNVALTGDMSQLARAGTLVNRGILQAAAGRNDAAIADFDAGLARDPN
                     LAAGYMNRGAALLRAARYDRARADFDRAIDLDTADLHIAYFNRGEAQEASGN"
BASE COUNT          422 a          695 c          652 g          381 t
ORIGIN      
        1 tatctcaccg gcatccttga gaagaacggt ttcaagatca cgcgcggcat cgcgggcatt
       61 cccaccgcct ggaccgcgag ttggggcgag ggcgggccgc tgatcgccat gggcagcgac
      121 gaggatgatc tgcgcggcct gtcccaggtg cccggctcgc ccaccatcaa gccgctggta
      181 gcgggcgcgc ccgggcatgg cgaaggccat aattcaggcg ttccgctgat gatcacggcc
      241 gccatcgccg ccaaggcggt gatggaaaaa aaccatctca agggccggct gatggtctgg
      301 cccggtatcg ccgaggagct tctgggcggc aaggccttct atgtccgcgc cggcgtgttc
      361 aacggcgtcg atgtctgcct ctatgctcat atcggcggcc cgatgttcgg caccatgtgg
      421 ggtgtcggcg gcaacggcat ggtctcggtg gaatatacct tccacggcaa gaccgctcat
      481 gccgccgcgg acccgtggga cgggcgcagc gcgctggatg cggtgagatc atggatacgg
      541 cgtggaattt ccgccgcgag catctgccgc tgtcacaacg ctcccattac gtcatcacca
      601 atggcggcga tcagcccaat atcgtgccgg ataccgccgc ggtctggtat tatttccgcg
      661 atcacgattt tgcttccgtc aaggacctct acaataccgg caatgagatc gctgagtccg
      721 cggccaaggc aaccggcacc accgtaaccc atgaactgct gggcaccgcc gcatcgatga
      781 acggcaaccg gccgctggcc gaagcggcct acgagaatat caaggccgtc ggcatgccca
      841 aatggacgca agacgaccag gccttcgcca aggccgtgca ggtcaacaac catctgaagc
      901 agcagccgtt gatggacacg gtcatgccgc tgatgacgcc gacgagcggc gccagtgcgg
      961 cgggcggcgc ctccgacgat gtcggtgaca tcacctggac cgtgcccacc gccatggtgc
     1021 tgttcccgtc caatgtgccc aacgccacca tgcacaatgt actggcggcg atggcgatgg
     1081 ccacgccgat tgcccataag ggcgttatgg tgggggccaa ggccgtggcg atgacggcgc
     1141 tggacctggt aaccacgccc gaactggtgg ccagcgccaa ggattatttc aacaacgtcc
     1201 agaccaagga ccagaaatac gtctcgatgc tgtcaccgga cgaccagccg gccatccacc
     1261 gcaatgacga gctgatggcc cggatgcggc ccaagatgga gccgttctat tacgacgcca
     1321 agaaataccc cagctatctc gaccagctgg gcgtcaaata tccgtcggat aaatagcctg
     1381 cctaatagaa gaccagtgtc cacatccagg catcaaccgc cgcatcgcgc cattgcgtct
     1441 ctacccaact ttttgacatt tccgcgatgg gcacacggcg cgcttttgcg catgcgcatt
     1501 tgcgcggcac aaaaacgccg gcgcatggcg ctgtctgatt agtgtttgga cacgcttaaa
     1561 cccgcgccat atctatcttt tttcctctca ggacgtgttt tacgccttcg cgcaccggcg
     1621 cgcagtgata gattctcgaa cagagggatc gcgattgaaa cgacggtccg ccatcaggag
     1681 agtgaaacat gaaactgtat tttgccgctg ccgcggccct cgcattgctt gcgtccgccc
     1741 cctcccaggc cgcttcggtc atgtcggcgg gcggcaccgt ccaggaagat tgtttccgcg
     1801 ccgccacgtc gcaggcgcaa accggccgcg ccatcgccaa cggcatagcg gcctgcaatg
     1861 tggcgctgac cggcgacatg tcgcagctgg cgcgtgccgg caccttggtc aatcgcggca
     1921 tcctccaggc cgcggccgga aggaacgatg cggcaatcgc cgacttcgat gccggtctgg
     1981 cacgcgaccc gaacctggct gccggttata tgaaccgcgg ggcggccctg ttgcgtgccg
     2041 cgcgctatga ccgggcccgg gccgatttcg atcgcgccat agacctggac acggcggacc
     2101 tgcacatcgc ctatttcaat cgcggcgagg cgcaggaagc atcaggcaat
//
LOCUS       DATMDK010000281         2691 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_3345152,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000281 DATMDK010000000
VERSION     DATMDK010000281.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2691)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2691)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2691
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3345152"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1216
                     /locus_tag="VNN98_05385"
     CDS             <1..1216
                     /locus_tag="VNN98_05385"
                     /inference="COORDINATES: protein motif:HMM:NF013100.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008658 - penicillin binding [Evidence
                     IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="penicillin-binding protein 2"
                     /protein_id="HWM61562.1"
                     /translation="GLEFEPGGKRYYPDGRNAAQIVGVTDPDNNGVSGLELGLQDHIR
                     SAAGGKVATSIDMRVQYILAHEVETARQTFSARAAGGVVMDVNTGEVLAMVSSPDFDP
                     NQRRQSEGDSSRNIMAQDVYELGSVFKIFSFTLALEDRTLRSLDEVFQIGQGYKVGKY
                     TIHEAEHMPATLLGRDVLAQSSNIGTAQIALRSGPGRQRAFLTTMGLLKPVKTDLPET
                     ARPLYPAANWGQIETATVGFGQGISVSPLSFVAAAASVVNGGRKVTPTFLKQSASDLR
                     GEQLIKPETSLQMRDLLRYVVTDGSGKKADVPGYDIGGKTGSAQVAGPHGRYIPHALR
                     TSFCGVFPVHNPRYLVFILLDQPHGTKETGGFALAGWTAAPAVGRVIQRIAPLLGVPS
                     NAPPTKLASGGT"
     gene            1282..>2691
                     /locus_tag="VNN98_05390"
     CDS             1282..>2691
                     /locus_tag="VNN98_05390"
                     /EC_number="6.3.2.13"
                     /inference="COORDINATES: protein motif:HMM:NF001124.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016881 - acid-amino acid ligase activity
                     [Evidence IEA];
                     GO_process: GO:0008360 - regulation of cell shape
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
                     6-diaminopimelate ligase"
                     /protein_id="HWM61563.1"
                     /translation="MLGMKDFTGLTSDSRKVKPGYLFAALAGSKTDGALFLKDAVSRG
                     AVAVLGDPAIANDVAALGVRFIPDENPRAGLARYAAAFFAGQPDIVAAVTGTKGKSSI
                     VAFLREIWTALGKPAASLGTVGVIGPGGATPLAHTTPDPVEIHELLAKLKQEGVDHLA
                     IEASSHGLDQHRLDGVKVSGCGFTNITRDHMDYHATFDDYLAAKLRLFTQVVKDGGVA
                     VVNADAAHAERFIEAARMRGLVLITVGRKGETIQLDRREDQGGAQALTLRHAGKIHHL
                     VLPLAGDFQTSNALVAAGLAIGLGGSPDKVFAALEHLKGAPGRMEKVAFAKSGAPIYV
                     DYAHTPDSLDKMLAALRPHTAGKLHVVFGCGGDRDRGKRPLMGAIAVKLADDVIVTDD
                     NPRSEDAAAIRGEILAAAPGAREIGDRAEAIRAAVAALGTGDVLILAGKGHETGQYIN
                     GEVLPFSDREQAIAAALLLG"
BASE COUNT          479 a          877 c          866 g          469 t
ORIGIN      
        1 ggggctggag ttcgagcccg gcggtaagcg ctactatccc gacggccgca atgcggcgca
       61 gatcgtgggc gtcaccgatc ccgacaataa tggtgtttcc ggccttgagc tgggcctgca
      121 ggatcatatc cgcagcgccg cgggcggcaa agtcgccacc tccatcgaca tgcgggtgca
      181 gtatatcctg gcgcatgaag tggagacagc gcgccagacc ttctcggcgc gcgccgccgg
      241 cggcgtggtg atggacgtca atactggcga agtgctggcg atggtatcgt cgcccgactt
      301 cgatcccaat cagcgccgcc agtccgaggg cgactccagc cgcaacatca tggctcagga
      361 cgtctacgaa ctgggctcgg tattcaagat cttcagcttc accctggcgc tcgaggaccg
      421 cacgctgcgc agcctggatg aggtcttcca gattggccaa ggctacaagg tcggcaaata
      481 caccatccat gaagccgagc acatgcccgc gaccttgctg ggacgcgatg tgctggcgca
      541 atcctccaac atcggcacgg cgcagatcgc gctgcgttcc ggtcccggcc gccagcgcgc
      601 ctttctcacc accatgggcc tgttgaagcc ggtgaagacc gatctgccgg aaaccgcacg
      661 cccgctttat cccgccgcca attggggcca gatcgaaacc gccaccgtag gcttcggcca
      721 gggtatttcg gtatcgccgc tcagtttcgt cgccgccgct gcctcggtgg tgaatggcgg
      781 ccgcaaggtc actcccacct tcctcaagca atcggccagc gacctgcgcg gcgagcagct
      841 gatcaagccg gaaacctcgc tgcagatgcg cgacctgctg cgctatgtcg tgaccgacgg
      901 ctcgggcaag aaggccgatg ttccaggtta cgatataggc ggcaagactg gttcagccca
      961 ggtggcgggc ccccatggcc gttatattcc ccatgccctg cgtacgagct tctgcggcgt
     1021 cttcccggtg cacaatccgc gctatctcgt attcatcctg ctcgatcagc cgcatggcac
     1081 caaggagacc ggcggcttcg ctctggccgg ctggaccgcc gctcccgccg tgggccgggt
     1141 gatccagcgc atcgcgccgt tgctgggcgt gcccagcaat gctccgccca ccaaattggc
     1201 atcgggcggc acctaatgac gccacattcc gaatccacga tgggcgcttc ttcccttgag
     1261 aataaggcga gaaacgccac catgttgggt atgaaggact tcacgggact gaccagcgac
     1321 agccgcaagg tcaagccggg ctatctgttc gctgccctgg caggcagcaa aaccgacggc
     1381 gcactttttt taaaagatgc ggtatcgagg ggagccgtgg cggtgctggg cgacccggcg
     1441 atcgccaatg acgtggcggc gctgggcgtg cgcttcattc ccgacgaaaa cccgcgcgcc
     1501 ggcctggcgc gttatgccgc cgccttcttt gccggccagc ctgacatcgt cgctgccgtc
     1561 accggcacca aaggcaaatc ctccatcgtc gccttcctgc gcgaaatctg gacggcgctg
     1621 ggcaagcccg ccgccagctt ggggaccgtg ggcgtgatcg ggcccggcgg cgcgacgccg
     1681 ctggcgcaca ccacgcccga cccggtggag attcacgaac tgctggcgaa gttgaagcag
     1741 gaaggcgtgg atcatctcgc catcgaagcc tccagccacg ggctggacca gcaccggctg
     1801 gacggggtga aagtttcggg ttgtggcttc accaatatca cccgcgacca tatggattat
     1861 cacgccacct ttgatgacta tctcgccgcc aagctgcggc tgttcacgca ggtggtgaaa
     1921 gacggcggcg tggcggtggt caatgctgac gcggcgcatg ccgaacgttt catcgaagcg
     1981 gcccggatgc gcggcctggt tctgatcacg gtgggccgca agggcgagac cattcagctg
     2041 gatcgccgcg aggatcaggg tggcgcccag gcgttgacct tgcgccatgc cggaaaaatc
     2101 catcatctgg tgttaccgct ggccggcgac ttccagacct cgaatgccct ggtcgcggcc
     2161 ggtctggcca tcgggcttgg cgggagccct gacaaggtct tcgcggctct ggaacatttg
     2221 aaaggtgcgc ccggccgtat ggagaaggtc gccttcgcca aatcgggcgc gcccatctat
     2281 gtcgattacg cccacacccc ggactcgctg gacaagatgc tggccgcgct gcggccgcac
     2341 accgccggaa agctgcatgt ggtattcggc tgcggcggtg accgcgacag gggcaagcgc
     2401 ccgctgatgg gcgccatcgc ggtcaagctg gccgacgatg tgattgtcac cgacgacaat
     2461 ccccgcagcg aagatgcggc ggcgatccgc ggtgagattc tagccgccgc gccaggggcg
     2521 cgcgagatcg gtgatcgcgc cgaagccatt cgcgccgcgg tggcggcgct gggcacgggc
     2581 gatgtgctga tactcgcggg caagggtcat gagaccggcc agtatatcaa cggtgaagtc
     2641 ctgccctttt cggaccgcga gcaggcgatt gccgccgcac tcctcctggg a
//
LOCUS       DATMDK010000282         3146 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_601705,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000282 DATMDK010000000
VERSION     DATMDK010000282.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3146)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3146)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3146
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_601705"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..228
                     /locus_tag="VNN98_05395"
     CDS             <1..228
                     /locus_tag="VNN98_05395"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61564.1"
                     /translation="NITNIAGNAVVQGSAIGNSFEADSNAPNMPIMSRQLNNSGVVSN
                     VNANMYNVGGSIGLSSSAIGNTSQVIHYNTN"
     gene            562..1206
                     /locus_tag="VNN98_05400"
     CDS             562..1206
                     /locus_tag="VNN98_05400"
                     /EC_number="1.14.11.-"
                     /inference="COORDINATES: protein motif:HMM:NF025024.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008198 - ferrous iron binding [Evidence
                     IEA];
                     GO_function: GO:0016705 - oxidoreductase activity, acting
                     on paired donors, with incorporation or reduction of
                     molecular oxygen [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2OG-Fe(II) oxygenase"
                     /protein_id="HWM61565.1"
                     /translation="MSTLPIDLDAFEAAAVAHEPFAFAMVPHFVRQEAMAAINADYPL
                     VTHPGSFPLPTLQYGPAFKAFIEAIQGAEFTRAVERKLGVNLKGRPTMVTARGQSAAR
                     DGQIHTDSRTKLITVLIYMNNAWEAKTGRLRLLRGPGDLEDVIAEVPPDEGTMLIFKN
                     EPHAWHGFHAFEGPRRVIQLNWVTDMAVVRREQFRHRISAFFKRLAGRKPSGGY"
     gene            1214..1882
                     /locus_tag="VNN98_05405"
     CDS             1214..1882
                     /locus_tag="VNN98_05405"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61566.1"
                     /translation="MRKQIMTVAALLFLSMTASAATPERTVAGNTVVSRHNPAVTIRL
                     PKSAHYVGADRFLLHDPKFGDFDDCELHAFVEADKSGNVRKLYWVQFESYLPDRPELH
                     HTYDSPRHATIGGLDFYVDTWTTPGNSKPDPGSDAEHYYALLGAHGFKRRDMMAVRLV
                     HLTDTTKRKELMIIYREPVPAGYTAAALAKGGVAYAKWPALERGLIARTVSSVTIGPL
                     PGKP"
     gene            complement(1895..2866)
                     /locus_tag="VNN98_05410"
     CDS             complement(1895..2866)
                     /locus_tag="VNN98_05410"
                     /inference="COORDINATES: protein motif:HMM:TIGR00238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lysine-2,3-aminomutase-like protein"
                     /protein_id="HWM61567.1"
                     /translation="MSLEDVARRYAVAVSPTLLSLVDVCDPHDPIARQFLPSLEELNT
                     LPQELADPIGDAAHSPVAGIVHRHPGRVLFKAVSACPVYCRFCFRRETIGPGKENALS
                     KEDFEAALAYIAVHPEIWEVILTGGDPFILSPRRVAEITSRLSAIAHVKVIRWHSRVP
                     VVDPDRVSDALVAALHAPGATTYVAVHANHPREFSPDARVAIARLVDGGVPLVSQSVL
                     LKGVNDNVETLAALMRAFVENRIKPYYLHHPDLAPGTSHFRIGIEEGLALMGDLRALV
                     SGLAMPTYMLDIPGGFGKVPLESAHVEKTATGHRIRDHTGRWHTYRG"
     gene            complement(2863..>3146)
                     /locus_tag="VNN98_05415"
     CDS             complement(2863..>3146)
                     /locus_tag="VNN98_05415"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61568.1"
                     /translation="LFWTGILSVIIGMVMASAFPAIVVYAQELLPGRVGMISGMFFGL
                     SFGLGGIGAAVLGVLADATSIAYVYKVCAFLPAIGLLTVFLPNFKTVKK"
BASE COUNT          632 a          989 c          951 g          574 t
ORIGIN      
        1 aacatcacca acatcgcggg caatgccgtg gtccagggtt cggcgattgg caacagcttc
       61 gaggccgact ccaacgcccc gaacatgcca atcatgtcgc gccagctgaa caattccggc
      121 gtggtctcca acgtcaacgc caacatgtac aacgtcggcg gcagcatcgg cctgtcctcc
      181 agcgcgatcg gcaacacctc gcaggtcatc cattacaaca ccaactaacc ggacggaatt
      241 gctctggaat tcttaggggc aaaataaggg ttccagagta agggacgggc gcgaaggaca
      301 cgcgcccgtc cctatctttt tgttaaaccc ctccggcttt cgctggcccc cggcgcgcgt
      361 cgcgcgcctt ttatatgttt agagggcgcc gcttcgcggc tggccagcta cgttcgtacg
      421 ctggcgctac tcaccctccc cttcctgtgc gctacgcgca cgaaggggag gcaggtcatg
      481 gccttagcgg atgtcgccgc acgaaatgcg cggctcgtgc ctattcttcc ttcaggcttt
      541 aggagatggt atctcccaca catgtccacc cttcccatcg acttggatgc tttcgaggcc
      601 gccgcggtgg cgcacgagcc ctttgccttc gccatggtgc cgcacttcgt ccggcaggag
      661 gcgatggcgg cgatcaatgc cgattatccg ctggtcaccc atcccggttc cttccccttg
      721 ccgaccttgc agtatgggcc ggctttcaag gcctttatcg aggcgattca gggcgcggag
      781 ttcacccggg cggtggaaag aaaactgggc gtgaacctga aaggccggcc caccatggtg
      841 accgcgcgcg gacaatcggc ggcacgcgat ggccagattc ataccgactc gcgcaccaag
      901 ctgatcacgg tgctgatcta tatgaacaac gcatgggagg ccaagaccgg ccgcctgcgc
      961 ctgttgcgcg gccccggcga tctggaagac gtcatcgcgg aagtgccgcc cgacgaaggc
     1021 accatgctga tcttcaagaa tgagccgcat gcctggcacg gctttcacgc ctttgagggt
     1081 ccgcgccggg tgatacagct caactgggtg acggatatgg ccgtggtgcg gcgcgagcag
     1141 tttcgccatc gcatcagcgc ctttttcaag cgactggccg gccgtaagcc gtccggcgga
     1201 tactgaggtt tccatgcgca aacagatcat gactgtcgca gcgctgctgt ttctttcaat
     1261 gaccgccagt gccgccacgc ctgagcggac ggttgctgga aacaccgtgg tgtcccgaca
     1321 taaccctgcc gtcacgattc ggcttcccaa gtcggcgcat tatgtcggcg cggatcgctt
     1381 tttgctccac gaccccaaat tcggcgattt cgacgattgc gagttgcatg ctttcgtcga
     1441 ggcagacaaa agcggaaatg tccgcaagct gtattgggtg cagttcgaaa gctatctgcc
     1501 ggatcgtccg gagctgcacc atacctatga ctcgccgcgg catgccacga ttggcggtct
     1561 ggacttttat gtcgatacct ggacaacgcc aggcaacagc aagccggacc ccggctcgga
     1621 tgcggagcat tattatgcct tgctcggcgc gcatggtttc aagcgccgcg acatgatggc
     1681 ggtccgcctg gtgcatctca cggataccac caagcgcaag gaactgatga tcatctaccg
     1741 cgaacctgta cctgcgggat atacggcggc ggcgctggcg aaaggcggcg tggcctatgc
     1801 caagtggcca gcgcttgaac gcggcctgat cgcacgcacg gtaagcagcg tcacaatcgg
     1861 cccgcttccc ggcaagccct gactgtcgat cgctttatcc tcgatacgtg tgccaacggc
     1921 cggtgtgatc gcggatgcga tggccggtgg cggttttctc cacatgggct gattccagcg
     1981 gcaccttgcc gaagccgccg gggatatcga gcatataggt cggcatcgcc agccccgaca
     2041 caagcgcccg taaatcaccc atcagggcca acccttcttc gatcccgata cggaagtgcg
     2101 aagtgcctgg cgccaggtcg ggatgatgca ggtaataggg cttgatgcgg ttctcgacaa
     2161 aggcgcgcat caaggcggcc agggtctcca cattgtcgtt cacgcctttc agcagtaccg
     2221 actgactgac cagcggcacg ccgccgtcca ccaaccgcgc gatcgcgacg cgagcgtcag
     2281 gcgagaattc gcgcgggtga ttggcatgaa cggcgacata ggtggtggcg cccggcgcat
     2341 gcagcgccgc caccaacgcg tcactgacgc ggtcgggatc gaccaccggc acgcggctat
     2401 gccagcggat cactttgaca tgcgcgatag cggacaggcg gctggtgatt tcggccacgc
     2461 ggcgcgggct gaggatgaaa ggatccccgc cggtcaagat cacttcccag atttcgggat
     2521 ggacggcgat ataggccagc gccgcctcga aatcctcttt cgacagcgca ttttcctttc
     2581 cggggccgat ggtctcgcgg cgaaaacaga aacggcaata gaccgggcag gccgacaccg
     2641 ccttgaacag gacgcgaccg ggatggcgat gcacgatgcc cgccacggga gaatgggctg
     2701 cgtcgccgat cggatcggcc agttcctgcg gcagggtgtt cagttcctcc aggctgggga
     2761 gaaattgccg cgcgatggga tcatggggat cgcacacgtc caccagagac agcagggtgg
     2821 gcgacaccgc cactgcgtag cgccgcgcaa catcttccag actcatttct tgacagtctt
     2881 gaaatttggc agaaacacgg tgagcaatcc gatcgccggc aggaaggcgc agaccttata
     2941 cacgtaagcg atggaggtgg catcggccag cacccccagc accgctgcgc caatgccgcc
     3001 cagcccgaaa gacaggccga agaacatgcc cgaaatcatg cccacccggc cgggcagcag
     3061 ttcctgggca taaaccacga tggccgggaa ggcggacgcc atcaccatgc cgatgatcac
     3121 cgacaggatg ccggtccaga acaggt
//
LOCUS       DATMDK010000283         2497 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_3345595,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000283 DATMDK010000000
VERSION     DATMDK010000283.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2497)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2497)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2497
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3345595"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1366
                     /locus_tag="VNN98_05420"
     CDS             <1..1366
                     /locus_tag="VNN98_05420"
                     /inference="COORDINATES: protein motif:HMM:NF012312.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HWM61569.1"
                     /translation="TLLSLGGFFEFYDLFLAAYVAPGLVKSGILTATTPGLLGTSGVA
                     GFVAAFFLGLFVGTALLGFVADRLGRRVIFMGSLLWYAAASLVMAFQQNAFDLNVWRF
                     ICGIGIGVELVTIDTYIAELAPPAWRGRAFAYANIIQFTAIPLVAFLGWLLVPRTLFG
                     LDGWRFVVMAGSAGALLVWFVRARLPESPRWLAQHGRSAEAEAIVESWEIEARLEEFS
                     PSAFRNASVATGTSPVGPSATGEDSLGSAAVEQGRGSFWEIWQPPYLGRTVMLIAFNL
                     FQAAGYYGFASWVPTLLISSGIEVPKSLGYTFLIALAAPFGPALGLLFTDRIERKWII
                     SGAALAIAAAGLAFTQAHGMAGVIACGVALTLANNILSFAYHGYQPELFPTRIRARAV
                     GFVYSFSRLSTMFSAFVIAAILKSFGAPGVFVFIAGCMGIVAAVIGIFGPRTKDLPLE
                     AISQ"
     gene            1363..1536
                     /locus_tag="VNN98_05425"
     CDS             1363..1536
                     /locus_tag="VNN98_05425"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61570.1"
                     /translation="MSAQKMIGISLMVALAGAFIAWTIREPASNLQMMVSGLLAVAVF
                     AAWRFLVWQPPRK"
     gene            1533..2372
                     /gene="rlmJ"
                     /locus_tag="VNN98_05430"
     CDS             1533..2372
                     /gene="rlmJ"
                     /locus_tag="VNN98_05430"
                     /inference="COORDINATES: protein motif:HMM:NF016278.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008649 - rRNA methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0070475 - rRNA base methylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (adenine(2030)-N(6))-methyltransferase
                     RlmJ"
                     /protein_id="HWM61571.1"
                     /translation="MNYRHGYHAGNFADVVKHVALVAILLHLKKKDAAFAVVDSHAGR
                     GTYDLAGAEAGKTGEAKNGIARLAGLPSDLAGDLPEALLDYLSLVKEGGERAYPGSPL
                     IAAKLLRPQDRLTAIEKNTAEFAALKEALAPFRNAVAEQDDGYVRAIKLLPPPSRRGL
                     VLLDPPFEAPDEFSALAQTVREAWRKFATGIFLVWYPIKSQAAADAFIGEVLAGGMTK
                     AFTIDITIAAPEGKLARAGLLVINPPFGFDGVMCAVAAAIAPRLGAAIRNDWLAGGEI
                     TVR"
BASE COUNT          381 a          770 c          822 g          524 t
ORIGIN      
        1 gaccttgctg tcgctgggcg gcttctttga attctacgat ctgttcctgg cggcctatgt
       61 cgcgccgggg ctggtgaagt cgggcatcct caccgccacc acgccgggcc tgctgggcac
      121 cagcggcgtg gcgggctttg tggcggcgtt tttcctgggc ttgttcgtgg gcaccgcttt
      181 gttgggcttt gtcgccgacc ggctggggcg ccgcgtcatc ttcatgggct cgctcttatg
      241 gtatgccgcc gcttcgctgg tgatggcgtt ccagcagaac gcgttcgacc tgaatgtgtg
      301 gcgcttcatc tgcggcatcg gtatcggggt ggagctggta accatcgaca cttatatcgc
      361 cgagctggcg ccgcccgcct ggcgcggccg cgccttcgcc tatgccaata tcatccagtt
      421 caccgccatt ccgctggtgg cttttctggg ctggctgctg gtgccgcgca ccctgttcgg
      481 gttggacggc tggcgctttg tggtgatggc gggatcggcg ggggcgctgc tggtgtggtt
      541 cgtccgcgcc cgcttgccgg aaagcccgcg ctggctggcg cagcatggcc gctctgccga
      601 ggccgaggcc atcgtggaat cctgggaaat agaagcacgt ttggaagagt tttccccctc
      661 cgcctttcgc aacgcaagcg ttgctacagg cacctccccc gtagggcctt cggccacggg
      721 ggaggacagt cttggatcag cagcggtgga acagggcagg ggctcgttct gggaaatctg
      781 gcagccgccc tatctgggcc gcaccgtgat gctgatcgcc tttaacctgt tccaggcggc
      841 gggctattac ggcttcgcca gctgggtgcc gaccttgttg atctccagcg gcatcgaggt
      901 gcccaaaagt ctgggctata ccttcctcat cgccctggcg gcgccgttcg gaccggcgct
      961 gggcctgctg ttcaccgacc ggatcgagcg caaatggatc atctccggcg cggccctggc
     1021 cattgcggcg gcggggctgg ctttcaccca ggcgcatggc atggctggtg tgatcgcctg
     1081 cggcgtggcg ctgaccttgg ccaacaacat tctctccttc gcctatcacg gctatcagcc
     1141 ggaactgttt cccacccgga tacgggcgcg ggcagtgggc ttcgtctatt ccttctcgcg
     1201 cctttccacc atgttcagcg cttttgtcat cgccgcgatt ctgaaaagct tcggcgcgcc
     1261 gggcgtgttt gttttcattg ccggttgcat ggggatcgtt gcggcagtaa tcggaatctt
     1321 cggaccccgg accaaagacc tgcccctgga ggcaatttcg caatgagcgc tcagaaaatg
     1381 atcggaattt ccttgatggt ggcgctggcg ggcgccttca ttgcctggac cattcgtgag
     1441 ccggcctcca acctgcagat gatggtcagc ggtttgctgg cggttgcggt ctttgcagcc
     1501 tggcgctttc tcgtttggca accgccacgc aaatgaacta ccgccatggc tatcacgccg
     1561 gaaatttcgc cgatgtggtc aagcatgtgg cgctggttgc catcctgctg catctgaaaa
     1621 agaaggacgc ggcattcgcg gtggtggaca gccatgccgg gcgcgggacc tatgatctgg
     1681 cgggagccga agcgggcaag accggcgagg cgaaaaacgg tatcgcgcga ttggcgggtc
     1741 ttccaagcga cttggcgggc gatctgcccg aggcgctttt ggattatctg tcactggtta
     1801 aagaaggcgg cgaacgcgcg tatcccggct cgccgctgat cgccgccaaa ttgctgcggc
     1861 cgcaggaccg gctgaccgcc attgaaaaga atacggcgga attcgccgcc ctgaaagaag
     1921 cgctggcgcc gttccgcaat gccgtggccg aacaggatga cggttacgtc cgcgccatta
     1981 agctgctgcc gccgccatcg cggcgcggac tggtgctgct ggacccgccg tttgaggcgc
     2041 ctgatgaatt ctccgcgctg gcgcaaaccg tgcgcgaagc ctggcgcaaa ttcgccaccg
     2101 ggattttcct ggtctggtac cccatcaagt cgcaggccgc cgccgatgcc ttcatcggcg
     2161 aggtgttggc gggcggtatg accaaggcgt tcaccatcga catcaccata gcggcgcccg
     2221 aaggcaagct ggcccgcgcc gggctgctgg taatcaatcc gccttttggc tttgatggcg
     2281 tcatgtgcgc cgtcgccgcc gccatcgctc cgcggctggg cgccgccatc cgcaacgatt
     2341 ggctggccgg gggcgaaata acggtccggt aacagtgcgg caaccatcaa agcctatcct
     2401 gcgggaccgc aggcggagac gggcatggat tttgggatcg acagtgaaga cgccagggcc
     2461 aatcgcgccg cgctgcgggc ctgcgccacc atggggc
//
LOCUS       DATMDK010000284        11133 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1048910,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000284 DATMDK010000000
VERSION     DATMDK010000284.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 11133)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11133)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11133
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1048910"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(156..1130)
                     /gene="trxB"
                     /locus_tag="VNN98_05435"
     CDS             complement(156..1130)
                     /gene="trxB"
                     /locus_tag="VNN98_05435"
                     /EC_number="1.8.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011347508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004791 - thioredoxin-disulfide reductase
                     (NADP) activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin-disulfide reductase"
                     /protein_id="HWM61572.1"
                     /translation="MTANSPKHSKVIILGSGPAGCTAAIYAARAMLEPTLIAGIQPGG
                     QLTITTEVENYPGFAEAIQGPWLMDQMQEQAAALGTNFVADTIANVDLSRRPFTLLGD
                     SGDVYTADTLIIATGASANWLGLASESQFQGFGVSACATCDGFFFRGKKVAVVGGGNT
                     AVEEALFLTNFADQVTLVHRRDFLRADKTNQARLNANKKIDILYDTEVTEVLGTSQPK
                     GVTGVKLRNTVTGSPHEQSVDGLFVAIGHSPATQLFHGQLEMDESGYIKTAPDSTHTS
                     VAGVFAAGDVKDKIFRQAVTAAGMGCMAALEAERFLAGAHSGDLPLSA"
     gene            1362..1841
                     /locus_tag="VNN98_05440"
     CDS             1362..1841
                     /locus_tag="VNN98_05440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019977129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC family transcriptional regulator"
                     /protein_id="HWM61573.1"
                     /translation="MDTRKLDAIDLRILSELQADGRITNVELSRRAKITAPPCLRRIR
                     ALEKAGFIRGYHAELDGRSLGYEVTGFVFVGLASQKDGDLKHFEESARRWPEVRECHM
                     LSGEVDFILKCVARDLSAFQSFITNTVTAEKNVASVKSSLVIHASKQEPGYPIVVPA"
     gene            1967..2734
                     /locus_tag="VNN98_05445"
     CDS             1967..2734
                     /locus_tag="VNN98_05445"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61574.1"
                     /translation="MTRTTLFLAGAALLASTALVTAAPAVTAKMKTAVADTARPAADT
                     ARDEYRKPAQMLAFAGITPGKVVVDMLPGGGYFTRIFAKAVEPGGRVYAYFGSQYDAR
                     LKTQNKDPDNQFADLKAAYKNLGVIHGPLAQFVTPEPVDVVWTSDNYHDMHTKAYDMD
                     VSAVNKAIYKSLKPGGYYIIVDHKAAESTGDDVSEALHRIKESTTKTEVEAAGFKLVA
                     EGKDMINATDDGTKRVFEADVRGKTSQFMLKFQKPRH"
     gene            2757..3512
                     /locus_tag="VNN98_05450"
     CDS             2757..3512
                     /locus_tag="VNN98_05450"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61575.1"
                     /translation="MRFLFACAAVFTAAQCVTGFCLEVDAQPVTRVKARLTAFDGQVM
                     SLEPLPPSPKDRAAAEGAAQPAEPFTASVLPGTRYVGSDKILFAAIKPGDYAGAAVTE
                     GRGGTLRAQEVYLYAEALRGTGEGRFPEGGRLIVNGTVSAAQAPQDKQDGTLTLHYRC
                     ALLTGLGRGRTLCEGRASPPAYASPLACAADATIEVLPGTPVSALTVGDKSLLVPGSL
                     VTVAMTKTEDGKNLAPGMVVEKLTPVEKPQSSP"
     gene            3642..5597
                     /locus_tag="VNN98_05455"
     CDS             3642..5597
                     /locus_tag="VNN98_05455"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: protein motif:HMM:NF017464.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008237 - metallopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M13 family metallopeptidase"
                     /protein_id="HWM61576.1"
                     /translation="MDLSSLDSAVKPGDNFFLHMNGGWLRTATIPADRSSTGSFQDLQ
                     ILSEERLKTIVADLEKKPEAGLSPEEKKLRDLYDAFMDTAAIEAKGLAPVQKDLDYLA
                     GLKTLDDVAHAMGSVRLSTMSVYNIGVGVDDKNPDNYSVNLGQSGLGMPDRDYYLSSD
                     EAIVKTREAYRKYLADMMTLAGMSDAAARADRVLALETEIAKVSWNRADRRDEDKVYN
                     PMPASALKTLAPDFAWDAFLSNDGIPLKKPDGSERYVIVAEKTAFAPLAAIFKNTPVS
                     TWRDYLTVHYLHTFSSYLPKRFDDLAFSFYGTVLTGRTQQLDRKTRAMHLLDQQLGEA
                     LGKLYVARYFPPEAKAKADTLVANLLKAYEADIKTLDWMSPATRARALEKIHQFTPKI
                     GYPTKWRDYSAFEVVRGDLIGNAQRSTVYEWNRDVTRINQPVDKSEWGMTPSTINAYY
                     NPSFNEIVFPAAILQPPFFDPAADDAVNYGAIGAVIGHEISHGFDDQGSKYDGKGVFQ
                     DWWTKEDRANFDARTAALVKQYDSYEPLPGLHVIGKNTLGENIADNAGLAIALKAYHV
                     SLNGKPAPMLDGYTGDQRLYLSFGQVWRTKMRDSALRTQTLSNEHTVAEFRVIGPTRN
                     QDAWYDAFDVKPGEKYYLPPDQRVHLW"
     gene            5834..6916
                     /locus_tag="VNN98_05460"
     CDS             5834..6916
                     /locus_tag="VNN98_05460"
                     /inference="COORDINATES: protein motif:HMM:NF012421.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III polyketide synthase"
                     /protein_id="HWM61577.1"
                     /translation="MPKAFINRIATANPPHDVHDGFLRFGQQMLKGDTRRMALFDRMA
                     DRCGISHRYSFFAPPSAGLESGVKGVSVDAEGFYRRGAFPDTGARMQKFEAWAPGLAV
                     EAVEKLLAGEDRSRITHVIVTSCTGFSAPGIDLALIERCGLSPSVERTMVGFMGCYAA
                     INALKLARHIVRSEPDARVLAVNLELCTLHLHETADLEEILSFLLFADGCAAALVSAD
                     PVGVEINAFRAALVPGTRELIRWHIRQQGFDMVLSGAVPGAIRTALSGSRDDILGGAN
                     DIELWAVHPGGRTVLDAVEQAFALPPAALSASRSVLNDYGNMSSGTVMFVLDRIMRSG
                     AGGQRGCAMSFGPGLVAETMMFRMAA"
     gene            7074..7772
                     /locus_tag="VNN98_05465"
     CDS             7074..7772
                     /locus_tag="VNN98_05465"
                     /inference="COORDINATES: protein motif:HMM:NF024895.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane beta-barrel protein"
                     /protein_id="HWM61578.1"
                     /translation="MRPEEKDEGSSMNRTQMTVGLFVVAGLAAFAPATANAQSALGPY
                     LALGAGYDEMPDRNLVINGHAVSSQWNSGYGALAAVGYKWYFGLRAEAEYSGRVAWVK
                     TFNQTAPWAGTQWDNSVMVNALYDFELGWPVTPYIGGGLGLTQIQWGNNFRAPAQVPP
                     TIYDGESIRPGWQGIAGLSYAVTPQIAVALDGRIKGSMGDFNFPGSVAGRSINQFNYE
                     THSIFVSVRYAFGG"
     gene            7832..8119
                     /locus_tag="VNN98_05470"
     CDS             7832..8119
                     /locus_tag="VNN98_05470"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61579.1"
                     /translation="MTDELHQDRRAGSVSRRQALVQSTTSVAALACVLGGCATSTKVQ
                     GNTPQTESQYQDHPSGLERCGVCKHFIPLSGCEVVAAPVQANGWCRFYALL"
     gene            complement(8150..8770)
                     /locus_tag="VNN98_05475"
     CDS             complement(8150..8770)
                     /locus_tag="VNN98_05475"
                     /inference="COORDINATES: protein motif:HMM:NF025134.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative 2OG-Fe(II) oxygenase"
                     /protein_id="HWM61580.1"
                     /translation="MTVVSHEVHPLFVEPYFRANIAGAISPRQVEFIKNLKMVNNMEN
                     LISENLYIFEESELRSVKDAIQEVLDIYSRDVMCIPQKLYVTQSWSLTCNPNIGMHGH
                     SHSNSVLSGSLYYCELPSPPASMVFTRHVSYQQIDLAPEASKRNIYNTPINRIIPRQD
                     DVFLFSSRLTHMVEPNASTQMRHSIAFNTFVKGKLGNYRDVSELVL"
     gene            complement(8854..9396)
                     /locus_tag="VNN98_05480"
     CDS             complement(8854..9396)
                     /locus_tag="VNN98_05480"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61581.1"
                     /translation="MDRCFFFAAMSCALLSQSAFADTRDDVMAGMQRCRAIQDDRAWL
                     DCTYGAEQPMRGKLGLPPAPEFQQRLVPPPPTSVDAGARKALPSVPPHRSASFLQILT
                     GSAAPLTVSTLASVQYDSQGAFILTLQNGQVWYQVDVEGGQKARLKLGARTTVTPGAL
                     GSYDLKTDGSPHVYKVERKA"
     gene            9661..>11133
                     /locus_tag="VNN98_05485"
     CDS             9661..>11133
                     /locus_tag="VNN98_05485"
                     /inference="COORDINATES: protein motif:HMM:NF024753.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HWM61582.1"
                     /translation="MKKVAIALAACCGAATLFFQVSAQEAPPAPPAISPGEAAQAVRD
                     FNTTCAGCHGENAGGGDRAPALVDNPHLRTLGAAGIEAVIRNGQRAMPPFANLPQAEL
                     GRLAAWLHSLNLSGLQSAPPEQVAAGEAFFYGAGGCSGCHMVGGRGGSSGPDLSAIAA
                     RSTRAELEHWLDDPTAMMGTKSLSICPGWAFCPDFQWAIQDVALKSGEKLRGFARRRT
                     EHEVALQTLDGKFRMLFTEEIATIVQEKRSYMPQFHGGPAERANLLAYLGTLGEVNPG
                     PLQHAVPPVSQAEIDAVMHPRPGDWATYNGRRDGNHYNPLAQINVRNVKQLQPQWTFV
                     PGGVGLEGEPIVVDGIMYVTGGPQVCALDARTGLGIWCTPRTNGLGAQHAGRGGAARN
                     NQAPAPTGPNRGVGILGDRLFYTSDDAYLVCLNRLTGAVMWTEPLAEPTEKGKIYTSA
                     SVLVVNDLVITGIAGGDTPMRGFIVAFHADTGKEAWRFYTI"
BASE COUNT         2098 a         3399 c         3480 g         2156 t
ORIGIN      
        1 ggtggagatt tcctcttcca aggcgctgat ttggcggctg accgcagact gcgacaggcc
       61 cagcgtctgc ccggcgtggg tgaagctgcc ggcgctcgcc accgcgtgga agatacgaag
      121 cttatcccaa tccataacgt cccccttatt cgtacctaag cgctgagtgg caagtctcca
      181 gaatgtgctc ccgccaggaa gcgttcggct tccagcgccg ccatgcagcc catgcccgcc
      241 gccgtcacgg cctggcggaa tatcttgtcc ttgacgtcgc cggccgcgaa cacgcccgcc
      301 acgctggtat gcgtggagtc cggcgcggtc ttgatatagc cgctctcgtc catctccagc
      361 tggccatgga acagctgcgt cgccggcgaa tggccgatgg cgacgaacag cccgtccaca
      421 ctctgctcat gcggcgagcc ggtgacggtg ttgcgcagct tcacgccggt gacgcctttg
      481 ggctgtgagg tgcccagcac ttcggtgacc tcggtgtcgt agagtatgtc gatcttcttg
      541 ttggcattca gccgcgcctg attggtcttg tcggcgcgca gaaaatcgcg gcgatgcacc
      601 agggtcacct gatcggcgaa attggtcagg aacagggcct cctccaccgc ggtgttgccg
      661 ccgccgacca cggcgacctt tttgccccgg aagaagaagc catcgcaggt ggcgcaggcc
      721 gagacgccga agccctggaa ctggctttca ctggccaggc ccagccagtt ggcggatgcg
      781 ccggtggcga tgatcaaagt gtcggcggta tagacgtcgc cgctgtcgcc caagagcgtg
      841 aaaggccgcc gcgacaggtc cacattggcg atagtgtcag ccacgaaatt ggtgcccagg
      901 gctgctgcct gctcctgcat ctgatccatc agccagggtc cctggatggc ttcggcaaag
      961 ccggggtaat tctccacctc ggtggtgatg gtgagctggc cgcccggctg gatgccggcg
     1021 atcagggtcg gctccagcat ggcgcgcgcc gcataaatgg cggcggtgca gccggcgggg
     1081 ccgctgccca ggatgatgac tttggaatgt ttgggggaat tggcggtcat tggttttctt
     1141 tgggggttct tcggctgctt tgcggctttc gcgggtctcg ctatgtcata ttgtaatggc
     1201 agggctccgc gtcaagccga gttaaaagcc aagcccttgc atgaggttat gcgccaccat
     1261 tccggcgcaa acttccgctg gttacgcctc gattcgagaa atattattgc ttgaggcctc
     1321 cgcgcgcgtt ataggaccgt tccccgcacc caggacattt cgtggacacc cgcaagctgg
     1381 acgccattga cctgcgcatc ctgtccgagc tccaggccga cggccgcatc accaatgtcg
     1441 aactgtcgcg ccgcgccaag atcaccgccc cgccttgcct gcgccgcatc cgcgcgctgg
     1501 agaaggcggg cttcatccgg ggctatcatg ccgaactgga cggccggtcg ctgggctatg
     1561 aagtcaccgg ctttgtcttt gtcggcctgg ccagccagaa ggacggcgat ctcaagcatt
     1621 tcgaggaaag cgcgcggcgc tggccggaag tgcgcgagtg ccacatgttg tcgggcgagg
     1681 tggatttcat cctcaaatgc gtggcgcggg acctttcggc tttccaaagc ttcatcacca
     1741 atacggtaac cgcggaaaag aacgtcgcca gcgtgaaaag ctcgctggtg atccatgcct
     1801 ccaagcagga gccgggctac ccgatcgtgg tcccagccta aaggcattct ttgaatatgc
     1861 ccgcttaaaa gcccgctaaa aagacagatc atttcgccgc gggagccctt ctgccccgca
     1921 acggaaatgg ctaggcttgc gcccaacaat aattgggagt gggaagatga cacgaacaac
     1981 tctgtttctg gcgggagcgg ccctgctggc ctccaccgcc ctcgtgacgg ccgcgccggc
     2041 cgtcaccgcg aaaatgaaaa cggcggttgc cgataccgcc cgccccgccg ccgacacggc
     2101 gcgcgacgag taccgcaagc ccgcccagat gctggctttt gccggcatca cgccgggcaa
     2161 ggtggtggtg gatatgctgc cgggcggcgg ctatttcacc cgcatcttcg ccaaggcggt
     2221 ggagccgggt ggccgggtct acgcctattt cggcagccag tatgacgcgc ggctcaagac
     2281 ccagaacaag gatcccgaca accagttcgc cgacctgaag gcggcctaca agaatctggg
     2341 cgtcatccac ggcccgctgg cccagttcgt cacgcctgag ccggtggacg tggtgtggac
     2401 ctcggacaat taccacgaca tgcacaccaa ggcctatgac atggatgtga gtgcggtgaa
     2461 caaggcgatc tacaaatcgc tgaagccggg cggctattac attatcgtcg atcataaggc
     2521 ggcggaatcg accggcgacg acgttagcga ggccctgcac cgcatcaagg aatccaccac
     2581 caagaccgaa gtggaagcgg ccggcttcaa gctggtggcg gaaggcaagg acatgatcaa
     2641 cgccaccgac gatggcacca agagggtgtt cgaggccgac gtccggggca agaccagcca
     2701 gttcatgctc aaattccaaa agccgcgtca ttgaaggccc attgttgaga tcgactttgc
     2761 gttttttgtt tgcctgcgcc gcggtgttca ccgcggcgca gtgcgttacg ggtttttgct
     2821 tggaagtgga cgcccagccg gtgacgcggg tgaaggccag gctcacggcc tttgatgggc
     2881 aagtcatgag tttggagccg ttgccgcctt cgccaaaaga ccgggcggcg gcggaaggcg
     2941 cggcccagcc ggcggagccc ttcaccgcgt cggtcctgcc gggcacccgc tatgtcggct
     3001 cggacaagat tttgttcgcc gccatcaagc cgggcgacta tgccggcgcg gcggtgacgg
     3061 aagggcgcgg cggtaccctg cgcgcccagg aagtctatct ctatgccgag gccttgcgcg
     3121 gcaccggcga gggccgcttt cctgaaggcg gccgcctgat cgtcaacggc accgtcagcg
     3181 cggcgcaggc cccgcaagac aagcaggacg gcaccctgac cctgcattat cgttgcgcgt
     3241 tgctgaccgg cctgggccgc ggccgcacgc tttgtgaggg cagggcgtcg ccgcccgcct
     3301 atgccagccc gctggcctgc gccgccgatg ccaccatcga ggtgttgccc ggcacgccgg
     3361 tctcggccct gacggtgggc gacaagagcc tgctggtccc cggcagcttg gttacggtgg
     3421 cgatgaccaa gaccgaagac ggcaaaaacc tcgcccccgg tatggtcgtg gaaaagctga
     3481 cccccgtgga aaaaccacaa tcctcccctt aagctgcacc gtcattcgga gaacccccca
     3541 tgtcccgtct tttgtctttt ctgtgcggtg cgttactggc cgcgactcca gccctctcgc
     3601 cggcttgggc acagtccggg cccaagttgg gaaaatgggg cgtggacctc agctcgctgg
     3661 atagcgcggt caagcccggt gacaatttct tcctgcatat gaacggcggc tggctgcgga
     3721 cagccacgat ccctgccgac cgctcctcca ccggctcgtt ccaggacttg cagatactca
     3781 gcgaggagcg gctgaaaacc atcgtcgccg atctggagaa gaagccggaa gccgggctgt
     3841 cgccggaaga aaagaaactg cgcgatctct acgacgcctt catggacacc gccgccatcg
     3901 aagccaaggg cctggcgccg gtgcagaagg acctggacta tctggccgga ctcaagacgc
     3961 tggacgatgt cgctcatgcc atgggctcgg tccgcctctc caccatgagc gtctacaata
     4021 tcggcgttgg ggtggacgac aagaatcccg acaattattc ggtcaatctt ggtcagtcgg
     4081 gcttaggaat gccggaccgc gattattatc tgtccagcga cgaggctatc gtcaaaaccc
     4141 gcgaggctta tcgcaaatat ctcgccgaca tgatgacctt ggcggggatg agcgatgcgg
     4201 cagcgcgcgc cgaccgcgtg ctggcgctgg agaccgagat cgccaaggtc tcctggaacc
     4261 gcgccgaccg ccgcgacgag gacaaggtct acaatcccat gccggcgtcg gcgctcaaga
     4321 ccttggcgcc cgatttcgcc tgggatgctt tcctgtccaa tgacggcatt ccgctcaaga
     4381 agccggacgg cagcgagcgt tatgtcatcg tggcggagaa gaccgccttc gcgccgctgg
     4441 ccgccatctt caagaacacg ccggtctcga cctggcgcga ttatctgacg gtgcattacc
     4501 tgcacacttt ctcgtcttat ctgcccaagc ggttcgacga tctggctttc tccttctatg
     4561 gcacagtgct gacgggccgc acccagcagc tagaccgcaa gacccgcgcc atgcacttgc
     4621 tggatcagca gctgggcgag gcgttgggca aactgtatgt ggcgcgctac ttcccgcccg
     4681 aagccaaggc caaggccgac acgctggtcg ccaacctgct gaaagcttat gaggccgaca
     4741 tcaagaccct ggactggatg agccccgcca cccgtgcccg ggcgttggag aagatccacc
     4801 agttcacccc caagatcggc tatcccacca agtggcgcga ttattcggcg tttgaggtgg
     4861 tgcgcggtga cctgatcggc aacgctcagc gttccacggt ctatgagtgg aaccgcgacg
     4921 tcacccgcat caaccaaccg gtggacaaga gcgagtgggg catgacgcct tccaccatca
     4981 acgcctatta caatccctcc ttcaacgaaa tcgtgtttcc cgccgccatc ctgcagccgc
     5041 ccttcttcga tccggccgcc gacgatgcgg tgaattacgg cgccattggc gcggtgatcg
     5101 gccatgagat cagtcacggc ttcgacgacc aaggcagcaa gtatgacggc aagggcgtat
     5161 ttcaggattg gtggaccaag gaagaccgcg ccaatttcga tgcccgcacc gcggcgctgg
     5221 tgaaacagta cgactcctac gaaccgcttc cgggcctgca cgtcatcggc aagaacacgc
     5281 tgggcgagaa tattgccgac aatgccggcc tggccatcgc gctgaaggcc tatcatgtgt
     5341 cactgaacgg caagcctgcg ccgatgctgg acggctatac aggcgaccag cggctgtacc
     5401 tgtccttcgg ccaggtgtgg cgcaccaaga tgcgcgacag cgctctgcgc acccagaccc
     5461 tgtcgaacga gcatacggtg gcggaattcc gggttatcgg cccgacccgc aaccaggatg
     5521 cctggtatga cgccttcgac gtcaagccgg gggagaaata ctatctgccg cccgaccagc
     5581 gtgttcacct ttggtgaaca cgctttttat tttcttgtcg cgcggcctgc gccgtaccac
     5641 cgtccgcgcg tggaccgtgg ttcaagccgc gaaggtgagt ttttttgctc accgagttcg
     5701 ctttgatgaa cgggttccgc tttatggcaa agctgaaccg ggaataaatg cggcccaccc
     5761 acgtctgtaa ttaaaaggcg gcacggggtg cgcgtctagg ctagggtgat aatgccccaa
     5821 cacggaccgc gccatgccca aggctttcat caaccgcatc gccacggcca acccgccgca
     5881 cgacgtgcat gacgggttcc tgcgctttgg ccagcagatg ctgaagggcg acacccgccg
     5941 catggcgctg ttcgaccgca tggccgaccg ctgcggcatc agtcatcgct attctttttt
     6001 tgcacccccg agcgcaggtc tcgagtccgg cgtcaagggt gtgtcggtgg atgcggaagg
     6061 attttaccgc cggggcgcat ttcccgacac cggggcacgg atgcagaagt tcgaggcctg
     6121 ggcccccggc ctggcggtgg aggcggtgga gaagctgctg gccggcgaag accgttcgcg
     6181 catcacccat gtcatcgtca ccagctgcac cggcttttcc gcccccggca tcgacctggc
     6241 cctgatcgag cgctgcggcc tgtcaccgtc ggtggagcgc accatggtgg gcttcatggg
     6301 ctgctatgcc gcgatcaacg ccttgaagct ggcgcggcac attgtgcgct ccgagcccga
     6361 tgcgcgcgtg ctggcggtga atctggaact gtgtactctg catctgcacg aaaccgccga
     6421 cctggaagag atcctgtcct tcctgttgtt cgccgatggc tgtgccgcgg cgctggtctc
     6481 ggccgatccg gtcggggtgg agataaacgc cttccgcgcc gcgctggtgc cgggcacaag
     6541 ggaactgatc cgctggcata tccgccagca gggcttcgac atggtgctgt cgggcgcggt
     6601 gccgggcgcc atccgcaccg cgctgtcggg gtcgcgcgac gacatattgg gcggggccaa
     6661 cgacatcgaa ttgtgggcgg tgcatccggg tgggcgcacc gtgctggatg cggtggagca
     6721 ggccttcgcg ctgccgcccg cggcgctgag cgcttcgcgc tcggtgttga acgactatgg
     6781 caacatgtcg tcgggcacgg tgatgttcgt gctggaccgc attatgcgca gcggcgccgg
     6841 cggacaacgc ggctgcgcca tgtccttcgg gcccggcctg gtggccgaga ccatgatgtt
     6901 ccgcatggcg gcgtgactcg agtgcgccct aaccgcaatc accggcacat ccgcttgcag
     6961 cgctaacatc gcctgcgctc gcggtcaggg tcatccggga atgccggttc ggattttccg
     7021 ggccgatatt ttttcaggaa ggaataatcc gacggactga tccgtcatca gggatgaggc
     7081 ccgaagaaaa agatgagggg agttccatga acagaaccca aatgaccgtt gggttatttg
     7141 ttgtcgccgg ccttgcggcg tttgcgccag ctacagcaaa tgcgcaaagc gcactcggac
     7201 cctatctcgc ccttggcgcc ggttatgacg aaatgcccga ccgcaatctc gtcatcaatg
     7261 gtcacgccgt gagttcgcaa tggaattccg gctacggtgc gctcgccgcg gtcggctaca
     7321 aatggtattt cggcctccgc gccgaggcgg aatatagcgg ccgcgtcgcc tgggtgaaga
     7381 ccttcaatca aacagctccc tgggcgggaa cccagtggga caattcggtg atggtcaatg
     7441 ccctttatga tttcgagctt ggctggccgg ttacacccta tatcggcggc gggctgggcc
     7501 ttacgcagat ccaatggggc aacaatttcc gggctccagc tcaggtcccc ccaaccatct
     7561 acgacgggga aagcatccgg ccaggctggc agggtatcgc aggcctgtca tacgcagtga
     7621 cgccccagat tgcagtggcg ctggacggtc ggatcaaggg ttccatgggc gacttcaact
     7681 tccctggcag cgtggcagga aggtccatca accaattcaa ttatgagacg cacagcatct
     7741 ttgtcagcgt ccgctatgcg ttcgggggct gaaccggcac gccttcgcac tgtacctcag
     7801 ggttttctcg tcaaatagcc caggagattt catgaccgat gaacttcacc aggaccggcg
     7861 tgcgggcagc gtttcgcggc ggcaagccct ggtccaatca acaaccagcg tcgcggcgct
     7921 tgcgtgcgtg ctcggcggtt gcgcgaccag cacaaaggtt cagggcaaca cgccacaaac
     7981 cgaatcacag tatcaggatc atcccagcgg gctggagcgc tgcggggtct gcaagcactt
     8041 cattccattg agcggctgcg aggtcgttgc ggctccggtt caggccaatg gctggtgccg
     8101 gttttacgct cttctttgac cgccgggcgg attgagtccg cggcgaaagc taaagcacca
     8161 gttcggacac gtcgcgataa ttgcccagct tgcctttgac gaaggtgttg aacgcgatcg
     8221 agtggcgcat ctgtgttgac gcgttcggct cgaccatatg ggtcaggcgc gaggaaaaca
     8281 aaaatacatc gtcctgcctg ggaatgatcc tgtttatcgg cgtgttgtag atgttgcgct
     8341 tgctggcttc cggtgcgaga tcgatctgct gatagctgac gtgccgcgtg aaaaccatgc
     8401 tggcgggcgg cgagggcagc tcgcaataat aaagcgagcc ggacagcacg gagttcgagt
     8461 gcgaatgccc atgcatgccg atattgggat tgcaggtcag cgaccaggat tgcgtcacgt
     8521 aaagtttttg cgggatgcac atgacgtcgc ggctatagat atcgagcacc tcctggatcg
     8581 catccttgac gctcctgagt tcggactcct caaaaatata gagattctcg gagatcaaat
     8641 tctccatatt gttgaccatt ttcaggttct tgatgaattc gacctggcga gggctgatgg
     8701 cgccggcgat gttcgcgcgg aaatagggtt cgacaaacag cgggtgaact tcgtgagaaa
     8761 ccacggtcat cttgttttcg tccccagccc tggaaatata gagcgatatc atattgcacc
     8821 gccaaaacag acttcaatgc ggcggcggag tggttacgcc tttcgctcca ctttataaac
     8881 gtgggggctg ccgtccgttt tcagatcata actccccagg gctcccggcg ttacggtcgt
     8941 tctggctccc agcttcaggc gcgctttctg gccaccttct acatcgacct gataccaaac
     9001 ctggccattt tgcagggtca ggatgaatgc gccctggctg tcatattgaa cggacgcaag
     9061 ggttgagacc gtgaggggcg ctgcgctgcc cgtcagaatt tgaaggaagc tcgcgctgcg
     9121 atgcggcggc acggatggca gtgcttttcg tgcgccggcg tccacggagg ttggcggggg
     9181 cgggaccagg cgttgttgga attccggtgc cggcggcagc ccgagctttc cccgcatggg
     9241 ctgttcagcc ccgtaggtgc agtctagcca cgcccgatca tcttgaatgg cgcggcagcg
     9301 ctgcattccc gccatcacgt catcgcgcgt atcggcaaac gccgattggg acaagagcgc
     9361 acaactcatc gccgcgaaaa aaaagcatct atccatcgcg aaactcgtaa ccggttttta
     9421 catcccagcc gcaggccgta gaaagttcaa gggccggctc ggcgcgcctc tcagtatgtg
     9481 aagggcagtt tcttatcggc catatttggt catgcggcgg cggattggtc cagcataatg
     9541 cggaaaagcc tggaagcagc cgagaagttc ttttggaaaa actcaggtgc cgtctataag
     9601 tggatcaagc ggacgccgga acaaccaggc ctttcttgag cttgtccaat ggggaaccct
     9661 gtgaaaaagg tggcaattgc gcttgcggct tgttgcggcg ctgcgacgtt gttttttcag
     9721 gtctccgcac aggaagcgcc gcccgcaccg cccgctatca gtccgggcga ggccgcgcag
     9781 gccgtgcgcg atttcaatac gacctgcgcc gggtgccatg gcgaaaatgc cggcggcggc
     9841 gacagggccc ctgcgctggt cgataatccg catttgcgca cgcttggcgc ggccggaatc
     9901 gaagccgtta tacgaaacgg tcaacgcgcc atgccgccat ttgcgaacct gccccaggcg
     9961 gaactgggca ggcttgctgc ctggcttcat tccttgaatc tttctgggct gcagtcggcg
    10021 cctcccgagc aggtggccgc cggtgaggcg ttcttttatg gcgcaggcgg atgttccgga
    10081 tgccacatgg tcggcggccg cggcgggtct tccggaccgg acctgtcggc cattgcggca
    10141 cgatccacca gggccgaact ggagcattgg ctcgacgatc caaccgccat gatggggacc
    10201 aagtcgcttt ccatctgtcc gggctgggcc ttctgtccgg actttcagtg ggcgattcag
    10261 gacgtcgcgc tgaagtcggg ggaaaagctg cgcggctttg cgcggcggcg gactgagcat
    10321 gaagtcgcct tgcagacgct cgatggcaag ttccggatgc ttttcaccga ggagatcgcc
    10381 accattgtcc aagaaaaacg ctcttatatg ccgcaatttc acggcggccc cgccgagcgc
    10441 gcaaatttgc tggcctatct cggcactttg ggggaggtaa accccggacc gcttcagcat
    10501 gccgtgccgc cggtctcaca ggccgagatc gatgccgtga tgcatcccag gccgggcgat
    10561 tgggcgacct ataacggccg gcgcgatgga aaccactaca atccgctggc gcaaatcaac
    10621 gtcaggaacg tcaagcaatt gcagccgcaa tggacattcg ttccgggcgg cgtcggcctg
    10681 gaaggcgagc cgatcgtggt ggacgggatc atgtatgtca cgggagggcc gcaggtctgt
    10741 gctctcgatg ccagaaccgg cctcggcatc tggtgcacgc cgcgtaccaa cggccttggg
    10801 gcgcagcacg cgggtcgcgg cggggcggcg cggaacaatc aagcgccggc gccgaccggt
    10861 cccaatcgag gggtcggcat tctcggtgat cgcctcttct acacatctga cgatgcctat
    10921 cttgtctgtc tcaacaggct cacaggggcg gtgatgtgga cggagccttt ggcggaaccg
    10981 acagagaagg gcaagatcta cacttcggcg tcggtcctgg tggtgaatga tctggtcata
    11041 accgggatcg cgggcggcga tacccctatg cgcggtttca tcgtcgcttt ccacgccgat
    11101 acgggaaaag aggcgtggcg cttctatacc atc
//
LOCUS       DATMDK010000285         2296 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_603498,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000285 DATMDK010000000
VERSION     DATMDK010000285.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2296)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2296)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2296
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_603498"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(123..320)
                     /locus_tag="VNN98_05490"
     CDS             complement(123..320)
                     /locus_tag="VNN98_05490"
                     /inference="COORDINATES: protein motif:HMM:NF014470.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0043953 - protein transport by the Tat
                     complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase TatA/TatE family
                     subunit"
                     /protein_id="HWM61583.1"
                     /translation="MGTFGIWHWLILGAVALVLFGGRGKVSDLMGDFGKGINSFKKGL
                     SEKDDPKVINAEDTNKDKTTV"
     gene            complement(537..2048)
                     /locus_tag="VNN98_05495"
     CDS             complement(537..2048)
                     /locus_tag="VNN98_05495"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF014587.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_process: GO:0006793 - phosphorus metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Ppx/GppA family phosphatase"
                     /protein_id="HWM61584.1"
                     /translation="MASVTDLHSAVLPKSQVRARGPVAIVDIGSNSVRLVVYESQTRV
                     AATLQNEKSICAIGRDMVTTGRLHAEGCAAALEALSRFRLVADGLNVEYRDAVATAAA
                     RDASNGAEFIRRAEAAWGRPIRILAGEDEARIAAEGVVAGIPDADGLAADLGGGSLDM
                     VSVKGGQTGRAYTLPFGPLRLMDQSKGDPDRARDIVDKGLRNIEGLSAPALYAVGGIW
                     RSFARVDMEEHNYPLHVLQHYTIPRGRALRLCRLLAGLSRDSVRKIKVVSKRRAESLP
                     YGAVVLERLLEAGDIKDVVISAYGLREGLLYARLPAEERGKDPLVEFARAANARTARV
                     PVHAHEMLGWTAPLFEGDSAQDARVREASAFFSDVAWRRHPDDRAAGAFGQVLTAPFA
                     GASHRDRALIAASVFHRYSGDEDFPQAMALAGLLDKDEEKRALVLGLAWRFAFSLSAS
                     AAGELANYRLRMTPSKVILEVPSRREAIAGEPVQKRLGELADALGRKGEILVG"
     gene            complement(2051..>2296)
                     /locus_tag="VNN98_05500"
     CDS             complement(2051..>2296)
                     /locus_tag="VNN98_05500"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61585.1"
                     /translation="VETLVPIENPTVHQQVLDQIMVAQLKDQAQSWYMEADGRYVRDS
                     HSEDGDAFSAHTYFMTNPSLSGRGRALKMQNPAKRKS"
BASE COUNT          426 a          762 c          717 g          391 t
ORIGIN      
        1 gcgaccacga gcatgatgat gatgtgctgc cagctgaaaa tgtcgaacat tgagatggca
       61 cctgcgcgaa attcccaaaa acgcgactgg cggaaccgcg cgctttgaaa caaagagacg
      121 gatcagaccg tggtcttgtc cttgttggtg tcttcggcgt tgatcacctt gggatcgtcc
      181 ttttcggaca agcccttctt gaagctgttg atgcccttgc cgaagtcgcc catcaggtcg
      241 gaaaccttgc cgcggccgcc aaacagcacc agcgccacgg cgcccaaaat cagccagtgc
      301 cagatgccga atgtacccat gagacttctc ctaaaccttt gaaagtctga acctttggcc
      361 gcgcccccgg tctggggaca cggctcttgg cccctttaaa gcgcctttgg gggccggggc
      421 gcaagtatag ggcaaaaatg gggttatttg gcttagcttt tcttggcgag cggagcgagc
      481 ttagaaaagc ttgcccctcc ccgagcggca gcgagggagg cgcgcagccg caacagctag
      541 ccgactagaa tttcaccttt acgccccagc gcatccgcca gctcccccag gcgcttttgc
      601 accggctcac cggcaatggc ttcgcgtcgg ctgggcactt ccaggatgac cttggacggc
      661 gtcatgcgca ggcgatagtt ggccaattcg cccgccgcgc tagccgacag cgaaaaagcg
      721 aagcgccaag ccaggcccag caccaaggcg cgcttttcct cgtccttgtc caagagcccg
      781 gccagcgcca tggcctgggg aaaatcctcg tcgccggagt agcggtggaa gaccgaggcc
      841 gcgataagag cgcggtcgcg atggctggcg cccgcgaaag gcgcggtcag cacctggccg
      901 aaggcgcccg cagcgcggtc gtcgggatgc cgccgccagg ccacgtcaga gaagaaggcg
      961 ctcgcctcgc gcacgcgcgc atcttgcgca ctgtcccctt cgaacagcgg cgcagtccag
     1021 cccagcattt catgggcatg caccggcaca cgcgcggtgc gggcattggc ggcgcgggcg
     1081 aattccacca gggggtcctt gccgcgttcc tccgccggca ggcgggcata gagcagacct
     1141 tcgcgcaggc cgtaggcgga gatcaccaca tccttgatgt cgccggcctc cagcagccgc
     1201 tccagcacca ccgcgccata gggcaggctt tcggcgcggc gcttggacac gaccttgatc
     1261 ttgcgcacgc tgtcgcgcga caggccggcc agcagccggc acagcctgag cgcccggccg
     1321 cgcggaatgg tgtagtgctg caacacatgc aggggatagt tatgctcctc catatccacc
     1381 cgcgcgaagc tgcgccagat accgcccacg gcatacagtg cgggtgccga caggccttcg
     1441 atattcctga ggcccttgtc cacgatatcg cgcgcccggt cgggatcgcc cttggactgg
     1501 tccatcagcc gcaagggtcc gaacggcagg gtataggcgc ggccggtctg gccgcctttc
     1561 accgacacca tatccaggct gccgccgccc agatcggccg ccaagccgtc ggcgtcggga
     1621 atgcccgcca ccacgccttc ggcggcgatg cgggcttcat cctcgcccgc cagaatgcgg
     1681 atcggccggc cccaggcggc ctcggcgcgg cggatgaact ccgcgccatt ggaggcatcg
     1741 cgcgccgccg cggtcgccac cgcatcgcga tattccacgt tcaaaccgtc cgcgaccaag
     1801 cggaagcgcg acaatgcctc caacgccgcg gcgcagcctt cggcatgcag ccgcccggtg
     1861 gtgaccatgt cgcggccgat ggcacagatg gatttttcat tttgcaaggt ggccgccacc
     1921 cgggtctggg attcatagac caccagacgc accgaattgg agccgatatc cacaatggcg
     1981 acgggcccac gggcgcggac ctggctcttg ggcagcacag ccgagtgaag atccgtgacc
     2041 gacgccaccg ttagctcttg cgctttgccg gattctgcat cttgagcgcg cggccgcggc
     2101 ccgaaagcga cgggttggtc atgaaatagg tgtgcgcgga gaaagcatcg ccgtcctcgg
     2161 aatgagaatc acggacatag cgcccgtcgg cttccatata ccagctttgc gcctggtctt
     2221 tcagctgcgc caccatgatc tggtcaagga cttgttgatg gaccgtgggg ttttcgatgg
     2281 gaaccagggt ctcgac
//
LOCUS       DATMDK010000286         2564 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1049785,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000286 DATMDK010000000
VERSION     DATMDK010000286.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2564)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2564)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2564
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1049785"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(6..1274)
                     /locus_tag="VNN98_05505"
     CDS             complement(6..1274)
                     /locus_tag="VNN98_05505"
                     /inference="COORDINATES: protein motif:HMM:NF019607.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-dependent sugar dehydrogenase"
                     /protein_id="HWM61586.1"
                     /translation="MARTAYVPTGATCDGWPRAPIGMAPGYCAGIVVAPPEDFGARIL
                     RMPRVLLPLPGGKDFLVTDVGRWDNSGGKVFRLTAERGQPAILTPVLTDLYMPHGIMR
                     GPDSKVYVNEIGRIFRFDPAAADPQATMETVIAGLPDTRIHFSLHPLSSFMFDANKDL
                     LVAVGAPTDQCTKDDMPDGTDFCAQSEGPEKAALVRRYAYQGGGKYSPDFTVMAQGLR
                     NSVAMVRHRSGTLLQAENGMDFPPADSPFEELNVLHQGAHYGWPYCYEMQSAAPVWAQ
                     AHVMDCGGPAHTKPVRLLPPHSAPLSMLYYNGAMFPKLRGKLLISLHGYRPAGARIAA
                     FAVDRHGIPLLAANAHYDAYAGPEGDAMVSLPYAGPASEPLILTPGWNNVNASHPLGA
                     PLGLAVAEDGAIWVVEDRNATILRISRDRP"
     gene            complement(1346..1867)
                     /locus_tag="VNN98_05510"
     CDS             complement(1346..1867)
                     /locus_tag="VNN98_05510"
                     /inference="COORDINATES: protein motif:HMM:NF024773.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0120225 - coenzyme A binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA-binding protein"
                     /protein_id="HWM61587.1"
                     /translation="MSLQQYPDSLIKSILRSVKTIAMVGASGNDIRPSYFAMMYLLNK
                     GYKVVPVNPGMVGKEILGQKVYAALKDVPAPVDMVDIFREAKYAPDIARETLAEKDRL
                     GVKILWMQLGVISPEAERIAADAGLTVIMNRCPKIEHGRFSGEIGWMGVNRRVIDNRK
                     PLLFGKGGSLKNA"
     gene            complement(1864..>2564)
                     /locus_tag="VNN98_05515"
     CDS             complement(1864..>2564)
                     /locus_tag="VNN98_05515"
                     /EC_number="4.2.1.17"
                     /inference="COORDINATES: protein motif:HMM:NF006008.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="enoyl-CoA hydratase"
                     /protein_id="HWM61588.1"
                     /translation="LMSALQAALEGAAGDNATRVIVIAADGPVFSSGHDLKELSRHRA
                     DGDAGRSAYAGLFSQCSAMMQAIVRSPKPVIAQVQGVATAAGCQLVASCDLAVASTSA
                     RFATPGVDIGLFCSTPMVALSRNVGRKAAMEMLLTGEAIDGEQALRIGLINRIVAPEI
                     LESETMMLAGKIAAKPRITIRTGKEAFYRQLEMPLSEAYAYTSQIMTENMLQAEACEG
                     IGAFLEKREPRWPV"
BASE COUNT          452 a          818 c          811 g          483 t
ORIGIN      
        1 cttatctagg gcctgtcccg cgagatgcgc aagatcgtgg cattcctgtc ttccaccacc
       61 cagatggcgc catcttccgc cacggccagt cccagcggtg cgcccagcgg atggctggca
      121 ttcacattgt tccagcctgg cgtgagtatc agcggctcgg aggccggccc cgcatagggc
      181 aggcttacca tcgcgtcgcc ctccggccct gcataggcat catagtgggc attcgccgca
      241 agcaggggaa tgccgtggcg atcaaccgca aaagcggcga tgcgcgcccc ggcgggacgg
      301 tagccgtgca aggagatcag caacttcccc cgcaatttcg gaaacatcgc accgttgtaa
      361 tagagcatgc tcagtggcgc actatgcggg ggcagcaggc gtacgggttt ggtgtgtgca
      421 gggccgccgc agtccatgac atgcgcctgc gcccagaccg gggcggcgct ttgcatctca
      481 taacaatagg gccagccgta atgagcgccc tggtgcagca cgttcagttc ctcgaagggg
      541 ctgtcggccg gcgggaaatc catgccgttc tcggcctgca gcaatgtgcc cgagcgatgc
      601 cgcaccatcg ccacggaatt gcgcaggccc tgggccatga ccgtgaagtc cggcgaatat
      661 ttgcccccgc cttgataggc gtagcgccgc acaagtgcgg ctttctcggg cccttccgat
      721 tgcgcgcaaa aatccgtgcc gtccggcatg tcatccttgg tgcattgatc ggtgggcgcg
      781 cccaccgcaa cgagcaagtc tttgttggcg tcgaacatga aagaggacag gggatgaagg
      841 ctgaaatgga ttcgtgtgtc cggcaagccg gcgatcacgg tttccatcgt cgcctgcgga
      901 tcggcggcgg cgggatcgaa gcggaatatg cgcccgatct cgttgacgta aactttgctg
      961 tccggaccgc gcatgatgcc atgcggcatg tagaggtccg tcagcacggg cgtgagtatg
     1021 gcgggctggc cgcgctcggc cgtaaggcga aaaaccttgc cgccgctatt gtcccaccgg
     1081 cctacatctg tgaccagaaa atctttgccg ccgggcaacg gcaacaacac gcgcggcatt
     1141 ctgaggatgc gcgcgccgaa gtcctcaggc ggggcgacca caatgcctgc gcaatatccc
     1201 ggagccatgc cgatgggggc gcggggccag ccgtcgcagg tggcgccggt ggggacataa
     1261 gcggtacggg ccatcgcatc ggccgggaga agcgcgcagg cggccagcaa gactgcgttc
     1321 catattcgcc gcatgttcta tcccactagg cgttcttaag gcttccgcct ttgccgaaca
     1381 gcaatggctt gcggttgtcg atcacccggc ggttgacgcc catccagccg atctcgccgg
     1441 agaagcggcc atgctcgatc ttggggcagc ggttcatgat cacggtcagc ccggcatcgg
     1501 cggcgatcct ctccgcttcc gggctgatca cgcccagctg catccacaat atcttcacgc
     1561 ccagccggtc tttttcggca agagtctcac gcgcaatgtc gggggcgtat ttggcttcgc
     1621 ggaaaatgtc caccatgtcc accggcgccg gtacgtcctt cagcgcggca tagaccttct
     1681 ggcccaatat ctccttgcct accatgccgg gattcacggg cacgacttta tagcccttgt
     1741 tcagcaggta catcatggcg aaataggacg ggcggatgtc attgccgctg gccccgacca
     1801 tggcgatggt cttgacgctg cgcaggatgg atttgatcag gctgtcggga tattgctgca
     1861 gactcacaca ggccaccgtg gctcacgctt ttccaggaac gcgccgatac cttcgcaggc
     1921 ttccgcttgc agcatgttct cggtcatgat ctggctggta taggcatagg cctcgctcag
     1981 cggcatttcc agctggcggt agaaggcttc cttgccggtc cggatcgtga tgcgcggctt
     2041 ggcggcgatc ttgcccgcca gcatcatggt ttcgctttcc aggatttccg gcgccacgat
     2101 cctgttgatc agcccgatgc gcagcgcctg ttcgccgtcg atcgcctcgc cggtcagcag
     2161 catttccatc gccgccttgc ggccgacatt gcgcgacagc gccaccatgg gggtggagca
     2221 gaacagcccg atatccacgc ctggggtggc gaagcgcgcc gaggtggagg ccaccgccaa
     2281 gtcgcagctg gcgaccagct ggcagccggc ggcggtggcg acgccctgca cttgggcaat
     2341 caccggcttg gggctgcgca caatggcctg catcatcgct gagcattggc taaagaggcc
     2401 ggcataggcg ctgcggcccg catcgccatc ggcgcggtgg cggctcagct ccttcaggtc
     2461 atggccggag gaaaagaccg gcccatcggc ggcgatcacg atcacgcggg tggcattgtc
     2521 gcccgccgca ccctccagcg ccgcctgcaa cgcgctcatc aatt
//
LOCUS       DATMDK010000287         2112 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2878248,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000287 DATMDK010000000
VERSION     DATMDK010000287.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2112)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2112)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2112
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2878248"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..534)
                     /locus_tag="VNN98_05520"
     CDS             complement(<1..534)
                     /locus_tag="VNN98_05520"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61589.1"
                     /translation="MGREIHYEVFRRVGAKGGWTMHEIVASRDVAITMAQTLMAEEKA
                     TGVKVVKETYNDDTGDFLTLKIFEEGHNQVKLAPAQEDAPHALPCFKPEDLYSYHARQ
                     TMSRLLTEFLSRNTVTITELIHRADLLEKLEATGTLYQHAIQKIAVAQAANTAAGVQQ
                     IVKSLNELTTQAFHRVYR"
     gene            complement(569..1354)
                     /gene="moeB"
                     /locus_tag="VNN98_05525"
     CDS             complement(569..1354)
                     /gene="moeB"
                     /locus_tag="VNN98_05525"
                     /inference="COORDINATES: protein motif:HMM:NF004281.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008641 - ubiquitin-like modifier
                     activating enzyme activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-synthase adenylyltransferase MoeB"
                     /protein_id="HWM61590.1"
                     /translation="MLSDDELERYARHLVLREVGGPGQGKIRAARVLVVGAGGLGSPV
                     ALYLAAAGIGKLGLVDDDAVSLSNLQRQILFRTADIGRPKVEAGTEALKALNPGVQIE
                     SHNMRITATNALELIAGYDIVADGSDNFATRFLLNDACFFAKKVLVSAAVTEFEGQLA
                     TYKGHEPGAPCYRCLFPAPPPPGTVANCSETGVLGAAAGVMGSLQALEVLKEAAGLGT
                     GLSGKILTYKALSTEFRIARLAKDPACALCGTAPTITGLLCQG"
     gene            1533..>2112
                     /locus_tag="VNN98_05530"
     CDS             1533..>2112
                     /locus_tag="VNN98_05530"
                     /EC_number="4.1.1.49"
                     /inference="COORDINATES: protein motif:HMM:NF013461.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004612 - phosphoenolpyruvate
                     carboxykinase (ATP) activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006094 - gluconeogenesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate carboxykinase (ATP)"
                     /protein_id="HWM61591.1"
                     /translation="MTDTATDTSFGLGRHGFRNLKAVNFNLSAPALYEEAVKRGEGQV
                     ARCGPLVVRTGVHTGRSASDKFVVRDGLSESQVWWDNNKPMSEGHFDALHADMMAHAQ
                     GRELFAKDLFGGADLTHRISVRVVTEYAWHSLFVHQLLIRPTAEDLKSFDPEFTIIDL
                     PSFNADPARHGCASQTVIAVNFTKKMILIGGTS"
BASE COUNT          406 a          648 c          649 g          409 t
ORIGIN      
        1 gcgatagacg cggtggaagg cctgagtggt gagttcgttc aggctcttga cgatctgctg
       61 caccccagcc gcggtgttgg ccgcctgtgc caccgcgatt ttctggatgg cgtgctgata
      121 aagcgtgccg gtggcttcca gcttctccaa aaggtcggcg cggtgaatca gttctgtgat
      181 ggtgaccgtg ttgcgcgaca gaaattcggt cagcagccgg ctcatggtct ggcgggcgtg
      241 ataggaatac agatcctcgg gcttgaagca gggcagggcg tgcggcgcat cttcctgcgc
      301 cggcgcaagc ttcacctggt tgtgcccctc ctcgaaaatc ttgagagtga ggaaatcgcc
      361 ggtgtcgtca ttgtaggttt ctttcaccac cttgacgccg gtggcttttt cctcggccat
      421 cagggtttgg gccatggtga tggcgacgtc gcgcgaggcg acgatctcgt gcatcgtcca
      481 gccgcccttg gcgccaacgc ggcggaagac ctcgtaatgg atttcgcgtc ccatgccccg
      541 atgttgacgc aggtgattta agcggcggtt aaccctgaca caaaagcccg gtaatcgtgg
      601 gtgccgttcc gcacaaggcg caggccggat ccttggccag gcgggcgatg cggaattccg
      661 tgctaagcgc cttataagtc agaattttcc cagaaagccc ggtgcccagt ccggccgcct
      721 ccttcaacac ctccagcgcc tgcagcgatc ccatcactcc ggcagcggcc cccagcactc
      781 cggtttccga gcaattggcc acggtgccgg gcggcggcgg cgcgggaaac aggcagcgat
      841 agcagggagc gcctggttca tggcccttgt aggtggcgag ctggccctcg aactcggtca
      901 ccgccgccga caccaacacc ttcttcgcaa aaaaacaggc atcgttgagc aggaagcggg
      961 tggcgaaatt gtccgagccg tcggccacga tgtcatagcc ggcgatcaat tccagcgcat
     1021 tggtggcggt gatccgcatg ttgtgagatt caatttgaac tccgggattc aaggctttca
     1081 gcgcctcagt ccccgcctcc actttgggcc gcccgatgtc ggcggtgcga aacaggatct
     1141 ggcgctgcag gttggacagg ctgacggcat cgtcatccac cagaccgagt ttgccgatcc
     1201 ccgccgctgc caggtacagt gccacgggac tgcccagccc gccggcgccc acgaccaaca
     1261 cgcgagccgc gcggattttg ccttggccag ggccacccac ttcccgcagc accaggtggc
     1321 gggcatagcg ttccaattcg tcatcgctga gcatttgccg aattccttac ggccaagcgc
     1381 cggccgtgac aacgcgccgc ccaaggcttt cgcggccgca gcaataacat attgattaat
     1441 cacaataata ttccatgcgc ggccaaatga atacatttgt gacccgcagg cagggcggct
     1501 ataggaaagt ggaaactgcc ctgggacatt ccatgactga caccgcgact gacacgtcgt
     1561 ttggccttgg ccgccacggc ttccgcaatt tgaaagccgt gaacttcaat ctcagcgcgc
     1621 ccgcacttta cgaagaagca gtcaagcgcg gcgagggcca ggtggcccgg tgcggcccgc
     1681 tggtggtccg cacaggggtg cataccgggc gctcggccag cgacaagttc gtggtgcgcg
     1741 acgggctaag cgaaagccag gtctggtggg acaacaacaa gccgatgagc gagggccatt
     1801 tcgacgcgct gcatgccgac atgatggccc atgcgcaagg gcgcgagctg ttcgccaagg
     1861 acctgttcgg cggcgccgat ctaacccacc gcatcagcgt gcgggtggtc accgaatatg
     1921 cctggcattc gttgttcgtg caccagctgc tgatccggcc cactgctgaa gatttgaaaa
     1981 gtttcgatcc ggaattcacc atcatcgacc tgcccagctt caatgcggac ccggccaggc
     2041 atggctgcgc cagccagacc gtgatcgcgg tgaattttac caagaagatg atcctgatcg
     2101 gcggcacgtc tt
//
LOCUS       DATMDK010000288         3160 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1277094,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000288 DATMDK010000000
VERSION     DATMDK010000288.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3160)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3160)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3160
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1277094"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1064)
                     /locus_tag="VNN98_05535"
     CDS             complement(<1..1064)
                     /locus_tag="VNN98_05535"
                     /inference="COORDINATES: protein motif:HMM:NF024267.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS-domain containing protein"
                     /protein_id="HWM61592.1"
                     /translation="MSNQADIAAPAADWEDAAALLATLDSLRCAITIFDSAGRLLHAN
                     AHLNYLFRSFPPRQALIGRRYEELIRLEIAGGEIAPAALAGGVKSFIAQRLEQLTKNA
                     FAPRDVALTGHRVVEIKARRGKDGRTVLLWTDVTAARAQLIRLQEAVALSAEAFAFYD
                     ANDKLILANDLYAHLCGVQTLDQLMGKSFPEIAAMGAYSGRILLDETPEQWLERRLQN
                     HRTHAGAMTLRTNTGEAYLVRDRASPDGGRVMVFTDITDKFRAETALAEQEHALADSR
                     AQAEQQSSYLADLSSRLDQASASVDSAKTTLLRTMGHELKTPLNAILGFSELMATLAD
                     NLSPAQIREYAGLVHQGGNNL"
     gene            1328..3058
                     /locus_tag="VNN98_05540"
     CDS             1328..3058
                     /locus_tag="VNN98_05540"
                     /inference="COORDINATES: protein motif:HMM:TIGR00229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain-containing sensor histidine kinase"
                     /protein_id="HWM61593.1"
                     /translation="MAINPNKVADPRAQRRQFAAVQAAKAGVGAALCLAFYAMLGRPD
                     LAETVAFLGLVAPAILALLALTPVPLARLEQVGLAGFAVLIGYLAVLTGGVVSPLLVW
                     FALVPAEAALSGGRRAVVRAGIAAGAALLAVVGIEALGALPASRLMFPGALPLWEVYA
                     CSMLAALVQAVLIAAAAQDRQRAADAAAAEGAAMYRFLADNAMDLITRHSSDGRIRFA
                     SPAASALLGRLPDELVGQAMQSLVHPEDLNAVQAALMESSYHGRAGAAEVRLQHKDGN
                     FVWMEIRCRPAREHQGQPADIVAVTRDISERKLQEGALVEARDAALDANRAKSRFLAN
                     MSHELRTPLNAIIGFSEVMTREMFGPVGPRYQEYSRLIHESGGHLLELINSVLDMSKI
                     EAGKFELAEELFDLEETAQSAVRFLRLPAERASVALKLAVAPGARLVFADRRAIKQIL
                     VNLLSNGVKYTPPGGAVKVTARIMNEAGRGIEIIVSDTGTGIAKTDLARLGQPFEQVE
                     SAETRAKEGTGLGLALVKSMAAMHGGEAVLESTLGEGTTVTVWLPFAAVNAKGERLST
                     GKVLPFRAAS"
BASE COUNT          517 a          971 c         1115 g          557 t
ORIGIN      
        1 aggttgttgc cgccctgatg caccaggccg gcatattcgc ggatctgtgc cggggacaga
       61 ttgtccgcca aggtcgccat cagctcggaa aagcccagaa tggcgttcaa cggtgtcttc
      121 aattcatggc ccatggtgcg cagcagggtg gtcttggcgc tgtccacgct ggcgctggcc
      181 tgatccagcc gcgacgacag gtcggcgaga taggagctct gctgctcggc ctgggcgcgg
      241 ctgtcggcca gggcatgttc ctgttcggcc agcgcggtct cggcgcggaa cttgtcggtg
      301 atgtcggtaa agaccatgac gcggccgcca tcggggctgg cgcggtcgcg caccagatag
      361 gcctcgccgg tattggtgcg cagggtcatg gcgccggcat gcgtgcgatg gttttgcagg
      421 cggcgttcca gccattgctc cggcgtctcg tccagcagga tgcggccgct ataggcgccc
      481 atggcggcga tttcgggaaa actcttgccc atcaactggt ccagcgtctg cacaccgcag
      541 agatgggcgt agaggtcatt ggcgaggatc agtttgtcgt ttgcgtcgta gaaggcaaag
      601 gcttcggccg agagggcgac ggcttcctgc agccggatca actgagcgcg ggcggcggtg
      661 acgtcggtcc acaacagcac ggtgcggccg tccttgccgc ggcgagcctt gatttccacc
      721 acacgatgac ccgtcagcgc cacatcgcgc ggggcgaagg cattttttgt cagctgctcc
      781 aggcgctggg cgatgaagga tttgacgcca cccgccaatg cggcgggcgc gatctcgccg
      841 cccgcgattt ccagccggat caattcttca tagcggcgtc cgatcagcgc ctggcgcgga
      901 ggaaaagagc ggaagagata gttgagatgg gcattggcat ggagcaggcg gccggccgaa
      961 tcgaaaatgg tgatggcgca gcgcagggaa tccagcgtgg ccagcagcgc ggccgcgtct
     1021 tcccagtctg ccgcgggggc agcgatatct gcctgattgg acaaggccat ttctcttgat
     1081 tcggagccgg atcgcagcgc ggatcatgcg gcagcttgcg ttgcggattg gttaggaagg
     1141 cggcaatcac tgtgtacgga tgaagacggc agcttcgcgc ccgagcccga atcgcgccat
     1201 ctttgctaac caaggatgaa tcccaatcct tgtggaaaac tgaacggagc agggcgcgct
     1261 tcagctttcg ttaagcctgc gggacgagac tgcggccggg actgtaattg gggcgcaaca
     1321 aagcttaatg gcgattaatc cgaacaaggt tgccgacccc agggcgcagc gccgccagtt
     1381 cgcagcggtg caggccgcca aggccggtgt gggcgcggcc ttgtgcctgg ccttttacgc
     1441 catgctcgga cgccccgacc tcgccgagac cgtcgccttc ctgggactgg tggcgcccgc
     1501 tatcctggcg ctgctggcct tgaccccggt tccgcttgcc cgcctggaac aggtggggct
     1561 tgccggcttc gcggtcctga tcggttatct ggcggtgctg accggtggcg tggtgtcgcc
     1621 gctgctggtg tggttcgcgc tggttcccgc ggaggcggcg ctgtccggcg gacggcgtgc
     1681 cgtggtgcgc gccggaatag ccgccggtgc ggcgctgctg gcggtggtgg gaatcgaagc
     1741 gctgggggcg ctgcccgcgt cgcggctgat gttccccggc gccttgccgc tatgggaggt
     1801 ttatgcctgt tcgatgctgg ccgcgctggt gcaggcggtg ctgatcgccg ccgccgccca
     1861 ggaccgccag cgcgccgccg acgcggccgc cgcggaaggc gcggcgatgt accggttcct
     1921 ggccgacaat gcgatggacc tgatcacccg ccattcctcc gacgggcgca tccgcttcgc
     1981 cagccccgcc gcttcggcgc tgctgggacg gctgccggat gagctcgtcg gccaggcgat
     2041 gcaaagcctg gtgcatcccg aagacctgaa tgcggtgcag gcggcgctga tggagtccag
     2101 ctatcacggc cgcgccggtg cggccgaagt gcggctgcaa cacaaggacg gaaatttcgt
     2161 ctggatggaa atccgctgcc gcccggcgcg cgaacatcag ggccagcctg ccgacatcgt
     2221 ggcggtgacg cgcgacatct ccgagcgcaa gctgcaagag ggcgctttgg tggaggcgcg
     2281 cgatgccgcg ctggacgcca accgcgccaa atcgcgcttc ctggccaata tgagtcacga
     2341 actgcgcacg ccgctgaacg ccattatcgg tttttcagaa gtgatgacgc gggaaatgtt
     2401 cggaccggtc gggccgcgct atcaggaata ttcccgcctg atccatgaat cgggcggcca
     2461 tctgctggag ctgatcaact cggtgctgga catgtccaag atcgaggccg gcaagtttga
     2521 gctggccgag gaactgttcg acctggagga gaccgcgcaa agcgccgtgc gcttcctgcg
     2581 gcttccggca gagcgggcca gcgtggcgct gaaactggcc gtggcgccgg gcgcccggct
     2641 ggtcttcgcc gaccgccgcg ccatcaaaca gatcctggtc aatcttctgt ccaatggcgt
     2701 gaaatacacc ccgccgggcg gggcggtgaa agtgacggcg agaatcatga acgaagcggg
     2761 gcgcggcatc gagattatcg tctcggacac cggcaccggc attgccaaga cggacctggc
     2821 gcggctgggc caacccttcg agcaggtgga gagcgccgaa acccgcgcca aggaaggcac
     2881 cgggctgggg ctggcgctgg tcaaatcgat ggcggcgatg catggcggcg aggcggtgct
     2941 ggaatcgacc ttgggcgaag gcaccaccgt cacggtgtgg ctgcccttcg ccgcggtgaa
     3001 cgccaagggc gagcgtttaa gcaccggcaa ggttctgccc ttccgcgcgg cctcctgata
     3061 caagcgtcgc atgacgccac cgccccgcct caaagccgga atctttgtgc gcgccctgac
     3121 gcgccgcgtt gaggtggcgg gggctgcggc ctttgtggtg
//
LOCUS       DATMDK010000289         2403 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_604615,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000289 DATMDK010000000
VERSION     DATMDK010000289.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2403)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2403)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2403
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_604615"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1494
                     /locus_tag="VNN98_05545"
     CDS             <1..1494
                     /locus_tag="VNN98_05545"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: protein motif:HMM:NF019174.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase"
                     /protein_id="HWM61594.1"
                     /translation="MLASRQPMWVWWGPELINFYNDAYLPIIGDKHPAALGRRAHKVW
                     AEIWDQIRERVAAAMAGESSYAEAEMMLMRRGGYPEESYYTFSFSPVPEEDGSIGGIV
                     CANSEDTDRVIGARRLALLREIASRTWEADTVADVYALAARALASDPRDMPFALIYHF
                     EEDGAHATLCGQSGIAPGHAAAPDSIALDGSAPWPLSDVARGGMRRQVMRLGEKFGAL
                     PKGPWNDAPQEALVLPLATSADAVPRGVLILAANPYRRRDDDSFENFAALVARQIASA
                     AVNIEAYEAERDRAKSADSLALEIEHRRRIERHQNLLLDELNHRVKNTLATVQAMAIQ
                     TLRGVDLPARDAFLARLFALSSQHDLLTLDNWEGASFEGVVRRALRPWRENEHARFAV
                     GGPAVHLDPKQALALGMAFHELATNAAKYGAFSNETGMVHVSWTVEPGLLKLRWEERG
                     GPAVCEPQRRGFGLRLVEYGLAREISGKVSLDFRPEGLLCEWDMKLF"
     gene            1505..1876
                     /locus_tag="VNN98_05550"
     CDS             1505..1876
                     /locus_tag="VNN98_05550"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HWM61595.1"
                     /translation="MGVRVLIVEDEIVVALFLEDLLTEFGYEVAGVAGQLDDAMARAP
                     DYDVAVLDVHLNGRNVFDFADTLAARGTPFVFATGYGERGIPERHRARPVLQKPFQPG
                     DLKQALAQIVAERGERKTSAA"
     gene            complement(1873..>2403)
                     /locus_tag="VNN98_05555"
     CDS             complement(1873..>2403)
                     /locus_tag="VNN98_05555"
                     /inference="COORDINATES: protein motif:HMM:NF024109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HWM61596.1"
                     /translation="VIGVSFGGMVAQELALRHPGKVRRLILCCTAAGGAGGSSYPYHS
                     LPKMSVTDLAALKVKISDSRHDEAWGRTNPQAYKMRCALAAADPYADEPGHRQGAARQ
                     IAARAGHDSWDRLPSIGCPVLVMGGRHDGTAEPKVVTALADRIPGAQLRFFEGGHLFM
                     LEDRTAYPAMAEFLGA"
BASE COUNT          405 a          753 c          823 g          422 t
ORIGIN      
        1 atgctggcct cgcgccaacc catgtgggtg tggtgggggc ccgagttgat caatttctac
       61 aacgacgcct atctgccgat catcggcgac aaacatcccg ccgcactggg ccggcgggcg
      121 cacaaggtgt gggcggaaat ctgggaccag atccgggagc gcgtcgccgc cgccatggcg
      181 ggcgagtcca gttatgccga agccgagatg atgctgatgc gccggggtgg ctacccggaa
      241 gaaagctatt acaccttctc cttttcgccg gttcccgaag aagacggcag tatcggcggc
      301 attgtctgcg ccaatagcga ggataccgac cgggtgatcg gggcgcggcg gctggcgctg
      361 ttgcgtgaga tcgcgtcacg cacctgggag gctgacacag tggcagacgt ctatgcgctg
      421 gcggcgcggg cactggccag tgatccgcgc gacatgccct ttgccctgat ctaccatttc
      481 gaggaggacg gcgcgcacgc cacgctgtgc gggcagagcg gcattgcgcc gggccatgcg
      541 gcggcgcccg acagcatcgc cctggacggc agtgcgccct ggccgctcag cgacgtggcg
      601 cgcggcggca tgcgccgcca ggtgatgcgg ctgggcgaga agttcggcgc cttgcccaaa
      661 ggcccgtgga acgatgcccc gcaggaggcg ctggtgctgc cgctggcgac cagcgcggat
      721 gccgtgccgc gcggcgtgct gatcctggcc gccaatccct atcgccgccg cgacgatgac
      781 agtttcgaga attttgcggc gctggtggcg cgccagatcg cttcggccgc ggtcaatatc
      841 gaagcctatg aggccgagcg cgatcgcgcc aagtcggccg acagcctggc gctggagatc
      901 gagcatcgcc gccgtatcga gcgtcaccag aacctgctgc tggacgaact caatcaccgg
      961 gtgaagaaca ccttggccac ggtgcaggcg atggcgatcc agacgctgag aggcgtggac
     1021 ctgccggcgc gcgacgcctt cctggcgcgc ctgtttgcgt tgtccagcca gcacgacctt
     1081 ctcactctgg acaattggga aggcgcctcg ttcgaaggtg tggtgcgccg tgccctgcgg
     1141 ccctggcgcg agaacgagca tgcacgcttt gcggtcggag gaccggcggt gcatctggac
     1201 cccaagcagg cgctggcgtt gggcatggcg ttccacgaac tggccaccaa tgccgcgaaa
     1261 tacggcgctt tttcgaacga aaccggcatg gtgcatgtca gttggaccgt cgagccgggc
     1321 ctgctgaagc tgcgctggga agaacgcggc ggaccggcgg tttgcgagcc tcagcgcagg
     1381 ggctttggcc tgcgccttgt ggagtatgga ttggcgcgcg aaatttccgg caaggtgagt
     1441 ttggacttcc ggcctgaagg cctgttgtgc gaatgggata tgaaactgtt ttaaggaaaa
     1501 gattatgggc gtgcgcgtgt tgatcgtgga agacgaaatc gtcgtcgccc tgttcctgga
     1561 agatctcctg accgagttcg gttatgaggt ggcgggtgtc gccggccagt tggatgatgc
     1621 catggcacgc gcgcccgatt acgacgtggc ggtgctggac gtgcatctca atggccgcaa
     1681 tgtgttcgat ttcgccgaca cgctggcggc gcgcggcacg ccttttgtct tcgccaccgg
     1741 ttatggcgaa cgcggcattc ccgaacgcca ccgcgcccgg cccgtgctgc agaagccttt
     1801 tcaaccgggt gacctgaagc aggcgttggc gcagatcgtg gccgagcgtg gggagcgcaa
     1861 aaccagcgct gcctaggcgc ccagaaattc cgccatcgcc ggatacgccg tcctgtcttc
     1921 cagcatgaag agatggccgc cttcgaaaaa gcgcagctgc gccccgggga tgcggtccgc
     1981 cagcgccgtc accactttgg gttcggcagt gccgtcatgg cgcccaccca tcaccagcac
     2041 gggacagcca atcgacggca accggtccca gctgtcgtga ccggcgcgcg ccgcgatctg
     2101 gcgggcggcg ccttgccgat gtcccggctc atccgcatag ggatcggcgg cggccagcgc
     2161 gcagcgcatt ttgtaggcct gcggattggt ccgcccccag gcttcgtcat ggcggctatc
     2221 ggagattttc actttcagcg ctgccagatc cgtgacgctc atcttcggca ggctgtgata
     2281 gggataagac gatccgcccg cgccgcccgc cgccgtacag cacaggatca gccgccgtac
     2341 cttgccggga tggcgtagcg ccaattcctg cgccaccatg ccgccgaagg agacgccgat
     2401 gac
//
LOCUS       DATMDK010000290         3343 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1052175,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000290 DATMDK010000000
VERSION     DATMDK010000290.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3343)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3343)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3343
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1052175"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1077)
                     /gene="obgE"
                     /locus_tag="VNN98_05560"
     CDS             complement(<1..1077)
                     /gene="obgE"
                     /locus_tag="VNN98_05560"
                     /inference="COORDINATES: protein motif:HMM:NF008955.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase ObgE"
                     /protein_id="HWM61597.1"
                     /translation="MRFLDVAKVYAQSGAGGNGCIAFRREKFIEYGGPYGGDGGRGGD
                     VIAEAVESLNTLIDYRFQQHVKAKSGEGGKGKVMTGAGGDDAIMKVPVGTQIYEEDDE
                     TLIADLANVGARVRLLRGGNGGFGNHHFKSATNQAPDFALPGQPAEERTFILKLKLIA
                     DAGLIGMPNAGKSTFLARVSAARPKIADYPFTTLEPQLGLVKIDETDFVVADLPGLIE
                     GAHEGVGLGDRFLGHAERCASILHLIDGTGDQIAKTYKIIRAELIAYGHGLAEKTEIV
                     ALNKVDAIPEKDIAKKRATLEKACGHKVHLISGVSGEGIAAVLRAMAREVNQRRLYRA
                     EQAEFGRAAPVPRSRSERQTVNFNA"
     gene            complement(1089..1607)
                     /locus_tag="VNN98_05565"
     CDS             complement(1089..1607)
                     /locus_tag="VNN98_05565"
                     /inference="COORDINATES: protein motif:HMM:NF024698.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HWM61598.1"
                     /translation="MCILESDRLILRPPRPRDIHSMTVWLSDYDVARMTSRVPHPYSE
                     GDAESFLALAPKHRFVIQRKRDEVFLGMVGLHADNGYEFGYWLGKPFWGFGYATEGAH
                     RLVRYAFEALGLESVHAGWFHDNPASGHVLAKLGARHNGSAMRDCRARGRAVLCHDML
                     LTQADFLRKQAA"
     gene            complement(1719..2015)
                     /gene="rpmA"
                     /locus_tag="VNN98_05570"
     CDS             complement(1719..2015)
                     /gene="rpmA"
                     /locus_tag="VNN98_05570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020044877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L27"
                     /protein_id="HWM61599.1"
                     /translation="MAHKKAGGSSRNGRDSNPKMLGVKLFGGEAVAGGNVIIRQRGTK
                     FYAGEGVGMGKDHTLFALRNGRVSFKTGYKRRTFVSVLPAQDSNMNPAVKIAAE"
     gene            complement(2028..2336)
                     /gene="rplU"
                     /locus_tag="VNN98_05575"
     CDS             complement(2028..2336)
                     /gene="rplU"
                     /locus_tag="VNN98_05575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007115464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000311 - plastid large ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L21"
                     /protein_id="HWM61600.1"
                     /translation="MYAVVRTGGKQYKVAKDTVLKVETLAGDVGSKLDLDVLMLGGDT
                     PKIGAPLVAGASVQCEIVEHGQGEKVIAFKKKRRKNTHRKRGHRQHFTTVKVLGITAG
                     "
     gene            complement(2507..3070)
                     /locus_tag="VNN98_05580"
     CDS             complement(2507..3070)
                     /locus_tag="VNN98_05580"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61601.1"
                     /translation="MRITKQILVRRWAITTILAGCVFAVLAWSDLRLKTLSGFGTADL
                     QGFFTAAQYRQAFLVWPSLYAVRAGFNWGLDYLLMPLYAAAFFYSGIIAREAFAPRPG
                     RARRILTLLAAVPIAGAVLDAAENGLELAMMLSGASDRLAGIAFMVSNAKWMALTVGV
                     ALLLGAVLAQVQEHRQRRLKSSSPPRA"
     gene            3101..>3343
                     /locus_tag="VNN98_05585"
     CDS             3101..>3343
                     /locus_tag="VNN98_05585"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61602.1"
                     /translation="MRSAPPRTISDILYNFHWVVPGEAARAMQAWAGGLRPFLKQRGI
                     AAIINLRGRNDDLAWWKQETAIAKSAGIAHLDAMLDS"
BASE COUNT          624 a         1080 c         1011 g          628 t
ORIGIN      
        1 cgcattgaaa ttgacggttt gccgctcact gcggctgcgc ggcacgggtg cggcgcggcc
       61 gaactccgcc tgctcggcgc ggtacaggcg gcgctgattg acctcgcgcg ccatcgcccg
      121 gagcaccgcg gcgatgcctt cgccggacac acccgaaata agatggacct tgtggccgca
      181 ggccttttcc agggtggcgc gcttcttggc gatatccttt tcaggaatcg catccacctt
      241 gttcagtgcg acgatctcag tcttttcggc caggccatga ccgtaagcga tcagttcggc
      301 gcggatgatc ttgtaggttt tggcgatctg atcgccggtg ccgtcgatca ggtgcaggat
      361 agaagcgcag cgctcggcat ggcccagaaa acggtccccc agccccacgc cttcatgcgc
      421 gccttcgatc agccccggca ggtcggccac cacaaaatcg gtctcgtcga ttttcaccag
      481 acccagctgc ggttccaggg tggtgaaggg atagtcggcg atcttgggcc gcgccgccga
      541 aacgcgggcc aggaaggtgg atttgccggc attcggcatg ccgatcaacc cggcatcggc
      601 gatcagcttg agcttgagga tgaaggtcct ttcctcggcc ggttgtccgg gcagggcgaa
      661 atcgggcgcc tggttggtgg cgctcttgaa atggtgattg ccgaagccgc cattgccgcc
      721 gcgcagcagc cgcacacgcg cgcccacatt cgccagatcc gcgatcaggg tttcatcgtc
      781 ttcttcatag atctgagtcc cgaccggcac cttcatgatg gcgtcgtcgc cgccggcgcc
      841 ggtcatcacc ttgcccttgc cgccttcgcc gctcttggcc ttcacatgct gctggaagcg
      901 gtagtcgatc agggtgttga gactttccac cgcttcggcg atcacatcgc cgccgcgccc
      961 gccgtcgccg ccatagggcc cgccatattc gatgaacttc tcacgccgga acgcgataca
     1021 gccattcccg cccgcaccgg actgggcata aaccttcgcg acatcaagaa agcgcattgg
     1081 agcctctgtt atgcagcctg ttttcgcagg aaatcggcct gcgtcaacag catgtcatgg
     1141 cacaaaaccg ccctgccccg ggcccggcaa tcgcgcatcg ccgagccgtt atggcgcgcg
     1201 cccagcttgg ccaggacatg gccagatgcc ggattatcgt ggaaccagcc ggcatggacg
     1261 ctttccaagc ccagagcctc gaaggcgtag cgcaccaggc ggtgtgcgcc ttcggtggca
     1321 taaccaaagc cccagaacgg cttgcccagc caatagccga actcataccc gttatcggca
     1381 tgcagcccca ccatccccag gaacacctcg tcgcgcttgc gctggatgac gaagcggtgc
     1441 ttcggcgcca gcgccaggaa gctttccgca tccccttcgc tgtaaggatg cggcacccgt
     1501 gacgtcatgc gcgccacgtc atagtcgctc agccacaccg tcatgctgtg aatatcgcga
     1561 ggcctgggcg gccgcaggat caatctatcg ctctccagaa tgcacatgtc atcccccgca
     1621 aatccgcatc tcgcgaggaa taaaaaaggg agatggcgga ccatctccct cgcacataat
     1681 gggccgccaa tttcttggcg gcctatgtct tcagccgcct attctgccgc gatcttcacc
     1741 gccggattca tgttggaatc ctgggccgga agcacggaca cgaaggtacg gcgcttgtag
     1801 ccggtcttga acgagacacg gccgttgcga agcgcgaaaa gggtatgatc cttgcccatg
     1861 ccaacgcctt cgccggcata gaatttggtg ccgcgctggc gaatgatcac gttgccgccg
     1921 gcgacagctt cgccgccgaa cagcttgacg cccagcatct tgggattgga gtcgcggccg
     1981 ttgcgcgaag aaccgcctgc ttttttatgt gccataggtc tggtccttta accggcagtg
     2041 atgccgagca ccttcaccgt ggtgaagtgc tggcggtggc cgcgcttgcg atgggtgttc
     2101 ttgcggcgct ttttcttgaa ggcgatgact ttttcgccct ggccgtgctc gacgatctcg
     2161 cactgcaccg aggcgccggc gaccagcggg gcgccgatct tgggcgtatc gccgcccagc
     2221 atcaggacat cgagatccag tttggagcca acatcgcccg ccagggtttc gaccttcagg
     2281 acggtgtcct tggccacttt atactgtttt ccgccggtgc ggacgaccgc atacatggtc
     2341 taaacctttg aaaataattg tttttctggg gaagtgagtc ccccggagag cggcggaata
     2401 tacgcaaaga cgccgaaggg tcaaggacct gttttggaag gtcatttttg ccccctctgg
     2461 ccttcgcatc gacaagcgat gctacggcca tctccccccg cccgcgctac gcgcgcgggg
     2521 gagaagagct tttaaggcgc cgttgccggt gttcctggac ttgggccagc accgccccca
     2581 gcagcagcgc cacgcccacc gtaagggcca tccacttggc gttggaaacc atgaaagcga
     2641 tgcccgccag ccggtcgctg gcgcccgaca gcatcatggc cagctccaat ccgttctccg
     2701 ccgcgtccag cactgcgccg gcgatgggca ccgccgccag cagggtgagg atgcggcgcg
     2761 ccctgccggg ccggggtgcg aaagcctcgc gggcaatgat gccggaatag aagaaggcgg
     2821 cggcatagag cggcatcaaa agataatcca ggccccagtt gaagccggcg cgcacggcat
     2881 agagcgacgg ccaaaccagg aaggcctggc ggtattgcgc ggcggtgaaa aaaccttgca
     2941 ggtcggcggt gccgaagccc gacagggtct tcagccgcag gtccgaccag gccagcaccg
     3001 caaagacgca accggccagg atggtcgtga tggcccagcg gcggaccagg atctgtttgg
     3061 tgatgcgcat aagcgttccg aaatatgcta gttccattct atgcgatcgg ccccaccccg
     3121 aacaatcagc gacattctct acaatttcca ctgggtggtg cctggggaag cggcgcgggc
     3181 catgcaggcc tgggccgggg gcctgcgccc gtttctgaag cagcgcggca tcgccgccat
     3241 catcaacctt cgcggccgca acgacgatct cgcctggtgg aaacaggaga ccgccatcgc
     3301 caaaagcgcc ggcatcgccc atctggatgc catgctggat tcg
//
LOCUS       DATMDK010000291         2711 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2196476,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000291 DATMDK010000000
VERSION     DATMDK010000291.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2711)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2711)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2711
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2196476"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1703)
                     /locus_tag="VNN98_05590"
     CDS             complement(<1..1703)
                     /locus_tag="VNN98_05590"
                     /inference="COORDINATES: protein motif:HMM:NF012398.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HWM61603.1"
                     /translation="MSVASVLQTMEYGPAPESPAVALAWLAEHNGSFGLYISGAWKES
                     SARFDSVNPATGKTLASLADASAADVDAAVKAARAAFGNWSKLAGHVRARYLYALARA
                     IQKHARLFAVLETLDNGKPIRETRDIDIPLAIRHFYHHAGWAQLLDSEMPDHLPLGVV
                     GQVIPWNFPLLMLAWKIAPALACGNTVVLKPAEDTSLTALLFAEICSEIGLPPGVVNI
                     VTGAGETGRAIVEHPGIDKIAFTGSTEVGRLIRIATAGTGKKLTLELGGKSPFIVFED
                     ADLDAAVEGAVDAIWFNQGQVCCAGSRLLMQESIADKLLVKLRARMETLRVGDPLDKS
                     TDIGAIVSPGQRAQIDAKVKAGVAAGAVLFQPKAACPEGCFYPPTLLSNVEPASVVVQ
                     EEIFGPVLVAMTFRTPAEAAQLANNTRYGLAASIWTENINLALDIAPKIKAGVVWINC
                     TNQFDASAGFGGYRESGFGREGGREGLVEYLKRKAKPVPKPAPARAIKKTKADLPLLA
                     GIDRTAKLFIGGKQARPDGGYSRAILSPAGAVLAQVGDGNRKDIRNAVEAAAKAESWS
                     TT"
     gene            complement(1717..>2711)
                     /gene="deoC"
                     /locus_tag="VNN98_05595"
     CDS             complement(1717..>2711)
                     /gene="deoC"
                     /locus_tag="VNN98_05595"
                     /EC_number="4.1.2.4"
                     /inference="COORDINATES: protein motif:HMM:TIGR00126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004139 - deoxyribose-phosphate aldolase
                     activity [Evidence IEA];
                     GO_process: GO:0009264 - deoxyribonucleotide catabolic
                     process [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="deoxyribose-phosphate aldolase"
                     /protein_id="HWM61604.1"
                     /translation="IQPLNREKAPDIGPSDGRNPGIAFDGDVIDSLRVNRSAAERRVA
                     TLPGRRTIKKEWQAAWLLKAIACMDLTTLAGDDTPGRVRRLCAKARQPVRQELLDAMG
                     VGDIGLTTGAVCVYHNMIATAVKALDGTDIPVAAVSTGFPAGLTPLHLRLQEIKESVA
                     AGAREIDIVIDRSHALTGNYRAVYDEMKAFREACGLAHVKAIIGAGDLGTLTNVARAS
                     MACMMAGADFIKTSTGKEGVNATLPFALIMCRMIREYETMTGWKVGFKPAGGIATAKD
                     AMNYQFVMKEELGLPWLQPGLFRLGASSLLTDIERQLEHFVSGHYSAAHRHPMA"
BASE COUNT          456 a          853 c          907 g          495 t
ORIGIN      
        1 gtcgtcgacc agctttccgc cttggcagcg gcttccaccg cattgcggat gtccttgcgg
       61 ttgccgtcac ccacttgcgc cagcacggcg ccggcgggcg aaaggatggc acggctataa
      121 ccgccgtcgg gacgggcctg cttgccgccg atgaacagct tggcggtgcg gtcgatgccg
      181 gccaacaagg ggaggtcggc tttggttttc ttgatcgcac gcgccggtgc cggcttgggc
      241 acgggctttg ccttgcgttt gagatactcc accagccctt cgcgcccgcc ttcgcggccg
      301 aacccggatt cacgatagcc gccaaatccg gcggaagcat cgaactggtt ggtgcagttg
      361 atccacacca cgcccgcctt gatcttgggc gcgatatcga gcgcgaggtt gatattctcg
      421 gtccagatgc tggccgccag cccgtaacgc gtgttgttgg ccagctgagc ggcttcggcc
      481 ggggtgcgga aggtcatcgc caccaagacg ggtccgaaga tttcttcctg caccaccaca
      541 gaggccggtt cgacattgga cagcaaggtc gggggataga aacaaccttc cgggcaagcg
      601 gctttgggtt ggaacagaac cgcgccggcg gcaacaccgg ccttcacctt ggcgtcgatc
      661 tgggcgcgct gaccgggcga gacgatggcg ccgatatcgg tgctcttgtc gagcggatcg
      721 cccacccgca gcgtttccat gcgggcgcgc agcttgacca gcagcttgtc ggcaatgctt
      781 tcctgcatca gcagccgcga gccggcgcag cagacctggc cctggttgaa ccagatcgcg
      841 tccaccgcgc cttcaaccgc ggcgtcgagg tcggcgtctt caaaaacaat gaagggcgac
      901 ttgccgccca actccagggt cagcttcttg ccggtgccgg cggtggcgat acggatgagg
      961 cggcccactt cggtggagcc ggtgaaggcg atcttgtcga tgccgggatg ttcgacgatc
     1021 gcccggccgg tttcgccggc gccggtcacg atattgacca cacctggggg caggccgatt
     1081 tcgctgcaaa tctccgcgaa caacagcgcc gtcaggctgg tgtcttcggc cggcttcagc
     1141 accaccgtat tgccgcaggc cagcgccggg gcgatcttcc aagccagcat cagcaagggg
     1201 aagttccacg ggattacctg gcccaccaca cccagcggca gatgatcggg catctcgctg
     1261 tccagcagct gggcccagcc ggcatggtga tagaaatgcc ggatcgccaa gggaatatcg
     1321 atatcgcgcg tctcgcggat cggcttgcca ttgtccagcg tctccagcac cgcgaacagg
     1381 cgggcatgct tctggatcgc ccgggccagg gcatagagat agcgcgcccg gacatggccg
     1441 gcgagtttcg accagttgcc gaaggcggca cgcgccgctt tcaccgccgc atcgacatcc
     1501 gcagctgagg cgtccgccag gctggcgagt gtcttgcccg tggcgggatt gacgctgtcg
     1561 aagcgggcgc tggactcttt ccaggcgcca ctgatgtaca ggccgaagct gccattgtgt
     1621 tcggccagcc atgccagcgc cacggcgggg ctttcgggag cggggccgta ctccatagtc
     1681 tgcaaaaccg acgcgacgct catggggaat gttctttcaa gccatcggat gacggtgggc
     1741 ggcggaataa tggccgctca caaaatgttc gagctggcgc tcgatgtcgg tgagaaggct
     1801 ggaggcgccc aggcggaaca gaccgggctg cagccagggc aggcccaatt cctccttcat
     1861 cacgaactga tagttcatcg cgtccttggc ggtggcgatg ccgcccgccg gcttgaagcc
     1921 cactttccag ccggtcatcg tctcatattc gcggatcatg cggcacatga tcagcgcgaa
     1981 gggcaaagtg gcgttgacgc cttccttgcc ggtggaggtc ttgatgaagt ccgcgcccgc
     2041 catcatgcac gccatggagg cgcgcgccac attggtcagg gtgcccagat cgccggcgcc
     2101 gatgatcgcc ttgacatgtg ccaggccgca ggcttcgcgg aaggctttca tttcgtcata
     2161 gacggcgcgg taattgccgg tcagggcgtg gctgcggtcg atgacgatgt cgatttcccg
     2221 ggcgccggct gccaccgatt ccttgatttc ctggaggcgc agatgcagcg gcgtcaggcc
     2281 ggcgggaaaa ccggtggaca cggcggcgac gggaatatct gtcccgtcca gcgccttcac
     2341 cgccgtcgcg atcatattgt gatagacgca gaccgcgccg gtggtgaggc cgatatcccc
     2401 cacccccatg gcgtcgagca gttcctggcg taccggctgg cgcgctttgg cgcagagacg
     2461 gcggacccgg cccggcgtgt cgtcgcccgc cagggtggtg agatccatgc aggcgatggc
     2521 cttcagcagc caggcggcct gccattcctt cttgatggtg cggcggccgg gaagcgtggc
     2581 gacccggcgc tcggcggcgc tgcggttgac gcggagggag tcgatgacgt cgccgtcaaa
     2641 ggcgatgccg ggattgcggc catcggaagg accgatatcc ggcgccttct cgcggttaag
     2701 tggctgaatt t
//
LOCUS       DATMDK010000292         4317 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2879479,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000292 DATMDK010000000
VERSION     DATMDK010000292.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 4317)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4317)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4317
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2879479"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..188
                     /locus_tag="VNN98_05600"
     CDS             <1..188
                     /locus_tag="VNN98_05600"
                     /inference="COORDINATES: protein motif:HMM:NF015431.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="LysR substrate-binding domain-containing
                     protein"
                     /protein_id="HWM61605.1"
                     /translation="GIGWGNMPKPMVNEDLKRGRLVALKIETPGELAYPFHTLYRSDA
                     PPGPAASWLMERLAFAA"
     gene            287..535
                     /locus_tag="VNN98_05605"
     CDS             287..535
                     /locus_tag="VNN98_05605"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61606.1"
                     /translation="MAAKKKKKAKKAVKAKKAPAKKSSKKSAKKSKKVAKKAKKPAAK
                     KAKKKVVKAAAKKAPAKPAAAAPAPSEAPPAVPPGITF"
     gene            complement(602..988)
                     /gene="msrB"
                     /locus_tag="VNN98_05610"
     CDS             complement(602..988)
                     /gene="msrB"
                     /locus_tag="VNN98_05610"
                     /EC_number="1.8.4.12"
                     /inference="COORDINATES: protein motif:HMM:TIGR00357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0033743 - peptide-methionine (R)-S-oxide
                     reductase activity [Evidence IEA];
                     GO_process: GO:0006979 - response to oxidative stress
                     [Evidence IEA];
                     GO_process: GO:0030091 - protein repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (R)-S-oxide reductase MsrB"
                     /protein_id="HWM61607.1"
                     /translation="MTDTKTKTERQLTPEQHRVLRERGTERPGSSPLNQEKRPGEFQC
                     AGCGAELFDAHTKFDSGTGWPSFWDTKPGAVTTVTDTSHGMVRTEFNCANCGGHLGHV
                     FNDGPGPTGLRYCTNGCALDFKPDTK"
     gene            complement(1033..1578)
                     /locus_tag="VNN98_05615"
     CDS             complement(1033..1578)
                     /locus_tag="VNN98_05615"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61608.1"
                     /translation="MMKHRLLATLLLVSSAVAAEDPASAVNAFYAVYNGQHAQGGGIP
                     DATGRLRYAPVLSPRLNKQLADAAAAQVRLTAKVKNAVPPILEGDIFSSLFEGATEWK
                     AGACQGDAKTARCPVALSYVTAPMQGRKAEKPVNWNDTLLLVNTAQGWKVDDVIYDAG
                     FAFGNTGRLSGMLAMVMASNQ"
     gene            complement(1578..2000)
                     /gene="mscL"
                     /locus_tag="VNN98_05620"
     CDS             complement(1578..2000)
                     /gene="mscL"
                     /locus_tag="VNN98_05620"
                     /inference="COORDINATES: protein motif:HMM:NF010557.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008381 - mechanosensitive monoatomic ion
                     channel activity [Evidence IEA];
                     GO_process: GO:0034220 - monoatomic ion transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="large conductance mechanosensitive channel
                     protein MscL"
                     /protein_id="HWM61609.1"
                     /translation="MALIDEFKKFAVRGNVVDLAVGVIIGASFTGIVNSLVNDIIMPP
                     IGLALGGVDFANFFVVLKGDRAVDTLAAAKIAKDVTINYGLFINAIINFLIVAFALFM
                     LLRQLNKLTAPPPAPEVAPAPPEDVLLLREIRDSLKNR"
     gene            complement(2033..2428)
                     /locus_tag="VNN98_05625"
     CDS             complement(2033..2428)
                     /locus_tag="VNN98_05625"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61610.1"
                     /translation="MFFHGIFLPWVRRAGAWLFWPALAVVTWGELTPHPPALPGPLAW
                     DKLEHFTAYFGLTLLASLGWGLRRSLVWILLGMVALGGALEILQNMVGRDGEWGDFAA
                     NDLGALTGLAVAVVYLAIPRRLVEAPRRD"
     gene            2757..2954
                     /gene="rpmI"
                     /locus_tag="VNN98_05630"
     CDS             2757..2954
                     /gene="rpmI"
                     /locus_tag="VNN98_05630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003166435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L35"
                     /protein_id="HWM61611.1"
                     /translation="MSKMKTKSGAKKRFKFTKTGKIKTHQVGKRHRLINNSPARTRDL
                     RGTAVLSASETQRVKRWMPYA"
     gene            2967..3317
                     /gene="rplT"
                     /locus_tag="VNN98_05635"
     CDS             2967..3317
                     /gene="rplT"
                     /locus_tag="VNN98_05635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013946005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L20"
                     /protein_id="HWM61612.1"
                     /translation="MSRTPRSVPSRARRNKVLKQAKGMRGRRKNNITTANAAVDKSLQ
                     HNYIGRKERKRNFRALWIQRINAAVREHGLTYSRFIAGLAGAGIEIDRKVLSDLAIHE
                     PSAFKALVDQASKG"
     gene            3432..>4317
                     /locus_tag="VNN98_05640"
     CDS             3432..>4317
                     /locus_tag="VNN98_05640"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: protein motif:HMM:NF013568.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0000049 - tRNA binding [Evidence IEA];
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0004826 - phenylalanine-tRNA ligase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_process: GO:0006432 - phenylalanyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit alpha"
                     /protein_id="HWM61613.1"
                     /translation="MTDIAALQSDILAQIVACADEAALEAVRVATLGKKGSVSALLAT
                     MGKLDPEERKVQGPRFNGLRDTVTAAIGARKAELADMALDARLAAETLDVTLPARPEN
                     SGTVHPISQVLDEVVAVFAELGFGVAEGPDVEFDDYNFTKLNIPPDHPARQMQDTFYV
                     APQADGSSHVLRTHTSPVQVRTMLNTKPPIRIISPGRTYRVDSDATHSPMFHQVEALV
                     VDEGIHLGHLKWTVEQFCKAFFEIDQIELRARPSFFPFTEPSLEWDMRCDRSVPGKIT
                     FGSGNDWLELGGSGMVHRK"
BASE COUNT          907 a         1376 c         1309 g          725 t
ORIGIN      
        1 ctggcatcgg ctggggcaac atgcccaagc cgatggtgaa tgaagacctc aagcgcggcc
       61 ggctggtggc gctgaagatc gagacgccgg gcgaactggc ctatcccttt cacaccctct
      121 atcgcagcga cgccccgccc ggccccgccg cgtcatggct gatggagcgg ctggccttcg
      181 ccgcataagc cgcaaaagaa atcgaatgcg gaacgaacac agtgctcgcg cattggcgcg
      241 aaggcgcgta gagtttttgt gtcacatcaa ccatggagtg aatgacatgg ccgcgaagaa
      301 aaagaaaaag gcgaagaagg ccgtgaaggc caagaaggcg cccgctaaga agtcctctaa
      361 gaagtccgct aagaaatcca agaaggtagc gaagaaggcc aagaagcccg ctgccaagaa
      421 agccaaaaag aaagttgtga aggccgccgc caaaaaggcg ccggccaagc cagccgctgc
      481 ggccccggct cccagcgaag ccccgcctgc ggttccgccc ggcatcacct tctgattgat
      541 ggcctgaaaa caaaacgccg cgatctcacg atcgcggcgt ttatttttgt ctgcccgcgg
      601 cctacttggt gtcgggcttg aagtccaacg cgcagccgtt ggtgcagtag cgcaggccgg
      661 tgggcccggg gccgtcattg aagacgtgcc ccagatggcc gccgcaattg gcgcagttga
      721 actccgtgcg caccatgcca tggctggtat cggtgacggt tgtcaccgcc cccggcttgg
      781 tatcccagaa gctgggccag ccggtgccgc tgtcgaactt ggtatgggca tcgaacagtt
      841 cggcgccgca gccggcgcat tggaactcgc cggggcgctt ttcctggttc agcgggctgg
      901 agcccggccg ttcggtaccg cgctcgcgca gcacacggtg ctgttcgggg gtgagttgac
      961 gctccgtctt ggtcttggtg tctgtcatgg cgttttcctt tccctcccca atacgtcgaa
     1021 cctgtcgaaa agttactgat ttgaggccat caccatggcc agcatgccgc tgagccggcc
     1081 ggtattgccg aaggcgaagc cagcatcata gatcacatcg tccactttcc agccctgcgc
     1141 cgtgttcacc agcagcagcg tgtcgttcca gttgaccggc ttttcggctt tgcgcccctg
     1201 catcggcgcc gtcacatagc tcagcgccac cgggcagcgg gcggttttgg cgtcgccctg
     1261 gcaggcgccg gctttccatt ccgtcgcccc ttcgaacagg gaggaaaaaa tatcgccttc
     1321 cagtatgggg ggcacggcat tcttcacctt ggcggtcagc cgcacctggg cggcggcggc
     1381 atcggcgagc tgcttgttga gacgaggcga aagcaccggg gcatagcgca accgtccggt
     1441 ggcgtcggga atgccgccgc cctgggcgtg ctgaccatta tatacggcgt aaaaggcgtt
     1501 gacggctgaa gccggatctt ccgcagcaac ggctgaggaa accagcagca acgtggccag
     1561 cagccggtgc ttcatcatca ccggttcttc aagctgtcgc ggatctcgcg cagcagaaga
     1621 acatcttcgg ggggtgcagg cgcgacttcc ggggccggcg gcggcgccgt cagcttgttc
     1681 aactggcgca gcagcatgaa caaagcgaag gcgacgatca ggaagtttat gatggcattg
     1741 ataaacaacc cataattgat ggtgacgtcc ttggcgatct tggcggcggc caaggtatcc
     1801 acggcgcggt cgcccttgag cacgacgaaa aagttggcga agtccacccc gcccagcgcc
     1861 aggccgatcg gcggcataat gatgtcattg accagcgaat tgacgatgcc ggtgaaggag
     1921 gcgccgatga tcacaccgac tgccaggtcc accacattgc cgcgcacggc gaatttcttg
     1981 aattcatcaa tcagggccat ggaaccgtcc gttttttgaa aggggcatca ggctaatcgc
     2041 ggcgcggcgc ctcaacaagc cggcgcggta tcgccagata gacaacagcc accgccaacc
     2101 cggtcagggc gcccaagtca ttggcagcga aatcgcccca ttcgccgtca cgccctacca
     2161 tgttctgcag aatttccagc gccccgccca gcgccaccat ccccaagaga atccagacca
     2221 gcgagcgccg cagcccccaa cccaaactcg ccagcagggt caagccgaaa taggcggtga
     2281 agtgttccag cttgtcccat gccaagggac cgggcagggc aggcgggtgc ggcgtcagct
     2341 cgccccaggt gaccactgcc aaagcgggcc agaacaacca ggcgccggca cggcgcaccc
     2401 agggcagaaa gattccgtgg aaaaacatgg agcctcaact agcgcagcca tgggccgcga
     2461 atacggcgca ccggtgaaaa agcggcgata agttaaatac gcaattaaag caatggctta
     2521 agagaaaaat cggcgacttt agtcccgata attgcgcaag gcttcaatct tggcggccgc
     2581 cgcggctgcc tgcagagcct ctgcatcata ggcaaaaggc ctcgcgggct tgattttacg
     2641 gcccatatcc ttttaaacgc gcgctctttc gagtggcccg gctggacatg ccgtggcggc
     2701 tccaaacgcg acccgggccg ccaataccca ttggcgcccc cacaaggaaa agcaaaatgt
     2761 ccaagatgaa gaccaagtcg ggcgccaaaa agcgcttcaa gttcaccaaa accggcaaga
     2821 tcaagaccca tcaggtcggc aagcgccatc gcctgatcaa caactcgccg gcgcgtaccc
     2881 gcgaccttcg cggcaccgcg gtcctgtccg cctccgaaac ccagcgcgtc aagcgctgga
     2941 tgccctacgc ttaaggagga cagaccatgt cacgcacccc ccgttccgtt ccgtcacgcg
     3001 cccgccgcaa caaggtcctc aagcaggcca agggcatgcg cggccgccgc aagaacaata
     3061 tcaccacggc caatgccgcg gtcgataagt cgctgcagca caactatatc ggccgcaagg
     3121 agcgcaagcg taacttccgc gctttgtgga tccagcgcat caacgccgcc gtgcgcgagc
     3181 atggcctcac ctacagccga tttatcgccg ggctcgccgg cgccgggatc gagatcgacc
     3241 gcaaggttct gtccgatctg gcgatccacg agcccagcgc attcaaggct ctggtggatc
     3301 aggcgtcgaa gggttaggtc ggataagcaa aaggtccagt ggaccttttg cccgaccgaa
     3361 cgccgcagcg tcgcgtgacc aaacgcgacg cgaggccgga gtggtagtag cagcttctcc
     3421 gtaggttttg catgaccgat atcgccgccc ttcagtccga catactggcg cagatcgtgg
     3481 cgtgcgccga cgaagccgcg ctggaagcgg tgcgcgtcgc caccttgggc aagaagggct
     3541 cggtcagcgc cctgctggcc accatgggca agttggaccc cgaagagcgc aaggtccaag
     3601 gccccaggtt caacggcctg cgcgacacgg tcaccgcggc catcggcgcg cgcaaggccg
     3661 agttggccga tatggcgctg gacgcgcgcc tggcggcgga gaccttggac gtcaccctgc
     3721 ccgcccggcc cgagaacagc ggcacggtgc accccatttc ccaggtgctg gatgaagtgg
     3781 tcgccgtctt cgccgagctg ggctttggcg tcgccgaagg cccggacgtg gaatttgacg
     3841 attacaattt caccaagctg aacatcccgc ccgatcatcc tgcccgccag atgcaggaca
     3901 ccttctatgt cgcgccccag gccgacggct ccagccatgt gctgcgcacg catacttcgc
     3961 cggtgcaggt gcgcaccatg ctgaacacaa agccgcccat ccggattatt tcgccgggcc
     4021 gcacctatcg cgtcgacagc gacgccaccc attcgcccat gttccatcag gtcgaagcgc
     4081 tggtggtgga tgaaggcatt catctgggcc atctgaaatg gacggtggag cagttctgca
     4141 aagctttctt cgagatcgac cagatcgagc tgcgggcgcg gcccagcttc tttcctttca
     4201 ccgagccgag cctggaatgg gacatgcgct gcgaccgcag cgtacccggc aagatcacct
     4261 tcggcagcgg caatgactgg ctggagttgg gcggcagcgg catggtccat cgcaagg
//
LOCUS       DATMDK010000293         3184 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2424227,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000293 DATMDK010000000
VERSION     DATMDK010000293.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3184)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3184)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3184
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2424227"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..233
                     /locus_tag="VNN98_05645"
     CDS             <1..233
                     /locus_tag="VNN98_05645"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61614.1"
                     /translation="LANASPVAGALPAPPGSSQAPAQDSGLSLPPPGPSIDISRIDGQ
                     VRENSVKKVGEVVSSHPEEALAIIRTWLHQPV"
     gene            248..1282
                     /gene="fliG"
                     /locus_tag="VNN98_05650"
     CDS             248..1282
                     /gene="fliG"
                     /locus_tag="VNN98_05650"
                     /inference="COORDINATES: protein motif:HMM:TIGR00207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009433 - bacterial-type flagellum basal
                     body, C ring [Evidence IEA];
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0001539 - cilium or flagellum-dependent
                     cell motility [Evidence IEA];
                     GO_process: GO:0006935 - chemotaxis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliG"
                     /protein_id="HWM61615.1"
                     /translation="MSKPLKTAVKEDIRTLSGAERAAIIMLSLGEEHSQKIWQMMDEE
                     EIKEVSQVMSNLGSVSAILIEKLLVDFVSQMSGTGSIMGSYESTERLLANILPEDKVG
                     SIMEEIRGPAGRTMWDKLANVNETVLANYLKNEYPQTVSVVLSKIKPEHAARVLGSLP
                     EEFALEVVQRMLRMESVQKDILDKVEQTLRVEFMSNLARTAKRDAHEQMAEIFNNFDR
                     QTESRFITALEERSRDSAERIKALMFTFEDLSKLDPGSIQTLLRNVEKDKLGLALKGA
                     TDGLRDVFFSNMSERAGKILREDMEAMGPVRLKDVDEAQMRMVNVAKDLANKGEIMIA
                     GGSAEDELVY"
     gene            1282..1956
                     /locus_tag="VNN98_05655"
     CDS             1282..1956
                     /locus_tag="VNN98_05655"
                     /inference="COORDINATES: protein motif:HMM:NF014196.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FliH/SctL family protein"
                     /protein_id="HWM61616.1"
                     /translation="MSKPSDARRFTFDTEFSGAEDRRAPAARARQKQTLTTEELENMQ
                     ALARLEGESNAQILATQALERSISALTISVRVALDTSHAEVEALRDDAARLALAMAKK
                     IAPAALAALPAGDVETALRQAMHQAIAEPRIILRAAPAVTEVLESRLTDIAHEEGYEG
                     RVMIAADPAMTGADCRIEWRGGGAERREQIIEDALTALIAHRFSHQVPTSDVPISDVP
                     TSDVKG"
     gene            1961..2320
                     /gene="fliN"
                     /locus_tag="VNN98_05660"
     CDS             1961..2320
                     /gene="fliN"
                     /locus_tag="VNN98_05660"
                     /inference="COORDINATES: protein motif:HMM:TIGR02480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009288 - bacterial-type flagellum
                     [Evidence IEA];
                     GO_function: GO:0003774 - cytoskeletal motor activity
                     [Evidence IEA];
                     GO_process: GO:0001539 - cilium or flagellum-dependent
                     cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliN"
                     /protein_id="HWM61617.1"
                     /translation="MATDNVDLPDLSQDAASGVPAALLNTDGPAEAAPKHSAADLEAV
                     FDVPVTVSAVLGKSAMEVSQLLKLGKGTIVELDRKVGEAIDIYVNDRLVARGEVVLVE
                     DRLGITMTEIIKAGSGS"
     gene            2340..>3184
                     /locus_tag="VNN98_05665"
     CDS             2340..>3184
                     /locus_tag="VNN98_05665"
                     /inference="COORDINATES: protein motif:HMM:NF012385.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-54 dependent transcriptional regulator"
                     /protein_id="HWM61618.1"
                     /translation="MRLLIVGGLQGQIGLATKIAMDKGAKVTHAVDIEQALASLRGGV
                     GADLVFCDVSLDIGALVRGLSAERICTPVVACGIGTDTRRAVEAIRAGAKEYLPLPAD
                     AELIAAVLAAVADESHQLVYEDEAMSAVLSLADQIAGSEASILITGESGTGKEVLARY
                     VHRKSARADKPFISVNCAAIPENLLESELFGHEKGAFTGAIARRIGKFEEANGGTLLL
                     DEISEMDARLQAKLLRAIQEREIDRVGGTKPVKVDIRIIATSNRDLAEAVKHGTFRED
                     LLYRL"
BASE COUNT          650 a         1045 c          973 g          516 t
ORIGIN      
        1 cgctggccaa tgcctcgccg gtggcgggtg ccttgcccgc gcctcccggc agcagccagg
       61 cacctgcaca ggatagcggc ttgagcttgc ccccgcccgg tccctcgatc gacatcagcc
      121 gcatcgacgg ccaggtgcgg gaaaattccg tcaagaaagt cggtgaagtg gtctcctcgc
      181 atcctgaaga agcgctggcg atcatccgca cctggctgca tcaaccggtc tgagcccaga
      241 aacaaccatg tccaagcccc tcaaaaccgc cgtcaaggaa gacatccgca ctctctccgg
      301 agccgagcgc gccgccatca tcatgttgtc gctgggcgaa gaacattccc agaagatctg
      361 gcagatgatg gacgaggaag agatcaagga agtctcccag gtcatgtcca atctgggttc
      421 ggtttccgcc atcttgatcg aaaaactgct ggtggatttc gtctcccaga tgtcgggcac
      481 cggctcgatc atgggctcct atgaatccac cgaacgcctg ctggccaata tcctgcccga
      541 ggacaaggtc ggctcgatca tggaagaaat ccgcggcccc gccggccgca ccatgtggga
      601 caagctggcc aatgtgaacg agacggttct ggccaactat ctcaagaatg aatatcccca
      661 gaccgtttcg gtggtgctca gcaagatcaa gccggaacat gccgcgcgtg tccttggctc
      721 cctgcctgaa gagtttgccc tggaagtggt gcagcgcatg ctgcgcatgg aaagcgtgca
      781 gaaggatatt ctggacaagg tcgagcagac cttgcgcgtg gagttcatgt ccaacctggc
      841 gcgcaccgcc aagcgcgacg cccatgagca gatggcggaa atcttcaaca atttcgaccg
      901 ccagaccgaa agccgcttca tcaccgccct ggaagaacgt tcgcgcgaca gcgccgagcg
      961 catcaaggcg ctgatgttca ccttcgaaga cctttccaag ctggacccgg gttcgatcca
     1021 gaccctgctg cgcaatgtcg aaaaggacaa gctgggcctg gcgctgaagg gcgccaccga
     1081 cggtctgcgc gacgtcttct tctccaacat gagcgagcgc gccggcaaga tcctgcgcga
     1141 agacatggag gcgatgggtc cggtacgcct gaaagacgtg gatgaagccc agatgcgcat
     1201 ggtcaatgtc gccaaggacc tggccaacaa gggcgaaatc atgatcgccg gcggcagcgc
     1261 cgaagacgag ctggtgtact gatgagcaaa ccttccgatg cccgccgttt caccttcgat
     1321 accgaatttt ccggggccga ggatcgccgc gcgcccgccg cccgggcgcg ccagaaacag
     1381 accctcacca ccgaggagct ggagaatatg caggccctcg cccggctgga aggcgagagc
     1441 aacgcccaga ttctggccac ccaggcgctg gagcgcagca tctccgcctt gaccatcagc
     1501 gtgcgcgtcg cattggacac cagccatgcc gaggtcgagg cgctgcgcga tgacgccgcg
     1561 cgtctggcgc tggccatggc caaaaaaatc gcccctgccg ccctggccgc cctgccggcc
     1621 ggcgatgttg aaaccgccct gcgccaggcc atgcaccagg ccatcgccga gccgcgcatc
     1681 atcttgcgcg ccgcgccggc cgtgaccgaa gtgctggaat cgcggctgac tgatatcgcc
     1741 catgaagaag gctatgaggg ccgcgtgatg atcgccgccg atccggccat gacgggcgcc
     1801 gattgccgca tcgaatggcg cggcggcggc gccgaacgcc gcgagcagat catcgaagac
     1861 gcgctgaccg cgcttattgc ccaccgtttc tcgcatcaag tgcccacttc tgacgtgccc
     1921 atttctgacg tgcccacttc tgacgtgaaa ggataatccc atggcgaccg acaatgtcga
     1981 tctgcccgat ctcagccagg acgccgcgtc cggcgttccc gccgccctgc tcaacaccga
     2041 cggcccggcc gaggcggcac cgaaacactc cgctgccgac ctggaagcgg tgttcgacgt
     2101 gccggtcacg gtcagcgccg tgctgggcaa gagcgccatg gaagtcagcc agcttttgaa
     2161 gctgggcaag ggcaccatcg tcgagctgga ccgcaaggtc ggcgaagcca tcgacatcta
     2221 tgtcaatgac cggctggtcg cgcgcggcga agtcgtgctg gtggaagacc ggctgggcat
     2281 caccatgacg gaaatcatca aggccgggtc cggctcttaa ggactgaagg gatactatca
     2341 tgcgtctact catcgtcggc ggacttcagg gccaaatcgg cctggccacc aaaatcgcca
     2401 tggacaaggg ggcgaaagtc acccacgccg tggacatcga acaggccctg gcctcgcttc
     2461 gcggcggtgt cggcgccgat ctggtgttct gcgacgtgag tttggacatc ggcgcgctgg
     2521 tgcgcggcct gtccgccgag cgcatctgca ccccggtggt ggcctgcggc atcggcaccg
     2581 atacccgccg cgccgtggaa gcgatccgcg ccggcgccaa ggaatatctg cccctgcccg
     2641 ccgacgccga actgatcgcc gcggtgctgg cggcggtggc cgatgaatcc catcagctgg
     2701 tctatgaaga cgaagccatg agcgcggtgc tgagcctggc cgaccagatc gccggcagcg
     2761 aagcctcgat cctgatcacc ggcgaaagcg gcaccggcaa ggaagtgctg gcgcggtatg
     2821 tccaccgcaa atcggcgcgc gccgacaagc ccttcatttc ggtcaattgc gctgccatcc
     2881 cggaaaacct gctggaatcc gaactgttcg gccatgaaaa aggcgccttc accggcgcca
     2941 tcgcccggcg catcggcaag tttgaggaag ccaatggcgg caccttgctg ctggacgaaa
     3001 tcagcgagat ggacgcccgt ctgcaggcca agctgctcag agccatccag gaacgcgaaa
     3061 tcgaccgcgt gggcggcacc aagccggtca aggtggacat ccgcatcatc gccacttcca
     3121 accgcgacct ggccgaggcg gtcaagcacg gcaccttccg cgaagacctt ctctatcggc
     3181 tcaa
//
LOCUS       DATMDK010000294         2626 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1053885,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000294 DATMDK010000000
VERSION     DATMDK010000294.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2626)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2626)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2626
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1053885"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..426)
                     /locus_tag="VNN98_05670"
     CDS             complement(<1..426)
                     /locus_tag="VNN98_05670"
                     /inference="COORDINATES: protein motif:HMM:NF012337.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl synthase N-terminal-like
                     domain-containing protein"
                     /protein_id="HWM61619.1"
                     /translation="MRRVVVTGLGLVTPLACGVEETWSRLLAGQSGASAITKFRVDDL
                     PTKIACQVPRGDGSNGSFSPDQWVDAKEQRRMDDFIIYGLTAAKQAVRDSGWVAQSDE
                     DKFRTGVLIGSGIGGLDGIEQASILVHEKGPRRLSPFFIP"
     gene            complement(452..691)
                     /locus_tag="VNN98_05675"
     CDS             complement(452..691)
                     /locus_tag="VNN98_05675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018062986.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HWM61620.1"
                     /translation="MSDTAERVKKIVVEHLNVDADKVTDTASFIEDLGADSLDTVELV
                     MAFEEEFGIEIPDDAAESIVTVGDAVKYIDKANAA"
     gene            complement(832..1572)
                     /gene="fabG"
                     /locus_tag="VNN98_05680"
     CDS             complement(832..1572)
                     /gene="fabG"
                     /locus_tag="VNN98_05680"
                     /EC_number="1.1.1.100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020044906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004316 - 3-oxoacyl-[acyl-carrier-protein]
                     reductase (NADPH) activity [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-oxoacyl-[acyl-carrier-protein] reductase"
                     /protein_id="HWM61621.1"
                     /translation="MFDLSGKAALVTGASGGIGGAIAKTLHGQGAKVVLSGTRAEALE
                     ALRAELGEGAFIAAANLSDIASIEALPKAAEEAAGAGIDILVNNAGITKDNIFMRMKD
                     EEWDQVIAVNLTAAFRLSRAVLRGMMKKRWGRIIQITSVIGATGNAGQGNYAAAKAGL
                     VGMTKSLAAEVASRNITVNAVAPGFIQTAMTDVLTDQQKEMIGQRIPAGRMGMPSEIA
                     AAVAYLASQEAAYVTGETIHVNGGMAMI"
     gene            complement(1572..2513)
                     /gene="fabD"
                     /locus_tag="VNN98_05685"
     CDS             complement(1572..2513)
                     /gene="fabD"
                     /locus_tag="VNN98_05685"
                     /EC_number="2.3.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020044905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004314 - [acyl-carrier-protein]
                     S-malonyltransferase activity [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ACP S-malonyltransferase"
                     /protein_id="HWM61622.1"
                     /translation="MTRAFLFPGQGSQKVGMGRDLADAFASARAVFQEVDDALSQKLS
                     KLMWEGPEEDLVLTENAQPAIMAASIAVVRILEQEMGLDVAKHAYLVAGHSLGEYSAL
                     CAAGAFSLADTARLLKIRGQAMQSAVPVGEGGMTALIGAEIEQAEEVAKEAAAAGGVC
                     VVANDNAPGQVVISGTLDALARAGEIAKTKGIKRAMPLAVSAPFHCPLMQPAADRMAE
                     ALAAVTIRPLSVPVLANVTAKEASNPDHVRQLLVEQVTGRVRWRESILALKGLTVDTT
                     VEFGGKVLTGMVKRIDPSLQMITLDTPADLEAFGKVL"
BASE COUNT          482 a          822 c          804 g          518 t
ORIGIN      
        1 gggaatgaaa aagggcgaca ggcgacgcgg acctttttca tgcaccagga tcgaggcctg
       61 ctcgatcccg tccagcccgc cgatgcccga cccgatcaag acgccggtgc ggaacttgtc
      121 ttcgtcactc tgcgccaccc agccggaatc gcgcaccgcc tgcttggcgg cggtcaggcc
      181 atagatgatg aaatcatcca tgcgcctttg ttccttggcg tccacccact ggtcggggct
      241 gaagctgccg ttcgaaccat caccgcgcgg cacctggcag gcgatcttgg tcggtagatc
      301 gtccacccgg aacttggtga tggcgctggc gcccgattgc ccggcaagca gacgcgacca
      361 agtctcctcc acgccgcaag ccagcggcgt gacaagaccc aggcccgtga caacgaccct
      421 gcgcatcgtc tttaagacct tatatgccgg atcaggcggc gttcgctttg tcgatatatt
      481 tgacggcgtc accgacggtg acgatggatt cggccgcgtc atcgggaatt tcgatgccga
      541 attcctcttc gaacgccatc accagctcga ccgtgtcgag gctgtcagcg cccagatctt
      601 caatgaagga cgcggtatcc gtgaccttgt cggcatcgac attgagatgt tcgacgacga
      661 tcttcttcac gcgctcggca gtatcgctca tggacttgta agcctctcct agatttcaaa
      721 ccggcaatgg gaaacgccgg gccacacaat tgggtgcttc gtgaggtggc cggttaggta
      781 acataaaccc taaccaccgc caatgtactg gttaacctgt tgtttttgtt gtcatatcat
      841 cgccatcccg ccattgacat ggatggtttc gcccgtgaca taggccgctt cctgcgacgc
      901 gagataggcg acggcggcgg caatctcgct gggcatgccc atccgcccgg ccggaatccg
      961 ctggccgatc atctcttttt gctggtcggt gagcacatcg gtcatggcgg tttggatgaa
     1021 gccgggcgcc acggcattga cggtgatgtt gcgcgaggcg acctcggcgg ccagcgattt
     1081 cgtcatgccc accagccccg ccttggcggc ggcatagttg ccctggccgg catttccggt
     1141 ggcgccgatc acggatgtaa tctgaatgat gcggccccag cgctttttca tcatgccgcg
     1201 cagcacggca cggctgaggc ggaaggcggc ggtgagattg acggcaatga cctggtccca
     1261 ctcctcatcc ttcatgcgca tgaagatatt gtctttggtg atgccggcat tgttaaccag
     1321 gatatcgatg cccgcgcctg ctgcttcttc ggcagccttg ggcagggctt cgatggaggc
     1381 gatgtcggag aggttggctg cagcgatgaa tgcaccctca cccaactcgg cacgcagcgc
     1441 ttccagcgct tcggcgcggg tacctgacag caccactttc gcaccttggc catgcaaggt
     1501 cttggcgatg gcgccgccga tgccgcccga tgcgccggtt accagggcgg ccttgccgga
     1561 aagatcgaac atcaaagcac ctttccaaaa gcttccaggt cagcgggcgt gtccagtgtg
     1621 atcatttgca gcgacggatc aatgcgcttg accatgccgg tgagaacctt gccgccgaac
     1681 tccaccgtgg tgtccacagt gaggcctttc agggccagga tcgattcgcg ccagcgcacc
     1741 cggccggtga cctgttccac cagcaactgg cggacatgat cgggattgct ggcttccttg
     1801 gccgtgacat tggccagcac cggcaccgac agcgggcgga tggtgacagc ggccaaggct
     1861 tcggccatac ggtcggcggc gggctgcatc agcggacaat ggaacggcgc ggaaaccgcc
     1921 agcggcatgg cgcgcttgat gcccttggtc ttggcgatct cgccagcccg cgccagcgca
     1981 tcgagcgtgc cggaaatcac cacctggcct ggggcattgt cgttggcgac gacgcagaca
     2041 ccgccggcag cggcggcttc tttcgcgact tcttctgcct gttcgatctc agcgccgatc
     2101 agggcggtca tgccgccctc gcccaccggc accgccgact gcatggcctg gccgcgaatc
     2161 ttcaagaggc gcgccgtgtc ggcgaggctg aaggcgcccg cggcgcagag cgcggaatat
     2221 tcgcccaggc tgtgaccggc gacgaggtaa gcgtgtttgg cgacatccag gcccatttcc
     2281 tgttccagga tacgcaccac ggcgatagag gcggccatga tagcgggctg ggcgttttcg
     2341 gtcaggacca gatcctcttc cgggccttcc cacatcagct tggaaagctt ctgggacagg
     2401 gcgtcgtcca cttcctggaa cacggcgcgg gcggacgcga aggcatcggc cagatccctg
     2461 cccatgccga ctttctggct gccctgtccg ggaaaaagaa atgcgcgagt catggcggca
     2521 gacaaatcaa gagcgcctct tggagtcaag cgggcgtccg tagaacgctg ccttcatacg
     2581 cagattggag ggaactgatt tcaccataac aagtgttgtc ccgcgt
//
LOCUS       DATMDK010000295         4025 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1054275,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000295 DATMDK010000000
VERSION     DATMDK010000295.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 4025)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4025)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4025
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1054275"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..540)
                     /locus_tag="VNN98_05690"
     CDS             complement(<1..540)
                     /locus_tag="VNN98_05690"
                     /inference="COORDINATES: protein motif:HMM:NF013702.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipid acyltransferase family protein"
                     /protein_id="HWM61623.1"
                     /translation="MARLRAVFIIVGFLVITLLGMPVQWLLIKLRSPAARIFPWRYHR
                     LVAALFGIHITVIGKPVTGEGVLMVANHTSWADIIIFSAATPLSFVSKAEVARWPLFG
                     SLARLQRSVFVERTRRSATGETRDIIRERLLAGDTLLLFPEGTSHDGNTVLPFKSALL
                     GAAEARLASGQHVRVQPVST"
     gene            complement(577..996)
                     /locus_tag="VNN98_05695"
     CDS             complement(577..996)
                     /locus_tag="VNN98_05695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007088438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fur family transcriptional regulator"
                     /protein_id="HWM61624.1"
                     /translation="MTRIEKACVDKGLRMTDQRRVIARVLSDAADHPDAEELYRRASS
                     IDPHISIATVYRTVKLFEDAGILERHDFRDGRSRYEEVPESHHDHLIDVATGSVIEFR
                     NEDIEKLQRRVAEELGFELIDHRLELYGVPKGRKPQS"
     gene            complement(1033..1467)
                     /locus_tag="VNN98_05700"
     CDS             complement(1033..1467)
                     /locus_tag="VNN98_05700"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012792.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HWM61625.1"
                     /translation="MSDIAPFDSRAGTYALAAVHAACFPDPWNAAAISALLVTPGTFA
                     CAHEDGFVLARVAGGEAEILTLAVAPAARGRGLGRGLLQAAITKARELGAETMFLEVG
                     TDNPAALALYAGLGFAKVGTRKGYYRGGDALVLRLPLLREIA"
     gene            complement(1460..2119)
                     /gene="tsaB"
                     /locus_tag="VNN98_05705"
     CDS             complement(1460..2119)
                     /gene="tsaB"
                     /locus_tag="VNN98_05705"
                     /EC_number="2.3.1.234"
                     /inference="COORDINATES: protein motif:HMM:TIGR03725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003725 - double-stranded RNA binding
                     [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     dimerization subunit type 1 TsaB"
                     /protein_id="HWM61626.1"
                     /translation="MKILAVDTALGACSAALLDGDKILAYIFEIMDRGHAERLAPMVD
                     ETMKQAGMAFAALERLAVTTGPGTFTGQRVGLAFMRGLRLALKRPLTGLTTLEVIAAG
                     AMDETKKPKAAVIHDARREEAYLLLQDGERTVQQPIVLPFQDAIARIRAFGPCALAGT
                     GAAAAQEGLGGDFTLSTIRQPDALWVARLAQRQLVTETAPGPLYLRAPDAKLPGGKAL
                     V"
     gene            complement(2116..2751)
                     /locus_tag="VNN98_05710"
     CDS             complement(2116..2751)
                     /locus_tag="VNN98_05710"
                     /EC_number="1.1.1.298"
                     /inference="COORDINATES: protein motif:HMM:NF003768.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="malonic semialdehyde reductase"
                     /protein_id="HWM61627.1"
                     /translation="MPTSNQNAEEAYLSEAHHAVSDAALDTLFREAHTTRKWLDKKVS
                     PALLMAIYDVMRWGPTATNITPARIVFVVSPEAKERLKPHLDGGNVRQSMEAPVTAIL
                     GYDLDFARTLPRLYRDNPNAQSWFPDPEANKVLGLRNGSLQGGYFILAARALGLDCGP
                     MGGFNHDGIDAEFFAGTNIKSNFLCNLGYGAPGGFRPRNERLGFDEACQIL"
     gene            complement(2751..3308)
                     /locus_tag="VNN98_05715"
     CDS             complement(2751..3308)
                     /locus_tag="VNN98_05715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017532211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NifU family protein"
                     /protein_id="HWM61628.1"
                     /translation="MFIQTESTPNPATLKFLPGREVMGEGAVADFPSADTAGRSPLAK
                     ALFAIPEVSRVFFGSDFISVTKRDGDWKHLKHAILGAVMEHFTQGHPLLEGGADETEE
                     TFSDEDSEIVEQIKELIETRVRPAVAQDGGDIIFKGFDGGSGIVSLHLQGSCAGCPSS
                     TMTLKNGIENMLRHYVPEVTAVEAV"
     gene            3431..3922
                     /locus_tag="VNN98_05720"
     CDS             3431..3922
                     /locus_tag="VNN98_05720"
                     /inference="COORDINATES: protein motif:HMM:NF021512.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2239 family protein"
                     /protein_id="HWM61629.1"
                     /translation="MCYSAFSGFDHIASGSLPETYAACRHIPGALIFDRATGRVIDID
                     PRFPPSEEAPRPGRPRLGVTAREVTLLPRHWDWLATQPGGASVALRKLVEEASRNPRA
                     QQRARRDAAYRFATAIVGNAPGYEEAVRALYAGQAEEFAAHIEAWPADVRHALEEMTE
                     GAF"
BASE COUNT          739 a         1257 c         1289 g          740 t
ORIGIN      
        1 ggtggagacc ggctgcaccc tgacatgctg gccgcttgcc agccgcgcct cggccgcgcc
       61 caacagcgcg ctcttgaacg gcagcacggt attgccgtca tggctggtgc cttccggaaa
      121 cagcagcaag gtatcgccgg ccagcagccg ctcgcggata atatcgcggg tctcgccggt
      181 ggcgctgcgg cgtgtccgct cgacaaagac gctgcgctgc agccgcgcca aggagccgaa
      241 caggggccag cgcgccacct cggccttgga gacaaaggac agcggcgtcg ccgccgaaaa
      301 gatgatgatg tcggcccagc tggtgtggtt ggccaccatc agcacgcctt cgccggtgac
      361 gggcttgccg atcaccgtga tatggatgcc gaacaaggcg gcgaccagtc tgtgatagcg
      421 ccaggggaag atgcgggcgg cggggctgcg cagcttgatc agcagccatt gcacgggcat
      481 gcccagcagg gtaatgacca gaaagccgac aatgatgaaa acggcgcgaa gccgtgccat
      541 cagcacttca acatcatgat tggggcttgc ggcacgtcat gactggggct tgcgcccttt
      601 gggcacgccg tacagttcca gccggtggtc gatcagctcg aagcccagct cttccgccac
      661 ccggcgctgc agcttttcga tatcctcgtt gcggaattcg atcacgctgc cggtcgccac
      721 atcgatcagg tgatcgtgat gggattcggg cacttcctca tagcgcgagc ggccgtcgcg
      781 aaaatcatgc cgttccagga taccggcatc ctcgaacagc ttgacggtgc gatagacggt
      841 ggcgatcgag atatgcggat cgattgacga ggcgcggcgg tacaactcct ccgcatcagg
      901 atgatcggca gcgtcggaca acacccgcgc gatgacccgg cgctggtcgg tcatccgaag
      961 acccttgtcg acgcaggctt tctcgatccg cgtcaccttc aactcctctg gtcgtgcggg
     1021 aagatgcgca ggttaggcga tttcgcgcag cagaggaagc ctgaggacca gcgcgtcccc
     1081 gccgcgataa tagcccttgc gcgttccgac cttggcaaag cccagcccgg catagagcgc
     1141 cagggccgcg ggattgtcgg tgccgacttc cagaaacatc gtttcggccc ccagttcccg
     1201 cgctttggtg atcgcggctt gcaacagccc gcgtcccagc ccccgccccc gcgctgccgg
     1261 ggccaccgcc agggtgagga tttccgcttc gccgcccgcc acccgcgcca ggacaaagcc
     1321 gtcctcatgg gcacaggcaa aggtgcccgg cgtaaccagc aaggcgctga tcgcggcggc
     1381 attccaggga tcgggaaaac aggcggcgtg caccgctgcc aatgcgtatg taccggcccg
     1441 ggagtcgaac ggcgcgatgt cagacaagtg ctttaccgcc cggcagcttg gcatccgggg
     1501 cgcgcagata gagcggtccc ggtgcggttt cggttacaag ctgcctttgc gccaatcgcg
     1561 ccacccacaa ggcgtccggt tggcggatgg tggagagggt gaaatcgccg cccaggcctt
     1621 cttgtgccgc agccgcgccg gtgccggcca aggcgcaggg accgaaagcg cggatgcggg
     1681 caattgcatc ctggaacggc aggacgatgg gctgctgcac cgtccgctcg ccatcctgca
     1741 gcagcagata ggcttcctcg cgccgcgcgt catggatgac ggcggctttg ggttttttgg
     1801 tttcgtccat cgccccggcg gcgatgacct ccaaggtggt caggcctgtc agcggccgct
     1861 tcagcgccaa ccgaaggccg cgcataaagg ccaggcccac acgctggccg gtgaaagtac
     1921 cgggaccggt ggtgacggcg aggcgttcca gcgcggcaaa ggccatgcct gcctgtttca
     1981 tcgtctcatc caccatcggc gccaggcgtt cggcatggcc ccggtccata atttcaaaaa
     2041 tatacgcaag aattttatcg ccatccagca atgcggccga acacgcgccg agtgcagtat
     2101 caacggcgag aatcttcaca ggatctggca agcctcgtcg aagcccaggc gttcgttgcg
     2161 cggacggaag ccgcccggcg cgccatagcc cagattgcag aggaaattgg atttgatgtt
     2221 ggtgccggcg aaaaattccg cgtcgatgcc gtcatggttg aagccgccca tcggaccgca
     2281 atccaggccc agggcgcgcg ccgccaaaat gaaatagccg ccctgcaggc tgccgttgcg
     2341 taagcccagg accttgttgg cctcgggatc ggggaaccag gattgcgcat tgggattgtc
     2401 gcgatacagg cgcggcagag tgcgcgcgaa atccaggtcg tagcccagga tcgcggtgac
     2461 cggcgcttcc atgctctggc gcacattgcc gccatcgaga tgcggtttca gccgttcctt
     2521 ggcctccggc gacaccacaa agacgatacg cgccggcgtg atgttggtgg cggtggggcc
     2581 ccagcgcatc acgtcataga tcgccatcag caaagccgga ctgactttct tgtccagcca
     2641 tttgcgcgtg gtgtgggctt cgcggaacaa ggtgtcgagc gccgcgtcgc tgacggcgtg
     2701 atgcgcttca gaaagatagg cttcttctgc gttttgattg gaagtgggca ttagacggct
     2761 tcgaccgcgg tgacttcggg cacgtaatgg cgcagcatat tttcgatacc gttcttcagg
     2821 gtcatggtgg aagacggaca gccggcgcag ctgccttgaa gatgcagaga gacgatgccg
     2881 ctgccgccgt caaagccctt gaagataata tcgccgccgt cctgcgctac ggcggggcgc
     2941 acccgcgtct cgatcagctc cttgatctgt tcgacgatct cgctgtcttc gtcgctgaac
     3001 gtctcttcgg tttcgtccgc gccgccttcc agcaagggat ggccttgggt gaaatgctcc
     3061 atcaccgcgc ccaggatggc gtgcttgaga tgcttccagt cgccatcgcg cttggttacc
     3121 gaaataaaat ccgagccgaa gaacacccgg ctgacttcgg gaatcgcgaa cagtgccttg
     3181 gccaggggcg agcggccagc tgtatcggcg ctgggaaaat cggccaccgc gccctcgccc
     3241 atgacctcgc ggccgggcag gaatttcagg gtggcgggat tgggggtgga ttcggtttgg
     3301 atgaacatga tgtgtgcccg ggatgccccc cttaaatgaa ccttggccgc agttgcatca
     3361 agagaaacag gcaatttact tttacccgga ttatattgac ttggatattt tacccggata
     3421 aatagcgaat atgtgctatt ctgccttttc gggcttcgac catatcgcct ccggctccct
     3481 gcccgagacc tatgctgcct gccgccatat tccgggtgcc ctgatttttg accgcgccac
     3541 gggccgggtg attgatatcg acccccgctt cccgcccagc gaggaagcgc cccgccctgg
     3601 ccggccccgg ttgggggtca cggcacggga ggtcactttg ctgccccggc attgggactg
     3661 gctggccacc cagccgggcg gcgcctcagt ggcgctgcgc aagctggtgg aggaagccag
     3721 ccgcaacccc cgcgcccagc agcgcgctcg gcgggacgcc gcttatcgtt tcgccaccgc
     3781 cattgtcggc aatgcgccag gttacgaaga ggccgtgcgg gcgctgtatg cgggccaggc
     3841 cgaggaattc gccgcccata tcgaggcttg gccggcggat gtgcgccatg cgctggaaga
     3901 gatgacggaa ggcgcgttct agagctattt cggtctcaac agaatcactc tcccaccatg
     3961 ggcgggcttg atgttcagcc cggggacata gcggacacct gttcggagac atgactgacg
     4021 gtttt
//
LOCUS       DATMDK010000296         3748 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1738231,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000296 DATMDK010000000
VERSION     DATMDK010000296.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3748)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3748)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3748
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1738231"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..218
                     /locus_tag="VNN98_05725"
     CDS             <1..218
                     /locus_tag="VNN98_05725"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61630.1"
                     /translation="EAAEAYMRWLPLINYENRQCGLQAAKILMEVGGVIKSGAVRHPL
                     QPVSPAIRAGLIETARRLDPLVLRWSR"
     gene            248..1825
                     /locus_tag="VNN98_05730"
     CDS             248..1825
                     /locus_tag="VNN98_05730"
                     /inference="COORDINATES: protein motif:HMM:NF018647.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046556 - alpha-L-arabinofuranosidase
                     activity [Evidence IEA];
                     GO_process: GO:0046373 - L-arabinose metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-L-arabinofuranosidase C-terminal
                     domain-containing protein"
                     /protein_id="HWM61631.1"
                     /translation="MKISRRTMLAASASAPLIMAAGPAAAASASINIHSARHRGEIDK
                     KIFGNFIEHLGRCITGGIFDEGSPLSDKEGFRKDVMTAVKDMGVPFLRWPGGNFSSNY
                     NWMDGIGPRDKRPPRLEMAWGTVEDNRFGTHEFMDYIEKVGAEPYICMNLGTGSWTEA
                     QQWVEYVNGTQDTEITRLRKKNGRDKPWKVKYWGLGNEMDGYWQMGHRSAPDYAAFAL
                     EAAKLAKLTDPDVKLIAAGASNFRPGSDWIGWNRTVLESLKDYADYISLHLYVGNAAG
                     DYADFVASPLEMDRKIDTLAGLINAAMASRTDHVTGQLAKDGRKIYIALDEWNVWYRA
                     RGDNQRGRRILEEHYNLEDALVVAGFLNSLINHADVVKIANLAQLVNVIAPIFTNDKD
                     LFLQTIYYPLQLFSTHVKGNSLELLVDGPSYKSKRFDKVPYIDASGSLDGGNLVLNVV
                     NRHPDQAMDVVIGLEDKDFSGAAAVSEVNGPDIKAQNDFGKTPVGTRNSSVNAGGNSL
                     TYSFPPHSYTQLKAALT"
     gene            1979..2410
                     /locus_tag="VNN98_05735"
     CDS             1979..2410
                     /locus_tag="VNN98_05735"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61632.1"
                     /translation="MSVTPSGVGDPHAIVCRAPQALTDSGAMGPKLCMHNSVWARLTL
                     TGQDLSADGKSVFARPTTADPTGEGNPDAVTCRRPVPVTASRTRHGPEVCLTNRYWKE
                     LAANQKRVDTNGQIVSTRIYGPAGAGPDGIPVVAAEMSPPL"
     gene            complement(2449..>3748)
                     /locus_tag="VNN98_05740"
     CDS             complement(2449..>3748)
                     /locus_tag="VNN98_05740"
                     /inference="COORDINATES: protein motif:HMM:NF024214.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="NTP transferase domain-containing protein"
                     /protein_id="HWM61633.1"
                     /translation="AAGKSKSWSNRSSDMRRTTLEKLMAARRDGRVLVRALEIESGDE
                     RLIDPALDCSALGLAAAAAAEDDASRRVTLEGRTWLLTVYNPPWEIVIVGAVHIAQAL
                     TALAAPAGYRVRVIDPRAPYATEERFPGVTIRHSWPDEALAAQPLTGRSALVVLAHDP
                     KLDDAALAAGLRSPAFYIGALGSHRTQALRLARLRAQGFFAAEVAKIHGPVGLAIGAR
                     TPGEIAIAILAELVQHRRAPKNARIAGIVLAAGASSRMGHNKLTAPVNAKPMIRHAVE
                     AALAAGLDPVIVVTGHDAAAIRGALGGAAVRFVQNDDFVRGLSTSLQAGIGAVPSTCE
                     GAMVLLGDMPGIGPNLIGRLRAAFAPGRAICVATARGQRGHPVLWGRQFFAQMLELNG
                     DAGGRTLMAAHEDQLCEVEAGDDTPLADIDTPEVLAAYRG"
BASE COUNT          705 a         1204 c         1189 g          650 t
ORIGIN      
        1 aggaggctgc tgaagcctat atgcgctggc ttcccttgat caactatgaa aatcggcaat
       61 gtggcctgca ggccgccaag atactgatgg aggtgggcgg ggtcatcaaa tccggtgccg
      121 tgcggcaccc gctccagcct gtgtctccgg ccatccgcgc cgggctgatc gaaacggcac
      181 gccggttgga tccattggtg ctacgttggt cccgatagga agcgggcaat tgggttgggg
      241 acgcgacatg aagatttctc gcaggaccat gctggcggcc tcggcatccg cccccctgat
      301 catggcggct ggacccgcgg ccgcagcgtc cgccagcatc aatatccaca gcgcgcgtca
      361 tcgcggtgaa atcgacaaga agatcttcgg caacttcatc gagcatctgg gacgctgcat
      421 caccggcggc atcttcgacg aaggctcgcc gctgtcggac aaggaaggct tccgcaaaga
      481 cgtcatgacg gcggtgaagg atatgggtgt gcccttcctg cgctggccgg gcggaaattt
      541 ctcctccaac tacaattgga tggacggcat cggcccgcgc gacaaacgtc cgccgcgcct
      601 ggagatggcc tggggcacgg tcgaggacaa ccgcttcggc acccatgaat tcatggacta
      661 tatcgagaag gtcggcgccg agccgtatat ctgcatgaat ctcggcaccg gcagttggac
      721 cgaggcccag caatgggtcg agtatgtcaa cggcacccag gacactgaga tcacccggct
      781 gcgcaagaag aacggccgcg acaagccctg gaaagtgaaa tattggggcc tgggcaacga
      841 gatggacggc tattggcaga tgggccatcg ctcggccccc gattatgccg ccttcgcgct
      901 ggaagcggcc aagctggcca agctgacgga tccagacgtc aagctgatcg cggcgggtgc
      961 gtccaatttc cgccccggct cggactggat cggttggaat cgcaccgtgc tggagtccct
     1021 caaggactat gccgactata tctcgctgca tctctatgtc ggcaatgcgg cgggcgacta
     1081 tgccgatttc gttgcaagcc cgctcgagat ggatcggaag atcgataccc tggctgggct
     1141 gatcaacgcc gccatggcca gccgcaccga ccatgtcacc ggtcaactgg ccaaggacgg
     1201 ccgcaagatc tacatcgcgc tggacgaatg gaatgtgtgg taccgcgccc gcggcgacaa
     1261 ccagcgcggc cgccgcatcc tggaagagca ttacaatctg gaagacgcgc tggtcgtggc
     1321 gggtttcctg aattcgctga tcaatcatgc cgatgtggtc aagatcgcca atctggcgca
     1381 gctggtgaat gtgatcgccc cgatcttcac caacgacaag gaccttttcc tccagaccat
     1441 ctattatccg ttgcagctgt tcagcaccca tgtgaaaggc aacagcctgg aattgctggt
     1501 ggacggcccg tcctacaaga gcaagcgctt cgacaaggtg ccttacatcg atgcctcggg
     1561 ttcactggac ggcggcaatc tggtgctcaa tgtcgtcaat cgtcacccgg atcaggcgat
     1621 ggacgtggtg atcgggctgg aagacaagga tttttccggc gccgcggcgg tgtccgaagt
     1681 caatggtccc gatatcaagg cccagaatga tttcggcaag acgccggtcg gcacccgcaa
     1741 cagcagcgtc aatgccggcg gcaacagcct gacctacagt ttcccgccgc actcctatac
     1801 ccagttgaag gcggctttga cgtaaggccg agacatagct tgagaacgcg cctgccggag
     1861 cgtaaaatcc ccgccgcagc ggctgaggat caatgtcatg cgcatgctct ccatcgcttt
     1921 tctggtcttt ttcgcagcgc ctgtcttggc ggcggctgat gcttcggatc ctccggttat
     1981 gtccgtgacc cccagcggcg tgggcgatcc gcatgccatt gtctgccgcg ccccgcaggc
     2041 cttgacggac tccggcgcga tgggccccaa gctctgcatg cacaacagcg tctgggcgcg
     2101 gctgaccctc accggtcagg atctcagcgc cgacggcaaa agcgtgtttg cgcgcccgac
     2161 cacggccgac ccgacagggg aagggaatcc cgacgccgtc acctgccgcc ggccggttcc
     2221 ggtcaccgcc agccgcaccc ggcatgggcc ggaggtctgc ttgaccaacc gctattggaa
     2281 agaactggcc gcaaaccaga agcgcgtcga caccaacgga cagatcgtca gcacccgcat
     2341 ctatggaccg gcgggggccg ggccggacgg tatccccgtc gtggcggccg aaatgtcgcc
     2401 gccgctttaa gggccggcac gtttctctat tgaaccgaga atgaaaggtc agcctctgta
     2461 ggccgcaagg acctcgggcg tgtcgatgtc ggccagcggt gtgtcatcgc cggcttcgac
     2521 ttcgcagagc tgatcttcat gggcggccat cagggtacgg cccccggcat cgccgttcaa
     2581 ttccagcatt tgtgcgaaga actgccgtcc ccacaagacc ggatggccgc gctggccgcg
     2641 cgcggtcgcc acgcagatgg cgcggccggg cgcgaaggcg gcgcggagac gtccaatcaa
     2701 attaggcccg ataccgggca tgtcgcccag cagcaccatc gcgccttcgc aagtgctggg
     2761 cacggcgccg atccccgctt gcagcgaggt gctgaggccg cgcacaaagt cgtcattctg
     2821 cacaaagcgc acggccgcgc cgcccagcgc accgcggatc gcggcggcgt catggccggt
     2881 gacgacgatg accggatcca ggcccgccgc cagcgccgcc tccacggcat ggcgtatcat
     2941 gggcttggca ttcaccggcg cggtcagctt gttgtggccc atgcggctgg aggcgcccgc
     3001 cgccagtacg atgcctgcga tgcgcgcatt tttgggcgcg cggcggtgtt gcaccaattc
     3061 ggccaggatg gcgatggcga tctcgccggg cgtgcgcgcg ccgatggcga ggccgacggg
     3121 gccatgaatc tttgcgactt cggcggcgaa aaaaccttgc gctcgaagcc gcgccagccg
     3181 cagtgcttgc gtgcgatgcg agcccagtgc gccgatatag aatgctggcg aacgcaatcc
     3241 cgctgccagc gccgcgtcat ccagcttggg atcgtgggcc agcaccacca acgcgctgcg
     3301 gccggtcaga ggctgcgccg ccagggcttc gtcgggccag ctatgccgga ttgtcacgcc
     3361 gggaaagcgt tcttcggtcg cgtagggcgc gcggggatcg atcacgcgca cccgataacc
     3421 ggcgggcgcc gccaatgccg tcagcgcctg ggcgatatgc accgcaccga caatgacgat
     3481 ttcccagggc ggattgtaga ccgtcagcaa ccaggtgcgg ccctccaagg tgacgcggcg
     3541 gctggcatcg tcctcggcgg cggctgctgc cgccagaccc agggctgagc aatccaaagc
     3601 agggtctatc agccgctcgt cgccgctttc aatctccaac gcgcgcacca gcacacggcc
     3661 atcgcgccgc gccgccatca acttttcgag tgtcgtgcgc cgcatgtcag aggatcggtt
     3721 cgaccaggat ttcgatttgc ccgccgca
//
LOCUS       DATMDK010000297         3250 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2426986,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000297 DATMDK010000000
VERSION     DATMDK010000297.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3250)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3250)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3250
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2426986"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(175..858)
                     /locus_tag="VNN98_05745"
     CDS             complement(175..858)
                     /locus_tag="VNN98_05745"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61634.1"
                     /translation="MLNDKDRTRISDAITAAESKTSGEIFCVLTGRVSRYREIPLLWA
                     TVAAFLVPPLLVMTGLHRLALASIFTSWTDDSARAMEGLILRALSTYGLVQAGVFLII
                     AIIVAIPGVRRIMTPGPLKSHRVREMARQHFVAAGARLSDAEPHILIYASLADRRVEL
                     VAHDNIHKAVGEGPWHAAVAAVVEGMKTGKPADGMVQAIEICGAALAEHFPPDGASKN
                     HLPNTVLET"
     gene            complement(858..1604)
                     /locus_tag="VNN98_05750"
     CDS             complement(858..1604)
                     /locus_tag="VNN98_05750"
                     /inference="COORDINATES: protein motif:HMM:NF016424.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TPM domain-containing protein"
                     /protein_id="HWM61635.1"
                     /translation="MMRLAAALLAFFVVIAPAAAAPKFPALTGRVVDDAGILSSETKS
                     DLTQKLAALEQKTSRQLVVVTVPSLGGYEISDYGYQLGRAWGIGQAKLNNGILLIVAP
                     SEHKTRIEVGYGLEPIVTDAFSSVVIQTQVLPKFRSGDFNGGVEAGVDALIQQLSLDP
                     SEAEKRAAAAEQQPQSDNSGGAISGFLIMLFIFIAIARVFGGWGLLPFLFMGGGRGGG
                     FGGRDSGGFGGGSFGGGGGSFGGGGSSGSW"
     gene            complement(1605..2270)
                     /locus_tag="VNN98_05755"
     CDS             complement(1605..2270)
                     /locus_tag="VNN98_05755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004732432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LemA family protein"
                     /protein_id="HWM61636.1"
                     /translation="MTILRQVPKLLAALGIALALAGCGVNTIPTKDQAVKARWADVQA
                     AYQRRNDLIPNLANTVAGYAAQEKSVLIAVTQARASATQVKVDASTITDPARFAQFQQ
                     AQDKLSGVLGRLMAISENYPDLKSNQNFLALQSQLEGTENRIEISRRDYNAAVQDYNT
                     ELVTVPGSLWAATLYKSYKQATPFAASAAAQTAPVVSFPGATAAPPPSPAAAQPGTQP
                     TKP"
     gene            2570..>3250
                     /locus_tag="VNN98_05760"
     CDS             2570..>3250
                     /locus_tag="VNN98_05760"
                     /inference="COORDINATES: protein motif:HMM:NF013324.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005743 - mitochondrial inner membrane
                     [Evidence IEA];
                     GO_component: GO:0035632 - mitochondrial prohibitin
                     complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prohibitin family protein"
                     /protein_id="HWM61637.1"
                     /translation="MSSPWVPQNKLPQFKPPQWMPGAFGAGVVALVFLMLVLSTYFTI
                     DQGERGVILHNGAIVGEAEPGLHFKMPIITSIEKISVQIQKESFEKTPDADLRMQAYS
                     RDQQPATIALSVNFHVTDASAVYSQYGSLMSMESRVINPKTYEQLKNVFGQFDAADAI
                     QKRASLNAKVYDAIRTAVRGPVAIDSVQIEDITFSAQYEAAVEARMQAIVKQQQAEAD
                     KQKRIIDAD"
BASE COUNT          630 a         1066 c          973 g          581 t
ORIGIN      
        1 tgtcagctat gtctccgaac aaccgtcaat cttctccccg gactgaacac ttgacccgcc
       61 catccagagt cacagacgcg aggctatcag tgactgccct ggatggccgg gtcgtggccc
      121 ggccatggtg agaagtggga cactcaacat ctcatacgaa ggaccagagg cgtcttaagt
      181 ctcaagaacg gtgttgggca aatggttctt ggacgccccg tcgggcggga aatgctcggc
      241 caatgccgcg ccgcaaatct caatcgcctg gaccatgccg tcggcgggct tgcccgtctt
      301 catgccctcc accacggcgg ccaccgccgc atgccacggc ccctcgccca cggccttatg
      361 gatattgtca tgcgccacca gttcgacccg gcggtcggcc agggaagcat agatcaggat
      421 atgcggctcg gcgtccgaca gtcgcgcccc ggcggctacg aaatgctgcc gcgccatctc
      481 ccgcacccgg tgactcttca ggggtcccgg ggtcatgatg cggcgcacgc ccggtatcgc
      541 cacgatgatg gcgatgatca ggaacacacc cgcctgcacc agcccataag tggacagcgc
      601 ccgcaggatc agcccttcca tggcgcgggc gctatcgtcg gtccagctgg tgaagatgct
      661 ggccagcgcc aggcggtgca gccccgtcat caccagcagc ggcggcacca ggaaggccgc
      721 caccgtcgcc catagcagcg ggatttcgcg gtagcgcgac acccgccctg tcagtacaca
      781 gaatatctcg ccggaggttt tactctccgc cgcggtgatc gcatcgctga tgcgggtccg
      841 gtctttatcg ttcagcatca ccaactccca gacgagccgc cgccgccgaa gctgccgcct
      901 ccgccgccaa agctgccgcc gccgaagccg ccgctatccc tgccgccaaa gccgccgccg
      961 cgcccaccgc ccatgaacag gaagggcagc aatccccagc cgccgaacac ccgggcgatg
     1021 gcgatgaaga taaagagcat gatcaggaaa ccgctaatgg ctccgccgct attgtcactc
     1081 tgcggctgct gctcggcggc tgcggcgcgt ttctcggcct ccgacgggtc cagcgacaat
     1141 tgctggatca gcgcatcgac ccccgcctcc acgccgccgt tgaaatcgcc gctgcggaat
     1201 ttgggcaaca cctgggtctg gatgacgacc gacgaaaagg cgtcggtgac aatcggctcc
     1261 aggccatagc ccacctcgat gcgggtctta tgttcgctgg gcgcgacaat gagcaggatg
     1321 ccgttgttca acttggcctg cccgatgccc caggcacggc ccaactgata gccgtaatcg
     1381 gaaatctcat agccgcccag cgacggcacc gtcaccacta ccagctgacg cgaggtcttt
     1441 tgttccagcg ccgccagctt ctgcgtcagg tcggattttg tctcggatga cagaatgccc
     1501 gcgtcatcca ccacccgccc ggtcagcgcc ggaaatttcg gcgctgccgc agcgggggcg
     1561 ataacaacaa agaatgcgag taaggccgcg gccagccgca tcatttatgg cttggtcggc
     1621 tgggtgccgg gctgtgcggc cgccggagat ggcggcggcg cagcggtagc gcctgggaaa
     1681 ctcaccaccg gcgcggtttg cgcagcggcg ctggcggcaa acggcgtcgc ctgcttgtac
     1741 gacttgtaca aggtggcggc ccatagcgat ccggggacgg tcaccagctc ggtgttataa
     1801 tcctgcaccg ccgcattata gtcgcggcgc gaaatctcga tgcggttctc ggtgccttcc
     1861 agctgcgact gcagcgccag gaagttctgg ttggatttca agtcgggata attctcgctg
     1921 atcgccatca gccgccccag aacgcctgac aatttgtcct gcgcctgctg gaattgcgcg
     1981 aaccgggcgg gatcggtgat ggtggaagcg tccaccttga cctgggtcgc cgaagcgcgc
     2041 gcctgggtca ccgcgatcag caccgatttc tcctgcgccg catagccggc cacggtgttg
     2101 gccaggttgg ggatcaggtc gttgcggcgc tgataggccg cctgcacatc ggcccagcgg
     2161 gctttcaccg cctggtcctt ggtgggaatg gtgttgacgc cgcagcctgc cagcgccagc
     2221 gcaatgccca gcgcggccag aagcttcggt acctgtcgca agatcgtcat aggcgctcct
     2281 tcgtcaatgc ttggtcaatc cttgggggga taatacccgc gccgaaagat ggggctttgc
     2341 ggaggaaccg caagagctaa attggaaaaa acgcccttga tttcccgcta agcctcctta
     2401 aggcacgccc cgctttgacc gggatcaagg attaatccac cccgccccga ttctgcgcta
     2461 agctcgggct tcagactttg gcgcgggccc gcgctgcgca ccccaatccg gacacaagga
     2521 caaaagccat ggcgatcaaa actgttatgc tgcgcgccgg gtgcgtgctt tgagttcgcc
     2581 ctgggtgccg cagaacaagc taccacaatt caagcccccg caatggatgc caggagcgtt
     2641 cggcgccggc gtggtggcgc tggtgttcct gatgctggtc ttgtcgacct atttcaccat
     2701 cgatcagggc gagcgcggcg tgatcctgca caacggcgcc attgtcggcg aagccgagcc
     2761 gggactgcac ttcaagatgc cgatcatcac cagcatcgaa aaaatttcgg tacagattca
     2821 gaaggagagt tttgaaaaga ctcccgacgc cgatctccgg atgcaggcct attcccgcga
     2881 ccagcagccc gcgaccatcg cgctgtcggt gaattttcac gtcaccgacg cctccgccgt
     2941 ctattcccaa tatggctcgc tgatgagcat ggaatcgcgg gtgatcaatc ccaagaccta
     3001 cgaacagctg aagaatgtct tcggccagtt cgacgccgcc gatgccatcc agaaacgcgc
     3061 ctcgctgaac gcgaaagttt acgatgcgat tcgcaccgcg gtacgcggac cggtggcgat
     3121 cgacagcgtc cagatcgagg acatcacctt ttcagcccag tatgaagctg ccgtggaggc
     3181 gcgcatgcag gctatcgtca agcagcagca ggccgaggcc gacaagcaga agcgcatcat
     3241 cgatgccgat
//
LOCUS       DATMDK010000298         3190 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1523329,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000298 DATMDK010000000
VERSION     DATMDK010000298.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3190)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3190)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3190
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1523329"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..272)
                     /locus_tag="VNN98_05765"
     CDS             complement(<1..272)
                     /locus_tag="VNN98_05765"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HWM61638.1"
                     /translation="MLEIKNLHVAIGGKEILKGLTLSIAAGEVHAIMGPNGSGKSTLS
                     YVLAGRAGYDITEGSISYNGEDLAALAPEDRAAKGVFLAMQYPVEIP"
     gene            complement(421..1872)
                     /gene="sufB"
                     /locus_tag="VNN98_05770"
     CDS             complement(421..1872)
                     /gene="sufB"
                     /locus_tag="VNN98_05770"
                     /inference="COORDINATES: protein motif:HMM:NF008773.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly protein SufB"
                     /protein_id="HWM61639.1"
                     /translation="MSIAAETKQQVADIGEKYKYGFVTDIEMDMAPKGLSEDTVRFIS
                     AKKSEPGWMLEWRLGAYKRWLTMREPNWARVHYPKIDYQAAYYYAAPKNTPLKQSLDE
                     VDPKLLETYKKLGIPLQEQMALAGVAVDAVFDSVSVATTFKEKLNEAGVIFCPISEAI
                     RDYPELVKKYLGTVVPVTDNFFATLNAAVFSDGTFVYVPKGVRCPMELSTYFRINASE
                     TGQFERTLIIADEGSYVSYLEGCTAPKRDENQLHAAVVELVALDNAEIKYSTVQNWYP
                     GDENGLGGIFNFVTKRGDCRGKKSKISWTQVETGSAITWKYPSCILRGDDSVGEFYSI
                     AIANHFQQADTGTKMIHLGANTRSRIISKGISAGKAQNTYRGLVSVYGKAKNARNYTQ
                     CDSLLIGSECGAHTVPYIESRNPTARIEHEATTSKIAEDQLFYCLARGIPQDEAVSLI
                     VNGFCREVLQQLPMEFAVEAQKLVGISLEGSVG"
     gene            complement(1872..3029)
                     /locus_tag="VNN98_05775"
     CDS             complement(1872..3029)
                     /locus_tag="VNN98_05775"
                     /inference="COORDINATES: protein motif:HMM:NF012488.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine desulfurase family protein"
                     /protein_id="HWM61640.1"
                     /translation="MHYLDHNATSPLRPESLSAMTHALSVGGNPSSVHASGRAARAVM
                     EEAREKVAALVGAGAESVIFTSGATEACSLALFGAAEGSLEGESRITRVFVSAIEHKA
                     VLAAADRLAERFPWIRVTTLAVTAEGVIDLEALRVALREGKGRALVAVMAANNEIGTV
                     QPIAEVSKLAREAGALLLVDAVPAAGKIALDFSLCDYMVLSAHKMGGPQGSGALLVAA
                     GAPLAPQLAGGGQQKGLRAGTENLSGIAGFGAAARALADGEGERARIVHLRDHFEAAL
                     KQAAPEAVIFGMEQKRLCSTSGFAIPGVRAETALIGLDLDGVMMSAGSTCSSGKVSVS
                     HVLAAMGVDEALAACALRASFGWSSTMEDVNAAVASLIKLRERVHSNNKAA"
BASE COUNT          603 a         1028 c          937 g          622 t
ORIGIN      
        1 ggaatttcca ccggatactg catggccaga aacacaccct tggcggcgcg gtcttccggc
       61 gccagcgccg ccagatcttc accgttatag ctgatgctgc cttcggtgat gtcgtagccg
      121 gcgcggcctg ccagcacata agatagcgtg gacttgcccg aaccgttagg ccccatgatg
      181 gcatgcactt cgccggccgc aatcgacagg gtcaggccct tgaggatttc cttgccgccg
      241 attgcgacgt gaagattctt gatctcaagc atctttaaaa atcccaaatt gtcatggccc
      301 ggccctcttt taattggaag atgggcggac cacccagctg gtgcgccacg atttgcaaga
      361 ccatttttct cgtcacctgg gtggcccgca tttgcgggcc atgacatgtg tggaaacggt
      421 tcatccgacg cttccttcca gcgaaatgcc gaccagcttc tgcgcctcga ccgcgaattc
      481 catgggcaat tgctgcagaa cttcgcggca gaaaccattg acgatcagcg acaccgcttc
      541 gtcctgcggg atgccgcgcg ccaggcaata gaacagctgg tcttcggcga tctttgaagt
      601 ggtcgcttca tgttcgatgc gcgccgtggg attgcggctt tcaatatagg gcacggtatg
      661 ggcgccgcat tcggagccga tcagcaggga atcgcactgg gtatagttgc gcgcattctt
      721 ggccttgcca tagacactga ccaacccgcg ataggtgttc tgcgccttgc ccgccgaaat
      781 gcccttagag atgatgcgcg agcgggtatt ggcgcccagg tgaatcatct tggtgccggt
      841 atcggcctgc tggaaatggt tggcgatggc gatggagtag aattcgccca cgctgtcgtc
      901 gccgcgcagg atgcagctgg gatatttcca ggtgatggcc gagccggttt ccacctgggt
      961 ccagctgatc ttggacttct tgccgcggca atcgccgcgc ttggtgacga agttgaagat
     1021 cccgcccaac ccgttttcgt cgccgggata ccagttctgc accgtggaat atttgatctc
     1081 ggcattgtcc agcgccacca gttcgaccac cgcggcatgc agctggttct cgtcgcgctt
     1141 gggcgcggtg cagccttcca gatagctgac ataactgcct tcatcggcga tgatcagggt
     1201 gcgctcgaac tggccggtct cagacgcatt gatgcggaaa taggtcgaca gctccatggg
     1261 gcagcgcacg cccttgggga catagacaaa ggtgccgtcg gaaaacaccg ccgcgttcaa
     1321 ggtggcgaag aaattgtcgg tcaccggcac cacggtaccg agatatttct tcaccagctc
     1381 gggatagtcg cggatcgctt cgctgatggg acagaaaata acccccgcct cattcagctt
     1441 ttccttgaaa gtggtggcca ctgaaacact gtcgaacacc gcgtccaccg ccaccccggc
     1501 caaggccatc tgctcctgca gcggaatgcc cagcttcttg taggtctcca gcagcttggg
     1561 atcgacctca tccagcgact gtttcagggg tgtgttcttg ggcgccgcgt aataataagc
     1621 ggcctgatag tcgatcttgg gataatgcac ccgcgcccag ttcggctcgc gcatcgtcag
     1681 ccagcgcttg tacgcaccca gccgccattc cagcatccag cccggctcgc ttttcttggc
     1741 ggaaataaag cgcaccgtgt cttcggacag gcccttgggc gccatgtcca tttcgatgtc
     1801 ggtgacgaag ccgtatttgt acttctcgcc gatatcggcg acctgctgtt tggtttcggc
     1861 ggcgatggac atcaggcagc cttgttgttc gaatgcacgc gctcgcgcag cttgatcagc
     1921 gacgccaccg ccgcattgac gtcctccatg gtcgaggacc agccgaagct ggcgcgcaaa
     1981 gcacaagccg caagcgcctc atccacaccc atcgcggcca ggacatggct gacggatact
     2041 ttgccgctgg agcaggtgga acccgcgctc atcatcacgc cgtccagatc caggccgatc
     2101 agcgcggttt ccgcccgaac cccgggaatg gcaaagccgg atgtgctgca cagccgcttc
     2161 tgttccatcc caaagataac ggcttccggc gccgcctgtt tcagagcggc ttcaaaatga
     2221 tcgcgcaaat gaacaatacg ggcgcgctcg ccctcaccgt cggccagagc acgcgccgct
     2281 gcgccgaagc cggcgatgcc ggacaggttt tccgtacccg cgcgcaaacc cttttgctgg
     2341 ccgccgcccg ccaactgcgg cgccaagggc gcaccggctg cgaccagcaa tgcgccggac
     2401 ccctgcggcc cgcccatctt gtgtgccgac agtaccatgt agtcgcacag cgaaaaatcc
     2461 agcgcgatct tgccggcggc aggcaccgca tccaccagca gcaaggcgcc ggcctcgcgc
     2521 gccagcttcg acacttccgc gatgggctgc accgtgccga tttcgttgtt ggcggccatc
     2581 acggccacca gggcgcggcc cttgccttcg cgcaacgcca cgcgcaacgc ttcaagatca
     2641 atcacgccct cggccgtcac cgccagcgtc gtcacgcgaa tccaaggaaa acgttcggcg
     2701 agacgatccg cggcagcaag caccgcctta tgctcgatgg cggagacaaa gacgcgcgtg
     2761 atgcgggact cgccttccag ggaaccttcc gccgcgccga acagggccag actgcaggct
     2821 tccgtggcgc cgctggtgaa gatcaccgac tccgcgccgg cgcccaccag cgccgccact
     2881 ttctcgcgcg cctcttccat gacggcgcgc gcggcgcgtc cgctggcatg gacggaagac
     2941 ggattgccgc ccacgcttaa ggcatgggtc atcgccgaga gggactccgg gcgcaggggc
     3001 gatgtggcat tgtgatccag ataatgcatg gctttatgtc cgctcaggcg gccgcagtct
     3061 cgctgtccag catggcgttg agatcgttgc agggcttgga acggcccagc acgcggcgct
     3121 ccaccacatc ggccaggctg acggatgaca ggaagacgtg aatctgctgg cccagctctt
     3181 cccacagatc
//
LOCUS       DATMDK010000299         4641 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_610714,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000299 DATMDK010000000
VERSION     DATMDK010000299.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 4641)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4641)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4641
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_610714"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..748
                     /locus_tag="VNN98_05780"
     CDS             <1..748
                     /locus_tag="VNN98_05780"
                     /inference="COORDINATES: protein motif:HMM:NF018647.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046556 - alpha-L-arabinofuranosidase
                     activity [Evidence IEA];
                     GO_process: GO:0046373 - L-arabinose metabolic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="alpha-L-arabinofuranosidase C-terminal
                     domain-containing protein"
                     /protein_id="HWM61641.1"
                     /translation="KDRVPGDTSVNWRGPATGFDESQWGVTLSKTLKMDDMIVRLSSM
                     MDKYDPQKQVGLYVDEWGSWYDQEPGSHPGFLYQQNTLRDAEVAALNLNIFHRHTDRV
                     KMANIAQMINVLQAMILTDKDKMVLTPTYHVFDMYQVFMGAVPYPASVSGPNYKEGVP
                     MVDVSAARGKDGKLYLAIVNTDPGHAVQVVTNLTGTAHGRILTAIAMDAHNTFDKPNM
                     VHPLPFSSSTEGGKMSFDMPAKGVAVVAVD"
     gene            complement(749..1684)
                     /locus_tag="VNN98_05785"
     CDS             complement(749..1684)
                     /locus_tag="VNN98_05785"
                     /EC_number="5.1.3.-"
                     /inference="COORDINATES: protein motif:HMM:NF008277.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016857 - racemase and epimerase activity,
                     acting on carbohydrates and derivatives [Evidence IEA];
                     GO_function: GO:0030246 - carbohydrate binding [Evidence
                     IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldose epimerase family protein"
                     /protein_id="HWM61642.1"
                     /translation="MVPDKAGHKDDVVLGYDTAQEYLSHPDFFGASVGRYANRIAKGK
                     FSLDGKTYTLATNDGPNSLHGGTKGFDKRMWKIDSVSNGPEAKVVLSYVSADGEEGFP
                     GELKVTATYSLNEKNELRLEYRATTSKPTVLNLTNHSYFNLSGNDTRDVMGNLVTLHA
                     ARFTPVDATLIPTGERRAVAGTVFDFRTPHPVGDRIRDAHDQQIRYGRGYDHNFIVDG
                     AAGTLRPAAVVQEPVSGRVLEMSASAPGVQFYTGNFLDGTFFGKNSRAYRQGDSICLE
                     PGVFPDSPNHADFPTARLNPGQSYINTIVYKFSAK"
     gene            complement(1711..1869)
                     /locus_tag="VNN98_05790"
     CDS             complement(1711..1869)
                     /locus_tag="VNN98_05790"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61643.1"
                     /translation="MKSAILGALCATLSITGVHAATATRSDFGQLADGTKVEAVTLSN
                     GAGMSAKI"
     gene            1969..2169
                     /locus_tag="VNN98_05795"
     CDS             1969..2169
                     /locus_tag="VNN98_05795"
                     /inference="COORDINATES: protein motif:HMM:NF040386.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6356 family protein"
                     /protein_id="HWM61644.1"
                     /translation="MFQRLFLSHPQQAGESYFQHQRVALSFAWPLLGAGLAAMVHAVV
                     PGLCERTAGNIIRKLQARLEKR"
     gene            2188..4008
                     /gene="recQ"
                     /locus_tag="VNN98_05800"
     CDS             2188..4008
                     /gene="recQ"
                     /locus_tag="VNN98_05800"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: protein motif:HMM:TIGR01389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003678 - DNA helicase activity [Evidence
                     IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA helicase RecQ"
                     /protein_id="HWM61645.1"
                     /translation="MNQHAPQLSSDSKQRILKDVFGFDDFRPGQAAAMEALLAGRHVL
                     TVMPTGAGKSLCYQVPALVLGGLTLVVSPLVALMQDQVAALRLAGVAADTINSSIDRD
                     ENVAAWRRVTTGETRLLYLAPERLMTARMLEALARIDIRLIAVDEAHCISQWGPAFRP
                     EYEQLSRLRDIFPGVPIIALTATADEATRADIAARLFAGGVETLVLGFDRPNIKLSVA
                     ARDDGKGQLLDFVRRHAGRSGIVYCLSRKKTEETAAFLERSKVRALAYHAGMTKEARD
                     ANQNSFMTEAGVVMVATIAFGMGIDKPDVAYVFHTDLPGNLEAYYQEIGRAGRDGRPA
                     EAHMLFGAGDIRMRRMFIDDEEASAEHKRRAHGRLGTLIGYCETAACRRQILLQYFGE
                     SAEPCGNCDNCLDQAPLSDGTAQARIILAAVAQSGERFGAGHIIDLLRGAGTQKIKDR
                     GHDSLACFGSGAARRREEWQSLIRQMVVAGLLVPDEHGGLAITAKGAGLRRGEGLFQF
                     RASAPRSKVRADVAEAGQAGDPALLAALKAVRLRLARERQVPAYVIFSDRTLIDMAAR
                     RPRDLDGFAAVNGVGAAKLKDFGTIFLGAIAAHETVAAES"
     gene            complement(4005..4391)
                     /locus_tag="VNN98_05805"
     CDS             complement(4005..4391)
                     /locus_tag="VNN98_05805"
                     /inference="COORDINATES: protein motif:HMM:NF019590.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NIPSNAP family protein"
                     /protein_id="HWM61646.1"
                     /translation="MLAIARGALAKPTTGSGTMKIVCVIRYQIDPFQREAFEKRAEHL
                     GQIIPRNGGHLIGYFMPDEGTNDVAWGLIGFNSLAEYETYRARLRNDQDLAREDAIVG
                     SKRVILREERNFVRIVDGTFNIPPVG"
     gene            4381..>4641
                     /locus_tag="VNN98_05810"
     CDS             4381..>4641
                     /locus_tag="VNN98_05810"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61647.1"
                     /translation="MASIAVAAAAMVAAARLFTCWAVKDLMAASMALDGHPQFVDDQI
                     MDVEHREHGAAANIAGAIADPARARILYCLMDGHAQTSTELSV"
BASE COUNT          852 a         1395 c         1518 g          876 t
ORIGIN      
        1 caaggaccgg gtgccgggcg acaccagcgt caactggcgc ggccccgcca ccggcttcga
       61 cgaaagccaa tggggcgtta ccctgagcaa gaccttgaaa atggacgaca tgatcgttcg
      121 cctcagcagc atgatggaca aatacgatcc acagaagcag gtgggactct atgttgacga
      181 gtggggaagc tggtacgacc aggagccggg cagtcatccc ggcttcctct atcagcagaa
      241 cacgttgcgc gacgcggaag tggcggcgct caacctgaat atcttccacc gccacacaga
      301 tcgggtgaag atggccaaca tcgcccagat gataaacgtg ctgcaggcca tgatcctgac
      361 cgacaaggac aagatggtgc tgacccccac ctatcatgtc ttcgacatgt atcaggtctt
      421 tatgggcgcc gtgccctatc cggccagcgt atcggggccg aactataaag agggcgtgcc
      481 gatggtcgat gtgtcggcgg cgcgcggcaa ggacggcaag ctctacctcg ccatcgtcaa
      541 caccgatccg ggccatgcgg tgcaggtggt gaccaacctc accggcacgg cgcatggccg
      601 catcctgacg gccatcgcca tggacgcgca caacacgttc gacaagccga acatggtgca
      661 tccgttgccg ttcagcagca gtacggaagg cggcaagatg tccttcgaca tgccggccaa
      721 gggcgtggcc gtggtggctg tggactagct acttcgcgct gaacttatag acgatggtgt
      781 tgatatagct ctgtcccgga ttcagccgcg cggtggggaa atccgcgtgg ttgggggaat
      841 ccggaaatac ccccggttcc aggcagatgg aatcgccctg gcgataggcg cggctgttct
      901 tgccgaagaa agtgccgtcc aggaagttgc cggtatagaa ctgcaccccc ggcgcgctgg
      961 cgctcatctc cagcacccgg cctgacaccg gctcctgcac cacggccgcg ggccgcaagg
     1021 tcccggcggc gccgtccacg atgaagttgt gatcatagcc gcggccatag cggatctgct
     1081 ggtcgtgggc atcgcggatc cggtcgccca ccgggtgggg ggtccggaag tcgaagactg
     1141 tgcccgccac ggcgcggcgc tcgccggtgg ggatcagggt ggcgtccact ggggtgaaac
     1201 gcgcggcatg cagggttacc agattgccca tcacatcgcg ggtgtcgtta cccgacaggt
     1261 tgaaatagga atggttggtg aggttcagca ccgtgggctt ggaggtggtg gcgcggtatt
     1321 ccaggcgtag ttcgttcttc tcgttcaaag aataagtggc agtgactttg agttcgccgg
     1381 ggaagccctc ttcgccgtcg gcgctgacat agctgagaac gaccttggcc tccggcccgt
     1441 tcgacaccga gtcgattttc cacatccgct tgtcgaagcc cttggtgccg ccatgtagcg
     1501 aattggggcc gtcattggtc gccagcgtgt aggtcttgcc atccaggctg aacttgccct
     1561 tggcgatgcg gttggcatag cggcccaccg aagcgccgaa aaagtcggga tggctgagat
     1621 attcctgcgc cgtgtcatag cccagcacga catcgtcctt gtggccggcc ttatccggca
     1681 ccattagcga ttgcaaggtc gcgcccaggg tcatattttt gcggacatgc ccgcgccatt
     1741 gctcagggtc acggcttcca ccttggtgcc gtcggcaagt tggccgaaat cgctgcgcgt
     1801 ggcggtggcg gcatggacac cggtgatcga caaagtggcg cacagcgccc cgagaatcgc
     1861 agacttcatg atccctccca ttttctggtg cccaatattc aagcaaacga aacacgacac
     1921 aagtccgcga aactgtctta caatgatgcg tcgcaataag gggttatcat gttccagcgg
     1981 ctgtttctgt cccatccgca acaggcgggg gaaagctatt tccagcatca gcgcgtggcg
     2041 ctgtcctttg cctggcccct gctgggggcg ggcctggcgg ccatggttca tgccgtcgtc
     2101 cccggccttt gcgagcgcac cgccggcaac atcatccgca agctgcaggc ccggttggag
     2161 aagcgatagc ctgtgctaca agaccgcgtg aatcagcacg cgccacaact ttccagcgat
     2221 tccaagcagc gcatcctcaa ggatgtgttc gggttcgacg attttcgtcc cggccaggcg
     2281 gccgcgatgg aagcgctgct ggcggggcgc catgtgttga ccgtcatgcc gaccggcgcg
     2341 ggcaaatcgc tgtgttatca ggtgccggcg ctggtgctgg gcgggctgac cctggtggtc
     2401 tcgccgctgg tggccctgat gcaggaccag gtcgcggcgc tgcgcctggc gggcgtggcg
     2461 gccgacacca taaattcctc catcgaccgc gacgagaatg tcgctgcttg gcgccgggta
     2521 acgacaggcg agacgcgcct tttatacttg gcgccggagc ggctgatgac ggcgcggatg
     2581 ctggaggcgc tggcgaggat cgacatccgc ctgattgccg tggacgaggc gcattgcatt
     2641 tcgcaatggg gcccggcttt ccgtcctgaa tatgaacagc tgtcgcgatt gcgcgatatt
     2701 tttcccggcg tgccgatcat cgctctgacc gcgacggcgg acgaggccac ccgcgcggac
     2761 atcgccgcgc ggctgttcgc tggaggggtc gagaccctgg tgttgggctt cgaccggccg
     2821 aacatcaagc tcagcgtggc ggcgcgcgat gacggcaagg gccagttgct ggatttcgtg
     2881 cggcgccatg ccgggcgcag cggcatcgtc tattgcctgt cgcgcaaaaa gaccgaagag
     2941 acggcggcgt ttctggagcg cagcaaggtg cgtgcgctgg cctatcatgc cggcatgacc
     3001 aaggaggcgc gcgacgccaa tcagaacagc ttcatgaccg aggcgggcgt ggtgatggtg
     3061 gcgaccatcg ctttcggcat gggcatcgat aagcccgacg tcgcctatgt ctttcacacc
     3121 gacctgccgg gcaacctgga agcctattat caggagatcg ggcgcgccgg ccgcgacggg
     3181 cgccccgccg aagcgcatat gttgttcggt gccggcgaca tccgcatgcg gcgcatgttc
     3241 atcgatgatg aagaggccag cgcggagcac aagcggcgcg cccatggccg gctgggcacc
     3301 ctgatcggct attgcgagac ggctgcgtgt cgccgccaga tcctgctgca atattttggc
     3361 gaaagcgccg agccttgcgg caattgcgac aattgcctgg atcaggcacc gctcagtgac
     3421 ggcacagcgc aagcgcgcat catcctggca gcagtggctc agtccggtga acgctttggc
     3481 gccgggcata tcatcgacct gttgcgcggc gcgggcacgc agaagatcaa ggatcggggc
     3541 catgatagct tggcctgttt cggcagcggc gcggcgcgca gacgcgaaga gtggcagtcg
     3601 ttgatccggc aaatggtggt ggccggcttg ctggtgcccg acgaacatgg cggcctcgcc
     3661 atcaccgcaa aaggcgcggg cctgcgccgc ggcgaaggcc tgttccagtt tcgcgcttct
     3721 gcgccgcgca gcaaggtgcg tgcggatgtg gcggaagctg ggcaggccgg cgatcccgcg
     3781 ctgctggccg cgctcaaggc cgtgcggctg cgcctggcgc gggaacgcca ggtgccggcc
     3841 tatgtgattt tctccgaccg gactttgatc gacatggcgg cgcgccgtcc gcgcgacctg
     3901 gatgggtttg cggccgttaa tggcgtgggc gccgccaagc tgaaggattt cggtacaata
     3961 ttcctgggcg ccatcgccgc gcatgagacg gtggcggcag aatcctagcc caccggagga
     4021 atgttgaacg taccatcgac aatccgcaca aaattccgct cctcccggag gataacgcgt
     4081 ttactgccca ctatcgcgtc ttcgcgggcc aaatcctggt cgtttctcaa acgggcgcga
     4141 taggtctcgt actcggcaag actattgaat ccgatcaggc cccaggcgac gtcgttggtt
     4201 ccctcatcgg gcatgaaata gccgatgaga tgaccgccat tgcgcgggat gatctgtccc
     4261 agatgttcgg cgcgcttttc gaaagcttcc cgctgaaacg ggtcgatctg atacctgata
     4321 acacaaacta ttttcatagt tccgctcccg gttgttggtt tcgccagcgc accgcgcgca
     4381 atggcgagca tcgcagttgc cgcggccgca atggttgccg ccgcgcgcct gttcacctgt
     4441 tgggccgtca aggacctcat ggccgcgagt atggcgcttg acggacatcc tcaattcgtt
     4501 gacgatcaaa tcatggatgt cgagcatcgg gagcatggcg cggcagcgaa tatcgccggg
     4561 gcgatcgcgg atcccgcgcg ggcgcggata ctttactgcc tgatggacgg tcatgcgcaa
     4621 acgagcaccg agctatcggt g
//
LOCUS       DATMDK010000300         7689 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_136813,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000300 DATMDK010000000
VERSION     DATMDK010000300.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 7689)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7689)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7689
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_136813"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..573
                     /locus_tag="VNN98_05815"
     CDS             <1..573
                     /locus_tag="VNN98_05815"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61648.1"
                     /translation="LAHDHDSALSAIADAYNMARLQRYQLRELSDLEHALQEFRTRTE
                     SAMSQLLSRTRGRFLSADAAVRGEDPAWPACGSEVMARAMEEERARARVRERLFGSFR
                     LGHAGWMLMLVLAENQTYTNELTVKSAAYAAGIPLSSALRKIVELCENGLLLRRNDPS
                     DNRRSFVALTERARTLLSEYLAAGRSDVKA"
     gene            complement(613..1077)
                     /locus_tag="VNN98_05820"
     CDS             complement(613..1077)
                     /locus_tag="VNN98_05820"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF025054.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HWM61649.1"
                     /translation="MIEIRDYRNSDCAALAEIFQRAVREIARKDYSPAQVAAWAPDVR
                     DMVAWGARRTAKPSFVAEYDGQVAGFTDLDGDGHIDMFFVNPDFQRRGVGSAMLRFLA
                     ARGGNERLKRLFSEVSITARPVFERHGFKVLAYQTVETNGQSLGNYRMEKQL"
     gene            complement(1074..2591)
                     /gene="trpE"
                     /locus_tag="VNN98_05825"
     CDS             complement(1074..2591)
                     /gene="trpE"
                     /locus_tag="VNN98_05825"
                     /EC_number="4.1.3.27"
                     /inference="COORDINATES: protein motif:HMM:TIGR00564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004049 - anthranilate synthase activity
                     [Evidence IEA];
                     GO_process: GO:0000162 - tryptophan biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate synthase component I"
                     /protein_id="HWM61650.1"
                     /translation="MIQPAFDAFAPGYGEGRAQLLYTRLVADLETPVSAFLKLGEGRD
                     NAFLLESVQGGETRGRYSIIGLKPDLIWRCRDGQAEINRAALQDENKFVPEAAKPLAS
                     LRALTRETQLTLPATLPPMATGLFGYLGYDMARQVENLPHPPPDTLGLPDAILLRPTI
                     TAIFDSVKDEIIVITPVWPDKNVDAKAAYARGLARLDEAVAALEAPAPHPAPTPTDLP
                     TGVAIESNMTKDEYFDVVARAKDYILAGDVFQVVPSQRFRRPFALPPFSLYRALRRLN
                     PSPYLYYLAMPGFQIVGSSPEVLVRLRGGKVTIRPIAGTRPRGKTPEEDKALAENLMA
                     DPKERAEHLMLVDLGRNDVGRVAKTGAVTVTDSFFIERYSHVMHLVSNVEGDIRDGLD
                     AVDALAAGLPAGTLTGAPKIRAMEIIDEFEKEKRGAAYAGAVGYFAADGSMDTCIVLR
                     TALVKDGTMYVQAGGGVVADSQPEAEYQETINKSKALLAAAEEAVRFASAAKKGQ"
     gene            complement(2599..4479)
                     /locus_tag="VNN98_05830"
     CDS             complement(2599..4479)
                     /locus_tag="VNN98_05830"
                     /inference="COORDINATES: protein motif:HMM:NF025010.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SurA N-terminal domain-containing protein"
                     /protein_id="HWM61651.1"
                     /translation="MHTLSKSWMATLLMGGLTLSFVAWGIADVFTGVSTAGVATVGST
                     DIGAQEFQRTYKNFLRNQGQQMGAEITPEMAQKMGLGQVALQQMVSRTALNNEAEHLG
                     LTASDATVVQNVRAMAPFRGTLGQFDRPTFIQAVQAAGYSEQQFLDEVRQDMTRDQLT
                     QAVEGNFLVPPTYAQAIFQYINEKRAADYVILSPEQAGDVPAPSNAVLSAYVKLHAER
                     FSTAEYRDADYAAIAPADVIGAITVSDAQIQQDYDAHKAIYVIAEKRDVQQIEFKTLA
                     EAAAARAKIGSGTSYEDLAASRGLKPAQMSLGTLAQSDLPDADRAKAIFALALNEVSQ
                     PIKTGFGGFVLARVTKIAPGSTKSLADAKEDIRKSLTNQLAANKLVDAVNAYTDARSG
                     GAELKEAAKKAGMRVARLGGVDVTGLKSDGSKADVPADPEFLPALFKGEVGEDTDPFP
                     TKLGAYYAIHVNGVTPPKLKPLDQVRAQALADWNTEQRSQMLGAKAQALAIQAAKDKS
                     LDNIARDLKVAIQHSPALGRETNDTMFNTAMVTKLFNTPAGGVDFGPQGLSGNYVIAR
                     VTGISHPKLDPRDPSFQAGAARFSQTVAGDFSISLANAARSRQGVKVNQKLVASLTGA
                     NQ"
     gene            4621..5379
                     /gene="tpiA"
                     /locus_tag="VNN98_05835"
     CDS             4621..5379
                     /gene="tpiA"
                     /locus_tag="VNN98_05835"
                     /EC_number="5.3.1.1"
                     /inference="COORDINATES: protein motif:HMM:NF012349.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004807 - triose-phosphate isomerase
                     activity [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="triose-phosphate isomerase"
                     /protein_id="HWM61652.1"
                     /translation="MRPLVAGNWKMNGLASSLGELVALKDALAKQPPACDVLICPPAT
                     LMAQAAWAVKDAFALGGQDCHAQDQGAFTGDISAEMLKDAGASYVIVGHSERRHYYGE
                     TDSDIAAKARAAWRAGLKAIICIGETESQRDAGDAHAICQSQLEASVPDGATPANTVL
                     AYEPVWAIGTGRTPTSGEITAMHAHIRSCLLRRLGPSAKEGAAQILILYGGSVKPDNA
                     NEILNLPEVSGALVGGASLKASDFLSIIGAIKAS"
     gene            5455..6405
                     /locus_tag="VNN98_05840"
     CDS             5455..6405
                     /locus_tag="VNN98_05840"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61653.1"
                     /translation="MSLSFDSVDVLIYDPVPSNRTATRATMYALGFRRTETVSSLETF
                     VEAMQKRPPDIALCEAQGAADELCATIQQMRQGGAGHNPFIVIIVTAWEKNTALINKV
                     VSSGADDLLLRPFSTALLGQRIEAHIERRKGFVITTDYVGPDRRKDTGRASNVELFEP
                     PNSLKMKAKDRMSGEAIARKLDTELKAAREKLTSEKLRRDAFQICILWRLIQDAQLLV
                     GKIPPELVKLQILTKSVEARSTDNEFAPALEWCQAVMAAAEGLALGVDRNASMHLLGH
                     AALSMHHIFHPEKSAAEQLSEIDATVALIRARNLAEALAS"
     gene            complement(6539..>7689)
                     /locus_tag="VNN98_05845"
     CDS             complement(6539..>7689)
                     /locus_tag="VNN98_05845"
                     /inference="COORDINATES: protein motif:HMM:NF019040.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF1501 domain-containing protein"
                     /protein_id="HWM61654.1"
                     /translation="KSALYAAPLFTAGRLYAAPAAGPRLLVVFLRGAYDAANILVPVS
                     SDFYYAARPTLAIPKGAALPLDSDWGLHPALKDSIYPLWQQKQIAFIPFAGTDDTSRS
                     HFETQDTIELGQPIGGTRNYQSGFLSRTAQLLSGTQPIAFTAQLPLSFRGGGAIPNIA
                     LNFTGKPSVNDRNAALIQAMYQGQDLAPAVAEGFQVQNEVYSAISGEMAAANRGAVTT
                     KGFELSAQRIGLLMQAKFNLGFVDIGGWDTHVNQGGADGYLAGRIGELGRGLAALQTA
                     LGPAWNDTVVIVVSEFGRTFRENGDRGTDHGHGSVYWVLGGGVKGGRIAGPQVAVTQA
                     NLFQDRDWPVLTDYRALIGGVLRKSYGLSQAQLAQIFPSAQPADLSLV"
BASE COUNT         1354 a         2395 c         2531 g         1409 t
ORIGIN      
        1 ctcgcacacg atcacgactc ggccctgtct gccatcgccg acgcctataa catggcgcgg
       61 ctgcagcgtt accagttgcg tgagttgtcg gacctggagc acgccctgca ggaattccgt
      121 acacggacag aatccgccat gtcgcagctt ttgtcgcgca cgcggggaag gtttttgtcc
      181 gccgatgctg ccgtccgggg cgaagacccg gcatggccag cgtgcgggag cgaggtgatg
      241 gcgcgggcca tggaggaaga gcgcgcccgc gcccgcgtcc gcgagcgcct gtttggatca
      301 ttccgcctgg gtcatgccgg atggatgctg atgctggttc ttgccgagaa ccagacctac
      361 acaaacgaac tgaccgtcaa gagtgcggcc tatgccgccg gaattccgct gtcttcggcg
      421 ctgcgcaaga tagttgagct gtgcgagaat gggcttttgc tacgcaggaa tgacccgtcg
      481 gacaatcgcc gatcgttcgt ggcgctgacc gagcgtgcca ggactttgct ttccgaatat
      541 ctggcggcgg gccggagcga cgtcaaggcg tgagcgcgct gtggagcgcc accccgccat
      601 gaaatccccg cgctaaagct gcttttccat ccggtaattg cccaggctct ggccgttggt
      661 ctcgaccgtc tgataggcca gcaccttgaa gccgtggcgc tcgaacaccg ggcgggcggt
      721 gatgctgact tcgctgaaca ggcgtttgag gcgttcattc ccgccccgcg ccgccagaaa
      781 ccgcagcatg gcgctgccga caccgcggcg ctggaaatcg ggattgacga agaacatgtc
      841 gatatggccg tcaccgtcca gatcggtgaa gcccgccacc tgtccgtcat attcggccac
      901 gaagctgggc ttggcggtgc ggcgggcgcc ccatgccacc atgtcgcgga cgtccggcgc
      961 ccaagccgca acctgtgccg gggaataatc cttgcgggca atctcgcgca ccgcgcgctg
     1021 gaagatctcg gccagcgctg cgcagtcgga gttgcgatag tcacggattt cgatcattgg
     1081 cccttcttgg cggcagacgc gaaccgcaca gcttcctcgg cggcggcaag cagcgccttg
     1141 gatttgttga tggtttcttg atactcggcc tcaggctggc tgtcggcgac cacgccgccg
     1201 cccgcctgca catacatggt accatccttt accagtgcgg tgcgcagcac gatacaggtg
     1261 tccatcgagc cgtcggcggc gaaatagccc accgcgcccg cataagccgc gccgcgcttt
     1321 tctttttcaa actcgtcgat gatttccatg gcgcggatct tgggcgcgcc cgtcagggtg
     1381 ccggcgggca ggcccgccgc caaggcatcc accgcgtcca gcccgtcgcg gatatcgcct
     1441 tcgacattgg acaccagatg catcacatga ctgtagcgtt cgatgaagaa actgtcggtc
     1501 accgtcaccg caccggtctt ggccacccgg ccgacatcgt tgcggcccag atccaccagc
     1561 atcagatgct cggcgcgttc cttcgggtcc gccatcaggt tttcggccag cgccttgtct
     1621 tcttccggcg tcttgccgcg cggccgcgtg ccggcgatgg gacggatggt gaccttgccg
     1681 ccccgcaacc gcaccagcac ttcggggctt gagccaacga tctggaaacc cggcatcgcc
     1741 aggtaataga gataaggcga ggggttcagc cgccgcaggg cgcgatacag cgagaagggc
     1801 ggcaaagcga agggacggcg gaagcgctgg ctgggcacca cctggaacac gtcgccggcc
     1861 aggatgtaat ccttggcccg cgccaccacg tcgaaatact cgtccttggt catgttggat
     1921 tcaatggcca cgccggtggg caggtcggtg ggggtgggcg cgggatgcgg cgcgggcgct
     1981 tccagcgccg ccaccgcttc gtccagccgc gccaggccac gggcataagc ggctttggcg
     2041 tccacattct tatccggcca caccggcgtg atgacgatga tctcgtcctt cacgctgtcg
     2101 aagatggcgg tgatggtggg gcgcagcaga atggcgtcgg gcaggcccaa agtgtcaggc
     2161 ggaggatggg gcaggttctc cacctgccgc gccatgtcat agcccagata accgaacagg
     2221 ccggtggcca tgggcggcag ggtggcgggc agggtcagct gcgtttcgcg ggtcagggcg
     2281 cgcagggacg ccaacggctt ggcggcctcc ggcacgaatt tgttttcgtc ctgcagcgcg
     2341 gcgcggttga tctcggcctg gccgtcccgg cagcgccaga tcagatccgg cttcagtccg
     2401 atgatggaat agcgcccgcg cgtttccccg ccctgtacgc tttccagcag gaacgcattg
     2461 tccctgcctt cgcccagctt gaggaaagcg gagaccggcg tctccaggtc ggccaccagc
     2521 cgggtataga gaagttgggc gcggccttca ccatagcctg gggcgaaggc gtcgaaggcg
     2581 ggttggatca tgcgatggtc actggttcgc gccggtgagg gaggcgacca gcttctgatt
     2641 gaccttcacg ccctggcggg agcgggcggc attggccaga gagatggaga aatcgcccgc
     2701 cactgtttgc gagaagcgcg ccgcgccggc ctggaaactg ggatcgcggg gatccagctt
     2761 gggatggctg atgccggtga cccgcgcgat gacgtaattg cccgacaagc cttgcggccc
     2821 gaaatccacg ccgcccgccg gggtgttgaa cagcttggtc accatcgcgg tattgaacat
     2881 ggtgtcgttg gtttcgcggc ccagtgccgg gctgtgctgg atcgccactt tcaagtcccg
     2941 ggcgatgttg tccagcgact tgtccttggc ggcctggatc gccagcgcct gggccttggc
     3001 gcccagcatc tggctgcgtt gctcggtatt ccagtcggcc agcgcctggg cgcgcacctg
     3061 atccaacggc ttcagcttgg gcggtgtcac cccgttcaca tgaatggcgt aataggcgcc
     3121 cagcttggtg ggaaagggat cggtgtcttc gcccacttcg cccttgaaca aagcgggcag
     3181 gaattccgga tcggccggga catcggcttt gctgccatcg gacttgaggc cggtgacatc
     3241 cacgccgccc agacgcgcca cccgcatgcc ggctttcttg gctgcttcct tgagttcggc
     3301 gccgccggag cgggcatcgg tataggcatt gaccgcatcg accagtttgt tggcggccag
     3361 ctgattggtg aggctcttgc ggatgtcttc cttcgcatcc gccaaactct tggtcgaacc
     3421 gggcgcgatc ttggtcaccc gcgccagcac gaaaccgcca aagccggtct tgatcggttg
     3481 gctgacctcg ttcagggcca aggcgaagat cgccttggcg cgatccgcat cgggcaagtc
     3541 gctttgcgcc aaggtgccca gcgacatctg cgccggcttc aagccgcggc tggccgccag
     3601 gtcttcataa cttgtgccgg atccgatctt ggcgcgcgcc gccgccgctt cggccagagt
     3661 cttgaactcg atctgctgca cgtcgcgctt ttcggcgatg acatagatgg ctttgtgggc
     3721 gtcgtaatcc tgctggatct gcgcgtcgct gacggtgatg gcgccgatca cgtcggcggg
     3781 ggcgatggcg gcataatcgg catcgcgata ttccgcggtg gagaaacgct cggcatgcag
     3841 cttgacgtaa gccgacagca ccgcattgct gggcgccggc acgtcgcccg cctgctccgg
     3901 cgacaggatg acataatcgg cggcgcgctt ttcgtttatg tactggaaga tcgcctgggc
     3961 ataggtgggc ggcaccagga agttgccttc caccgcctgg gtcagctggt cgcgcgtcat
     4021 gtcctggcgc acttcgtcca ggaactgttg ttcgctataa ccggctgcct gtaccgcctg
     4081 gatgaaggtg gggcggtcga actggcccag ggtgccgcgg aacggggcca tggcgcgcac
     4141 attctgcacc accgtcgcat cggaggcggt caggcccaga tgctccgcct cattgttcag
     4201 ggcggtgcgg ctgaccatct gctgcaaggc gacctggccc aggcccatct tctgcgccat
     4261 ctccggcgtg atctcggcgc ccatctgctg gccctggttg cgcaggaaat tcttgtaggt
     4321 gcgctggaat tcctgggcgc cgatgtcggt ggaccccacc gtcgccacgc ccgcggtgga
     4381 gacgcccgtg aacacgtcgg caatgcccca cgccacaaag ctcagggtca agccgcccat
     4441 caacagggtg gccatccagg acttggaaag agtgtgcatc cattgaatca tgaccggaaa
     4501 tccgtggctt agagcgtggc gtcgaaaggc ggcggatgat agggaggggg cgttcccgca
     4561 gcaagccgcg cactggtgcg ggttttgccg ctgaaatcgg ggaattacaa ggggttatcc
     4621 atgcgtccgc tggtggcggg aaactggaag atgaatgggc tggcgtccag cctgggcgaa
     4681 ctggtggcgc tgaaagacgc gctcgccaag cagccgcccg cctgcgacgt gctgatctgt
     4741 ccgcccgcca ccctcatggc ccaggcggcg tgggcggtga aggacgcctt tgcgctgggc
     4801 gggcaggatt gccatgcgca agaccaaggc gccttcaccg gcgatatctc cgctgagatg
     4861 ctgaaggatg ccggcgcgtc ttatgtgatc gtgggccatt ccgaacgccg ccactattac
     4921 ggcgagacgg acagcgatat cgccgccaag gcgcgggccg cctggcgcgc gggattgaag
     4981 gccatcatct gcatcggcga gaccgagagc caacgcgatg ccggcgacgc gcacgccatc
     5041 tgccagagcc agctggaggc cagcgtgccg gacggcgcaa caccggccaa taccgttctg
     5101 gcctatgagc cggtctgggc catcggcacc ggccggacac cgacgtcggg cgagatcacg
     5161 gcgatgcacg ctcatatccg cagctgtctt ttgcgccggc tgggcccaag tgcgaaagaa
     5221 ggtgcggcgc agattctgat cctctatggc ggctcggtga aaccggacaa tgcgaatgaa
     5281 atccttaatc tgccggaagt gagtggcgcc ttggtgggcg gggcaagcct caaagcgtct
     5341 gattttctca gcattatcgg cgcaataaag gcttcttaac cagttcgctc gaccctttgt
     5401 taacgcgctg cgccgcattc tcatcgcaat aaagaataat gcgtgcggtg ggtaatgagc
     5461 ctgtctttcg acagtgtgga cgtgttgatt tacgatccgg tgccgtcaaa ccgcaccgcg
     5521 acgcgtgcga ccatgtatgc gctcggcttc cgccgcaccg aaacggtttc cagcctcgaa
     5581 acctttgtcg aagcgatgca gaagcggccg ccggatatcg cgttgtgcga ggcgcagggt
     5641 gcggccgacg aattgtgcgc caccatccag cagatgcgcc agggcggggc ggggcacaat
     5701 cctttcatcg tcatcatcgt caccgcctgg gagaagaaca ccgccctgat caacaaggtg
     5761 gtgtccagcg gcgccgacga tttgctgctg cggccctttt ccaccgcgct gctgggccag
     5821 cggatcgaag cccatatcga gcgccgcaag ggctttgtca tcaccactga ctatgtcggt
     5881 cccgaccgcc gcaaggatac cggccgcgct tccaatgtcg aactgtttga accgcccaat
     5941 tcgctgaaga tgaaagccaa ggaccggatg tccggcgagg ctatcgcccg caagctggat
     6001 accgagctga aggcggcgcg cgaaaagctg acgtccgaaa agctgcgccg cgacgccttc
     6061 cagatatgta ttctgtggcg gctgatccag gatgcacagt tgctggtggg aaagattccg
     6121 cccgagctgg tcaagctgca gatactgacc aagtccgtgg aagcgcgcag caccgacaat
     6181 gaattcgccc cggcgctgga atggtgccag gcggtgatgg cggcggcgga agggctggcg
     6241 ctgggggtgg accgcaacgc ctccatgcac cttctggggc atgcggcgct gagcatgcac
     6301 catattttcc atcccgagaa atccgcggcc gagcaactgt cggagatcga cgccacggta
     6361 gcgctgatcc gggctcgcaa tctggccgaa gcgctggcgt cttaaacctc gcccagagtg
     6421 tcatggcccg cgaatgcggg ccatccagtt gacacttgca gcggcgatgc aggggttcac
     6481 ctgggtccgc cgcatttgcg gcggatgaca ttacggtgca accttctgat tcaacacact
     6541 agacaagtga cagatcggcc ggttgcgcgg acggaaaaat ctgcgccagt tgcgcttgcg
     6601 acaggccata gctcttgcgc aataccccgc cgatcaaggc gcgatagtcg gtcagaaccg
     6661 gccagtcgcg atcctggaac aggttggcct gggtcaccgc cacttgcggg cccgcgatgc
     6721 gcccgccttt gacgccgccg cccagtaccc aatagacgct gccatggccg tgatcggtgc
     6781 cgcggtcgcc attctcgcgg aaggtgcggc cgaattcgct gaccacgatc accaccgtat
     6841 cgttccaggc agggcccagc gcggtctgca gcgctgccag tccgcgcccc aattcgccga
     6901 tgcggcctgc gagatagccg tcggcgccgc cctggttgac gtgggtgtcc cagccgccga
     6961 tatcgacaaa gcccagattg aacttggcct gcatcaaaag gccgatgcgc tgggccgaga
     7021 gttcaaaacc cttggtggtg acggcgcccc ggttggcggc cgccatctcg ccggagatgg
     7081 cggaatagac ctcgttctgc acctgaaaac cttccgccac ggcgggcgcc aggtcctggc
     7141 cctgatacat ggcctgaatc agcgccgcgt tgcggtcgtt gacactcggt ttgccggtga
     7201 agttcagcgc gatattggga atggcgccgc cgccacggaa gcttagaggc aattgggcgg
     7261 tgaaggcgat gggctgcgtg cccgacagca gctgcgccgt gcggctgagg aagccggact
     7321 ggtagttgcg ggtccctccg atgggctggc ccagttcgat cgtgtcctgg gtttcgaaat
     7381 gcgagcgcga cgtgtcgtcg gtgccggcga agggaatgaa ggcaatctgc ttttgctgcc
     7441 acagcggata gatcgaatcc ttcagtgccg gatgcaggcc ccagtcgctg tccagcggca
     7501 gcgccgcacc cttgggaatc gcgagggtag ggcgcgcggc gtaatagaaa tcgctggaga
     7561 ccggcaccag gatattggcg gcgtcatagg cgccgcgcag gaacaccacc agcaggcgcg
     7621 gccccgcggc cggcgcggca tagagacggc ctgccgtaaa gagcggcgcg gcataaagcg
     7681 cggatttca
//
LOCUS       DATMDK010000301         3626 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_3115660,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000301 DATMDK010000000
VERSION     DATMDK010000301.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3626)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3626)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3626
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3115660"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..919)
                     /locus_tag="VNN98_05850"
     CDS             complement(<1..919)
                     /locus_tag="VNN98_05850"
                     /inference="COORDINATES: protein motif:HMM:NF019850.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016881 - acid-amino acid ligase activity
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Mur ligase family protein"
                     /protein_id="HWM61655.1"
                     /translation="MIPSRAFANRTVAIFGLARTGLGAVRALVAGGTKVIAWDDSSTA
                     RDLGGQEGAELMPWREWPWENIAALILSPGVPLTHPAPHGVVEHANRAKAQIIGDVEL
                     FAREIRGNPDQAGKAPVIAITGTNGKSTTTALVGHILNSCGFDAQIGGNIGKSVLELA
                     PPFSNKNGAKTIYVLEMSSFQIDLAPGLTPDVGILSNLSPDHIDRHGTMENYAAIKAR
                     LMKQTAKDGQVVIGVDDAMSSAIFTQLSADGGAQAYPASVGKVLGRGIFVVDGALYDA
                     MGARAAKVMDMTAAAHLPGAHNWQNAALAY"
     gene            complement(925..2016)
                     /gene="mraY"
                     /locus_tag="VNN98_05855"
     CDS             complement(925..2016)
                     /gene="mraY"
                     /locus_tag="VNN98_05855"
                     /EC_number="2.7.8.13"
                     /inference="COORDINATES: protein motif:HMM:TIGR00445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008963 -
                     phospho-N-acetylmuramoyl-pentapeptide-transferase activity
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phospho-N-acetylmuramoyl-pentapeptide-
                     transferase"
                     /protein_id="HWM61656.1"
                     /translation="MLYYLSLLTHTDQLAFFRLFKYLTFRSGAAVVTALLIAFLINPT
                     LIRWLKVKQGKGQPIRSDGPQRHILEKAGTPTMGGLLILIPWIGSTLLWASPSNRYVW
                     IALLVTAAFGLLGFLDDYYKVTKRTSDGLSSRSRLLIEFTVAGLATWLIMQSQGPALS
                     GVLAVPFIKTALLPLGLFFLAIGIFVIAGAANAVNFTDGLDGLAIVPVMIAAATFTLI
                     VYLVGNERFAAYLQVPYIEYSGELAVFLAALVGAGLGFLWYNAPPAAIFMGDTGSLPL
                     GGALGVVAVAVKHEIVLGIVGGLFVVETVSVVVQVISFKLTGKRVFKMAPIHHHYEQL
                     GWTEPTIVIRFWIVAVVLALLGLATLKLR"
     gene            complement(2016..3371)
                     /gene="murF"
                     /locus_tag="VNN98_05860"
     CDS             complement(2016..3371)
                     /gene="murF"
                     /locus_tag="VNN98_05860"
                     /inference="COORDINATES: protein motif:HMM:TIGR01143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047480 -
                     UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
                     activity [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-
                     alanine ligase"
                     /protein_id="HWM61657.1"
                     /translation="MNLWTHLEAEAATLGAASRAFTVSGLSIDTRTLKEGDLFVALKG
                     DNRDGHDFVRAAFDAKAGAALVTHAPDGVTGPLLTVAHTQRGLEDLARAARARSNAKI
                     LAVTGSAGKTTTKEILRLACNALGRTYASAASHNNHWGVPLSLASLPRDAEYAIFEVG
                     MNHFGEIRNLVSFVRPHLALITTIAPAHLEFFGTCEAIADAKSEIFEGLLPGGGALIP
                     SDSPYAERLKARAKQAQVSRIVAFGVGGDAKLISHTPDGEGMRVKADILGCAVDCHVG
                     APGAHIAQNVVGALAAVALLEGDVLNAAAALKNFAALKGRGARFDAGGMHVIDESYNA
                     NPASMAAALALLGLANGRKIAVLGDMLEMGERAAAHHAGLAAPIEANKVDLVFASGPQ
                     MKMLWDALPSSRRGAYAETSALLLPKVLATLQAGDTVLVKGSNGARMSVIIEALKEKA
                     A"
     gene            complement(3368..>3626)
                     /locus_tag="VNN98_05865"
     CDS             complement(3368..>3626)
                     /locus_tag="VNN98_05865"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61658.1"
                     /translation="TDDNPRSEDAAAIRGEILAAAPGAREIGDRAEAIRAAVAALSTG
                     DVLILAGKGHETGQYINGEVLPFSDREQAIAAALLLGGRAA"
BASE COUNT          685 a         1175 c         1152 g          614 t
ORIGIN      
        1 cataggccag cgccgcgttc tgccaattat gtgcgccggg aagatgggcg gcggcggtca
       61 tatccatcac tttggcggcg cgggcgccca tggcgtcata cagcgcgccg tccaccacaa
      121 agataccgcg gcccagcacc ttgcccaccg aagcgggata ggcctgggcg ccgccgtcgg
      181 ccgacagctg ggtgaagatg gcggaggaca tcgcatcatc caccccgatc accacctggc
      241 cgtctttcgc cgtctgcttc atcagccggg ccttgatggc ggcgtaattc tccatcgtgc
      301 catggcggtc gatgtgatcg ggcgacaggt tggacaggat gccgacatcg ggcgtcagcc
      361 ccggcgccag gtcgatctgg aagctggaca tttccagcac gtaaattgtt ttggcgccat
      421 ttttattgga gaagggcggc gccagttcca gcactgactt gccgatattg ccgccgatct
      481 gggcgtcgaa gccgcaactg ttcaagatat gccccaccag cgcggtggtg gtggatttgc
      541 cgttggtgcc ggtgatggcg atcaccggcg ccttgccggc ctgatcggga ttgccgcgga
      601 tttcacgggc aaagagctcg acatccccga tgatctgggc cttggcgcgg ttggcatgtt
      661 ccaccacgcc atggggtgcg ggatgggtca gcggcacgcc cggcgacagg atcagggcgg
      721 cgatattttc ccacggccat tcgcgccagg gcatcagttc ggcgccttcc tggccgccca
      781 ggtcgcgcgc cgtgctggaa tcgtcccagg cgatcacttt ggtaccgccc gccaccagcg
      841 cgcgcaccgc gcccagccca gtgcgggcca ggccgaaaat ggcaacggtg cgattggcaa
      901 aagcgcggct ggggatcatc gcctctaccg cagcttcaag gtggcgaggc caagcagcgc
      961 cagcaccacc gccacgatcc agaagcggat cacgatggtg ggctcggtcc agcccaactg
     1021 ttcataatgg tgatggatcg gcgccatctt gaagacgcgc ttgccggtga gcttgaagga
     1081 gatcacctga accaccaccg acacggtttc gaccacgaac aagccgccga caatgcccag
     1141 cacgatctcg tgcttcaccg ccaccgctac cacaccgagc gcgccaccca ggggcagaga
     1201 gccggtatcg cccatgaaga tggcggcagg cggggcgttg taccaaagaa agcccagccc
     1261 cgcgcccacc agcgccgcca ggaacacggc cagctcgccg gaatattcga tgtagggcac
     1321 ttgcagatag gcggcgaatc tctcattgcc caccagatag acgatcaggg tgaaagtggc
     1381 ggcggcgatc atcaccggta cgatggccaa gccatccagc ccgtcggtga agttcaccgc
     1441 attggccgcg cccgcgatga caaaaatgcc gatagcgaga aagaacaagc ccagcggcag
     1501 caacgccgtc ttgatgaagg gaaccgccag cacgcccgac aaggccggac cctgcgactg
     1561 catgatcagc caggtggcca ggcccgcaac cgtgaactcg atcagcagcc gcgagcggct
     1621 ggagaggccg tcagaagtgc gcttggtcac cttgtaatag tcgtccagaa aacccagcag
     1681 gccaaaagcc gccgtcacca gcagcgcgat ccagacataa cggttggacg gactggccca
     1741 caacagggtg gaaccgatcc aggggatgag gatcagcaat ccgcccatgg tcggggtgcc
     1801 ggccttttcc aatatatggc gctgcggccc gtccgaccgg atcggctggc ccttgccctg
     1861 cttcactttc aaccagcgga tcagcgtggg attgatcagg aaggcgatca gcaacgccgt
     1921 caccaccgcc gcgccggagc ggaaggtgag atatttgaac aggcggaaga aggccagctg
     1981 gtcggtgtgg gtgagaagcg acagataata cagcatcagg ccgctttctc tttgagggct
     2041 tctatgatca cggacatcct ggcgccgttg gagcccttca ccagcacggt atcgccggcc
     2101 tgcagtgttg ccagcacttt gggcagcaac agcgcagatg tttcggcata ggcgccccgg
     2161 cggctggatg gcagcgcgtc ccataacatc ttcatctgcg ggccgctggc gaaaaccagg
     2221 tccaccttgt tcgcctcaat cggggccgcc agcccggcat gatgggcggc agcgcgctcg
     2281 cccatttcca gcatgtcgcc cagcactgcg atcttgcgac catttgcaag gcccaaaagc
     2341 gccagtgccg ccgccatgga ggccggattg gcgttgtagc tttcgtcgat gacatgcatg
     2401 ccgccggcgt cgaagcgcgc gccgcggccc ttgagtgcgg cgaaattctt cagcgctgcg
     2461 gcggcgttca gcacatcacc ttccaaaagc gccaccgccg ccagcgcgcc caccacattc
     2521 tgggcgatat gggcgcccgg cgcgccgaca tgacagtcca cggcacagcc tagtatgtcg
     2581 gccttgaccc gcatgccttc gccgtccggg gtgtgcgaga tcagtttggc gtcgccgccc
     2641 acgccgaagg cgacgatgcg cgacacctgc gcctgtttgg cgcgggcctt caagcgttcg
     2701 gcatagggac tgtccgacgg gatcaaagcc ccgccaccgg gcagcaggcc ttcaaagatt
     2761 tccgatttgg cgtcagcaat ggcctcgcaa gtcccgaaga attccagatg cgccggggcg
     2821 atggtggtga tcagcgccag atgcggccgc acgaaggaga ccaggttcct gatctcgccg
     2881 aaatggttca tcccgacttc aaagatggca tattcggcat cgcgcggcag cgacgccagg
     2941 ctcagcggta cgccccagtg attgttgtgg gaggcggcgg aggcataggt gcggcccagc
     3001 gcattgcaag ccaggcgcaa tatttccttg gtagtggttt ttccggcgct gccggtgacg
     3061 gccagaattt tcgcgttgct gcgggcccgc gcggcgcggg ccaggtcttc caagccgcgc
     3121 tgagtgtggg ccacggtcaa taacgggccc gtcacgccat cgggcgcatg ggtgaccagc
     3181 gccgcaccgg ccttggcgtc aaaagcggcg cgcacgaaat cgtgaccgtc gcgattatcg
     3241 cccttcaggg ccacgaacag gtcgccttcc ttcagcgtcc ttgtgtcgat cgaaagcccg
     3301 cttaccgtga aggcgcggct ggccgcgccc aaagtcgcgg cttcggcttc caggtgcgtc
     3361 cacaaattca tgccgcgcgc cctcccagga ggagtgcggc ggcaatcgcc tgctcgcggt
     3421 ccgaaaaggg caggacttcg ccgttgatat actggccggt ctcatggccc ttgcctgcga
     3481 gtatcagcac gtcacccgtg ctcagcgccg ccaccgcggc gcgaatggct tcagcgcggt
     3541 cgccgatctc gcgcgcgccc ggcgcggcgg ccagaatctc gccgcggatc gctgccgcat
     3601 cttcgctgcg gggattgtca tcagta
//
LOCUS       DATMDK010000302         2282 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_3116191,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000302 DATMDK010000000
VERSION     DATMDK010000302.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2282)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2282)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2282
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3116191"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(136..933)
                     /gene="trpC"
                     /locus_tag="VNN98_05870"
     CDS             complement(136..933)
                     /gene="trpC"
                     /locus_tag="VNN98_05870"
                     /EC_number="4.1.1.48"
                     /inference="COORDINATES: protein motif:HMM:NF001370.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004425 - indole-3-glycerol-phosphate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0006568 - tryptophan metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="indole-3-glycerol phosphate synthase TrpC"
                     /protein_id="HWM61659.1"
                     /translation="MSILDKILGYKKEEVVAAKAKANTAELEARAKDVEAPRGFLAAL
                     DDKKDSGEYGLVAEIKKASPSKGLIRADFDPPALAIGYEEGGAACLSVLTDAPSFQGA
                     PEFLTQAREATRLPVLRKDFMLEPYQVIEARSWGADCILIIMAMLNDDQARALLDETA
                     RWEMDALVEVHDEAELERALDLDANLIGINNRNLKTFVTDMGVTLKLAPKVPRGVHVV
                     AESGISAPADLKRLAGAKVTSVLVGESLMRQKDVRAATALLLGNGFR"
     gene            complement(930..1997)
                     /gene="trpD"
                     /locus_tag="VNN98_05875"
     CDS             complement(930..1997)
                     /gene="trpD"
                     /locus_tag="VNN98_05875"
                     /EC_number="2.4.2.18"
                     /inference="COORDINATES: protein motif:HMM:TIGR01245.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004048 - anthranilate
                     phosphoribosyltransferase activity [Evidence IEA];
                     GO_process: GO:0000162 - tryptophan biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate phosphoribosyltransferase"
                     /protein_id="HWM61660.1"
                     /translation="MKVTSASVDFPAALGIVREGGSLDAEASARVFETIMSGTVGDAD
                     LIAFLTAQAERGPTVPEIVGAVRTMRAGMRPVTAPEGAIDLCGTGGDGHGTLNISTAA
                     SFVVAGAGVPVAKHGNRSATSKSGAADILEALGVKIDLEPARASQVLAQTGIAFLFAQ
                     LHHPAMHHVAGVRSQIKRRTIFNLLGPLASPARVKHQLVGVYAPEWLTPYAEALAALG
                     SSRALVVHGADGLDELTTTAVTYYARLEDGQISRGEITPEQAGLKRASLSDLKGGSAA
                     DNAAALRRLFDGEGGAYRDIVLLNAGAALMVAGVAKDVKEGVELAARALDSGAAKVKL
                     ETLINASNQAASSSDAAGHVT"
     gene            complement(1994..>2282)
                     /locus_tag="VNN98_05880"
     CDS             complement(1994..>2282)
                     /locus_tag="VNN98_05880"
                     /inference="COORDINATES: protein motif:HMM:NF012345.4"
                     /note="Members of this family of hydrolases with an active
                     site Cys residue belong to MEROPS family C26; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="gamma-glutamyl-gamma-aminobutyrate hydrolase
                     family protein"
                     /protein_id="HWM61661.1"
                     /translation="LSRVHHSGKSVFRGLNNDFLATRYHSLTIDPPSMPASLEVTATS
                     DDGVIQGVMHKTHPVHGVQFHPESIASENGHALLGNFLSIARDFAKAKVPA"
BASE COUNT          342 a          748 c          763 g          429 t
ORIGIN      
        1 gcggcttggg cggcgtggcg ctgatggcgc gatgttccgg cgcggcatgg cgcgggctgc
       61 cgcgcatgcc tgccgagcgg cgaagctttt gttggtcgct ccggctttcg ccgacgctcc
      121 gcggcggttc tttactcacc gaaagccgtt gcccaacagc agggcggtgg cggcgcgcac
      181 atccttctgg cgcatcaggc tttcgcccac cagcacactg gtgactttcg ccccggccag
      241 ccgcttcaag tcggcggggg cggagatgcc gctttccgcc accacatgca cgccgcgcgg
      301 caccttgggc gccagcttca gggtcacgcc catgtcggtg acgaaggtct tgagattgcg
      361 gttgttgatg ccgatcaggt tggcgtcgag atccagcgcc cgttccagtt cggcctcgtc
      421 atgcacctcc accagcgcgt ccatctccca gcgcgcggtt tcgtccagca gggcgcgggc
      481 ctggtcgtcg ttcagcatgg ccatgatgat caggatgcag tcggcgcccc agctgcgcgc
      541 ctcgatcacc tgatagggtt cgagcatgaa gtccttgcgc aagacgggca ggcgggtggc
      601 ttcgcgcgcc tgggtgagga attctggggc gccctggaag gacggcgcgt cggtcaggac
      661 cgacagacag gcggcaccgc cctcttcata gccaatcgcc aaggcggggg gatcgaaatc
      721 ggcccggatc aggcccttgg aggggctggc cttcttgatc tccgcgacca ggccgtattc
      781 gccggaatcc tttttgtcgt ccagcgccgc caggaagccg cgcggcgctt ccacatcctt
      841 ggcgcgggcc tccagttcgg ccgtgttcgc cttggccttg gcggcgacga cttcttcttt
      901 cttgtagccg aggattttgt cgagaatgct catgtcacat ggcccgccgc gtcgctgctt
      961 gaggccgcct ggttcgaggc attgatcagg gtttccagtt tcacctttgc cgcgccgctg
     1021 tccagcgccc gcgccgccaa ctctacacct tcttttacat cttttgcgac gcccgccacc
     1081 ataagggctg cgcccgcatt cagcagcacg atgtcgcggt aagccccgcc ttcaccatcg
     1141 aacagccgcc gcagcgctgc cgcattgtcg gccgcgctgc cgcccttgag gtcggacagg
     1201 ctggcgcgtt tgagacccgc ctgttcgggg gtgatctcgc cccggctgat ctggccatct
     1261 tccaggcggg catagtatgt gacagcggta gtggtgagtt cgtccagccc gtcggcgcca
     1321 tgcaccacca gggcgcggct gctgcccagg gccgcaagcg cctcggcata aggcgtcagc
     1381 cattcggggg catagacgcc gaccagctgg tgtttcaccc gggccggcga ggccagggga
     1441 cccagaagat tgaagatggt gcgccgcttg atctggctgc ggaccccggc gacatggtgc
     1501 atcgccggat gatgcagttg ggcgaagagg aaggcgatgc cggtctgggc cagcacctga
     1561 gacgcccgcg ccggttccag gtctatcttc acccccagcg cttccaggat gtcggccgcg
     1621 ccgcttttgg aggtggccga gcggttgcca tgcttggcca ccggcacgcc ggcgcccgcc
     1681 accacaaagg acgctgccgt cgatatatta agcgtgccat ggccgtcgcc gccggtgccg
     1741 cataggtcga tggcgccctc cggcgccgtc actgggcgca tgccggcgcg catggtccgc
     1801 accgcgccca cgatctccgg cacggtagga ccgcgttccg cctgggcggt gaggaaggcg
     1861 atcagatcgg catcgcccac cgtcccgctc atgatggttt cgaacacgcg cgcgctggcc
     1921 tcggcgtcca ggctgccgcc ttcgcgcacg atgcccagcg ccgcgggaaa gtccaccgag
     1981 gcactggtca ctttcatgcc gggactttgg ccttggcgaa atcgcgggcg atggaaagga
     2041 aattgcccag caaggcgtgg ccgttttcgc tggcgatgct ttcgggatgg aactgcacgc
     2101 catgcaccgg atgggtcttg tgcatcacgc cctggatcac gccgtcatcg ctggtggcgg
     2161 taacttccag ggatgcaggc atcgacggcg gatcgatggt gagggagtga tagcgggtgg
     2221 cgagaaaatc attgttcaag ccgcggaaca cgcttttgcc gctgtgatgg acgcgggaga
     2281 gc
//
LOCUS       DATMDK010000303         2161 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1525150,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000303 DATMDK010000000
VERSION     DATMDK010000303.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2161)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2161)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2161
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1525150"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..416)
                     /locus_tag="VNN98_05885"
     CDS             complement(<1..416)
                     /locus_tag="VNN98_05885"
                     /inference="COORDINATES: protein motif:HMM:NF024575.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61662.1"
                     /translation="MAQSTQTAQPYRVLARKYRPSDFTGLIGQEALVRTLSNAFATGR
                     IAHAFMLTGVRGVGKTTTARIIARALNCVGPDGKRTDPTIQPCGVCEPCISISESRNV
                     DVQEMDAASRTGIDDIREIIEGVRYAPASARYKVYI"
     gene            complement(477..571)
                     /gene="ffs"
                     /locus_tag="VNN98_05890"
     ncRNA           complement(477..571)
                     /ncRNA_class="SRP_RNA"
                     /gene="ffs"
                     /locus_tag="VNN98_05890"
                     /product="signal recognition particle sRNA small type"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00169"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00169"
     gene            complement(615..>2161)
                     /locus_tag="VNN98_05895"
     CDS             complement(615..>2161)
                     /locus_tag="VNN98_05895"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="MHYT domain-containing protein"
                     /protein_id="HWM61663.1"
                     /translation="IFLQHDLRLVVVAAGLCLLACATALTMIARARAAEPGRGRLTWL
                     AGAGAVAGCGIWGTHFVAMLAYSTGLPIGFATGLTVTSALIAMTLCGVGFALAVRISG
                     ALGGVVTGLAICAMHYTGMAAVELPARAVWDLSYVTASVLIGISVSGLALHLALRRKS
                     RRDFGLGAGLFTLAIVGLHFTAMTAVRYVPDGSHPASTHVIYPFALAVVVAACAAFIV
                     SQGLVVALVDRHLAMRAQGEALRLRNHIVELEATQQALEKTSADLTTALDAAEAASKT
                     KSAFLASMSHELRTPLNAILGFSETVQLETFGPLGSERYKEYIGHIHHSGAHLLSLIN
                     DVLDLSRLDAGHTDLHEEIFDPSELITGSLRMVMGQAQQARIALSTDIGRSLPWLRAD
                     QRRIKQILINLLSNALKFTPAGGRVQVSARLTEAGLALAVADSGIGIAQEDIPKALER
                     FGQVDSRLERKYEGTGLGLPLCKQLAELHGGELVLESTVGTGTTVTVTLPRERLVARQ
                     AATAAA"
BASE COUNT          403 a          696 c          718 g          344 t
ORIGIN      
        1 atgatgtaga ccttgtagcg cgccgatgcg ggcgcatagc gcacgccctc gatgatctcg
       61 cggatgtcgt cgatgccggt gcggctggca gcgtccatct cctgcacgtc gacattgcgg
      121 gattccgaaa tcgaaatgca gggctcgcac acaccgcaag gctggatggt gggatcggtc
      181 cgttttccgt cggggccaac gcaattgagc gcccgggcaa taatgcgcgc cgtggtggtc
      241 ttgcccaccc cgcgcacgcc cgtcagcata aaggcatggg cgatgcgccc cgtggcaaag
      301 gcattggaca gggtgcgcac cagcgcctcc tgcccgatca ggccggtgaa atcgctgggg
      361 cggtatttgc gcgccaagac gcggtagggc tgggctgtct gggtagattg ggccatgggc
      421 ggactatagc aagcgggccc gcaatggcgc gggcgattta gagaatttat gtggaaaggt
      481 ggaagccgac acgacccgga ccgaattcgt tacggctgct tccgtcagga cctgaccggg
      541 ttggcgacag gtccgtccgc gtcgacttcc ggggctcgat atagagattc agcccggaaa
      601 ttgcgagtcc ggccctaggc tgcggcggtg gcggcttgcc gcgccaccaa ccgttcccgc
      661 ggcagggtca cggtcacggt tgtgccggtc ccgacggtgc tttccagcac cagttcgccg
      721 ccatgcagtt ccgccagctg cttgcacaag ggcagaccca gcccggtgcc ttcatatttc
      781 cgctccaggc gggaatccac ctggccgaag cgttccagtg ccttggggat gtcttcctgg
      841 gcgataccga tgccgctgtc ggccaccgcc agcgccaacc cggcctcggt cagccgggcc
      901 gagacctgca cccgcccgcc ggccggggtg aacttcaggg cattggatag aaggttgatc
      961 agaatctgct tgatgcggcg ctggtcggcc ctcagccagg gcaggctgcg gccgatatcg
     1021 gtggacagtg ctatcctggc ctgctgcgcc tggcccatga ccatgcgcag cgatccggtg
     1081 atcaactcgg acggatcgaa aatttcctcg tgcaaatcgg tgtggccggc atccagccgc
     1141 gacaggtcca gcacgtcatt gatcagcgac agcagatgcg ccccactgtg atggatgtgg
     1201 ccaatatatt ccttgtagcg ctccgaaccc aacgggccga aggtctccag ctgcacggtt
     1261 tcggaaaagc ccagtatggc gttgagcggc gtgcgcagct catggctcat ggaggcgagg
     1321 aaggcggact tggttttgct ggcggcttcc gctgcgtcca gcgccgtagt cagatcggcc
     1381 gacgtctttt ccagcgcctg ttgggtggct tccagttcga caatgtgatt gcgcaggcgc
     1441 agcgcctcgc cttgcgcccg catcgccaga tggcgatcca ccagcgccac caccaggccc
     1501 tgggacacga tgaaggcggc acaggccgcc accaccacgg ccagcgcgaa aggatagatc
     1561 acatgcgtgg acgcgggatg cgagccgtcg ggcacatagc gcaccgcggt catagcggtg
     1621 aaatgcaagc ccacaatggc cagggtgaac aggcccgcgc ccagcccaaa atcgcggcgg
     1681 gatttgcggc gcaaggcgag atgcagcgcc aggccggaca ccgaaatccc gatcagcacc
     1741 gaagcagtga cataagacag gtcccacacc gcgcgcgcgg gaagttccac cgccgccatc
     1801 ccggtgtaat gcatggcgca gatggccaag ccggtgacca ctccgcccaa ggcgccgctg
     1861 atcctgaccg ccagcgcaaa gcctacgccg cagagagtca tggcgatcag agccgaggtg
     1921 acggtgaggc cggtggcgaa tccgatcggc aggccggtcg aataagccag catggcgacg
     1981 aaatgcgtgc cccagatgcc gcagcccgcc accgcaccgg ccccggccag ccaggtcagg
     2041 cggccgcggc cgggctccgc ggcgcgggcg cgcgcgatca tggtgagcgc cgtggcgcag
     2101 gccagcaggc agagcccagc cgccaccacc acaagtctca ggtcatgctg caggaagatg
     2161 c
//
LOCUS       DATMDK010000304         2124 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_138114,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000304 DATMDK010000000
VERSION     DATMDK010000304.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2124)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2124)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2124
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_138114"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1015
                     /locus_tag="VNN98_05900"
     CDS             <1..1015
                     /locus_tag="VNN98_05900"
                     /inference="COORDINATES: protein motif:HMM:NF019474.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HWM61664.1"
                     /translation="ARRFLEMLAAAGQSRGRYDDVEERRAALTNLADLVDPPGSEPVG
                     GVRDHLMAVHNGRGSDGHITLRIYSPLGEPARILPGILFFHGGGWVAGNLETHDGLCR
                     RLSNETGCRVIAVDYRLAPEHPFPYGLADAIAALNHVARNPKLFGLDPQRLGVAGDSA
                     GGTLAAILCRVARDAAEENKDAPRIAFQLLLCPILDVHGESAARRELAEGYFLDSETL
                     RRDLELYVPAGIELSDPRLSPLCAEEFAGLPPAFIHTGQFDPFSDEGEDYAQRLGGFG
                     VPVHGRAHPGMIHYFYCMPRMIPYAADAMRIIGTEIRYAVKLPQLPERRIHRRIRPEL
                     IRA"
     gene            complement(979..>2124)
                     /locus_tag="VNN98_05905"
     CDS             complement(979..>2124)
                     /locus_tag="VNN98_05905"
                     /inference="COORDINATES: protein motif:HMM:NF012711.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HWM61665.1"
                     /translation="AHVSHRRVMSWTHWFAGMTGAGAEDRLYNCLPMYHSVGGVVASG
                     AVLLGGGAVILREKFSRSAFWDDVARSGATIFQYIGELCRYLLTAEGDVPEHKLRLAV
                     GNGLSGDVWEAFQARFAIPQVLEFYAATEGNFSLYNVEGRPGAIGRIPPFLAHRFPTA
                     IVRFDEDSGQPARGADGFCIAVTRGEAGEVIGKIAGGAARFEGYTDPAATAKKILRDV
                     FKPGDAWVRSGDLMRQDAQGFFYFVDRIGDTFRWKGENVATTEVAAIVSSAPGVKAAN
                     IYGVAVPGQSGKCGMAALEVDSAFDLAAFRAHCAARLPAYAHPLFLRIVESLAITETF
                     KQKKHALALDGFDPGVIADLLYADCGQGYVALDADLYARISSGLIRL"
BASE COUNT          367 a          701 c          694 g          362 t
ORIGIN      
        1 cgcccgccgc tttttggaaa tgcttgccgc cgcggggcag agccgcggcc gctatgacga
       61 tgtcgaggaa cgccgcgccg ccctgaccaa cctggccgac ctggtggacc ccccgggcag
      121 cgaaccggtc ggcggggtgc gcgatcattt gatggccgtc cacaatggac ggggcagcga
      181 cggccatatc accttgcgga tttattcgcc cttgggcgaa ccggcgcgga tattgccggg
      241 catcttgttc tttcatggcg gcggctgggt ggcgggcaac ctggaaaccc atgacgggct
      301 gtgccggcgc ctcagcaacg aaactggctg ccgcgtgatc gcggtggatt atcggctggc
      361 gcctgagcat ccttttcctt atggcctggc cgacgccatc gcggcgttga accatgtggc
      421 acgcaatccc aaactgttcg gcctggaccc gcagcggctg ggcgtggcgg gcgacagcgc
      481 cggcggcacc ctggccgcca tcctgtgccg ggtcgcgcgt gacgcggccg aagaaaacaa
      541 ggatgcgccg cggattgcct tccagttgtt gctctgcccc atcctggatg tgcatggcga
      601 atccgccgcg cggcgcgaac tggcggaggg ctatttcctg gacagcgaga ccttgcgccg
      661 cgacctggag ctttacgtgc ccgccggcat cgagctgtcc gacccgcgcc tgtcgccgct
      721 ctgcgccgag gagttcgcgg gcctgccgcc cgccttcatc cataccggcc aattcgatcc
      781 cttcagcgac gagggcgagg actatgccca gcggctgggt ggtttcggcg tgccggtgca
      841 tggccgcgcc catcccggca tgatccatta cttctattgc atgccgcgca tgatccccta
      901 tgcggcggac gcgatgcgga tcatcggcac ggaaatccgg tatgcggtga agctaccgca
      961 gcttcccgag cgccggattc acaggcggat caggccggaa ctgatccgcg cataaaggtc
     1021 cgcgtccagc gcgacataac cctggccgca atcggcatag agcagatcgg caatgacgcc
     1081 ggggtcgaac ccgtccagcg ccaaagcatg ttttttctgc ttgaaggtct cagtgatcgc
     1141 caggctttcc acgatgcgca ggaaaagcgg gtgggcataa gcaggcaggc gagctgcgca
     1201 atgggcgcgg aaagcggcca ggtcgaaagc ggaatccact tccagcgccg ccatgccgca
     1261 tttgccgctt tggcccggca ccgccacgcc ataaatattg gcggccttta cgccgggtgc
     1321 ggaggacaca atcgcggcca cttcggtggt ggcgacgttt tcgcctttcc agcggaaggt
     1381 gtcgccgatg cggtccacga aatagaaaaa gccctgcgca tcctggcgca tcagatcgcc
     1441 gctgcgcacc caggcatcgc ccggcttgaa aacgtcgcgc aggattttct tggccgtggc
     1501 ggcaggatcg gtatagccct cgaaccgcgc cgcgccgccg gcgatcttgc cgatgacttc
     1561 gcccgcttcg ccgcgcgtca ccgcgatgca gaagccgtcg gcgccgcgcg ccggctggcc
     1621 gctgtcttca tcgaaccgca cgatggcggt ggggaagcga tgcgccagga aaggcgggat
     1681 gcggccgatg gcccctggcc tgccttccac attatagagc gagaaattgc cttcggtggc
     1741 agcgtagaat tccaggacct gggggatggc gaagcgggcc tggaaagcct cccagacatc
     1801 gcccgacaga ccgttgccca ccgccaggcg gagcttgtgc tccggcacat cgccttctgc
     1861 agtcagaaga tagcggcaca gctcgccgat atactgaaag atagtggcgc cgctgcgtgc
     1921 cacgtcgtcc cagaaggcgg agcgggagaa tttctcgcgc aggatcacgg cgccgccgcc
     1981 cagcagcacc gcaccgcttg ccaccacgcc gccgacgctg tggtacatgg gcaggcaatt
     2041 gtagagccgg tcttcggcgc ctgcccccgt catgccggcg aaccaatggg tccaactcat
     2101 cacccggcgg tggctgacat gcgc
//
LOCUS       DATMDK010000305         2194 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2432741,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000305 DATMDK010000000
VERSION     DATMDK010000305.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2194)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2194)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2194
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2432741"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1975
                     /locus_tag="VNN98_05910"
     CDS             <1..1975
                     /locus_tag="VNN98_05910"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: protein motif:HMM:NF024703.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-dependent DNA helicase"
                     /protein_id="HWM61666.1"
                     /translation="RQIVQEIAHLWPDPIERAEKAVVRKGRENYLCLLNFEEAAKRTA
                     LAPGQRTIVLALIARWISSGTDGDLSGVGFPAFLAAHMPLSTVTDRRGECIYAACPHY
                     RICFIERAIRRARHASIVVANHALVIAQASQDRASQDWLGEDETADTPNEYRLRYVFD
                     EGHHLFDAADSGFSAMLSGREMAELRRWIRGPEGRARTRMRGLEERLKDLVADDETAQ
                     QALDEAVQAAAALAGEGWTQRLGGGPRGPGEIFLTAAYSHVRGRSSDADAFYSLEAET
                     QPMSEAMLEAVRGLSRGLKRIADPLAKLARLLRKKMDDKTAALEPYTKARLDAAARGL
                     DRRAKTILPAWIQMLDTLEHGEIPEEFIDWFEIVREDGRNADVGLKRHWVDPTKPFST
                     TVLEPAHGALITSATLRDSGGDADDHWASAEIRTGAGHLPQPARRSHFGSPFKYEDQS
                     RIFIVKDVVRRDPDALAAAYRELFLASGGGALGLFTAVRALKDTGARIAAPLAEAGLT
                     LYAQHIDRLDTGALVDLFRAEENACLLGTDALRDGVDVPGRSLRLVVFDKVPWPKPAI
                     LHKARRAKFGKGYDDLITRFRLKQAFGRLIRGPGDRGCFVILEGATPSRLLTAFPEKS
                     PVKRCGLVEAIGDIRAFLGEGTVTHAPAPLITG"
     gene            1975..>2194
                     /locus_tag="VNN98_05915"
     CDS             1975..>2194
                     /locus_tag="VNN98_05915"
                     /inference="COORDINATES: protein motif:HMM:NF018287.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008829 - dCTP deaminase activity
                     [Evidence IEA];
                     GO_process: GO:0009394 - 2'-deoxyribonucleotide metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2'-deoxycytidine 5'-triphosphate deaminase"
                     /protein_id="HWM61667.1"
                     /translation="MAATLETLHSLSGEESYGRFSTGILPSHVLKRLLDQGRELTASE
                     AFAPGQIQPASIDLRLGPVAYRVRASFLP"
BASE COUNT          366 a          740 c          729 g          359 t
ORIGIN      
        1 gcgccagatc gtgcaggaga tcgcccatct gtggcccgat cccatcgaac gcgccgaaaa
       61 ggcggtggtg cgcaaggggc gggagaatta tctctgcctg ttgaactttg aagaagcggc
      121 gaagaggaca gcgctggcgc ctggccaacg caccatcgtg ctggcgttga tcgcgcgctg
      181 gatttcctcg ggcaccgatg gcgatttgtc gggcgtgggc tttcccgcct tcctggcggc
      241 gcatatgccg ctctccaccg tcaccgaccg gcggggcgaa tgcatctatg ccgcctgtcc
      301 gcattaccgc atctgcttta tcgagcgcgc catccgccgc gcccgccacg ccagcatcgt
      361 ggtcgccaat catgcactgg tgatcgcgca ggcttcgcaa gaccgggcct cgcaggattg
      421 gctgggcgaa gacgagaccg ccgacacgcc caacgaatac cgcctgcgct acgtcttcga
      481 cgaaggccac catctgttcg acgccgcaga cagcggcttt tcggccatgc tgtcggggcg
      541 ggaaatggcg gagctgcggc gctggatccg gggaccggag ggccgcgccc gcacccgtat
      601 gcgcgggctg gaagaacggc tcaaagatct ggtcgccgat gacgaaaccg cccagcaggc
      661 gctggacgag gcggtgcagg cggcagcggc gctggcgggc gaaggctgga cgcagcgatt
      721 gggtggcggt ccgcgcggcc ccggcgaaat cttcctcact gccgcctata gccatgtgcg
      781 cggccgcagc agcgacgccg atgcttttta ttctcttgaa gccgaaaccc agccgatgag
      841 cgaagccatg ctggaggcgg tgcgcggcct gtcgcggggc ctgaagcgca tcgccgatcc
      901 tctggccaag ctggcgcggc tgctgcgcaa aaagatggac gacaagaccg cggcgctgga
      961 gccttacacc aaagcccggc tggacgccgc cgcgcgcgga ctggaccgcc gcgccaagac
     1021 catcctgccc gcctggattc agatgctcga cactttggag catggcgaga taccggaaga
     1081 attcatcgac tggttcgaga tcgtgcgcga ggacggccgc aacgccgatg tcgggcttaa
     1141 gcgccattgg gtggacccca ccaaaccctt ctccaccacg gtactggagc cggcgcatgg
     1201 cgcgctgatc acctcggcca ccttgcgcga cagcggcggc gatgccgacg atcattgggc
     1261 cagcgccgag atccgcaccg gcgccgggca tttgccccag ccggcgcgcc gcagccattt
     1321 cggctcgccg ttcaaatatg aagaccagtc gcgcatcttc atcgtcaagg acgttgtccg
     1381 ccgcgatccc gacgcgttgg ccgctgctta tcgcgaattg ttcctggcct cgggcggtgg
     1441 cgcgctgggc ctgttcaccg cggtgcgcgc gctcaaagac acgggagccc gcatcgccgc
     1501 gccgctggcg gaggcggggc tgacacttta tgcccagcat atcgaccggc tggacaccgg
     1561 cgccctggtg gacctgttcc gggccgagga aaatgcctgc ctgctgggga ccgacgcctt
     1621 gcgcgatggg gtggacgtgc cgggccgctc tctcaggctg gtggtgttcg acaaggtgcc
     1681 ctggcccaag cccgccatcc tgcacaaggc gcggcgggcg aagttcggca agggctatga
     1741 cgacctgatc acccgcttcc gcctgaaaca ggctttcggg cggctgatcc ggggtccggg
     1801 tgaccggggc tgtttcgtaa ttctggaagg ggcgacgccc agccggctgc tgaccgcctt
     1861 cccggaaaaa agcccggtta aacgctgcgg cctggtcgag gcgattgggg atatccgcgc
     1921 ctttctaggc gagggaaccg tgacccacgc ccccgccccg cttataaccg ggtgatggcc
     1981 gcaaccctcg aaaccctgca ttccctttcc ggcgaagaaa gctacggccg cttctcgacc
     2041 ggcatcctgc ccagccatgt gttgaagcgg ctgctggacc agggccgcga gctcaccgcg
     2101 tcggaagcct tcgcacccgg ccagatccag cctgccagca tcgacttgcg cctggggcct
     2161 gtcgcctacc gggtccgcgc cagcttcctg ccgg
//
LOCUS       DATMDK010000306         2165 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_614849,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000306 DATMDK010000000
VERSION     DATMDK010000306.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2165)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2165)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2165
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_614849"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..817)
                     /locus_tag="VNN98_05920"
     CDS             complement(<1..817)
                     /locus_tag="VNN98_05920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013202337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alcohol dehydrogenase catalytic
                     domain-containing protein"
                     /protein_id="HWM61668.1"
                     /translation="MKTRAAVAYAAGKPLVIEEVELDGPRSGEVLVEIKATGVCHTDE
                     FTRSGADPEGLFPVILGHEGAGVVLEVGPGVTGLKKGDHVIPLYTPECRQCKSCTSHK
                     TNLCTAIRSTQGQGVMPDGSSRFSLRGQKIHHYMGCSTFANHTVLPEIALAKIRSDAP
                     FDKVCTIGCGVTTGIGAVINTAKVEPGANVVVFGLGGIGLNVLQGARMAGANMIVGVD
                     LNPARESLARQFGMTHFVNPKEVKGDLVPHLVELTKGGADYSFECVGNVDLMRQ"
     gene            1022..1798
                     /locus_tag="VNN98_05925"
     CDS             1022..1798
                     /locus_tag="VNN98_05925"
                     /inference="COORDINATES: protein motif:HMM:NF012894.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OmpA family protein"
                     /protein_id="HWM61669.1"
                     /translation="MRFTSRLAVAAGFGLALTGAAFAQGVDSGLEVRVNPIAPRGGGV
                     LLYPGGEYSRTVPPLLMPGERGGPIHLHMPAPHRRTVAHAAPPQEPKPPRPKRVAKAE
                     PAPARTPTPSAPASAPYENPFGGAANLGNVFASTAPPKTAPAGPATGNESLTKRSVIL
                     FAKDAPDPAKAALGAIKFLAGDLNASMTSPNARVELEAFGGAKGDKGSDAHRLSLKRA
                     LAIRQVLIDDGVASDRIDVHANGGTDDSGPTDRVDVYVKA"
     gene            1964..>2165
                     /locus_tag="VNN98_05930"
     CDS             1964..>2165
                     /locus_tag="VNN98_05930"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61670.1"
                     /translation="MRSFLAAILFLLAGAQGAAAASSESLGTDVAIALPVIAGGLTLY
                     KDDWKGAAQLTVDTVATVGIAYG"
BASE COUNT          362 a          723 c          681 g          399 t
ORIGIN      
        1 cttggcgcat cagatcgaca ttgccgacgc actcaaacga ataatccgcg ccgcccttgg
       61 tcagttcgac cagatgcggc accagatcgc ccttcacctc tttcggattc acaaaatgcg
      121 tcatgccgaa ctggcgggcc aggctttcgc gcgccggatt gaggtccacg cccacgatca
      181 tattggcgcc cgccatccgc gcgccctgga gcacattgag cccgatgccg cccaacccga
      241 acaccaccac attggcgccg ggttcgacct tggcggtgtt gatcaccgcg ccgataccgg
      301 tggtgacgcc acagccaatg gtgcagacct tgtcgaacgg cgcgtcgcta cggatcttgg
      361 ccagcgcgat ctccggcagc accgtgtggt tggcgaaggt cgagcagccc atatagtgat
      421 ggatcttctg gcctcgaagc gagaaacggc tgctgccgtc aggcatcacg ccctggcctt
      481 gggtgctgcg gatggcggtg cagagattgg tcttgtgcga ggtgcagctt ttgcactggc
      541 ggcattcggg cgtgtagagc gggatgacat ggtcgccctt tttcagcccc gtgacgccag
      601 gccccacctc cagcaccaca ccggcgcctt cgtggcccag gattaccggg aacaggcctt
      661 cgggatcggc ccccgagcgg gtgaactcgt cggtgtggca gacgcccgtg gctttgattt
      721 cgaccagcac ctcgccggac cgggggccgt ccaattccac ctcctcgatc accaggggtt
      781 ttccggcggc gtaagcgacg gcggcgcggg ttttcaaggt ggatcatcct tcacaggctt
      841 tcttcccccg tagcgcgcca gcgcttggcg ggggaagatg tccggtagcg ggcttgcccg
      901 cgtgccggac agatgggggc gagaaaacgt cattggaaat ctggggcatt tggcaggtat
      961 tgcaaagcct tagattaccg ctaggctatg gactgggccc tttcctgagc tgtcatactc
     1021 catgcgtttc acgtcaagac tcgctgttgc cgccggcttc gggctggcgc ttaccggcgc
     1081 cgctttcgcg caaggcgtgg attccggcct ggaagtgcgg gtcaatccca tagccccgag
     1141 gggcggcggc gtgctgctct atccgggcgg ggaatattcc cgcaccgtgc cgccgctgct
     1201 catgcccggc gagcgcggcg gcccgatcca cctgcatatg cctgcaccgc accgccgcac
     1261 ggtcgcccat gccgcgccgc cgcaggagcc caagccgccc aggccgaaac gggttgccaa
     1321 ggccgagccg gcgccggccc gcaccccaac cccttccgcg cctgcgtccg cgccttatga
     1381 gaatccgttc ggcggtgccg ccaatctggg caatgtcttc gccagcacag ccccgcccaa
     1441 aaccgccccg gcgggtccgg ccaccggcaa tgagagcctg accaagcgca gtgtgattct
     1501 gttcgccaag gacgcacccg atccggccaa ggccgcccta ggcgcgatca aattcctggc
     1561 cggcgatctc aacgcttcca tgaccagccc caatgcccgg gtggaactgg aggcctttgg
     1621 cggcgccaag ggcgataagg gctcagacgc gcatcggctg tcgctcaagc gcgccttggc
     1681 catccgccag gtgctgattg atgacggcgt ggcgtccgac cgtatcgatg tacacgcgaa
     1741 tggcggcacc gacgattcag ggcccactga ccgcgtggac gtttatgtca aagcctagtc
     1801 gggccctggt ttttgatggt cgcacgggcg acggctcgct acgctcgcct gcccgatgct
     1861 ccggccccac cgaccgggtc gatgtctacg tcaaagcctg actttaattt aagccggtag
     1921 gttccagctt ttctttgacc agacaaggcg ttagacgagg tccatgcgtt ctttccttgc
     1981 ggcgatactt ttccttctgg cgggcgcgca aggcgccgct gcggccagca gcgaaagcct
     2041 gggcaccgac gtcgccatcg ccctgccggt gatcgcgggc ggcctcacgc tttacaaaga
     2101 tgactggaaa ggcgcggcgc agctgacggt ggacaccgtg gcgacggtgg gcatcgccta
     2161 tggcc
//
LOCUS       DATMDK010000307         2941 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2206547,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000307 DATMDK010000000
VERSION     DATMDK010000307.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2941)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2941)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2941
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2206547"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..540
                     /locus_tag="VNN98_05935"
     CDS             <1..540
                     /locus_tag="VNN98_05935"
                     /inference="COORDINATES: protein motif:HMM:NF012596.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase-related protein"
                     /protein_id="HWM61671.1"
                     /translation="GKVLEQLYHPLFRRLRDLDMPIVTAVNGAAVGIGMSLALMGDLT
                     VAAQSSYFLLSFARIGLVPDGGATWLLPRLIGLARARELALLAEKLPAARALEWGLIN
                     RVVEDERLMDESLALAHRLAEGPAAQRLTRKLFWDETGYETQLAREAAAQEHAGATED
                     FAEGLAAFQGKREPKFTGK"
     gene            complement(714..1109)
                     /locus_tag="VNN98_05940"
     CDS             complement(714..1109)
                     /locus_tag="VNN98_05940"
                     /inference="COORDINATES: protein motif:HMM:TIGR00049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster assembly accessory protein"
                     /protein_id="HWM61672.1"
                     /translation="METPVNNHGQKPRRERPKPVKLTEAAATRIAAIMAGADGKYVGV
                     RVGVTNGGCAGMSYTMDYAQEAKPFEEVMEDKGVKIFIDPKAILFLIGTELDFVQEKL
                     GARFMFNNPNQTSACGCGESVQITPARDA"
     gene            complement(1109..1453)
                     /locus_tag="VNN98_05945"
     CDS             complement(1109..1453)
                     /locus_tag="VNN98_05945"
                     /inference="COORDINATES: protein motif:HMM:TIGR02945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SUF system Fe-S cluster assembly protein"
                     /protein_id="HWM61673.1"
                     /translation="MSEPAVSALSKQELDDFTTKLVIALKTVFDPEIPVDIYELGLIY
                     KVDVADNKDVKVDMTLTAPNCPVAGEMPGNVKAALETVDGIGEVTVTMTFDPPWTPER
                     MSEEAKLELNMF"
     gene            complement(1450..1896)
                     /locus_tag="VNN98_05950"
     CDS             complement(1450..1896)
                     /locus_tag="VNN98_05950"
                     /inference="COORDINATES: protein motif:HMM:TIGR01994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SUF system NifU family Fe-S cluster assembly
                     protein"
                     /protein_id="HWM61674.1"
                     /translation="MTDNALRELYQEVILDHSRHPRHFGALEGASHKAEGYNPLCGDR
                     VTVYLNLGEDGRVADIKFQGKGCAISQASASMMTDLLKGRTADEADRLMQGFLHLVKG
                     EDASGLSEDDRETLDVMSGISEFPMRVKCATLAWHTYKNAVEEGAT"
     gene            complement(1907..>2941)
                     /locus_tag="VNN98_05955"
     CDS             complement(1907..>2941)
                     /locus_tag="VNN98_05955"
                     /EC_number="2.8.1.7"
                     /inference="COORDINATES: protein motif:HMM:NF012488.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_function: GO:0031071 - cysteine desulfurase activity
                     [Evidence IEA];
                     GO_process: GO:0006534 - cysteine metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine desulfurase"
                     /protein_id="HWM61675.1"
                     /translation="AAATDRYEAARCTVQKFLNAAREDEIVFTKGGTEAINLVSYSYL
                     APLIQPGDEIVLTVMEHHSNIVPWHFLRERAGAVLRWVDVRDDGSLDIEALDAAIGPK
                     TKLIAVTHMSNVLGTVTPLKDIVARAHAKGVPVLADGCQGAVHEIIDVQALDIDFYAI
                     TGHKLYGPTGIGALYAKRAHLKAMRPFNGGGEMIREVALDRISYADPPARFEAGTPPI
                     IESVGLAAALDYLSSFDRAAIAAHEHDLLTYAREQVRQFNWLKVIGDAPGKGAILSFE
                     AEGMHAHDLATILDREGVAVRAGHHCAQPLMERFGVASTSRASFALYNTRADVDALIA
                     GLAKARGILT"
BASE COUNT          501 a          929 c          942 g          569 t
ORIGIN      
        1 ggcaaggtgc tggagcagct gtatcatccc ctgttccggc ggctgcgcga cctggatatg
       61 cccattgtga cggcggtgaa cggcgctgcg gtggggatcg gcatgagcct ggcgctgatg
      121 ggcgatctga ccgtggcggc gcagtcctct tatttcctgc tgtccttcgc acgcatcggg
      181 ctggtgcccg acggcggcgc cacctggctg ctgccgcgcc tgatcggcct ggcgcgggcg
      241 cgcgaactgg cgctgctggc ggaaaagctg ccggcggcgc gcgccctgga atggggcctg
      301 atcaaccggg tggtggagga tgagcggctg atggacgaat ccctggccct ggcccatcgc
      361 ctggcggaag ggcctgccgc ccagcgtctg acccgcaagc tattctggga cgagacgggt
      421 tatgagacgc agctggcgcg cgaggcggcg gcgcaggaac acgccggggc gacagaggat
      481 ttcgcggagg gattggctgc attccaggga aaacgcgagc cgaaatttac cgggaaataa
      541 ttagcaacgg actgtgccaa gtccccctca cccgcggtcg ctgcgctccc ttgccctctc
      601 cccctaaggg ggagagggaa gagcccgcgc aatatttgcg cgggcgaggg tgagggggaa
      661 ggtggcgcag caattaaatc tgttctaacc agcggccggg aatgacagtg agcttacgcg
      721 tcccgagccg gcgtaatctg caccgactcg ccgcaaccac acgcacttgt ctggttcgga
      781 ttgttgaaca tgaaccgcgc gcccagcttc tcctgcacaa aatccaattc ggtgccgatc
      841 aggaacagga tcgccttggg gtcgatgaag atcttgaccc ccttgtcctc catcacttcc
      901 tcgaagggct tggcctcctg cgcatagtcc atggtgtagc tcatgccggc gcagccgcca
      961 ttggtgacac ccacccgcac cccgacatat ttgccatcgg caccggccat gatcgctgcg
     1021 atacgcgtcg cggcggcctc ggtcagcttg accggcttgg ggcgttcgcg gcggggcttt
     1081 tgcccatggt tgttgactgg ggtttccatc agaacatgtt caattcgagt ttggcttctt
     1141 cgctcatgcg ttccggcgtc cagggcggat cgaaggtcat ggtgacggtg acttcgccga
     1201 taccatccac cgtttccagc gccgccttga cgttgccggg catctcgccc gccaccggac
     1261 agttgggcgc ggtcaatgtc atgtccacct tgacgtcctt gttgtccgcc acatccacct
     1321 tatagataag acccagttcg tagatatcaa ccgggatttc cgggtcaaac acggtcttga
     1381 gcgcaatcac cagcttggtg gtgaagtcat ccagttcctg tttgctgagg gcggagaccg
     1441 cgggctcgct catgtcgcgc cctcctcgac ggcattctta taggtatgcc aggccaaggt
     1501 ggcgcatttc acccgcatgg gaaactcgct gatcccgctc atcacgtcca aagtttcgcg
     1561 gtcatcttcc gacaggccgc tggcgtcctc gcccttcacc aggtgcagga agccctgcat
     1621 cagcctgtcg gcctcgtccg cggtgcggcc cttgagcagg tcggtcatca tcgaggcgct
     1681 ggcctggctg atggcgcagc ccttgccctg gaacttgatg tcggcgaccc ggccgtcttc
     1741 gcccagattc aggtaaaccg tcacccggtc gccgcacagc gggttgtagc cttccgcctt
     1801 atggctggcg ccttccagcg cgccgaaatg gcgcggatgg cgcgaatggt cgaggatgac
     1861 ctcctgatac agttcgcgaa gcgcattgtc cgtcatgcca aatccattac gtcagaatcc
     1921 cgcgggcttt cgccaggccc gcaatcagcg catccacatc ggcgcgtgtg ttgtacaagg
     1981 caaagctggc ccggctggtc gaagccacgc cgaaccgctc catcagcggc tgggcgcagt
     2041 gatgcccggc gcggaccgcc acgccttccc tgtccaatat ggtggcgagg tcgtgggcat
     2101 gcatcccctc ggcctcgaat gacaggattg cgcctttgcc gggggcgtcg ccgatcacct
     2161 tgagccagtt gaactggcgg acctgttcgc gggcataggt cagcaggtca tgttcatggg
     2221 cggcgatagc ggcgcggtcg aaggacgaca ggtaatccag cgccgcggcc aggccgacgc
     2281 tttcgatgat cggcggggtg ccggcctcga agcgggccgg cggatcagca tagctgatgc
     2341 ggtccagggc gacttcgcga atcatctcgc cgccgccatt gaaggggcgc atggctttca
     2401 agtgcgcgcg cttggcatac agcgcgccga tgccggtggg gccgtaaagc ttgtggccgg
     2461 tgatggcata gaagtcgata tccagcgcct gcacgtcgat gatttcatgc accgcgccct
     2521 ggcagccatc ggccagcacc ggcacgccct tggcatgggc gcgcgcgacg atatccttca
     2581 gcggcgtcac cgtgcctagc acgttggaca tatgggtgac cgcgatcagt ttggttttgg
     2641 gcccgatggc cgcgtccagc gcttcgatat ccaggctgcc gtcatcgcgc acatccaccc
     2701 aacgcagcac cgcgccggcg cgttcgcgca ggaaatgcca aggcacgata ttggaatgat
     2761 gctccatcac cgtcagcacg atctcgtcgc ccggctggat caggggcgcg agataggaat
     2821 aggacaccag attgatcgcc tcggtgccgc ctttggtgaa gacgatctcg tcctcgcggg
     2881 cggcattcag gaacttctgc accgtacacc gcgccgcctc atagcggtcg gtggcggcgg
     2941 c
//
LOCUS       DATMDK010000308         2697 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1061190,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000308 DATMDK010000000
VERSION     DATMDK010000308.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2697)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2697)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2697
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1061190"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..297)
                     /gene="modA"
                     /locus_tag="VNN98_05960"
     CDS             complement(<1..297)
                     /gene="modA"
                     /locus_tag="VNN98_05960"
                     /inference="COORDINATES: protein motif:HMM:NF024921.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009897 - external side of plasma
                     membrane [Evidence IEA];
                     GO_component: GO:0030288 - outer membrane-bounded
                     periplasmic space [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0015412 - ABC-type molybdate transporter
                     activity [Evidence IEA];
                     GO_function: GO:0030973 - molybdate ion binding [Evidence
                     IEA];
                     GO_process: GO:0015689 - molybdate ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter substrate-binding
                     protein"
                     /protein_id="HWM61676.1"
                     /translation="MSLSTTLIRLLTRRAFGLIAAALVLLPATASSQLAASVTVFAAA
                     SLTDSLKSVADAYQAKTGSKIVLSFGASSTLARQIEQGASADLFFSADTDWMDYL"
     gene            345..1574
                     /gene="glp"
                     /locus_tag="VNN98_05965"
     CDS             345..1574
                     /gene="glp"
                     /locus_tag="VNN98_05965"
                     /inference="COORDINATES: protein motif:HMM:NF045515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:1990586 - divisome complex [Evidence
                     IEA];
                     GO_function: GO:0061599 - molybdopterin molybdotransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006777 - Mo-molybdopterin cofactor
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="gephyrin-like molybdotransferase Glp"
                     /protein_id="HWM61677.1"
                     /translation="MSQSAMPAKRGLAGVAEARATMLAAVKALDSETAPLEEALGRVL
                     AAAVSAARNQPPFAASAMDGYALRSADAPGRLKLIGESAAGRGFVGRCETGTIIRIST
                     GAPMPDGADTIVIQEDATREGDEVIVPAAAPGSYIRPRGGDFKTGAVLLPAGRRLDGV
                     ALGLAAAAGAAMLPVVRRPRVTILSSGDELAAPGTAPGPFQIYDSATYGIAALIQSWG
                     GEPRRLAIERDDAQAIARAAQQGLEDSDLLVVLGGASVGDHDHAKPALLRLGLQIAVE
                     KIAVRPGKPAWFGTTPLGPVLGLPGNPASALVCACIFLRPLIEAMLGRDPAACTAFRR
                     AHLVQSLPANGPREHYLRAHVGSDGDGRLTAQAFENQDSSLLSVFSAANGFIRLAPDE
                     PARDAGAVVDILLLDAL"
     gene            1574..2257
                     /gene="modB"
                     /locus_tag="VNN98_05970"
     CDS             1574..2257
                     /gene="modB"
                     /locus_tag="VNN98_05970"
                     /EC_number="7.3.2.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR02141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015098 - molybdate ion transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015689 - molybdate ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter permease subunit"
                     /protein_id="HWM61678.1"
                     /translation="MLSPAEWQILATSFAVATRALIWSLPFAIAIAFALSRPRFPGKL
                     ALDGLTHLPVILPPVLIGFLLLLLFGRRGLLGGWLTAAGIHLPFTQAGAALATAVMIF
                     PLLVRSIRLAFEATDPRLFDAAAVLGAGPWDRFFTIALPLAGPGILAGAVTGFAAAMG
                     EFGAVITFAANIPGQTQTLPLAIYAVLQEPGGEAHALRLAAMSFALAMLGLIAAEVLQ
                     RWTRRRITG"
     gene            2254..>2697
                     /locus_tag="VNN98_05975"
     CDS             2254..>2697
                     /locus_tag="VNN98_05975"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HWM61679.1"
                     /translation="MNAALEVDARLRLGGLELEARFTAPGDGITVLFGPSGSGKSTLL
                     SLIAGLVRLGSGRIALGGQVCDGDGIHVAPHRRGIGLVFQDARLFPHLTARRNILYAR
                     RRAAEAKRLDMAEVARFFDITALLDRPVRNLSGGEKSRVALARALV"
BASE COUNT          369 a          852 c          973 g          503 t
ORIGIN      
        1 cagataatcc atccagtcgg tgtcggcgga aaagaacagg tcggcgctgg cgccctgttc
       61 gatctgccgc gccagggtcg aggaggcgcc gaaggacagc acgattttgc tgccggtctt
      121 ggcttgataa gcgtccgcga cgcttttcag actgtcggtc agggaggccg ccgcgaacac
      181 cgtgacgctg gccgccagct ggctgctggc ggtagcgggc agcagcacca aagcggcggc
      241 gatcaggcca aaggcgcggc gggtcaagag acggatcagg gttgtggaca agctcattct
      301 cgcggcctag cgttgattta gcgttagata caggcgggaa taacgtgtca cagagcgcca
      361 tgcctgccaa gcggggactc gccggtgtcg cggaagcccg cgccaccatg ttggccgccg
      421 tgaaggcgct ggacagcgag accgcgccgc tggaagaagc gctgggccgg gttctggcgg
      481 cggcggtgtc ggcggcgcgc aaccagccgc cctttgcggc atcggccatg gacggatacg
      541 ccctgcgcag cgccgatgcg cccggccggc tcaagctgat cggagaatcc gccgctgggc
      601 gtggatttgt gggccgctgc gaaaccggga ccatcattcg catttccacc ggcgcgccga
      661 tgccggacgg cgccgacact atcgtgatcc aggaagacgc tacgcgtgag ggcgacgaag
      721 tgatcgtgcc ggccgcggcg ccgggcagct atatccgtcc gcgcggcggt gatttcaaga
      781 cgggcgccgt gctgctgcct gcggggcgca gactcgatgg tgtggcgctg gggcttgcgg
      841 cggcggccgg cgccgcaatg ctgccggtgg tgcgccggcc gcgtgtgacc atcctgtcca
      901 gcggcgacga attggcggcg cccggtacgg cgcctgggcc gtttcagatt tacgactccg
      961 ccacctatgg catcgctgcc ctgatccaaa gctggggcgg ggagccgcgc cgcctggcca
     1021 tcgaacgcga cgatgcgcaa gccatcgcgc gggccgcgca gcagggtctg gaagacagcg
     1081 acctgctggt ggtgttgggc ggcgcctcgg tgggcgatca cgatcatgcc aagccggcgc
     1141 tgctgcggct aggtttgcag atcgcggtgg agaagatcgc cgtgcggccc ggcaagccgg
     1201 cctggttcgg caccacgccg ctgggaccgg tgctggggct gccgggcaat cccgcttcgg
     1261 cgctggtgtg cgcctgtatt tttttgcggc ctttgattga agccatgctg ggccgcgacc
     1321 cggcggcctg caccgccttc cgccgcgccc atctggtgca gtcacttccc gccaacggtc
     1381 cgcgcgaaca ttatctgcgc gcccatgtcg gcagcgacgg agacggcagg ctgacggcgc
     1441 aggcgtttga aaatcaggat tcgtctttgc tgtcggtgtt ttccgccgcc aacggcttta
     1501 ttcgtcttgc gccggatgaa ccggcgcgcg atgcgggcgc agtggtggac atattgctgc
     1561 tggatgcact gtgatgctgt cgccggcgga gtggcagatt ttggcgacca gtttcgcagt
     1621 tgctacacgg gcattgatct ggtcgctgcc attcgccatc gctatcgcct tcgctttgtc
     1681 gcggccgcgc tttcccggca agctggcgct cgatggcctc acccacctgc cggtgatcct
     1741 gccgccggtg ctgatcggtt tcctgttgct gttgcttttc ggtcggcgcg gactgttggg
     1801 cggctggctg acggcggcgg gcatccatct tccctttacc caagccggtg cggcgctggc
     1861 gaccgcggtg atgatctttc ctttgctggt gcgcagtatc cgtcttgctt ttgaagcgac
     1921 cgatccgcgg ctgttcgacg ccgccgcggt gctgggcgcg ggaccgtggg accgcttttt
     1981 caccatcgcc ctgccgctgg ccgggccggg cattctggcg ggcgcggtaa cgggtttcgc
     2041 cgccgcgatg ggggagttcg gcgcggtcat caccttcgcc gccaacattc ccggccaaac
     2101 ccagaccctg ccgctggcga tctatgcggt gctgcaggag ccgggcggcg aagcccatgc
     2161 gctgcggctg gcggcgatgt ctttcgctct tgctatgctg ggtctgattg ccgccgaggt
     2221 cttgcagcgc tggacgcgca ggcggattac aggatgaatg ccgcgctgga agtggatgcc
     2281 cgtctgcgcc tgggcggcct tgaactggag gcgcgcttca ccgcgcccgg cgacggcatc
     2341 accgtgctgt tcggtccctc aggcagcggc aagtccactt tgctgtcgct gatcgcgggc
     2401 ctggtgcgtc tgggcagcgg ccgcatcgcg ctgggtgggc aggtctgtga cggcgacgga
     2461 atccatgtcg cgccgcaccg gcgtggcatc gggctggtat ttcaggacgc gcggctgttt
     2521 ccgcacctga cggcgcgccg gaacattctt tacgcccggc gccgggcggc ggaggccaag
     2581 cggttggaca tggccgaggt ggcgcgcttc ttcgatatca cggcgctgct cgaccggccg
     2641 gtgcgcaatc tttcgggcgg ggagaaaagc cgggtggcgc tggcccgcgc cctggtc
//
LOCUS       DATMDK010000309         2926 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2206974,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000309 DATMDK010000000
VERSION     DATMDK010000309.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2926)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2926)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2926
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2206974"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(98..391)
                     /locus_tag="VNN98_05980"
     CDS             complement(98..391)
                     /locus_tag="VNN98_05980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009811081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005694 - chromosome [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="integration host factor subunit beta"
                     /protein_id="HWM61680.1"
                     /translation="MIKSELVARLTARYPHLYHRDVERIVTTVLDSISKALADGHRVE
                     LRGFGAFSVKVRPSRMGRNPRTGEPVSVGQKRAPFFRTGKELRERLNGGTPEA"
     gene            632..1939
                     /locus_tag="VNN98_05985"
     CDS             632..1939
                     /locus_tag="VNN98_05985"
                     /inference="COORDINATES: protein motif:HMM:NF012863.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SGNH/GDSL hydrolase family protein"
                     /protein_id="HWM61681.1"
                     /translation="MIIRHFALAVALILVTAAGAESAPRDTKDNWIGAWGFVPTPLPP
                     GLTPTPPVSSVIPLAAASAMPMTPPNAPLLDNPGNLPVAIADSDPSNVTIRQLVRVAV
                     AGKRIRLRFSNEGGSDALALGAVHVAAAGPDGSALPGSDHVVTFDGHGSTSIPASAPL
                     LCDPVELKVDALEKLVISVYLPGPLSRTGHSLFQYVASGDHSAAASLPGARLMHLPAL
                     VTQVEVDPVNADAVVVTLGDSITEGAASTNNAFRGWPDRLAERLAAVHSGWSVVNAGI
                     GGNRLLRYGTGPSALARLDRDVFSVSGIKAIILLEGINDIGRGFYPPTEPVTAEALIA
                     ADKQIIARAHAKGIKVYGATLTPYKGAHYFMPEGETVREAYNAWIKTGGAFDGVVDFA
                     PAVADKADATTFDPSFNLNDRLHPNDAGYQAMANIIDLKMIGK"
     gene            1940..2509
                     /locus_tag="VNN98_05990"
     CDS             1940..2509
                     /locus_tag="VNN98_05990"
                     /inference="COORDINATES: protein motif:HMM:NF025595.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4337 family protein"
                     /protein_id="HWM61682.1"
                     /translation="MSYDPALEAHEHAEHAEHAAHTRDPFIASVSITVAVLAVMAAAA
                     GSLETVEGGRAITESSEAVLAQDKATDSWNEYQADSLKRHMYGIASVAGSAKAEEYAK
                     EIGKDREGQDKARDKALEAEKDRDARLKSSARHEERHHWLTGAATLIEIGIALSTVAI
                     ITARRTFWFSAIGLGLVGAALFAAAYLGV"
     gene            2534..2773
                     /locus_tag="VNN98_05995"
     CDS             2534..2773
                     /locus_tag="VNN98_05995"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61683.1"
                     /translation="MNPRDLFGVALRMLGVWFVYNAAYAGLYLAMKEEAMPFNSTVSA
                     TQDKLLVGFYLALAFILLVLPNHVVALCYGPEKKT"
BASE COUNT          538 a          914 c          934 g          540 t
ORIGIN      
        1 ccgccgacat gactgcgcac acgctccgcc agctgatggg catagtcggg atcggtggtg
       61 tctagggcga cgaaaacggg gttcggaagc gtggctatca cgcttccggc gtaccgccat
      121 tcaggcgctc gcgcaattcc ttgccggtac ggaaaaaggg cgcgcgcttc tggccaaccg
      181 aaaccggctc gccggtgcgc ggattgcggc ccatgcggct tggacgcacc ttcacgctga
      241 aggcgccgaa gccgcgcagt tccacgcgat ggccgtccgc cagcgctttg ctgatggaat
      301 ccagcacggt ggtgacgatg cgctcgacat cgcggtggta gagatgcgga tagcgagcgg
      361 taagccgtgc aaccagttct gacttgatca tcccagcccc tttgagggac acgtcgccgg
      421 gttgagcccc gcgactaggg ataaactgtc acgggatgtt cctgcccgtc aacgggaagc
      481 atctgaaaaa ccagactttt tcgtatcctg gccccgtttt ggtccgtggg cgatgtattt
      541 tgccggtttc ctgcccgtcc tttaggcggc ttgcgcgacc ttcgggctca agagaaagtc
      601 gcggcaacta acaaagtatg gggagtggga catgataatt cgtcatttcg cgttggccgt
      661 ggcactgatt ctagtgacag cagccggggc tgagtcggcg ccgcgcgata ccaaagacaa
      721 ttggatcggc gcctgggggt ttgttcccac cccgctcccg cccggtctga cgccgacccc
      781 gccggtatcg tcggtgattc cattggccgc cgcatcggcc atgccgatga caccacccaa
      841 cgcgccgctg ctggacaatc ccggcaacct gccggtggcg attgccgata gcgatccctc
      901 caacgtcacc atccgtcagc tggtgcgagt ggcggtggcg ggcaagcgta tccgcctgcg
      961 tttcagcaat gaaggcggca gcgatgcctt ggcgctgggc gcggtgcatg tcgccgccgc
     1021 cggtcctgac ggcagcgcgc tgccgggcag tgaccatgtc gtgacattcg atggccatgg
     1081 cagcacgtct attcccgcca gtgcgccgct gctctgcgat ccggtggagc tgaaagtgga
     1141 tgcgctggaa aagctggtga tctccgtcta tctccccggc ccgctgtcgc gtaccggcca
     1201 cagcctgttc cagtatgtcg cgagcggcga ccacagcgcc gccgccagct tgccgggcgc
     1261 gcgcctcatg cacctgcccg ctttggtgac gcaggtggag gtggatccgg taaacgccga
     1321 tgccgtggtg gtgaccctgg gcgattccat caccgagggg gcggcatcga ccaacaacgc
     1381 ctttcgcggc tggcccgacc ggctggccga gcgcctggcc gcggtgcatt cgggctggtc
     1441 ggtggtgaat gccgggatcg gcggcaaccg cctgctgcgc tacggcaccg gccccagcgc
     1501 cctggcgcgg ctggaccgcg acgttttcag cgtctcgggc atcaaggcca tcatcctctt
     1561 ggaaggcata aacgatatcg gccgcggctt ttatccgccc accgagccgg tgaccgccga
     1621 ggccttgatc gccgccgaca aacaaatcat cgcccgcgcc catgccaagg gcatcaaggt
     1681 ctatggcgcc accctgacgc catataaggg cgcgcattat ttcatgcccg aaggcgagac
     1741 ggtgcgcgaa gcctataacg cctggatcaa gaccggtggc gcctttgacg gggtggtgga
     1801 tttcgcgccg gcggtggcgg acaaggctga tgccaccacc ttcgatccga gcttcaacct
     1861 gaacgataga ctgcatccca acgatgcggg ttatcaggcg atggccaata tcatcgacct
     1921 caagatgatc ggcaaataaa tgtcttacga tccggcgctg gaggcccatg aacatgccga
     1981 gcatgccgaa catgcggcgc atacccgcga tcccttcatc gccagcgtct ccatcaccgt
     2041 cgccgtgttg gcggtgatgg cggcggcggc gggttcgctg gagacggtgg aaggcggccg
     2101 cgccatcacc gagtccagtg aagcggtgct ggcgcaggac aaggccaccg acagctggaa
     2161 cgagtatcag gccgacagtc tgaagcggca catgtacggg atcgcctctg tggcaggcag
     2221 cgcgaaagcg gaagaatatg ccaaggagat cggcaaggac cgcgaaggcc aggacaaggc
     2281 gcgtgataaa gccctggagg cggaaaagga ccgcgacgca aggctgaaaa gcagcgcccg
     2341 gcatgaggaa cgccatcact ggctgaccgg cgccgccacc ttgatcgaga tcggcattgc
     2401 actgtccacc gtggcgatca tcaccgcacg ccgcaccttc tggttttccg ccatcgggct
     2461 tggcctggtg ggcgcggcgt tatttgccgc cgcctatctg ggcgtctgaa acaacgacag
     2521 cgaggcgaca atgatgaatc cgcgtgatct gttcggcgtg gccctgcgca tgctgggtgt
     2581 gtggtttgtc tacaatgcgg cctatgccgg attgtatctg gcgatgaagg aggaggcgat
     2641 gccgttcaac tccaccgtct ccgccaccca ggacaagctg ctggtcggct tctatctcgc
     2701 cttggctttt attctgctgg tgctgccgaa ccacgtcgtg gcgctgtgtt acggccccga
     2761 aaaaaagacc taagccgcct cgaccaccag atcgccctgc tgcatcagca cgccggcggt
     2821 atcgaagaag catcgatgct cggcgatctt gccgtccttc accgtccagt ggatggagat
     2881 atcgaactga acatatttgc cactgggctg gtgcagcgct tcggcc
//
LOCUS       DATMDK010000310         4033 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2434889,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000310 DATMDK010000000
VERSION     DATMDK010000310.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 4033)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4033)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4033
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2434889"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1227)
                     /gene="gltX"
                     /locus_tag="VNN98_06000"
     CDS             complement(<1..1227)
                     /gene="gltX"
                     /locus_tag="VNN98_06000"
                     /EC_number="6.1.1.17"
                     /inference="COORDINATES: protein motif:HMM:TIGR00464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009332 - glutamate-tRNA ligase complex
                     [Evidence IEA];
                     GO_function: GO:0004818 - glutamate-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006424 - glutamyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--tRNA ligase"
                     /protein_id="HWM61684.1"
                     /translation="MSVVVRFAPSPTGLLHVGNARTALLNWLFAKKMGGRFLLRIDDT
                     DAARSTKAFEEAIYRDLGWLGLSHDGTDRQINRLSVYSTAFYKLQAADRIYPCFETEA
                     ELDRQRSLLTARRQPPVYNRASLDPANKAKWEAEGRKPHWRFKLSRSKVSWTDQVRGP
                     VEIDTATMSDPVLVREDGAFLYTLPSVADDIDMAVSHVVRGEDHVTNTAAQIEIFQAL
                     GGAVPKFAHFPLLVGASGEALSKRLGSLSLEQLRDDSMEPLAVASYLAKIGTSDPVEP
                     RQSLGELAQEFDFAKIGRAPAHFVPEELNALNSKTLHLMPYSAVAGRVPQGEAFWEAI
                     KPNLTKLSDVAEMSRLVSGPVTPLIEDAGLAAKAAALLPPEPWDEGTWSLWTKAVSAD
                     TGAKGRGLFHPLRLALT"
     gene            complement(1384..3042)
                     /locus_tag="VNN98_06005"
     CDS             complement(1384..3042)
                     /locus_tag="VNN98_06005"
                     /EC_number="6.3.5.1"
                     /inference="COORDINATES: protein motif:HMM:NF010588.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003952 - NAD+ synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0009435 - NAD biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD+ synthase"
                     /protein_id="HWM61685.1"
                     /translation="MVDCFRIALAQLNPVVGDIAGNLARARAARAQAAGADVILFSEL
                     FIVGYSPEDLVLKPALQQDARAAVEELARDTDDGGPAILIGTPWVEHAALYNAVALLD
                     GGKVQGLTYKYELPNYGVFDEKRVFAQGPTPEPVTVRGVKLGIPICEDIWKQDVTIWL
                     ADAGAEIFCVPNGSPFEAGKEDVRLKLAAARIHETGVPLIYLNQLGGQDEVVYDGASF
                     VLNADQQIAVALPSWEEHIAITEWQRDTEGKWVCAPGDRFVAEERSSQVYHAMMLALR
                     DYVNKNRFPGVVLGLSGGIDSALSAAVAVDALGADRVRCVMLPSRYTSRESLEDADAC
                     ALALGVSYETIEIERAVAALGETLAAPFAGTKPDTTEENIQSRLRGVILMAISNKFGP
                     MVLTTGNKSEMSVGYATLYGDMCGGYNVLKDIYKTEVFRLCHWRNQTSPAGALGPRGR
                     VIPERIIDKPPSAELKPDQTDQDSLPPYDVLDGILECLVEHECSFEETVARGYDPATV
                     KRIEHLLYVSEYKRRQAPPGVKISSRNFGRDRRYPITNAFRDAR"
     gene            complement(3076..>4033)
                     /locus_tag="VNN98_06010"
     CDS             complement(3076..>4033)
                     /locus_tag="VNN98_06010"
                     /inference="COORDINATES: protein motif:HMM:NF013567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0016651 - oxidoreductase activity, acting
                     on NAD(P)H [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HWM61686.1"
                     /translation="ENGPLKAAVIGAGVFGHHHATKYKALGQAGKGVELFAIADPNAD
                     MRAKAKAHHGCVAVADWRELLGKVDLVSVCSPAITHAEVVRAFLTAGAHVMVEKPIAT
                     TMDEANELVALSRQTGKVLSVGHQERFVFARTGLLDLKEAPLEITCWRQGPWTGRGDD
                     VSVVLDLMIHDLDLVHTLVPGAVTDVRAEGLIEYGPHADEVFALLRFACGTIAKLETS
                     RVATERKRGLRAVYADGVVEIDFLARTVSNTTPRPLGQLELGDPLGEAVAGFIEAART
                     GVDALVTPEQAAQALETALWIEQASGVAVPMPAAQTRVAAGR"
BASE COUNT          717 a         1343 c         1253 g          720 t
ORIGIN      
        1 cgtcagcgca agccttaacg ggtgaaacag ccccctgccc ttggccccgg tatcggcgga
       61 aaccgccttg gtccaaagcg accaagtgcc ctcgtcccaa ggctcgggcg gcagcaaggc
      121 ggcggccttg gcggccaggc cagcgtcttc gatcaggggg gtcaccgggc cgctgaccag
      181 ccgggacatc tctgcaacat cggacaattt ggtgagattg ggtttgatcg cttcccagaa
      241 cgcttcgcct tgcggcacgc gcccggccac cgcgctgtac ggcatgaggt gcaaggtctt
      301 ggaattcagc gcattcaatt cttcgggcac aaaatgcgcc ggagcgcggc cgatcttggc
      361 gaaatcaaat tcttgtgcca gctcgcccag cgactggcgc ggctccactg ggtcggaggt
      421 gccgatcttg gcgagataag aggccaccgc cagcggctcc atgctgtcat cgcgcaactg
      481 ctccagcgac agcgatccca gccgcttgct cagcgcctcg ccgctggcgc ccaccagcaa
      541 aggaaaatgc gcgaacttcg gtaccgcccc gcccagcgcc tggaagattt cgatctgggc
      601 ggcggtgttg gtgacatggt cttcgccgcg caccacatga ctgacggcca tgtcgatatc
      661 gtcggccacc gacggcaagg tatagagaaa ggcgccgtcc tcgcgcacca gcaccggatc
      721 agacatggtc gcggtgtcga tctccaccgg cccgcgcacc tgatcggtcc agctcacctt
      781 gctgcgcgac agcttgaagc gccaatgcgg cttgcggcct tcggcttccc atttcgcctt
      841 gttcgcgggg tccagcgagg cgcggttgta gaccggcggc tgcctgcgcg ccgtcagcag
      901 ggagcgctgg cggtcgagct cggcttcggt ttcaaaacag ggataaatcc ggtccgccgc
      961 ctgcagcttg tagaaagcgg tgctgtagac cgacaggcga ttgatctggc ggtcggtgcc
     1021 gtcatggctg agacccagcc agcccaggtc gcgatagatc gcctcttcaa aggccttggt
     1081 cgaacgcgcc gcatcggtat cgtcgatccg cagcagaaag cggccgccca tcttcttggc
     1141 gaacagccag ttgagcagcg cggtgcgggc attgccgaca tgcagcagcc cggtgggcga
     1201 cggcgcgaaa cggacgacga cactcatagc ccaaccctcc ccttgaggga gggtcgaaat
     1261 tcgtgagcct ttgcgagaga atttcgggga ggggtcatgg cgccgtgctg tacccctccc
     1321 cgaattgctt cgcaattcga ccctccctca aggggagggt gaaaatacga gcgtgtttca
     1381 agcttatcgc gcatcgcgga acgcattcgt tatcggatag cgccggtcgc ggccaaaatt
     1441 gcggctgctg atcttcaccc ccggcggcgc ctggcggcgc ttatattcgg agacataaag
     1501 cagatgctct atccgcttca ccgtggccgg gtcatagccg cgcgccaccg tctcctcaaa
     1561 actgcattcg tgctccacca gacattccag gatgccgtcc agcacgtcat agggcggcaa
     1621 ggaatcctgg tcggtctggt ccggtttcaa ctcggcgctg ggcggcttgt cgatgatgcg
     1681 ctcggggatc acccggccgc gcggtcccaa cgcgccggcc ggcgaggtct ggttacgcca
     1741 atggcacagg cggaatactt cggtcttgta gatatccttc agcacattat agccgccgca
     1801 catgtcgcca taaagcgtgg catagcccac actcatctcg ctcttgttgc cggtggtcag
     1861 caccatgggc ccgaacttgt tggaaatcgc catcaggatc acgccgcgca ggcgcgactg
     1921 gatattctct tcggtggtgt cgggctttgt gccggcaaac ggcgccgcca gagtctcgcc
     1981 caacgccgcc acggcgcgtt cgatctcgat ggtctcgtaa ctcacgccca acgccagcgc
     2041 gcaggcatcg gcgtcttcca ggctttcacg actggtatag cgtgagggca gcatcacgca
     2101 gcgcacccgg tcggcgccca acgcatccac cgccaccgcc gccgacagcg ctgagtcgat
     2161 accgcccgac aggcccagca ccacgcccgg gaaacggttc ttgttcacat agtcgcgcag
     2221 cgccagcatc atggcgtgat agacctggga tgagcgctct tccgccacga accggtcgcc
     2281 tggcgcgcac acccactttc cttccgtatc gcgctgccat tcggtaatgg cgatatgctc
     2341 ctcccaggac ggcagcgcca ccgcgatctg ctgatcggcg ttcagcacaa aacttgcgcc
     2401 gtcatagaca acctcatcct gcccgcccag ctgattgaga tagatcagcg gcacgcccgt
     2461 ttcgtggatg cgggccgccg ccagcttcag ccgcacgtcc tccttgccgg cctcgaaggg
     2521 cgaaccattg ggcacgcaga aaatctccgc cccggcatcg gccagccaga tggtgacatc
     2581 ctgcttccag atatcctcgc aaatggggat gcccagcttt accccgcgca ccgtcaccgg
     2641 ctcgggtgtg gggccttgcg cgaagacccg cttttcgtcg aacacgccat aattgggcag
     2701 ttcgtatttg taggtcagcc cctgcacctt gccgccgtcc agcagcgcca cggcgttata
     2761 gagcgcggca tgctcgaccc agggcgtgcc gatcaggatg gcggggccgc catcgtcggt
     2821 gtcgcgcgcc agctcttcca ccgcggcgcg ggcgtcctgc tgcagcgccg gcttcagcac
     2881 caggtcttcg ggcgaatagc cgacaatgaa aagctccgaa aacaggatca catcggcgcc
     2941 ggccgcttgg gcccgtgcgg cgcgggcgcg cgccaggttg ccggcgatgt cgcccaccac
     3001 cgggttcagc tgcgcgagtg cgatacggaa acagtcaacc atgactgtta tctagcgtgg
     3061 gtgaggtaga tgttactagc ggcctgccgc gacccgggtc tgcgccgccg gcatgggcac
     3121 ggcaacgccc gaggcctgct cgatccacaa cgcggtttcc agcgcctggg cggcctgttc
     3181 cggcgtcacc agcgcgtcca ccccggtcct ggcggcttcg ataaagccgg ccacggcctc
     3241 gcccagcgga tcgcccagct ccagctggcc cagcgggcgc ggcgtggtgt tggagacggt
     3301 acgggcaagg aaatcgatct ccaccacgcc gtcggcatag acggcgcgca agccgcgctt
     3361 gcgttcggtg gcgacccggc tggtttccag cttggcgatg gtgccgcagg caaagcgcag
     3421 cagggcgaag acttcgtcgg catgcgggcc atattcgatc agcccttcgg cccgcacatc
     3481 ggtgacggcg cccggcacca aggtatgcac caggtcgagg tcatggatca tcaggtccag
     3541 caccaccgag acatcgtcgc cgcggccggt ccagggccct tgccgccagc aggtgatttc
     3601 caggggcgct tccttgagat caagcaatcc ggtgcgggcg aaaacgaaac gttcctgatg
     3661 gcccacggaa agaaccttgc cggtctggcg cgacagcgcc accagctcgt tcgcctcgtc
     3721 catggtggtg gcgatgggtt tttccaccat cacatgggcg ccggccgtca ggaaggcgcg
     3781 caccacctcg gcatgggtga tggcaggcga gcagacgctg accagatcca ccttgcccag
     3841 cagttcgcgc cagtcggcaa ccgcgacaca accatgatgg gctttcgcct tggcgcgcat
     3901 atcggcattg ggatcggcga tggcgaagag ttcgacgcct ttgcccgctt ggcccagggc
     3961 tttgtacttg gtggcgtgat ggtgaccgaa cacgccagcg ccgatcacgg cagctttcag
     4021 cggtccattt tcc
//
LOCUS       DATMDK010000311         2812 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_3361332,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000311 DATMDK010000000
VERSION     DATMDK010000311.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2812)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2812)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2812
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3361332"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1707)
                     /locus_tag="VNN98_06015"
     CDS             complement(<1..1707)
                     /locus_tag="VNN98_06015"
                     /inference="COORDINATES: protein motif:HMM:NF012722.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase dimerization/phospho-acceptor
                     domain-containing protein"
                     /protein_id="HWM61687.1"
                     /translation="MKHSLAKLLSVITGLLVVVLVSVFAIFARTAFERQRDADRILSI
                     VSVKRDMLSAQEAVRSEDAILDLVLEDKQAASQSTLALAVKLHARAQETFAHLKTRSN
                     QFTSGYVQILGESAAYDRALPRILGAAALPRETRPAGIVGELRSVAGALLSDLTRKSA
                     SLSRSISSPDPLITEMLRVNDIGWRTRGDAGADRHAVMSAILEGGMPTPKALGEFAEM
                     KGRVAASWAVIADDSRLSEFPDAIKAAVARANWLYFTDFMAKRKNVIQLLSLGKPVPL
                     SGSDWVQLSSHGVDAIMAVSNTALDLTESYAASQLAVARRNFIIAISLMLASIGLAGF
                     AALYVMGRVIRPLRAITRTMESIGGGNLRSEIPFGDRRDEIGQFAGALKMFRDATMER
                     IRLEKALVNSRVAQEIAETSSRVKSEFLANMSHELRTPLNAIIGFSDIMQHQIHGPLP
                     KGYEEYAALINESGNHLLSLITDILDLAKIEAGKFIVDLRDMDLEDTVDYCLRLTQRR
                     AEENEIGLIKTMAEGPLMFTADPRACKQILLNLLSNAVKFTRKGGTVEITAAATGDHV
                     SIS"
     gene            complement(1823..>2812)
                     /locus_tag="VNN98_06020"
     CDS             complement(1823..>2812)
                     /locus_tag="VNN98_06020"
                     /inference="COORDINATES: protein motif:HMM:NF014026.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 3 C-terminal
                     domain-containing protein"
                     /protein_id="HWM61688.1"
                     /translation="SQVAPQSGPALVVPTTFAGDDWQAVVLHPGSPVRAIAARAPGAQ
                     VTFDTGAYPAFAAARAKGADVAIVFVTQWTTEARDVPDLSLPEAQDALIAAVTAANPR
                     TIVVLETGGPVLMPWLDKTAAVLEAWYPGIKGADAIADILFGDVNPSGRLPITFPASL
                     EQTPRPKLDGLFDFDGRTHVNYDIEGSDVGYRWYDRKGLTPLFPFGFGLSYTSFRYDD
                     LKLRSEGNTIHASFTVTNTGNRQGRDTPQVYVTARGKTKGQRLIGWGNVELAPGASSK
                     VTVDTDPRLLADWSTPRQRWQVPAGRYDVTVNASATAAVLNDATGLEARLLPP"
BASE COUNT          504 a          874 c          932 g          502 t
ORIGIN      
        1 gctgatgctg acatggtcgc cggtggcggc ggccgtgatc tccaccgtgc cgcccttgcg
       61 cgtgaacttc acggcattgg acagcaggtt gagcagtatc tgcttgcagg cgcgcggatc
      121 ggcggtgaac atcagcgggc cttccgccat ggtcttgatc aggcctatct cattttcttc
      181 ggcccgccgc tgcgtcagcc gcaggcaata atcgacggta tcttccagat ccatgtcgcg
      241 caggtcaacg atgaattttc ccgcctcgat cttcgccagg tcgagaatgt cggtgatcag
      301 gctgagaaga tgattccccg attcattgat cagggcggca tattcctcat agcctttggg
      361 cagggggccg tgaatttgat gctgcatgat gtcggaaaaa ccgatgatcg cgttcaaggg
      421 tgtgcgcaat tcgtgactca tattggcaag gaattccgat ttgacccggc tggaggtttc
      481 cgcgatttcc tgcgccacac ggctgttcac cagcgccttt tccagccgga tacgctccat
      541 cgtggcatcg cggaacatct tgagggcgcc ggcgaattgg ccgatctcat cccggcggtc
      601 gccgaacgga atctcgcttc tcaggttgcc gccgccgata gattccatgg tccgggtaat
      661 cgcacgcagc ggccggatca cccgccccat cacatagagg gcggcgaagc cggccagtcc
      721 gatggaggcc agcatcaggc tgattgcgat gatgaagttg cggcgcgcga cggccagctg
      781 cgacgcggca taggattcgg tcaagtccaa agcggtgttc gacaccgcca tgatggcgtc
      841 cacgccgtgg ctggacagtt ggacccagtc agagccggac agcggcacgg gtttgcccag
      901 cgacaatagc tggatcacat tcttgcgctt ggccatgaag tcggtgaagt aaagccagtt
      961 ggcgcgcgca accgccgcct tgatcgcgtc gggaaattcg gacaggcggg aatcatccgc
     1021 gatcaccgcc caggaggcgg cgacccggcc cttcatttcc gcgaattccc ccagcgcttt
     1081 cggcgtgggc atgccgccct ccaggatggc gctcataacg gcatggcggt cggcgccggc
     1141 gtcgccgcgc gtccgccagc cgatatcgtt gacccgcagc atctcggtga tcagtggatc
     1201 gggggaagaa atgctgcgcg acagggatgc ggacttgcgg gtcaagtcac tcagcagcgc
     1261 gccggcgacg ctgcggagtt cgccaacgat gccggcggga cgtgtctcgc gcggcagcgc
     1321 ggccgccccg agaatgcggg ggagcgcccg gtcgtaggcg gcgctctccc ccaggatctg
     1381 cacatagccc gacgtgaact ggttggagcg ggtcttgaga tgcgcgaagg tttcctgcgc
     1441 gcgcgcatgc agtttcacgg ccagcgccaa ggtggattgg ctggcggcct gtttgtcctc
     1501 cagcaccaga tcgaggatgg catcctcgct gcgcaccgcc tcttgtgcgg acagcatgtc
     1561 ccgcttgacg ctgacaatgg aaagaatccg gtccgcatcc cgctggcgct caaaggcggt
     1621 cctggcgaag atcgcgaaca ccgacaccaa cacgaccacc agcaggccgg tgatgacgga
     1681 cagaagtttg gccaaggaat gcttcacgcg gcgccccgaa aattggagga caatcctacc
     1741 ggcgcaaagg tgtggggagg cttaaggacc ggacgtcgtg cgccgatccg cgaaaaacag
     1801 cgttaatcaa aggtaaatca gctcacggtg gcagcagccg tgcctccagc ccggtggcgt
     1861 cgttcagcac cgccgccgtg gccgaggcgt tcaccgtcac gtcataacgc cccgccggca
     1921 cctgccagcg ttgccttggc gtggaccagt cggccagcag gcgcggatcg gtgtccaccg
     1981 tgaccttgga gctggcgccg ggtgccagct ccacattgcc ccagccgatc aggcgctggc
     2041 ccttggtctt gccgcgcgcg gtgacataga cctgcggcgt gtcgcgcccc tggcggttgc
     2101 cggtgttggt gaccgtgaag ctggcatgga tggtgttgcc ctcgctgcgc agtttcagat
     2161 cgtcatagcg gaagctggtg taggacaggc caaagccgaa ggggaacagc ggcgtcagcc
     2221 ccttgcggtc gtaccagcga tagcccacgt ccgaaccttc gatatcgtaa ttcacatgcg
     2281 ttctgccgtc gaagtcgaac agtccgtcca gcttgggacg cggcgtctgc tccagtgagg
     2341 ccgggaaagt gatgggcagg cggccgctgg gattgacgtc gccgaacaat atgtcggcga
     2401 tggcgtctgc gcccttgatg ccgggatacc aggcctccag caccgccgca gtcttgtcca
     2461 gccaaggcat cagcacgggg ccgccggttt ccaacaccac gatggtgcgg ggattggccg
     2521 ccgtcaccgc cgcgatcaag gcgtcttgcg cctccggcag gctgagatcg ggcacgtccc
     2581 gtgcttcggt ggtccattgg gtgacgaaga cgatggcgac atcggcgccc ttggcgcggg
     2641 cggcggcgaa ggcgggatag gcgccggtgt caaacgtgac ttgcgcaccg ggcgcgcgcg
     2701 ccgcaatcgc ccgcaccggc gagccgggat gcaggaccac agcctgccag tcgtcgccgg
     2761 caaaggtggt gggaacgacc aaggccgggc ccgattgcgg cgccacctgg ga
//
LOCUS       DATMDK010000312         6599 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1287336,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000312 DATMDK010000000
VERSION     DATMDK010000312.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 6599)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6599)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6599
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1287336"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..566)
                     /locus_tag="VNN98_06025"
     CDS             complement(<1..566)
                     /locus_tag="VNN98_06025"
                     /inference="COORDINATES: protein motif:HMM:NF020037.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain-containing protein"
                     /protein_id="HWM61689.1"
                     /translation="MRAFDWASTPLGPPEAWPRTLRTCLRIMLASRQPMWVWWGPELI
                     NFYNDAYLPIIGDKHPAALGRRAHKVWAEIWDQIQERVAAAMAGESSYAEAEMMLMRR
                     GGYPEESYYTFSFSPVPEEDGSIGGIVCANSEDTDRVIGARRLALLREIASRTWEADT
                     VEDVYALAARALASDPRDMPFALIYRFE"
     gene            822..2018
                     /gene="egtB"
                     /locus_tag="VNN98_06030"
     CDS             822..2018
                     /gene="egtB"
                     /locus_tag="VNN98_06030"
                     /inference="COORDINATES: protein motif:HMM:TIGR03440.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0052699 - ergothioneine biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ergothioneine biosynthesis protein EgtB"
                     /protein_id="HWM61690.1"
                     /translation="MKAAVLPSHTLAQAYRAVRAYTEALAEPLSAEDCAIQSMPDASP
                     VKWHLAHTSWFFETVILSRRPGYKPFDPRFAFLFNSYYEALGPRHPRPRRGLLTRPGL
                     DEIIAWRAHVDAAMMEACAQDDLRDLILLGLNHEQQHQELILTDIKHAFFCNPLLPAY
                     RAEVPAPRLSQKLEWREHPGGVVAIGHDGADFAFDNESPRHQVLLRPFRIAARAVSNG
                     EYQAFIADGGYRRPEFWLSDGWARVSDENWETPLYWLKDDDGSAKENSFVFTLSGAQP
                     LDPHAPVEHVSFYEAAAYAAWAGARLPTEFEWEASATADACGPRFDHGEVWEWTRSSY
                     DPYPGFQAFEGVAAEYNGKFMVGQMVLRGGSTATPPGHMRATYRNFFPPQARWQFSGI
                     RLAKDI"
     gene            2018..2992
                     /gene="egtD"
                     /locus_tag="VNN98_06035"
     CDS             2018..2992
                     /gene="egtD"
                     /locus_tag="VNN98_06035"
                     /EC_number="2.1.1.44"
                     /inference="COORDINATES: protein motif:HMM:NF021530.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030745 - dimethylhistidine
                     N-methyltransferase activity [Evidence IEA];
                     GO_process: GO:0052699 - ergothioneine biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L-histidine N(alpha)-methyltransferase"
                     /protein_id="HWM61691.1"
                     /translation="MDTNLARLQSVTPPDSGSFADTMLNGLAKTPKEIACKYFYDEAG
                     SRLFDAICELPEYYQTRTETALLTRHASEIAALMGRDVEILEFGAGSLRKVRILLDAA
                     QNPYAYTPLDISGDYLREVVRALAADYPALVLRPVVGDFTGALEIPDLPGRNAKISRR
                     AGFFPGSTIGNFKPDAAMALLRQMRASLNGGGLLIGVDLVKDPVRLHAAYNDTAGVTA
                     LFNKNLLARANRELGADFDSDAFAHYAPYNASAHRIEMYLVSLKRQSVGLCGQRFDFA
                     AGEPVHTEDSHKYTIETFREMACRAGFNPRAVWTDEERLFSVHWLESR"
     gene            3080..3502
                     /locus_tag="VNN98_06040"
     CDS             3080..3502
                     /locus_tag="VNN98_06040"
                     /inference="COORDINATES: protein motif:HMM:NF019498.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HWM61692.1"
                     /translation="MKTLLIAGFAVLASTAVFAQSGGQMAVPAGPDKQVYDVPAGSKD
                     QEILIQTRDLKDGETVTPHIHHGVEMTEVVTGTFELYVKGQPVKVIHAGESFLVPREV
                     PHDARPAPGSPPVHLAVTLVIDKGTAPRTPVSDVLIPK"
     gene            3528..4448
                     /locus_tag="VNN98_06045"
     CDS             3528..4448
                     /locus_tag="VNN98_06045"
                     /inference="COORDINATES: protein motif:HMM:NF013088.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HWM61693.1"
                     /translation="MWLLFAFSGPLLWAVSTHIDKFLVDKYFRHSDTAVLMVFTALLG
                     VLALPAIWLLQPKVLALPWLATGVMTVSGILYMGAMLFYLRAIQSEEASVVAPLFQAN
                     TLFTFALGLVVLHEIPHWPQLLGAGLVVTGALSLSLDKKLHLGSFKPRLVLLMCGATF
                     VLALSSVVFKFFAVQDEFWSTTFWTFVGEGLFGAGILAVPKYRKQFVHLFRRNPGAVI
                     GVNAANELINLGGGLGVRYATLLAPVGLVSAISATSTFFVFIFGVLLTLFFPRLGRED
                     LSSRNVVQKAAGGLAIMAGVALIEVYGGAR"
     gene            4513..5481
                     /locus_tag="VNN98_06050"
     CDS             4513..5481
                     /locus_tag="VNN98_06050"
                     /inference="COORDINATES: protein motif:HMM:NF012264.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HWM61694.1"
                     /translation="MRKYGIIFVLSGLMLAGAVLAQGTNTPPIWAYPVLPPPSGPAPK
                     PDDTVMKSLPGSKVHFTDAGVSDRFKVPDWFPNQHTPMPDVVAHGRKPDVFACGYCHL
                     PNGQGRPENASLAGQPAAYIIEQVMEMKEGRRKTSQPTMGSIKAMYAIAAAANPDEAK
                     TAAGYFSKLRYKKWIRVVETDKVPKFDISSHNMLVKSKAGGTEPLGMRIAEMPENLDR
                     VELRDPSLGFVAYVPKGSIAKGKKLVASGNGAFPCASCHGDDLKGSGDVPGLAGRSPS
                     GIVRQLYDIQHGTRTGPAVDPMKPEVASMTDENRVDIAAYLASLKP"
     gene            5578..>6599
                     /locus_tag="VNN98_06055"
     CDS             5578..>6599
                     /locus_tag="VNN98_06055"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61695.1"
                     /translation="MRSTRRSFLMGTAMAVGAALSPLKAFAADAFAVGSAITIGAPMD
                     PPEWALLQRELLHAHTAACIQFFRRYFNQASGWLETTVRFGGDDGPDDSIENVNDWPH
                     VYALGGDDVLKQMYEKAYEGHVRQYSDAKTTDVPIARLGMYFKEFPSQFDWQHNGEGL
                     TVFNLMPLGDPYSHLYRERVKRFAGFYMDEDPGAPNYDPKLKLIKSLLNGSRGPMLRK
                     ATALDWTGDPIDVENRFPSLGHGEGGYAGMLKHFEEYTDVVGDHPLNLVATTLPANAY
                     MLTHEQKYKDWVLGYCDAWVQRTKDNNDIVPSNIGLDGKIGGGADGKWYGGCYGWSFS
                     PVVPMTG"
BASE COUNT         1230 a         2118 c         2010 g         1241 t
ORIGIN      
        1 tcctcgaagc ggtagatcag ggcaaagggc atatcgcgcg gatcgctggc cagcgcccgc
       61 gccgccaggg catagacatc ctccaccgtg tcggcttccc aggtgcgcga agcgatttcg
      121 cgcaacaagg ccagacgccg cgccccgatt acccggtcgg tatcctcgct attggcgcag
      181 acaatgccgc cgatgctgcc gtcttcttcg ggaaccggcg aaaaggaaaa ggtgtaatag
      241 ctttcttccg gatacccgcc ccggcgcatc agcatcatct cggcttcggc ataactggac
      301 tcgcccgcca tggcggcggc gacgcgctcc tgaatctggt cccagatttc cgcccacacc
      361 ttgtgcgccc gccggcccag cgcggcgggg tgtttgtcgc cgatgatcgg cagataggcg
      421 tcgttgtaga aattgatcag ctcgggcccc caccacaccc acatgggttg gcgcgaggcc
      481 agcatgatgc gcaggcaggt ccgcaaggtc cgcggccagg cttccggggg ccccagcggc
      541 gtggacgccc aatcgaaagc gcgcatggcc gcgcccatct ccccaccgcc agcaaggaaa
      601 tcaggtgcga caggcacagc tttgtggatt tgcaggttca ttctttgacg ccagcccttg
      661 cagcgatccc tcccggacca catctcaacg ccgtagaatg tgctgagttc caaatcgcac
      721 aattttcagg gacactgctt gggaacctgg accgtatccc gcggttaacg tgattatttg
      781 cattatctgg cggacgcccc ggcccgtcga acggatactt gatgaaagcc gccgttctgc
      841 cttcccacac cctggcccag gcttaccggg cggtgcgcgc ctataccgag gcgctggccg
      901 aacctttgtc tgcggaagac tgcgccatcc agtccatgcc cgacgccagc ccggtgaaat
      961 ggcacttggc ccacaccagc tggttcttcg agacggtgat cctgtcccgg cgacccggct
     1021 ataagccgtt cgatccgcgt ttcgccttcc tgttcaattc ctattacgag gcgctggggc
     1081 cgcggcatcc caggccgcgc cgcggcttgc tgacccgtcc cggcctggat gaaatcatcg
     1141 cctggcgcgc ccatgtcgat gcggcgatga tggaggcctg cgcccaagac gatttgcgcg
     1201 atctcatctt gttgggattg aatcacgaac agcaacacca ggaactgatc ctcaccgaca
     1261 tcaagcacgc cttcttctgc aatccgttgc tgcctgccta tcgcgcggaa gtcccggcgc
     1321 cgcgcctgtc gcagaaactg gaatggcggg aacatcccgg cggcgtggtc gcaatcggcc
     1381 atgacggtgc ggacttcgcc ttcgacaacg aatccccgcg ccatcaggtg ctgctgaggc
     1441 ctttccgcat cgccgcgcgc gccgtcagca acggcgaata ccaggccttt atcgccgatg
     1501 gcggctatcg ccgccccgaa ttctggctgt cggacggctg ggcccgggta agcgacgaaa
     1561 attgggaaac gccgctctat tggctgaagg atgacgacgg cagcgccaag gaaaattcat
     1621 ttgttttcac cttatccggc gcgcagccgc tcgatccgca cgcgccggtc gagcatgtca
     1681 gcttttacga ggccgccgcc tatgccgcct gggcgggtgc gcggctgccc acggaatttg
     1741 aatgggaggc atctgcgaca gcagatgcct gcggcccgcg attcgatcac ggcgaggtgt
     1801 gggaatggac gcgctcgtcc tatgacccct atcccggctt tcaggccttt gaaggcgtcg
     1861 ccgcggaata taacggcaag ttcatggtgg gacagatggt gttgcgcggc ggctcaaccg
     1921 ccacgccgcc gggacatatg cgcgccacct acagaaactt tttcccgccg caggcgcgct
     1981 ggcagttttc gggaattcgt ttggcgaagg acatctgatg gacaccaatc tggcacgcct
     2041 gcagtccgtc accccgccgg actccggcag cttcgccgat acaatgttga acgggcttgc
     2101 caaaacgccc aaggaaatcg cctgcaaata tttctatgac gaagccggtt cgcgcctgtt
     2161 cgacgcgatc tgcgaactgc cggaatatta ccagacccgc accgagacgg cgctgctgac
     2221 gcgtcatgcg tccgaaatcg cggcgctgat gggacgcgac gtggagatat tggaattcgg
     2281 cgccggcagt ttgcgcaaag tgcgcatcct gttggatgcg gcccagaacc cgtacgccta
     2341 tacgccgctg gatatttccg gcgattatct gcgggaggtg gtgcgcgccc tggcggcgga
     2401 ttatcccgcc ctggtgctgc gcccggtggt aggcgatttc accggcgcgc tggagattcc
     2461 cgacctgccg ggccggaacg caaaaatctc ccgccgcgcc ggtttcttcc ccggcagcac
     2521 aatcggcaat ttcaagcccg acgccgccat ggccttgctg cgccagatgc gcgccagcct
     2581 gaatggcggc ggcctgctga tcggggtgga cctggtgaag gacccggtgc ggctgcatgc
     2641 ggcctataac gacacggccg gggtcaccgc cttgttcaac aagaatctgc tggcgcgcgc
     2701 caatcgcgaa ctgggcgcgg atttcgattc tgacgccttc gcccattatg cgccttacaa
     2761 tgcaagcgcc catcgcatcg aaatgtacct ggtcagcctc aagcgccaga gcgtcggcct
     2821 gtgcggccag cggttcgatt tcgcggccgg cgagccggtg cacaccgaag acagtcacaa
     2881 atacaccatc gagaccttcc gcgagatggc ctgccgcgcc ggcttcaatc cccgcgcggt
     2941 ctggaccgac gaggaacggc tgttcagcgt ccactggctg gaatcgcggt agtttttggc
     3001 ggccggtgcg cctcgcgccc gcttgcaagc caccctccaa accgccaagc tgcgccgcaa
     3061 atttggggag tgaatgttca tgaaaacact gttgattgca ggctttgcgg ttctggcctc
     3121 caccgccgtc ttcgcccagt ccggcggaca gatggcggtc ccggcgggtc ccgacaagca
     3181 ggtctatgac gttccggccg gcagcaaaga tcaggagatc ctcatccaga cccgcgatct
     3241 gaaggatggc gagaccgtca ccccgcacat ccatcacggc gtggagatga ccgaagtcgt
     3301 caccggcact ttcgaactgt acgtcaaggg ccagccggtg aaggtcatcc atgccggcga
     3361 aagcttcctg gtaccgcgcg aagtaccgca tgacgcccgc cccgcacccg gcagcccgcc
     3421 ggtacacctg gccgtgaccc tggtgatcga caagggcacc gcgccgcgca cgcccgtcag
     3481 cgacgtgctg attccgaagt agaaaacaca gtaggcccgg aaagagcatg tggttactct
     3541 ttgctttttc cgggccgctg ctgtgggcgg tctccaccca catcgacaaa ttcctggtcg
     3601 acaagtattt ccggcacagc gacaccgccg tgctgatggt gttcaccgct ttgctgggcg
     3661 tgcttgccct gcccgccatc tggctgctgc agcccaaggt gctggcgctg ccttggctgg
     3721 ccaccggcgt gatgacggtg tcaggcatcc tttatatggg cgcgatgctg ttctacctgc
     3781 gcgccatcca gagcgaggaa gcctcggtgg tggcgcccct gttccaggcc aacacactgt
     3841 tcactttcgc gctgggactt gtggtcctgc atgaaatacc gcactggccc cagctcctgg
     3901 gcgccggcct ggtggtaacg ggcgcgctga gcctgtcgct ggacaagaag ctgcacctgg
     3961 gcagcttcaa gccccggctg gtgctgttga tgtgcggcgc cacctttgtg ctggcgctgt
     4021 ccagcgtggt gttcaaattt ttcgccgtac aggacgagtt ctggagcacc accttctgga
     4081 ccttcgtggg cgaaggcctg ttcggcgctg gcatcctggc ggtgccgaaa taccgcaagc
     4141 agttcgtcca cttgtttcgc cgcaatcccg gtgccgtgat cggtgtcaac gccgccaatg
     4201 aactgatcaa tctgggcggc ggattggggg tgcgttacgc cacgctgctg gcgccggtgg
     4261 ggctggtgtc ggcgatctcg gcgacctcga ctttcttcgt tttcatcttc ggcgtgcttt
     4321 tgaccctgtt tttccccagg ctgggacgcg aggatctgtc gtcgcgaaac gtcgtacaaa
     4381 aggcggccgg aggattggcg atcatggccg gggtggccct gatcgaagtg tatggcggcg
     4441 cgcgctgaaa ccacttgccc gttgcgtcca gacatgtgtc actggcgcca taaaaagaag
     4501 ctggggaacc gcatgcggaa atacggaatt atctttgtct tgtcggggct tatgctggca
     4561 ggcgcggtcc tcgcgcaagg gacgaatacc ccgccgatct gggcctatcc cgtgctgcct
     4621 ccgccctccg gccccgcgcc caagcccgac gacacggtga tgaagtcgct gcccggctcc
     4681 aaggttcact tcaccgatgc aggggtcagc gaccgtttca aagtgccgga ctggttcccg
     4741 aaccaacata cgcccatgcc cgatgtggtc gctcatggcc gcaagcccga tgttttcgct
     4801 tgcggctatt gccacctgcc caacggccag ggccgtcctg aaaatgcctc gctggccgga
     4861 cagcccgccg cctacatcat cgagcaggtg atggaaatga aggaaggccg ccgcaagacc
     4921 tcgcagccga ccatgggttc gatcaaagcc atgtatgcca tcgcggcggc cgcgaacccc
     4981 gacgaagcaa agaccgccgc cggatacttc tccaagctcc gctacaagaa atggatccgg
     5041 gtggtggaaa ccgacaaggt gcccaagttc gacatctcca gccacaatat gctggtcaag
     5101 tcgaaagccg gcggcactga gccactcggc atgcgcatcg ccgagatgcc ggaaaatctg
     5161 gacagagtcg aattgcgcga tcccagcctg ggctttgtcg cctatgtgcc caagggcagc
     5221 atcgccaaag gcaagaagct ggtggccagc ggcaacggcg cctttccctg cgcctcctgt
     5281 catggcgacg atctcaaagg cagcggcgat gtgccgggac tggcgggacg ttcacccagc
     5341 ggcatcgtgc gccagcttta cgacatccag cacggcaccc gcaccggccc ggctgtggat
     5401 ccgatgaaac cggaagtcgc cagcatgacg gacgagaacc gcgtcgacat cgccgcctat
     5461 ctcgcctccc tcaagccgtg atgcgtggtg cgcatcgatc catagcgcaa ttgactgggc
     5521 gggtccgcgc gaacggacct taggatcgcc ggcaaaactt ctttcggaga agcgttcatg
     5581 cgcagcacgc gccgttcatt cctgatgggc actgccatgg cggtgggggc ggcgctgtcg
     5641 ccgctgaagg cgtttgccgc agacgctttt gcagtgggca gcgcgatcac catcggcgcg
     5701 ccgatggatc cgccggaatg ggcgctgctg cagcgcgaac tgctgcatgc ccacaccgcc
     5761 gcctgcatcc agttcttccg ccgctatttc aaccaggcca gcggctggct ggaaaccacc
     5821 gtgcgctttg gcggcgatga cggtcccgac gactccatcg agaatgtcaa cgactggccg
     5881 catgtctatg ccctgggcgg cgatgatgtg cttaagcaga tgtacgaaaa ggcctatgaa
     5941 ggccatgtcc gccagtacag cgacgccaag accacagacg ttccgatcgc gcgccttggc
     6001 atgtacttta aggaattccc cagccagttc gactggcagc acaatggcga agggctgaca
     6061 gtgttcaacc tgatgccgct gggcgatccc tacagccatc tctatcgcga aagggtgaag
     6121 cgcttcgccg gcttctatat ggacgaagat cccggcgcgc ccaattacga tcccaagctg
     6181 aagttgatca agagcctgct gaacggcagc cgcggcccga tgctgcgcaa ggccacggcg
     6241 ctcgactgga ccggcgatcc catcgatgtc gagaatcgct ttccgtcact gggccatggc
     6301 gaaggcggct atgcggggat gctgaagcat ttcgaggaat ataccgatgt ggtgggcgac
     6361 caccccctca acctggtcgc caccaccttg ccggccaacg cctacatgct gacccatgag
     6421 cagaaatata aggactgggt gctgggctat tgcgacgcat gggtccagcg caccaaggac
     6481 aataacgaca ttgtcccttc caatatcgga ctggacggca agatcggcgg cggcgcggac
     6541 ggcaaatggt atggcggctg ttatggctgg agcttttcgc cggtggtgcc gatgacagg
//
LOCUS       DATMDK010000313         2117 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2887073,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000313 DATMDK010000000
VERSION     DATMDK010000313.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2117)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2117)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2117
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2887073"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..463
                     /locus_tag="VNN98_06060"
     CDS             <1..463
                     /locus_tag="VNN98_06060"
                     /inference="COORDINATES: protein motif:HMM:NF014409.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61696.1"
                     /translation="AHDVVVNLQGDLPALNPEQLKTVVGCLAKSGADIATLAAPIDND
                     EDKNNPAVVKAIVAWDARERLGRALYFTRSTAPGGEGTLYHHVGLYAYRREALESFVA
                     LPPSSLEKREKLEQLRALEAGISIAVARVDAAPLSVDTPADLEKARMLLSA"
     gene            460..1317
                     /locus_tag="VNN98_06065"
     CDS             460..1317
                     /locus_tag="VNN98_06065"
                     /EC_number="4.2.1.51"
                     /inference="COORDINATES: protein motif:HMM:NF008866.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004664 - prephenate dehydratase activity
                     [Evidence IEA];
                     GO_process: GO:0009094 - L-phenylalanine biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prephenate dehydratase"
                     /protein_id="HWM61697.1"
                     /translation="MIKAITSAKRVAFQGEAGAYANLAAREAIPHATAIPKPTFEDAI
                     EAAKTGDTDLVIIPVENSLIGRIADIHHLLPDSGLHIVGEHFMPIRHQLLGLKNARLE
                     DITSVYSQAPALAQCRAILRERKLVAHNWYDTAGSAKHVAELGDKGVAAIASTLAAEF
                     YGLAILKTDVEDEHHNATRFLIMSRDDERAPNQGKVVTSFVFQVKNVPAALYKAMGGF
                     ATNGVNMTKLESYQMGGSFNATQFYADIQGHPDQPHVARALEELAFHTARHTIMGVYP
                     AHPFREDMP"
     gene            complement(1507..>2117)
                     /gene="nudC"
                     /locus_tag="VNN98_06070"
     CDS             complement(1507..>2117)
                     /gene="nudC"
                     /locus_tag="VNN98_06070"
                     /EC_number="3.6.1.22"
                     /inference="COORDINATES: protein motif:HMM:NF001299.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000210 - NAD+ diphosphatase activity
                     [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="NAD(+) diphosphatase"
                     /protein_id="HWM61698.1"
                     /translation="EGSFSEMRASAFVLPARDTAIAGQAKALLDWHKRHGFCPNCGTP
                     TGFRDGGYRRLCPQCGAEHFPRTDPVVIMLPVFGNECLVGRSPRFPPQLYSAFAGFVE
                     PGESMEEAARRELREEVNLAVGAVSYHASQPWPFPSSLMLGCYAQAQSRDFQIDGDEI
                     EAARWLTKDEVRARLANSIEDEMKLPATIAIAHYLIRDWASR"
BASE COUNT          410 a          665 c          659 g          383 t
ORIGIN      
        1 cgcgcatgac gtggtggtga atctgcaggg cgatctgccg gccctgaacc cggagcaatt
       61 gaagaccgtg gtgggatgcc tcgccaaatc gggggcggac atcgccacct tggccgcgcc
      121 catcgacaat gacgaggaca agaacaatcc cgcagtggtc aaagcgattg ttgcctggga
      181 tgcgcgcgag cggctgggcc gggcgctgta tttcacgcgc agcaccgcgc ccggcggcga
      241 gggcacgctt tatcatcatg tcgggcttta cgcctaccgc cgcgaggcgc tggaaagctt
      301 tgtcgccttg ccgccttcgt cgctggaaaa gcgcgaaaag ctggagcagt tgcgggcgct
      361 ggaagcgggc atcagcattg cggtggcgcg tgtggacgcg gcgcccctgt ctgtcgatac
      421 tcccgccgat ttggaaaaag cccgcatgtt gttgtccgca tgatcaaagc cattaccagt
      481 gccaaacgcg tcgccttcca gggcgaagca ggggcctatg ccaatctcgc ggcgcgcgaa
      541 gcgatccccc atgccaccgc gattcccaag ccgacctttg aagacgccat cgaggcggcc
      601 aagaccggcg acaccgatct ggtgatcatt ccggtggaga attcgctgat cggccgcatc
      661 gccgacattc atcatctgtt gcccgattcc gggctgcata tcgtgggcga gcatttcatg
      721 cccatccgcc atcagctgct ggggctgaag aatgccaggc tggaagacat caccagtgtc
      781 tacagccagg cgccggccct ggcccagtgc cgcgccattc tgcgggagcg caagctggtg
      841 gcgcacaatt ggtatgacac ggcgggctcg gccaagcatg tcgccgaact gggcgacaag
      901 ggcgtggcgg ccatcgcttc cactctggcg gcggagttct acggcctggc gatcctaaaa
      961 accgatgtcg aggacgagca ccacaatgcc acgcgcttct tgatcatgtc gcgcgacgat
     1021 gagcgtgccc ccaaccaggg caaggtggtg accagctttg tcttccaggt gaagaatgtg
     1081 ccggcggcgc tgtacaaggc gatgggcggc ttcgccacca atggcgtcaa tatgaccaag
     1141 ctggaaagct accagatggg cggctcgttc aatgccaccc aattctatgc cgatattcag
     1201 ggccatcccg accagccgca tgtggcgagg gcgttggaag aactcgcttt ccatacggcg
     1261 cgtcatacga ttatgggcgt gtatccggcg catccgttca gagaagatat gccctagtct
     1321 cctgaaccag aagttcgctc cgataatgtc atccgccgca aatgcggcgg acccaggtga
     1381 caccctgcat cgccggggca tgtgtcaact gggtggcccg caggagttta cactccggcc
     1441 gcgcttcgcg cggaccgggg tgccggccat gacattcttg tttgaatgca accaactttc
     1501 agaacactag cggctggccc aatccctgat caggtagtgc gcgatggcga tggtggcggg
     1561 cagcttcatc tcgtcttcga tgctattcgc cagccgcgcc cgcacttcgt ctttcgtcag
     1621 ccaacgcgcc gcctcgatct catcgccatc gatctggaag tcgcggctct gcgcctgggc
     1681 ataacagccc agcatgagcg atgagggaaa cggccagggc tggctggcgt gataactgac
     1741 cgcgccgacc gccagattga cttcctcccg caattcgcgc cgcgcggctt cttccatgct
     1801 ctcgcccggt tcgacaaaac cggcaaaggc ggaataaagc tgcggcggga aacgcgggct
     1861 gcgccccacc aggcattcat tcccgaatac cggcaacatg atcaccaccg gatcggtgcg
     1921 gggaaaatgc tcggccccgc attgggggca caggcggcga tagccgccgt cgcgaaagcc
     1981 tgtcggcgtt ccgcaattgg ggcagaagcc atgccgcttg tgccagtcca gcagcgcctt
     2041 ggcctggcct gcgatggcgg tgtcgcgcgc cggcagcaca aaagcgctgg cgcgcatttc
     2101 cgaaaaagag ccttcgc
//
LOCUS       DATMDK010000314         3732 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2208425,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000314 DATMDK010000000
VERSION     DATMDK010000314.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3732)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3732)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3732
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2208425"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..357
                     /gene="argB"
                     /locus_tag="VNN98_06075"
     CDS             <1..357
                     /gene="argB"
                     /locus_tag="VNN98_06075"
                     /EC_number="2.7.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005104791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003991 - acetylglutamate kinase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA];
                     GO_process: GO:0042450 - arginine biosynthetic process via
                     ornithine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetylglutamate kinase"
                     /protein_id="HWM61699.1"
                     /translation="VIAPIGVGRKGETFNINADTVAGAVSCALKAERLILLTDVEGVL
                     DQDKKLISKLSVREARGLIADGTISGGMIPKIQTAIDAVEGGVHAAVILDGRIPHVLL
                     LELFTEHGAGTLITAE"
     gene            354..1346
                     /locus_tag="VNN98_06080"
     CDS             354..1346
                     /locus_tag="VNN98_06080"
                     /inference="COORDINATES: protein motif:HMM:NF018037.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1036 domain-containing protein"
                     /protein_id="HWM61700.1"
                     /translation="MRHVLSLGLALAALGLAPVPAHAALNLCNRTSYILYAATAAIQS
                     PRSETEGWTRIVPGECQVARKEPLTAETYLIYARSGVAHSGPARAWGGNYPVCVKDAN
                     FSVTEAVTQPYCTAEDTFPLPFAPLDNRGKSVWTMNFDEQPVMNLTEAQLAGVKRLLA
                     DNGYKIGHIDGKPDKATGAALLDFRGRMRFAADAGNDQLFQALEREARKKIAPAGYTV
                     CNESREPLLLALGQLGAGGPVSRGWWTTQPGACAKAVTTPLTGDTMFLLVQRKNGSTL
                     VGGAQRFCTTAAAFEIRGAENCAGRGFAASGFAATPTKGLSGYVAHIGPAGLNR"
     gene            complement(1587..2861)
                     /locus_tag="VNN98_06085"
     CDS             complement(1587..2861)
                     /locus_tag="VNN98_06085"
                     /inference="COORDINATES: protein motif:HMM:NF021603.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2336 domain-containing protein"
                     /protein_id="HWM61701.1"
                     /translation="MMDRISPFIRLDSKLADKPGLDPRDALDILDTRTAAPGGTTELA
                     GRTDAGPDVLHYLAAHGAAATRKAVAANPAASAVSNRLLADDENEDVRAELAVKIARL
                     MPGLSERESSHIFALTIETLECLARDAAVRVRAILAEEIKSLDCIPHDTILRLARDLD
                     TVVAAPILQYSPLLSDADLIEIIACGQVQQVLTAIAARKPVSQPVSDRLVQSLDVPAV
                     AALLVNPDAKIRKETLDRIVDQAEEISAWHMPLALRADLSARAIRRIAGLVGASILER
                     LAARNDLSDATRIHLNRELRARLAEPVPEAGTVSPADTVAAAKKDGHLDGSFVEQAAQ
                     AGQREIVVLALAQLANVTEQTVKKILTASGPKPIVALVWHTHLSMRVAFKIQTFIMKL
                     PSRDILPARGGIGFPLSKEEMRWHLNFFNIPV"
     gene            2990..3721
                     /locus_tag="VNN98_06090"
     CDS             2990..3721
                     /locus_tag="VNN98_06090"
                     /inference="COORDINATES: protein motif:HMM:TIGR01993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrimidine 5'-nucleotidase"
                     /protein_id="HWM61702.1"
                     /translation="MESARIVENDSSKVDSGADSRPDFRHVKSWIFDLDNTLYRADNG
                     IFAQIEARMTDYVMAFLKLPRDAAYARQKELYRQYGTTLNGLMHEHGAAPDDYLHYVH
                     DIDLSSLGPDAALAAAIEKLPGRSFVFTNGCRNHAARILNRLGMAHLFEDIWDIRTMG
                     FVPKPEAAAYASVVQIGGVACTEAAMFDDIARNLVPARNLGMTTVWLKTDSPWDKHGP
                     LMDVAEGDIDHQTDNLTQFLHSIRI"
BASE COUNT          686 a         1188 c         1194 g          664 t
ORIGIN      
        1 gtgatcgcgc ccatcggcgt gggccgcaag ggcgagacct tcaacatcaa tgccgacacg
       61 gtggcgggcg cggtttcctg tgcgctcaag gccgagcgcc tgatcctgct gaccgatgtg
      121 gaaggcgtgc tggaccagga caagaagctg atctccaaac tgtcggtgcg cgaagcccgc
      181 ggcttgatcg ccgacggcac catctccggc ggcatgatcc ccaagatcca gaccgcgatc
      241 gacgcggtgg aaggcggcgt ccatgccgcc gtcatcctgg acgggcgcat tccccatgtg
      301 ctgctgctcg aacttttcac cgagcatggc gccggcaccc tgatcaccgc cgaatgaggc
      361 atgtgctgtc gttggggctg gcgcttgcgg cgctgggttt ggcgcccgtg ccggcccatg
      421 ccgcgctcaa cctgtgcaat cgcaccagct acattcttta tgccgccacc gccgcgatcc
      481 aaagcccgcg cagcgagacc gaaggctgga cccgcatcgt gccgggcgaa tgccaggtgg
      541 cgcgcaaaga accgctaacg gccgagacct atctgatcta tgcccgttcc ggggtcgccc
      601 attccggccc ggcccgcgcc tggggcggca attatccggt ctgcgtcaag gacgccaatt
      661 tctcggtcac cgaagcggtg acccaaccct attgtaccgc cgaggacact ttcccgctgc
      721 cattcgcgcc gctggacaat cgcggcaaga gcgtatggac gatgaatttc gacgagcagc
      781 cggtcatgaa tttgaccgag gcgcagctgg ccggggtcaa gcgcctgctg gcggacaatg
      841 gctacaaaat cggccacatc gacggcaaac cggacaaagc caccggcgcg gcgctactgg
      901 actttcgggg gcggatgcgc ttcgccgccg atgccggcaa tgaccaattg ttccaggctc
      961 tggagcgcga ggcgcgcaag aagatcgccc ccgccggtta cacggtgtgc aatgaatccc
     1021 gcgagccgct gttattggcg ctgggccagc tcggcgcggg cgggccggta tcgcgcggct
     1081 ggtggacaac gcagccgggc gcctgcgcca aggccgtcac cacaccgctg accggcgaca
     1141 caatgttcct gctggtgcag cgaaaaaacg gcagcacttt ggtaggcggg gcgcaacgat
     1201 tctgcaccac cgccgcagcc ttcgagattc gcggagcgga aaattgcgcc gggcgcggct
     1261 ttgctgcatc cggctttgcc gccacgccga ccaagggcct cagcggttac gtcgcccata
     1321 tcggcccggc cggcttgaac cgctagaggg catcacggag aattttcctc tccccttgag
     1381 ggagaggaag aaaaatcact gggttagcgg cgcgctagcg acgctcaacc cactgatttt
     1441 tcaggtgagg ggtgagtgtg cgccgtgacc cctcacctag caaaatctaa gcacttagct
     1501 ccgcatacgc tccgctaagc gcaagatttt gcgtcctctc cctcaagggg agagggaagg
     1561 atgagcagac ttgatgacca ataactctaa actggaatat tgaagaagtt gagatgccag
     1621 cgcatctctt ccttgctgag cggaaagccg atgccgccgc gggcgggcag gatatcgcgg
     1681 ctcggcagtt tcataatgaa agtctgaatc ttgaaagcga cgcgcatgga cagatgcgtg
     1741 tgccagacca gcgccacgat cggcttgggg ccgctcgcgg tcaggatctt cttcaccgtc
     1801 tgctcggtga cattggccag ctgcgccagg gccagcacca caatctcgcg ctggccggcc
     1861 tgcgccgcct gttccacgaa cgacccgtcg agatggccgt cctttttcgc cgccgccact
     1921 gtatcggcgg gcgaaacggt gcccgcttcc ggcaccggct cggccagccg cgccctaagt
     1981 tcgcggttga ggtgaatgcg ggtggcgtcg gacagatcgt tgcgcgccgc cagccgttcc
     2041 aggatggagg cgcccaccag gccggcgatg cggcggatgg cgcgtgccga aagatccgcg
     2101 cgcagcgcca gcggcatgtg ccaggcgctg atctcctcgg cctggtccac tatccggtcc
     2161 agcgtctcct tgcggatttt cgcgtcggga ttgaccagca gcgccgccac cgccggcacg
     2221 tccagcgact gcaccagccg gtcgctgacc ggctggctga ccggcttgcg ggcggcgatg
     2281 gcggtcagca cctgctgtac ctggccgcaa gcgatgatct cgatcaggtc ggcgtcggac
     2341 agaagcgggg aatattgcaa gatgggcgcc gccaccaccg tgtcgaggtc gcgcgccagc
     2401 cgcaggatgg tgtcatgggg aatgcagtcc aggctcttga tttcctcggc caagatggca
     2461 cgcacgcgca ccgcggcatc ccgcgccagg cattccagag tctcgatggt gagcgcgaag
     2521 atatgcgaac tttcgcgctc cgacaggccg ggcatcagcc gcgcgatttt taccgccagt
     2581 tcggcgcgca cgtcttcatt ttcgtcgtcc gccaagaggc ggttgctgac ggcggaagcc
     2641 gcgggattgg ctgccaccgc cttgcgggtg gcggccgcgc catgggcggc gagataatgc
     2701 agcacatcgg ggccggcatc ggtgcggccc gccagttcgg tggtgccgcc cggcgcggcg
     2761 gtgcgggtgt ctaaaatgtc gagcgcatcg cgcggatcga ggcccggctt gtcggccagc
     2821 tttgagtcga ggcggatgaa gggtgatatc cggtccatca ttttccttaa ctgcgcccgt
     2881 ttccccagcc accattctcc gccacctgct ttaacagccg ctaaagaggc atggtggaca
     2941 cccgttaacg gtgcttgcgc caagccaggg cccgcgccat gttccggcca tggaaagcgc
     3001 gcggatcgtg gaaaatgaca gctccaaggt ggattcgggc gcggattcgc gtcctgattt
     3061 ccggcatgtg aaaagctgga ttttcgacct ggacaatacc ctgtaccgtg ccgacaacgg
     3121 catcttcgcg cagatcgaag cccgcatgac cgactatgtc atggcgtttc tgaagctgcc
     3181 gcgcgatgcg gcctatgccc ggcagaagga gctttatcgc cagtacggca ccaccttgaa
     3241 cgggctgatg cacgagcatg gcgcggcgcc cgacgattat ctgcactatg tccacgacat
     3301 cgacctgtcg agcctggggc cggatgcggc gctggcggcg gcgatcgaaa agctgccggg
     3361 ccgcagcttc gtcttcacca atggctgccg caatcatgcc gcgcgcatcc tgaaccggtt
     3421 gggcatggcg catctgttcg aagatatctg ggacatccgc accatgggct ttgtgcccaa
     3481 gccggaagcc gcagcctatg ccagcgtggt gcaaatcggc ggcgtggcgt gtacagaggc
     3541 cgccatgttc gatgacatcg cccgcaatct ggtcccggcc cgcaacctgg gcatgaccac
     3601 ggtatggcta aagaccgatt caccctggga caagcacggt ccgctgatgg atgtcgccga
     3661 aggggacatt gaccatcaga ccgacaatct cacacagttt ctgcatagca tcaggatttg
     3721 accatgagtg at
//
LOCUS       DATMDK010000315         4827 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2435634,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000315 DATMDK010000000
VERSION     DATMDK010000315.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 4827)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4827)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4827
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2435634"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(150..821)
                     /gene="rpe"
                     /locus_tag="VNN98_06095"
     CDS             complement(150..821)
                     /gene="rpe"
                     /locus_tag="VNN98_06095"
                     /EC_number="5.1.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020044480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004750 - D-ribulose-phosphate 3-epimerase
                     activity [Evidence IEA];
                     GO_process: GO:0006098 - pentose-phosphate shunt [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribulose-phosphate 3-epimerase"
                     /protein_id="HWM61703.1"
                     /translation="MAQPIRIAPSILSADFSKLGAEIEAIEAAGADWIHVDVMDGHFV
                     PNITIGPQVIKALRPHAKKPFDVHLMISPVDPYLEAFADAGADGLTVHPESGPHVHRT
                     LQQIRKLGKKAGVVLNPGTPVDALDNLMDLVDLILIMSVNPGFGGQSFIESQLVKIEA
                     ARKRIDAQKKIDGRDIALEVDGGITPETAKRAIAAGATVLVAGTAVFQGGPSKYAANI
                     AALRG"
     gene            complement(828..2288)
                     /locus_tag="VNN98_06100"
     CDS             complement(828..2288)
                     /locus_tag="VNN98_06100"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61704.1"
                     /translation="MRESKLITRVWTPIQGTGACALGMAILSLMFLSVAIWNGFPLIF
                     YDTGAYVLEGLGHVFLVERAPVYSELLFLAGGAFSFWPIAVLQALMISYLILEVARAE
                     VPGLTLRGLTVIGAALSLLTGIGWYVGQVEPDIFTPAVILGCWLLLFRGCELGRARLC
                     WVIGLTGLAVACHPSHLGLLGGLLIAAALFKLAQARLPRMRSIGGGGGRSTGQVRRPE
                     GVNINLRRGLFGLVAALCLIVTGNFVLTGNLFISRSGSVFLFARLMQDGIVKRLMNDT
                     CPPAGDIDWRLCAYKNRLSTSANAWLWGAGSGFHALGGFTGKEQQEEDSRIIVESLKR
                     YPVMHFKTAVYDSLLQFLEFKTGDGIEPQLTVLESGFKHMIPGQVPAYLEARQQRGLI
                     RFKTLNLIHVPVGAMSVLGLLLLLWHACLRRAWNGATLPALVLLGLIGNAIICGTFSN
                     PHDRYQSRLIWLPSLALLLAVAKDRRALQPVPESGT"
     gene            2434..2856
                     /gene="sdhC"
                     /locus_tag="VNN98_06105"
     CDS             2434..2856
                     /gene="sdhC"
                     /locus_tag="VNN98_06105"
                     /inference="COORDINATES: protein motif:HMM:TIGR02970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045282 - plasma membrane succinate
                     dehydrogenase complex [Evidence IEA];
                     GO_function: GO:0000104 - succinate dehydrogenase activity
                     [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase, cytochrome b556
                     subunit"
                     /protein_id="HWM61705.1"
                     /translation="MAENPQRQAAATRPLSPHLTIYRWPVTMLTSITHRATGMGLSFG
                     AVVLAWWLVSISNGPEGWQSFHAIMDTPLGLLVLFGFAWSLVFHFLNGVRHLAWDLGY
                     GFPKQVAERNSVIILALSLLGALAIFALVWTGYGGYLR"
     gene            2853..3230
                     /gene="sdhD"
                     /locus_tag="VNN98_06110"
     CDS             2853..3230
                     /gene="sdhD"
                     /locus_tag="VNN98_06110"
                     /inference="COORDINATES: protein motif:HMM:TIGR02968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045282 - plasma membrane succinate
                     dehydrogenase complex [Evidence IEA];
                     GO_function: GO:0000104 - succinate dehydrogenase activity
                     [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase, hydrophobic membrane
                     anchor protein"
                     /protein_id="HWM61706.1"
                     /translation="MNSQTPLHKVEGMGPSHSGTGHFWHERVTSVALIPLSLWFLYVM
                     LGLAGTSEVTALQFLAHPLNALLMGAFVVFSLWHAYLGLQVVIDDYIHTVGTKIILML
                     LIRFSVIAVAATCLFAIVRIAAL"
     gene            3254..>4827
                     /gene="sdhA"
                     /locus_tag="VNN98_06115"
     CDS             3254..>4827
                     /gene="sdhA"
                     /locus_tag="VNN98_06115"
                     /inference="COORDINATES: protein motif:HMM:TIGR01816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA];
                     GO_process: GO:0022900 - electron transport chain
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase flavoprotein subunit"
                     /protein_id="HWM61707.1"
                     /translation="MPAYTIVDHTFDVVVVGAGGAGLRATLECASRGLKTACITKVFP
                     TRSHTVAAQGGVAASLGNMGEDNWRWHMYDTVKGSDWLGDQDSIEYLCRNAAEAVYEL
                     EHFGMPFSRTEEGKIYQRAFGGMTANYGQGIVQRTCAAADRTGHAMLHTLYGQCVKHE
                     VNFFIEYFALDLMMEDGACRGVMAWNLDDGTIHRFRAHQVIMATGGYGRVYLSCTGAH
                     TQTGDGNAMVLRAGLPLQDMEFVQFHPTGIFGAGVLITEGVRGEGGYLTNSAGERFME
                     RYAPNAKDLASRDVVSRAMTIEIREGRGVGPGKDHIHLHLSHLDPKIIHERLPGISES
                     ARIFAGVDVTKEPIPVLPTVHYNMGGIPCAYSGEALTLSGGNPDTVVPGLMAVGEAAC
                     VSVHGANRLGSNSLIDLVVFGKAAGMEAAKALEGIGGHQELPKGAGDEALARFDRFRN
                     AKGGTPTAVMRAAMQKAMQEDAAVFRTGDTLTQGQRRIADIYAQRGDIGIADRSLIWN
                     TDLVETLEFDNLIQQAV"
BASE COUNT          891 a         1572 c         1479 g          885 t
ORIGIN      
        1 ggaacacgag atgatcggcg agcgggcctt gcagcaaacg gcggtagaac cagttgctcc
       61 gccaccatat gcgcaagggc gtcgccaggc ggcgcaacac ctcgcggaac atttcgggca
      121 ggagctgcag gtatagctgc gcctgcacgt cagcccctta aagcagcgat gttagcagca
      181 tatttcgacg gcccgccctg aaacacggcc gtgcccgcca ccaatacggt ggcgccggcg
      241 gcaatggcgc gtttcgccgt ctcgggcgtg atgccgccat ccacttccag cgcgatatcg
      301 cgcccatcga tttttttctg ggcatcgatg cgcttgcgcg ctgcctcgat cttgaccagt
      361 tggctttcga tgaagctctg gccgccgaaa ccgggattga cgctcatgat caggatcagg
      421 tccaccaggt ccatcagatt gtccagcgca tccaccggcg ttccgggatt gaggaccacg
      481 cccgcttttt tgcccagctt gcggatctgc tgcagcgtgc gatggacatg cggtccgctt
      541 tcgggatgca cggtcaggcc atcggccccg gcgtcggcga aagcctcgag ataaggatcc
      601 accggcgaaa tcatcagatg gacgtcgaag ggttttttgg catggggccg cagcgccttg
      661 atcacctggg gcccgatggt gatgttgggc acgaagtggc cgtccatcac atcgacatga
      721 atccagtcgg cgcctgccgc ctcgatggcc tcgatttccg cgccgagctt ggaaaagtcg
      781 gcggaaagga tggacggcgc aatgcggatg ggctgggcca tacgggtcta agtgccggat
      841 tctggcacag gctgcaaggc acgccgatcc ttggccaccg ccagcagcag cgccaggctg
      901 ggcagccaga tcagccggga ctggtagcgg tcatgcggat tggaaaaggt gccgcagatg
      961 atggcgttgc cgatcagtcc cagcagcacc agcgccggca gggttgctcc gttccaggca
     1021 cgccgcaggc acgcatgcca gagcagcaac agcagcccca gcacagacat agcgcctacc
     1081 ggcacatgga tcaggttgag cgtcttgaag cggatcaacc cacgctgctg gcgtgcctcc
     1141 agataggcgg ggacctgacc cggaatcatg tgcttgaagc cggattccag caccgtcagt
     1201 tgcggctcta tgccgtcgcc ggttttgaat tccaggaatt gcaacagcga gtcatacacc
     1261 gcggtcttga aatgcatcac cggataacgt ttcaggcttt ccacgatgat gcggctgtct
     1321 tcttcctgct gttccttgcc ggtaaagccg cccaaagcgt gaaagccgct gcccgcgccc
     1381 cacagccagg cattggctga ggtcgacagc cggttcttgt aggcgcaaag ccgccagtcg
     1441 atgtcgcccg ccggcggaca ggtatcgttc atcagccgtt tgacgatgcc gtcctgcatc
     1501 agccgcgcga acagaaagac cgagccggac ctgctgatga aaagatttcc ggtcagcaca
     1561 aaattgcccg tcacgatcaa acatagtgct gcgacgaggc cgaagaggcc tcgtcgcagg
     1621 tttatgttta ccccctccgg ccttcgcacc tgaccggtgc tacggccacc tcccccgccg
     1681 atgctacgca tgcgggggag gcgggcctgt gcaagcttga agagcgccgc cgcgatcagc
     1741 aatccgccca gcaatcccag gtgcgaagga tgacaggcca ccgccaggcc ggtcaggcca
     1801 atcacccagc acagccgcgc cctgcccagc tcgcagccgc gaaacagcag cagccagcaa
     1861 cccaggatca cagcgggggt gaaaatatcg ggctcgacct gcccgacata ccagccgatg
     1921 ccggtcaaaa ggctcaaagc ggcgccgatc accgtcaggc cccgcaaggt caggccgggc
     1981 acctcagcgc gggcgacctc caggatcagg tagctgatca tcagcgcctg caacaccgca
     2041 atgggccaga agctgaaggc gccgcccgcc aggaacagca gttcggaata gaccggggcg
     2101 cgctcgacca ggaagacatg gcccagcccc tccaacacat aggcgccggt gtcgtaaaaa
     2161 atcaggggaa agccgttcca gatcgccacc gacaggaaca tcaggctgag gatcgccatt
     2221 cccagcgcac aggcccccgt gccttgaatc ggcgtccaaa cccttgtgat cagctttgat
     2281 tcgcgcattt tccccgcgcc ggggaatttg ccgtatcgcg ggcccggacg cgaggtattt
     2341 tggctctgtc aaaagcccgc ctgcgcggtt gactggaacc tgcgcgcccc taaactccgc
     2401 ccgttccagt tttgccttcc ggagggggcc ttaatggcgg aaaatccgca aagacaggct
     2461 gcggccacgc gtccactttc gccccatctc accatttatc gctggccggt cacgatgctg
     2521 acctccatca cccaccgggc caccggcatg ggcctgtcct ttggcgcggt ggtgctggcc
     2581 tggtggctgg tttcgatctc caacggaccg gaaggctggc agagcttcca cgccatcatg
     2641 gacacgccgt tgggcctgct ggtgctgttc ggttttgcct ggtcgctggt ctttcatttc
     2701 ctcaacggcg tgcggcacct ggcctgggac ctgggctatg gtttccccaa gcaggtggcc
     2761 gaacgcaaca gcgtgatcat tctggctttg tcgctgctgg gggcgctggc gatcttcgcc
     2821 ctggtctgga ccggctatgg gggatatctg agatgaattc gcagaccccg ctgcacaagg
     2881 tcgagggcat gggcccgtcc cattccggca ccggccattt ctggcatgag cgcgtcacct
     2941 ccgttgcgct gatcccgctg tcgctgtggt ttctctatgt gatgctgggg ctggccggca
     3001 ccagcgaagt caccgccctg caattccttg cccatccgct gaacgcgctt ctgatgggcg
     3061 ccttcgtcgt gttctcgctg tggcacgctt atctggggct gcaggtggtg atcgacgatt
     3121 acatccacac cgtcggcacc aagatcatcc tgatgctgct gatccgtttt tccgttatcg
     3181 ccgtcgccgc gacctgtttg ttcgcgatcg tccgcatcgc cgccttatag gggcatcttc
     3241 aaaggtaccg ttcatgcccg cctacactat cgttgaccac acattcgatg tcgtcgttgt
     3301 cggcgcgggc ggcgcgggct tgcgcgccac tctggaatgc gcctcgcgcg gcctcaagac
     3361 cgcgtgcatc accaaagtct ttcccacccg cagccacacg gtggcggccc agggcggcgt
     3421 cgcggccagc ctcggcaata tgggcgagga caattggcgc tggcacatgt acgacaccgt
     3481 caagggttcg gattggctgg gcgaccagga ttccatcgaa tatctctgcc gcaacgctgc
     3541 cgaggcggtg tacgagctgg agcatttcgg catgcctttc agccgcaccg aggaaggcaa
     3601 gatctatcag cgcgccttcg gcggcatgac cgccaattat ggccagggca tcgtgcagcg
     3661 cacctgcgcc gccgccgacc gcaccggcca tgccatgctg cacacactgt acggccagtg
     3721 cgtcaagcat gaagtcaatt tcttcatcga gtatttcgcc ctcgacctga tgatggagga
     3781 cggcgcctgc cgcggcgtga tggcgtggaa tctcgatgac ggcaccatcc accgcttccg
     3841 cgcccatcag gtcatcatgg ccaccggcgg ctatggccgc gtctatctgt cctgcaccgg
     3901 cgcccatacc cagaccggcg acggcaacgc catggtgctg cgcgccggcc tgccgctgca
     3961 ggacatggag ttcgtgcagt tccatcccac cggcatcttc ggcgccggtg tcttgatcac
     4021 cgagggcgtc cgcggcgaag gcggctatct caccaactcg gccggcgaac gcttcatgga
     4081 gcgctatgcc cccaacgcca aggacctggc gtcgcgcgac gtggtcagcc gcgccatgac
     4141 gattgaaatc cgcgaaggcc gcggcgtcgg ccccggcaag gaccatatcc acctgcatct
     4201 gtcgcacctg gatcccaaga tcattcacga gcgcctgccc ggtatttcgg aaagcgcgcg
     4261 cattttcgcc ggtgtggacg tgaccaagga accaatcccg gtgctgccca cggtgcatta
     4321 caatatgggc ggcattcctt gcgcctatag cggcgaggcc ctgaccttgt ccggcggcaa
     4381 tcccgatacg gtggtgccag ggctgatggc ggtgggcgaa gccgcctgcg tctcggtgca
     4441 cggcgccaac cggctgggct ccaattcgct gatcgacctg gtggtgttcg gcaaggcggc
     4501 cggcatggaa gcggcaaaag cgctggaagg cattggcggc caccaggaac tgcccaaggg
     4561 cgcgggcgat gaggcgctgg cccgtttcga tcgcttccgc aatgccaagg gcggcacgcc
     4621 caccgcggtg atgcgcgccg cgatgcagaa ggcgatgcag gaagacgccg ccgtgttccg
     4681 caccggcgat accctcaccc agggccagcg ccgcatcgcc gacatctatg cccagcgcgg
     4741 cgacatcggc atcgccgatc gttctttgat ctggaatacg gatttggtgg agaccctgga
     4801 gttcgacaat ctgatccagc aggccgt
//
LOCUS       DATMDK010000316         3556 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1289128,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000316 DATMDK010000000
VERSION     DATMDK010000316.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3556)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3556)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3556
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1289128"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..384)
                     /locus_tag="VNN98_06120"
     CDS             complement(<1..384)
                     /locus_tag="VNN98_06120"
                     /inference="COORDINATES: protein motif:HMM:NF012264.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HWM61708.1"
                     /translation="MHRSFPLLSAALLFAALPQLAGAQPAKPALYTADQASAGAAVYS
                     SSCAACHGVQLEGVAAPALKGSAFGEMATAQGLTAAALLDVVTNTMPQSDPGSLKPEE
                     YNAVTAYILQQNGYPTGQTPLSPSAA"
     gene            441..2237
                     /locus_tag="VNN98_06125"
     CDS             441..2237
                     /locus_tag="VNN98_06125"
                     /inference="COORDINATES: protein motif:HMM:NF024816.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HWM61709.1"
                     /translation="MTSKVAPFQGMPDICAMETAFERAFALHQKGRLAEAEPLYLAVL
                     QGTPGDFAAQLLLGVLRGQQGRNPEALELLAAALAIDPDSDLALLNQGNVLAAMGRAK
                     EALASYDRALAAHPGHADLLSARGLLLVSLRRFEDALTDLDAALAIRPQFAQAWNNRG
                     NALQGLKQFAEALDCYDRALALHPDYPQGHNNRANALRRLGRLPDALAATDRALALDP
                     GNAEALNDRGNVLQDMNLLDEAITSYDRALALRPDYLDALNNRGAARAQLMRFDAALG
                     DFKSAIAFQPDAAQAYWSKAIALMRLGDLEQGLRLYEWRKKLPAPIEARNYRQPLWTG
                     SEDITAKTLFLYIEQGLGDTIHFYRYALMARARGARVILSVQDCMVRLLQDAGADIEI
                     LGAADVPQAFDYHAPLISLALAFATTMATIPAPIPYLRAQSGRVKDWAARIGPNEFKI
                     GVCWQGATSIAGRSFPLAALAPISQIENVRLISLQKGVGAEQIAQTGLCVEDLGDDFD
                     AGRDGFLDSAAVMESLDLVITADTALAHLAGALGRPTWLALRYMPDWRWFLGRADSPW
                     YPQMRLFRQPAPGDWTAVGVEMEAQLRAIHLS"
     gene            2651..>3556
                     /locus_tag="VNN98_06130"
     CDS             2651..>3556
                     /locus_tag="VNN98_06130"
                     /inference="COORDINATES: protein motif:HMM:NF019335.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor plug domain-containing
                     protein"
                     /protein_id="HWM61710.1"
                     /translation="MTKTRVRLAGGAAMIALSAGAAMAQEAVEQVVVSSTRLQAAGFD
                     APTPTTVVSAADLQAQAKPSIFEAITQLPALQGSTGEGYNTGSTTTGLIGLQALGLRG
                     LSPLRTLTLLDSQRVVGGNFNGVVDVSEMPQMLIQRVDVVTGGASASWGSDAVAGVIN
                     FVTDKKFEGFKFNAQGGLSTYGDSGNMLFQTAAGTSFAGGRGHFEVAGEYAYNDGLLP
                     RYPVAQQHTAQPNIGGRTIARQSSNSSFASDAATPAGMPRSVYGALAQSTQQAAYGLI
                     TSGPAAFTTFDANGKAQKFDLAGNCT"
BASE COUNT          644 a         1110 c         1122 g          680 t
ORIGIN      
        1 ggccgcgctc ggcgacagtg gcgtctgccc ggtgggatag ccgttctgct gcaggatata
       61 ggcggtgacg gcgttgtatt cctcgggctt cagcgagccg ggatcggatt gcggcatggt
      121 gttggtcacc acgtccaaaa gggcagctgc ggtcaggcct tgcgccgtgg ccatttcacc
      181 gaaagcggag cccttcaagg cgggggcggc gacgccttcc agctgcacgc catggcaggc
      241 ggcgcaggac gacgaataga ccgccgcgcc ggcgctggcc tggtccgcag tatagagtgc
      301 gggcttggcg ggctgggcgc cggcaagctg cggcaaggcg gcgaaaagaa gggcggcgga
      361 aagcaacgga aacgaacggt gcatggcggt tcctggacgg tttgtcttga ggtttgccac
      421 gataacggca agcccccgga ttgaccagca aagttgcgcc gttccagggg atgccggata
      481 tttgcgccat ggaaaccgcc ttcgagcgcg cttttgctct gcatcaaaag ggtcggctgg
      541 cggaggccga gccgctttat cttgcggttc tgcagggtac gcccggcgac ttcgccgccc
      601 aattgctgct gggcgtgttg cgcggccagc aaggccgcaa tcccgaagcg ctggaactgt
      661 tggcggcggc cctggcgatc gatcctgatt ccgacttggc gctgctcaac cagggcaatg
      721 tcctggccgc gatggggcgc gccaaagaag cgctggccag ctatgaccgc gcgttggcgg
      781 cgcatcccgg acatgccgat cttctgagcg cccgcggctt gctgctggtg agcctgcggc
      841 gtttcgaaga cgcgctgacg gacctggatg cagccttggc gatccgtccc caatttgcgc
      901 aagcctggaa caaccggggc aatgccttgc agggcctgaa acagtttgcc gaggcattgg
      961 attgctatga ccgggcactg gcgcttcacc ccgattatcc ccaaggccat aacaaccgcg
     1021 ccaatgcgct gcgccggctg gggcggcttc ccgacgcgct ggccgcgacg gaccgcgctt
     1081 tggcgctgga tcccggcaat gctgaggcac tgaacgaccg cggtaacgtc ctgcaggaca
     1141 tgaacctgct ggacgaggcg atcaccagct atgatcgcgc gctggcgctg cgccccgatt
     1201 atctggacgc gctgaacaat cgcggcgctg cccgggcgca gctgatgcgt ttcgacgcgg
     1261 cgctgggcga tttcaagtcc gccatcgcgt ttcagccgga tgccgcgcag gcttactggt
     1321 ccaaagccat cgccctgatg cgactgggcg atctggagca aggcctgcgg ctttatgagt
     1381 ggcgcaagaa actgccggcg ccgattgaag cgcgcaacta ccgccagccg ctctggacag
     1441 gcagcgagga tatcacggca aagacgctgt ttctttatat agagcagggt ttgggcgaca
     1501 ccatccattt ctatcgctat gccctgatgg cgcgggcgcg cggcgcgcgc gtgatcttgt
     1561 cggtgcagga ttgcatggtg cgcctgctgc aggatgccgg tgcggacatc gaaattctcg
     1621 gcgctgcgga tgtgccgcaa gccttcgact atcacgcgcc gctgataagc ctggccttgg
     1681 ccttcgccac gaccatggcg actatccccg cacccatccc ctatctgcgg gcacagtccg
     1741 gacgcgtgaa agattgggcg gcgcgtatcg gcccgaacga attcaagatc ggcgtctgct
     1801 ggcagggcgc caccagcatt gcgggacgct catttccgct cgcggctttg gcgccgattt
     1861 cccaaatcga aaatgtccgc ctgatcagcc tgcagaaagg tgtgggcgct gagcaaatcg
     1921 cgcagaccgg tctgtgtgtg gaagatctgg gtgatgattt tgacgcgggg cgcgacggct
     1981 ttctcgacag cgccgcggtg atggagtcgc tggatctggt gatcaccgcc gataccgcgc
     2041 tggcccatct cgccggggcg ctgggccgcc ccacctggct tgcactgcga tacatgccgg
     2101 actggcgatg gttcctgggc agggctgaca gcccctggta tccgcagatg cgtttgtttc
     2161 gccaacccgc gccgggagat tggaccgcgg ttggagtgga gatggaggcg cagctgcgcg
     2221 ccattcatct ttcttaacgc tgctcgcaaa acagaatcac caacgcaaca cgcggatatt
     2281 tttgtgattt tcgtcatcga acagtggcca gttcgcatgt ggcgcccgcg tacttatatt
     2341 attgcgcatc gcgcaattga tcgtgagtga gcacatgcag cataaaagta agccctataa
     2401 atattgattt gaatgagcat cgcgcagttt ttttgaactt atccaaaaac atctattgcg
     2461 atgcacaatt acaggcttga aatttcggcg tggcaataat gtgacgttca gctctttccg
     2521 cgccgacaaa acgtcattcg gccgaatatt cgctcgctag gcggcgcgct cgtctgctat
     2581 ccaacccgcg atgttcggca taaagccgga agaacaaccg tccaggggga ctattgctat
     2641 gaagtatggt ttgacgaaga cacgcgtgcg tctcgcgggc ggtgccgcca tgatcgcgtt
     2701 gagcgccggt gctgcgatgg cgcaggaagc cgtcgagcag gtcgtcgtat cttcgacacg
     2761 cctccaggcc gcgggcttcg atgcccccac ccccaccacg gttgtcagcg ccgctgacct
     2821 gcaagcccag gccaagccca gcatttttga agccattacc cagctgcccg ccctccaggg
     2881 ctccaccggt gaaggctaca ataccggctc caccaccact ggcctgatcg gcctgcaggc
     2941 gctcggcctg cgcggcctgt ctcccttgcg caccctgacc ctgctggaca gccagcgcgt
     3001 cgtgggcggc aatttcaacg gcgtcgtcga cgtcagcgaa atgccgcaga tgctgatcca
     3061 gcgcgttgac gttgtgaccg gcggtgcgtc ggcctcctgg ggttcggacg ccgttgccgg
     3121 tgtcatcaac tttgtcaccg acaagaagtt cgaaggcttc aagttcaacg cgcaaggggg
     3181 tctgtcgacc tatggcgatt ccggtaacat gctgttccag actgctgccg gtacgtcctt
     3241 tgccggcggc cgcggccatt ttgaagtggc gggcgaatat gcctataacg acggcctgct
     3301 gccgcgttat ccggtggccc agcagcacac cgcccagccc aatatcggcg gccgcactat
     3361 cgcccgccag tcgagcaatt ccagcttcgc ctccgatgcc gccaccccgg ccggcatgcc
     3421 gcgcagcgta tacggcgccc tggcgcagag cacccagcaa gcggcttacg gcctgatcac
     3481 cagcggccct gccgccttca ccaccttcga cgccaacggc aaggcccaga aattcgacct
     3541 agccggcaac tgcacc
//
LOCUS       DATMDK010000317         2766 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2888693,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000317 DATMDK010000000
VERSION     DATMDK010000317.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2766)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2766)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2766
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2888693"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..632
                     /locus_tag="VNN98_06135"
     CDS             <1..632
                     /locus_tag="VNN98_06135"
                     /inference="COORDINATES: protein motif:HMM:NF024802.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="glutathione S-transferase family protein"
                     /protein_id="HWM61711.1"
                     /translation="RNWSSWSLRPFVALKATGAPFEVVDIRLRQTDHPTTREQILQHS
                     PTGKVPVLKIEENGGSLTVWDSLAICEIVAERHPQAQLWPDDAATRAIARAYACEMHS
                     GFGDVRDQLTMDFARKQELPELREDTQKQIARIIAAWESALNTYKSEFLFGKLSVADC
                     MYAPVVSRFDTYGVSVSASVRAYMDRVIALPAMREWLEASRKEVEDGIG"
     gene            complement(736..1755)
                     /locus_tag="VNN98_06140"
     CDS             complement(736..1755)
                     /locus_tag="VNN98_06140"
                     /inference="COORDINATES: protein motif:HMM:TIGR02122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TAXI family TRAP transporter solute-binding
                     subunit"
                     /protein_id="HWM61712.1"
                     /translation="MSQRVAALIALLAFVVLVMGALLTGGNLGLADSGPMRISFQIAT
                     GSTEGVYFPVGQAMAGLISHPLGVGRCDTATVCGPAGVILSARTSEGAADNLRSVNSG
                     AVDSGFADGDVIAAAVAGDGAFRRPLRHLRVIAALFSEEAHLVVAAKSNIRSVADLRG
                     KRVLLGTQNSGGLVRTRAILDAYRVRAREITSDQPAAQLLKDGKIDAYFAVAGVPLDS
                     VRDLIARHAARLVPIDGEGRDRLIHMVPQLSSAVIAAGAYPGSGAVETVATRAYWMTR
                     DSEPDPLIYGMTRALFNPANRGLLAASHPSAREIGLDSAAANLPAALHTGAARFYREK
                     GQLPS"
     gene            1927..>2766
                     /locus_tag="VNN98_06145"
     CDS             1927..>2766
                     /locus_tag="VNN98_06145"
                     /inference="COORDINATES: protein motif:HMM:NF025910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HWM61713.1"
                     /translation="MPKATRLSFPLAVLLLGCTAMSSNAGWFDSSAKPEAPVKDNVKD
                     SKDNKAAPLPAVNLDDSIREAQMLRLAGSYPEAIKHLSQLMMVASDDSRVVGEYGKTL
                     AAMGRADDAVNFLTRAQQLQPGDWTIYSALGVAYDQLGNQKDAQPAYERALALKPGEP
                     SVLSNYALSRMLAKDPDMAKRLAARAEIANASAADPKIARNIAMIRSMAPGDAAMAVN
                     NPAPSPVPRMVAAAPQAPAARQTAQFVNLPAPVVAQPRPLALADTANNGVIEARPQVP
                     DNRV"
BASE COUNT          530 a          905 c          885 g          446 t
ORIGIN      
        1 cccgcaactg gtcgagctgg agcctgaggc cgttcgtggc gctgaaagcc accggcgcgc
       61 cgttcgaggt ggtggacatc cgcttgcgcc agaccgacca ccccaccacc cgcgaacaga
      121 tccttcaaca ctctcccacc ggcaaggtgc cggtgctgaa aatcgaagag aatgggggaa
      181 gcctcacagt gtgggacagc ctcgccatct gcgaaattgt cgcggaacgg catccccagg
      241 cgcagttgtg gccagacgat gcagcgacgc gcgcaatcgc gcgggcctat gcctgcgaaa
      301 tgcattccgg ttttggcgat gttcgcgacc agctgacgat ggattttgcc cggaagcaag
      361 aattgcccga gctgcgcgag gatacccaaa aacaaattgc ccgcatcatc gcggcgtggg
      421 aaagcgcact caacacgtac aaaagcgaat tcctgttcgg aaaactgtcg gtagccgact
      481 gcatgtatgc gccggtggtg tcgcgcttcg atacttacgg cgtatcggtg tccgcatccg
      541 tgcgcgccta tatggaccgg gtgatcgcct tgccggcgat gcgcgaatgg ttggaggcat
      601 cgcggaaaga agtcgaagac ggcatcggct aactcggcag ctggcctttt tcgcgataga
      661 agcgcgccgc gccggtatga ggagcgttcg cgcgagcgag agcgaccaat aaaaacggcg
      721 cttcatccgg cgctattagc tcggcagctg gcctttttcg cggtaaaacc gggcggcgcc
      781 ggtatgaagc gcggccggca gattggccgc cgcgctgtcc agtccgatct cgcgcgcact
      841 gggatggctt gccgccagca ggccgcgatt ggccggattg aacaatgccc gcgtcatgcc
      901 atagatcagc ggatcgggtt cgctgtcgcg cgtcatccaa taggcgcggg tcgccaccgt
      961 ctccaccgcg ccgctgccgg gataggcccc cgccgcgata acggcggacg acagttgcgg
     1021 caccatgtgg atcagccggt cgcggccctc gccgtcgatc ggcaccagcc gcgccgcatg
     1081 gcgcgcgatc aggtccctga ccgaatccag cggcacgccg gccacggcga aataggcgtc
     1141 gatcttgccg tccttcagca actgggccgc cggttgatcg gaggtaattt cgcgggcccg
     1201 cacccggtag gcgtcaagga tggcgcgcgt ccgaaccagc ccgccgctgt tctgcgttcc
     1261 cagcagcacg cgtttgcccc gcagatcggc caccgaccgg atattggatt tcgctgccac
     1321 caccaaatgc gcttcttcgg aaaacaaggc ggcaatcacc cgcagatgcc gcagggggcg
     1381 gcggaaggcg ccatcgcccg ccaccgcagc ggcaatcaca tcgccgtcgg cgaagccgga
     1441 atccaccgcg ccgctgttga cgctgcgcag attgtcggcg gcgccttcgc tggtgcgggc
     1501 cgacaggatc acaccggccg ggccgcacac cgtggcggtg tcacagcggc ccacgcccaa
     1561 aggatggctg atcaggcccg ccatggcctg gccgaccggg aaatagacgc cctcggtaga
     1621 gccggtggcg atctggaagg agatgcgcat aggtccggaa tcggccaggc ccagattgcc
     1681 gcccgtcagc agcgcgccca tcaccagcac gacaaaggcg agcaaggcga tcaaggctgc
     1741 aacacgctgg gacatgggct gaaagttaac cctttattgt gtcaggactt gggcattaat
     1801 gggggcatta cctaggcgaa tccggcaccc ttctaccggc acagttctat atgcgccgac
     1861 atacttaagc atttattgac tgggggtctg gcaaggtttc gggagcgttc atcgaaggcg
     1921 tcccccatgc ctaaagcaac ccgtttgtcc tttccgctgg ccgtcctgct gctgggctgc
     1981 accgccatga gcagcaatgc cggatggttc gactccagcg ccaagccgga agcgcccgtg
     2041 aaggacaatg tgaaagacag caaggacaac aaggccgcgc cgctgccggc cgtgaatctg
     2101 gatgacagca tccgcgaggc gcagatgctg cggctggccg gcagctatcc cgaggccatc
     2161 aagcatctgt cgcagttgat gatggtggcg tccgacgatt cccgcgtggt cggcgaatat
     2221 ggcaagaccc tggcggcgat gggccgggca gacgacgccg tgaacttcct cacccgcgcc
     2281 cagcaattgc agccgggcga ctggacgatc tattcggcct tgggcgtggc ctatgaccag
     2341 ctgggcaacc agaaagacgc ccagcccgcc tatgaacgcg ccctggcgct caagccgggc
     2401 gagcccagtg tgctgagcaa ctatgccctg tcgcgcatgc tggccaagga ccccgacatg
     2461 gccaagaggc tggccgcccg cgccgagatt gccaatgcca gtgcggccga tcccaagatc
     2521 gcgcgcaata tcgccatgat ccgttccatg gcgcccgggg acgcagccat ggctgtcaac
     2581 aatcccgcgc cttcgccggt gccgcgcatg gtcgccgctg cgccccaggc gccggctgcg
     2641 cgccagaccg cgcaattcgt caatttgccc gcgccggtgg tggctcagcc gcgcccgctg
     2701 gccctggccg atacggccaa caatggcgtg atcgaggcgc gcccccaggt gccagacaac
     2761 agagtg
//
LOCUS       DATMDK010000318         2046 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2665778,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000318 DATMDK010000000
VERSION     DATMDK010000318.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2046)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2046)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2046
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2665778"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..711
                     /locus_tag="VNN98_06150"
     CDS             <1..711
                     /locus_tag="VNN98_06150"
                     /inference="COORDINATES: protein motif:HMM:NF012981.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016301 - kinase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="diacylglycerol kinase family protein"
                     /protein_id="HWM61714.1"
                     /translation="PAQAAHMVRDALRDGHLEVVAVGGDGTINEALNGFFDSGVAVAP
                     DAVFSFVHSGHDSNLCRRFNIAPGWRAGVTHLGRARIHKRDVGRVACLSEAGEPVTRY
                     FLGAASFGLTGSIARAMGRARIARLFGHGFAGRLHRLAVRLKWRATRVRLMAEGYDEI
                     AGIASVSLAPAGGKFDAAVLDGLNQADRARRLRAARLTAAPTLDTRAPVDVETDGESA
                     GVLPATFEIYPAAINLRL"
     gene            739..>2046
                     /locus_tag="VNN98_06155"
     CDS             739..>2046
                     /locus_tag="VNN98_06155"
                     /inference="COORDINATES: protein motif:HMM:NF014910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HWM61715.1"
                     /translation="MERDQIRWNSGHEDALSEQAWRWLTQALAMPALLATPPRALPGT
                     LPASRLTAGEKFAALLGASGLRQDDLERAHHAAGHGLADLLRLRAGDLSSAPDAVLYP
                     RNEADVLAALKLCAEQNIAVVPCGGGTGDVTPARGGHNAVVALNLSGLNRVTALDAMS
                     GLAEVEAGITGAELARQLAARGMMLRPDTLELSTLGGWIAQPGAAQAAGTSDWLRGLR
                     VATPQGLLASGTHLGPDLKQMMLGSQGAFGVITSATIRICALPTKEEHRSYLFPDFAS
                     GLAAMREAQRLQLPHSLMRLSDDDGTRFSRALQRRGWTLSEHFFDIYLSIRRFDGHAA
                     RLVVGFSGSDSEVRAARKRLDRLAKGLGALAATNGQQRFAARRDSLLDRGIGMDAMTV
                     TASWSELPSLYVKLRAALKQAMRIQVPRPGAHGLVLCQVGPAWP"
BASE COUNT          306 a          665 c          728 g          347 t
ORIGIN      
        1 ccggcccagg ccgcgcatat ggtgcgcgat gccttgcgcg acgggcacct ggaagtcgtg
       61 gcggtgggcg gcgacggcac catcaacgag gcactgaacg gatttttcga ttccggcgtg
      121 gcggtggcgc ccgatgcggt attcagcttc gtgcatagcg gccatgacag taatctgtgc
      181 cgccggttca atatcgcgcc cggctggcgg gcgggcgtga cgcatctggg ccgcgcccgc
      241 atccacaagc gcgatgtcgg ccgcgtcgcc tgtctcagcg aggcgggcga gccggtgaca
      301 cgctatttcc tgggtgccgc cagtttcggg ctgaccggca gcattgcgcg ggcgatgggg
      361 cgggcccgca tcgcgcggct gttcgggcat ggttttgccg gccggctgca ccggctggcg
      421 gtgcggctga aatggcgcgc aacccgggtg cggctgatgg ccgagggcta tgacgaaatc
      481 gcgggcatcg ccagcgtcag cctggcgccg gccggcggca agttcgacgc ggcggtgctg
      541 gacgggctga accaggccga ccgggcccgc aggctgcgcg ccgcccggct gaccgcggcg
      601 ccgaccttgg atacgcgggc gccggtggat gtcgagaccg acggcgaaag cgccggagtg
      661 ctgcccgcca ccttcgaaat ttaccctgcc gcgatcaatc tgcgcctgtg atggcgggct
      721 ttacgctaat ctcccgccat ggagcgcgat cagattcgtt ggaatagcgg gcatgaagat
      781 gctctgagcg aacaggcctg gcgctggctg acgcaggccc ttgccatgcc cgcgctgctg
      841 gcgacaccgc cgcgcgcttt gcccggcacc ttgccggcgt cgcggctgac ggccggcgag
      901 aagtttgccg cgctgctggg cgcttccggc ctgcggcagg atgatctgga gcgcgcccac
      961 catgccgcgg gacacggatt ggcggatctg ctgcggctgc gcgccggtga tctttcctcg
     1021 gcgcctgatg cggtactgta tccgcgcaac gaagccgatg tgctggcggc gctgaaattg
     1081 tgcgccgaac aaaacattgc cgtggtccca tgcggcggcg gcaccggcga cgtcacgccc
     1141 gcgcgaggcg gccataatgc agtcgtcgcc ttgaacctgt cggggctgaa ccgggtcacc
     1201 gccttggacg caatgtcggg cctggccgaa gtcgaagcgg gcattaccgg cgccgaattg
     1261 gcacgccagc tggcggcgcg cggcatgatg ctgcggcccg atacgcttga attgtccact
     1321 ttgggcggct ggatcgcgca gcccggcgca gcacaggctg cgggcacttc cgattggctg
     1381 cggggcctac gggtggcgac accgcaaggc ttactcgcca gcggcacaca tctgggtcca
     1441 gacctgaaac agatgatgct gggatcgcag ggagccttcg gggtcatcac cagcgccacc
     1501 atccgcatct gcgccttgcc gacgaaagaa gagcatcgca gctatctctt tcccgatttc
     1561 gccagcggct tggcggcgat gcgcgaggcc cagcgcctcc aactgccgca cagcctgatg
     1621 cgcctgtcgg acgacgatgg gacgcgtttt tcccgtgccc tacagcggcg cggctggact
     1681 ctcagcgaac attttttcga catctatctc agcatccgcc gcttcgatgg ccatgccgcc
     1741 cggctggtgg tgggtttttc cggcagcgac agcgaggtgc gtgcggcgcg caagcggctc
     1801 gaccgcctgg ccaaggggct cggggcactg gcagcaacca atgggcagca gcgctttgcc
     1861 gcgcggcgcg acagtttgct ggatcgcggt atcggcatgg acgcaatgac agtaacggca
     1921 agctggtcgg aattgccgtc gctctatgtc aagctgcggg cggcgctgaa gcaggcgatg
     1981 cgcattcagg tcccgcgccc cggcgcgcat ggcctggtgc tttgccaggt cggccccgcc
     2041 tggccg
//
LOCUS       DATMDK010000319         4228 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_3365341,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000319 DATMDK010000000
VERSION     DATMDK010000319.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 4228)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4228)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4228
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3365341"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            48..2918
                     /gene="polA"
                     /locus_tag="VNN98_06160"
     CDS             48..2918
                     /gene="polA"
                     /locus_tag="VNN98_06160"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: protein motif:HMM:NF004397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_function: GO:0008408 - 3'-5' exonuclease activity
                     [Evidence IEA];
                     GO_process: GO:0006261 - DNA-templated DNA replication
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase I"
                     /protein_id="HWM61716.1"
                     /translation="MSALKKGDHLYLVDGSGYLFRAYHALPPLTRKSDGLPTGAVAGY
                     CNMLWKLLEDMKGPEQPTHLAVIFDASEKTFRNEIYKEYKAHRPPAPEDLIPQFPLVR
                     DATRAFGISCVEMKGYEADDLIATYARLAREAGARCTIISSDKDLMQLVVDGKVELLD
                     TMKNKRIASAEVLEKFGVGPDKVVQVQALAGDSTDNVPGVRGIGVKTAAELINAYGDI
                     EALLARVNEIKQPKRRETLIENAENARISLRLVTLDINVPYKEKPDEFAVHEPEPKEL
                     IAFLKAMEFGSITRRVAAHFEIEDLEAIAAAPTVANVLPPQPQLPELAAPAEDAALRA
                     PVNHDAYVTVTAAKELDRWIARAREKGLVCVDTETTSLDPMTANLCGVSLGTAPGEAC
                     YIPTGHRRGDGLSFDLSQAQDGGDAITQMREADVLARLKPLLEDDAVLKVGQNLKYDA
                     LVFLQRGIRLGPIDDTMLMSYVLEGGLHGHGMDELSELHLSHTPISFSEVTGKGKDKI
                     TFDCVPVAEATKYSAEDADVTLRLALVLKPKLQEAGKRGVYETLERPLVMVLADMERA
                     GVTIDPDLLRKLSNDFAKQQGALETEIHRLAGGAFNIGSPKQLGEILFDRMKIEGGRK
                     TKTGAWSTDSDVLEDVAAQGHPMAKKVLEWRGLAKLRGTYTDALPTYINAKTGRVHTS
                     YAMASTSTGRLASTDPNLQNIPIRTEEGRRIRQAFIAPKGSKLISADYSQIELRLLAH
                     IADIPELKKAFADNLDIHAMTASEIFGVPIKGMPADVRRKAKAINFGIVYGISGFGLA
                     NQLGIPQSEASDYIKKYFARFPGIRDYMEKTKQFARTHGFVETLFGRRIHIREINSKI
                     PGFRGGAERAAINAPIQGAAADVIRRAMVKLPGALAEAKIKATMLLQVHDELIFEAPD
                     KEVDKASKLIKSVMEKAALPAVEISVPLVVEARAADNWDAAH"
     gene            complement(3061..>4228)
                     /locus_tag="VNN98_06165"
     CDS             complement(3061..>4228)
                     /locus_tag="VNN98_06165"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61717.1"
                     /translation="EPSQFGELARTLGSQGDAAYVFNGALARHLKDAKGWDEKVLMLI
                     TIMESAPSEDAARKLILSSVDAILAEILGGSAALHDLMGAAENLGQALNNLVTLFLGK
                     APKAGNHGRGLVALTQHFAADNLPEARTAIANRIIAEFKSNKRLCPDSMVEELKTLRA
                     MANRIVLGIGKYLSHEDLIAAFTLRSKRLVTQEALGDYIAETGVEEKIDRILFVEDNI
                     IGAENKRQLSTYIVPVLNSATFENHFQNPKTPLLQRLQRLAQLQARVRRSGFIEVTRE
                     EITTKIDAIAVQMEARGKLFESIEARNTSAVEKAQTLLKLATGGILTEGALSAHAREL
                     ILGYLSRPGFLTGYMAAHSEDGDAPDSEKLMAELMETLGKAGITAETGLKSIAA"
BASE COUNT          844 a         1304 c         1302 g          778 t
ORIGIN      
        1 cgctttgtgc ttaaagccgg gcccacttcg aataagactg ctcatcattg agcgctctta
       61 aaaagggcga ccatctctac ctggtggacg gttcgggcta tctgttccgc gcctatcacg
      121 ccctgccgcc gctgacccgc aagtccgacg gcctgcccac cggcgcggtg gcgggctact
      181 gcaacatgct gtggaagctg ctggaggaca tgaagggccc cgaacagccc acccatctgg
      241 cggtgatttt tgacgccagc gaaaagactt tccgcaacga gatttacaaa gaatacaaag
      301 cgcaccgccc gccggcgccc gaagacctga tcccgcaatt tcccctggtg cgcgacgcca
      361 cccgcgcctt cggtatcagt tgcgtcgaaa tgaagggcta tgaggccgat gacctgatcg
      421 ccacctatgc gcggctggcg cgcgaggccg gggcgcgttg caccatcatc tcgtcggaca
      481 aggacctgat gcagctggtg gtggacggca aggtcgagct gctggacacc atgaaaaaca
      541 agcgcatcgc cagcgccgag gtgctggaga aattcggcgt cgggccggac aaggtggtgc
      601 aggtccaggc gctggcgggc gactccaccg acaatgtgcc cggggtgcgc ggcattggcg
      661 tcaagaccgc cgccgaactg atcaatgctt atggcgatat tgaagcgctg ctggccaggg
      721 tgaacgaaat caagcaaccc aagcgccgcg agaccctgat cgagaatgcg gaaaatgccc
      781 gcatctcgct gcggctggtg accttggaca tcaacgtgcc gtacaaggaa aagccggacg
      841 aattcgcggt gcatgagcct gaaccgaagg aactgatcgc tttcctcaag gcgatggaat
      901 tcggctccat cacaaggcgg gtggcggcgc attttgaaat cgaagacctg gaagccattg
      961 ccgccgcgcc gacggtggcc aatgtcctgc cgccccagcc gcaattgccc gaactggcgg
     1021 cgcccgctga agacgcggcc ctgcgcgcgc cggtcaacca cgatgcctat gtcacggtga
     1081 cggcggcgaa ggagctggat cgctggatcg cgcgagcgcg ggaaaaaggc ctggtctgcg
     1141 tcgataccga aaccacctcg ctggacccga tgaccgccaa tctttgcggc gtgtcgctgg
     1201 ggaccgcgcc gggcgaggcc tgttacatcc ccaccggtca tcgcaggggt gacggacttt
     1261 ccttcgatct gtcccaggcc caggacggcg gcgatgccat cacccagatg cgcgaagccg
     1321 atgtgctggc ccggctgaag ccgctgctgg aagacgatgc cgtgctgaag gtagggcaga
     1381 atctgaaata tgacgcgctg gtgttcctgc agcgcggcat tcggctgggt ccgatcgacg
     1441 acaccatgct gatgtcctat gtgctggaag gcgggctgca cggccacggc atggacgagc
     1501 tcagcgagct gcacttgtcg cacaccccca tttcgttcag tgaagtcacc ggcaagggca
     1561 aggacaagat cacgttcgac tgcgtgccgg tggccgaggc gaccaaatat tccgccgagg
     1621 atgccgatgt caccttgcgg ctggcgttgg tcctgaagcc caagctgcag gaagcgggca
     1681 agcgcggcgt ctatgagaca ttggaacggc cgctggtgat ggtgctggcc gatatggagc
     1741 gtgccggggt gacgattgat cccgacctgc tgcgcaagct ctccaacgac ttcgccaagc
     1801 agcagggcgc cctggaaacc gaaatccaca ggctggcggg cggcgccttc aatatcggtt
     1861 cgcccaagca gctgggcgaa atcctgttcg accgcatgaa aatcgaaggc gggcgcaaga
     1921 ccaagactgg cgcctggtcc accgacagcg acgtgctgga agatgtggcg gcccagggcc
     1981 atcccatggc caagaaagtg ctggaatggc ggggcctggc caagctgcgc ggcacctaca
     2041 ccgacgcgct tcccacctac atcaatgcca agaccggccg ggtgcatacg tcttacgcca
     2101 tggcctccac ctcaaccggg cggctggctt ccaccgaccc caatctgcag aacattccaa
     2161 tccgaaccga ggaaggccgc cgcatccgcc aagccttcat cgcccccaaa ggcagcaagc
     2221 tgatcagcgc cgattacagc cagatcgagt tgcgcctgct ggcccatatc gccgacattc
     2281 ccgaactgaa aaaagccttt gccgacaatc tggatattca cgccatgacc gcgtcggaga
     2341 ttttcggcgt gccgatcaag ggcatgcccg ccgatgtgcg ccgcaaggcc aaggcgatca
     2401 atttcggcat cgtctacggc atttccggct tcggcctggc caaccagctg ggcatccccc
     2461 aaagcgaggc cagcgattac atcaaaaagt atttcgcccg cttccccggc atccgcgact
     2521 atatggaaaa gaccaagcag ttcgcccgca cccacggctt tgtcgaaacc ctgttcgggc
     2581 ggcgcatcca tatccgcgaa atcaattcca agattccagg attccgcggt ggggccgaac
     2641 gtgccgccat caacgctccc atccagggag ccgccgccga tgtcatccgc cgcgccatgg
     2701 tcaagctgcc gggtgcgctg gcggaggcga agatcaaggc caccatgctg ctgcaggtgc
     2761 atgacgaact gatcttcgag gcgcccgaca aggaagtcga taaggcgtcc aagctgatca
     2821 agtcggtgat ggagaaggcg gcactgccgg cggtggagat ttcggtgccg ctggtggtgg
     2881 aagcgcgggc tgccgataac tgggatgcgg cacattgaac ctacaacttg tcatggcccg
     2941 cgaatgcggg ccacccagct gggttactcg ctttcctgaa caattgaata tcgactgaaa
     3001 tggagaaacc tattcggtgt cacctgggtg gcccgcattc gcgggccatg acatcaggga
     3061 ttacgcggca atacttttca atcccgtctc ggcggtaatg ccggctttgc ccaaggtttc
     3121 catcagctcg gccatcagtt tttcgctgtc cggcgcatca ccgtcctcgc tgtgcgccgc
     3181 catatagccg gtgaggaagc cgggccgaga cagatagccc aggatcaatt cccgcgcatg
     3241 ggccgacagc gcgccttcgg tgagaatgcc gcctgtggcc agcttgagca gagtctgggc
     3301 cttttccacc gccgaggtgt tgcgcgcttc gatggattca aacagcttgc cacgggcttc
     3361 catctgaacc gcgatggcgt ctatcttggt ggtgatctcc tcgcgggtca cctcgataaa
     3421 gccgctgcgc cgcacccggg cctgcaactg ggccagccgc tgcaatcgtt gcagcagcgg
     3481 tgtcttggga ttctggaaat gattctcgaa cgtcgccgaa ttcagcaccg gtactatata
     3541 ggtggacagc tgacgtttgt tttccgcgcc gatgatattg tcctcgacga acaggatgcg
     3601 gtcgattttt tcttctacgc cggtttcggc gatataatcg cccagcgctt cctgcgtcac
     3661 cagccgcttg gagcgaagcg tgaaggcggc gatcaggtct tcatggctga gatatttgcc
     3721 aatgcccaac acaatgcggt tggccatggc gcgcagggtc ttgagctcct cgaccatgga
     3781 atcggggcac aggcgcttgt tgctcttgaa ctcggcgatg atgcggttgg caatggcggt
     3841 acgcgcctcg ggcagattgt cggcggcgaa gtgctgggtc agggccacca acccgcgtcc
     3901 atggttgccc gctttcggcg ccttgcccag gaacaaggtc accagattgt tcagggcctg
     3961 gccgagattt tccgccgcgc ccatcaggtc gtgcaacgcg gccgagccgc ccaggatttc
     4021 cgccaggatg gcatcgaccg atgacagtat cagtttgcgg gcggcgtctt ccgacggcgc
     4081 gctttccatg atggtgatca gcatcaggac tttttcgtcc cagcccttgg cgtccttaag
     4141 atgacgcgcc agcgcgccgt tgaagacata ggcggcatcg ccctggctgc cgagtgtccg
     4201 cgccagttcg ccgaactggg agggctca
//
LOCUS       DATMDK010000320         2543 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_3125639,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000320 DATMDK010000000
VERSION     DATMDK010000320.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2543)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2543)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2543
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3125639"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            6..1061
                     /gene="lipA"
                     /locus_tag="VNN98_06170"
     CDS             6..1061
                     /gene="lipA"
                     /locus_tag="VNN98_06170"
                     /EC_number="2.8.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017978840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016992 - lipoate synthase activity
                     [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0009107 - lipoate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipoyl synthase"
                     /protein_id="HWM61718.1"
                     /translation="MIPNPQSSRDTALGDFGRAGVYISDMAVVIDTLSNKNPRSAGGR
                     HPEKAHRPDNDIQRKPDWIRVKAPVSREYQATREIVRANKLHTVCEEAACPNIGECWS
                     KRHATMMIMGDTCTRACAFCNVKTGLPGALDAEEPANVARAVATLGLAHVVITSVDRD
                     DLADGGAEHFAQVINAVHATSPGTSVEVLTPDFLRKEGAIETVMAAAPEVFNHNLETV
                     PRLYLHIRPGARYFASLRLLEKAKELRPGGFTKSGLMVGLGESREEIMQVMDDLRAAR
                     VDFLTIGQYLQPTKKHAKLERFWTPEEFAGLESVARAKGFLMVSASPLTRSSYHADSD
                     FAELKAARAAKAPGALA"
     gene            1105..1557
                     /locus_tag="VNN98_06175"
     CDS             1105..1557
                     /locus_tag="VNN98_06175"
                     /inference="COORDINATES: protein motif:HMM:NF022072.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RatA family
                     toxin"
                     /protein_id="HWM61719.1"
                     /translation="MISHRETRVVPCTAALMYAVVADVEKYPEFLPWVVALRVLSRTP
                     ASVTAEMVVGYSGLRERYTSQVTLDPAALRIDAVQIHNGRLGGPFRQLENHWHFMPQG
                     DHCEVEFSILFEFKNPLLHKVAGLAFESVLLKMADAFEARAKALATTP"
     gene            complement(1569..2021)
                     /locus_tag="VNN98_06180"
     CDS             complement(1569..2021)
                     /locus_tag="VNN98_06180"
                     /inference="COORDINATES: protein motif:HMM:NF014517.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CinA family protein"
                     /protein_id="HWM61720.1"
                     /translation="MDAAKAGGVRIATAESCTGGLIAALLTEIPGASDVFGRGFVTYS
                     NKAKEDMLGVPAATLRQHGAVSEPVARIMAEGAIRNSTAQMSVAVTGIAGPGGGTDEK
                     PVGLVHIAVARAGEATLHREYRFGDIGRSAIRLASVGAALEMLEQFVK"
     gene            complement(2060..>2543)
                     /locus_tag="VNN98_06185"
     CDS             complement(2060..>2543)
                     /locus_tag="VNN98_06185"
                     /inference="COORDINATES: protein motif:HMM:NF016489.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="phosphatidylglycerophosphatase A"
                     /protein_id="HWM61721.1"
                     /translation="TVVASVFGIGYFEFAPGTIMSAIAVPLAILIGLRGGGGMGILGA
                     SIIVLVIGILACADHVRETGRTDPPECVIDELAGQWLACSFCLLSFGGLVPPALHISL
                     PSFFLAFVLFRLLDIWKPWPVSWADQKLSGGIGVMTDDAIAGLMAGVLVALARLVFHI
                     "
BASE COUNT          513 a          793 c          812 g          425 t
ORIGIN      
        1 gggatattat tcctaatccg cagagcagcc gtgacactgc gcttggtgat tttggacggg
       61 cgggtgtcta tatctcggac atggctgtgg tcatcgacac gttatccaat aagaatcccc
      121 gctccgcggg ggggaggcac cccgaaaagg cgcatcgccc ggacaacgac atccagcgca
      181 agccggactg gatccgggtc aaggcgccgg tgtcccggga atatcaggcc acccgcgaga
      241 tcgtgcgcgc caataagctg cacacggtgt gcgaggaggc agcctgcccg aacattggcg
      301 agtgctggag caagcgccac gccaccatga tgatcatggg cgacacctgc acccgcgcct
      361 gcgccttctg caacgtaaag accggactgc ccggggcact ggacgccgag gagcccgcca
      421 atgtcgcccg cgcggtggcg accctgggcc tggcccatgt ggtgattacc tcagtggacc
      481 gcgacgacct ggccgatggc ggggcggaac actttgccca ggtgatcaac gccgttcatg
      541 ccaccagccc cggcacctcg gtggaagtgc tgacccccga tttcctgcgc aaggagggcg
      601 ccatcgaaac ggtgatggcg gccgcgccgg aagtgttcaa ccacaatctg gaaaccgtgc
      661 cgcggctgta tctgcacatc cgccccggcg cgcgttattt cgcctcgctg cgcctgttgg
      721 aaaaagccaa ggagctcagg cccggcggct tcaccaagtc gggcttgatg gtgggattgg
      781 gtgaaagccg cgaagagatc atgcaggtga tggacgattt gcgcgccgca cgcgtggatt
      841 tcctcaccat cggccaatat ctgcagccga ccaagaagca cgccaagctt gagagattct
      901 ggacgccgga ggaattcgcc ggcctggaat ccgtcgcccg cgccaaggga tttttgatgg
      961 tctcggcttc accgttgacg cggtcgtcct atcacgccga cagcgatttc gcggagctta
     1021 aggcagcgcg ggctgccaag gccccgggag cgcttgcatg aaaatcggaa cccgattttc
     1081 gggtaagcgc gaccaaaaaa acaaatgatc tcccaccgcg agacccgcgt cgttccgtgt
     1141 accgcggcgc tgatgtatgc ggtggtggcg gatgtggaga aatatcccga attcctgccc
     1201 tgggtggtgg cgctgcgagt cctgtcgcgc acgccggcca gcgtgacggc ggaaatggtg
     1261 gtgggctatt ccggcctgcg cgaacgctat accagccagg tcacgctcga tcctgccgcg
     1321 ctgcggatcg acgcggtgca aattcacaat ggaagacttg ggggcccgtt ccggcagctg
     1381 gaaaatcact ggcacttcat gccgcaaggt gaccattgcg aagtggaatt ttccatcctg
     1441 tttgaattca agaatccgct gctgcacaag gtggcagggc tggcattcga aagcgtgctg
     1501 ctcaagatgg ccgatgcctt cgaggcgcgg gcgaaggcgt tagcgacaac gccgtgactt
     1561 cctgcttgtc atttcacaaa ttgttcaagc atctccagcg ctgccccgac actcgccagg
     1621 cggatggcgc tgcggccgat gtcgccgaag cggtattcgc ggtgcagggt tgcttcgccg
     1681 gcgcgcgcca ccgcgatatg gaccagacca acgggctttt catccgtgcc gccgccgggt
     1741 cccgcgatgc cggtcaccgc gaccgacatt tgcgcggtgg aattgcggat ggcgccttcc
     1801 gccatgatgc gcgcgaccgg ttcggacacc gcgccatgct ggcgcaaggt ggctgccggc
     1861 acgcccagca tgtcttcctt ggccttgttg gaataggtga caaagccgcg cccgaatacg
     1921 tcggatgcgc cgggaatctc agtcagcaga gcggcaatca atccgccggt gcagctttcc
     1981 gccgtagcga tgcgcacgcc accggctttg gccgcatcca acagtgcttc agcccggcca
     2041 agcaggtccg cggaaaacat cagatatgaa agacgaggcg ggccagggcc accaggacac
     2101 ccgccatcag tccggcaatg gcgtcgtcgg tcatcacgcc gatgccgccg ctcagtttct
     2161 ggtcggccca gctcaccggc caaggcttcc agatatcgag cagccggaac aggacaaagg
     2221 ccaagaagaa agagggcaag gaaatgtgca gcgccggcgg gaccaggccg ccgaaggaca
     2281 aaagacagaa ggaacaggcc agccattggc ccgccagctc gtcgatcacg cattccgggg
     2341 gatcggtgcg cccggtttcg cgcacatggt cggcacaggc cagaatgccg atcaccagca
     2401 cgatgatgct ggcgcccaga atgcccatgc cgccgccgcc gcgaagcccg atcaggatgg
     2461 ccagcggcac cgcgatcgcg ctcatgatgg tgccgggagc aaattcgaaa tagccgatgc
     2521 cgaacaccga ggcgacgaca gtg
//
LOCUS       DATMDK010000321         5352 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2438483,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000321 DATMDK010000000
VERSION     DATMDK010000321.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 5352)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5352)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5352
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2438483"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..375
                     /locus_tag="VNN98_06190"
     CDS             <1..375
                     /locus_tag="VNN98_06190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016253239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HlyD family secretion protein"
                     /protein_id="HWM61722.1"
                     /translation="GQPVRLTADLYGTRVMFHGSVAGFGAGTGAAFSLLPAQNATGNW
                     IKIVQRVPVRIALDPAELTDNPLRIGLSVSADVDVSDQSGPRVTSAPATGVMRGNTGE
                     DVSAKVDALVAEILAANGVPAR"
     gene            372..1910
                     /locus_tag="VNN98_06195"
     CDS             372..1910
                     /locus_tag="VNN98_06195"
                     /inference="COORDINATES: protein motif:HMM:TIGR00711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_process: GO:0006855 - xenobiotic transmembrane
                     transport [Evidence IEA];
                     GO_process: GO:0009410 - response to xenobiotic stimulus
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DHA2 family efflux MFS transporter permease
                     subunit"
                     /protein_id="HWM61723.1"
                     /translation="MSAAAETPLKGTALAVTAFALAMGTFMQVLDTTIANVSLPTIAG
                     NLGASTDQSTWIITSFVVANGIGVPITGWLMKRYGVVKVFVLSVLGFTLASLLCGMAW
                     SMESLVFFRTLQGAVSGPIIPGSQALMLSIFPRSKRTTALAIWSITTLVAPICGPLLG
                     GYISDSWNWGWIFLINVPVGLMVALLCWGNLQHRESATSKLPIDTVGLGLLIVWAGAL
                     QVMLDTGKNADWFGSTQIVVLALVSVIGFGAFLLWELTEEHPVVDLSLFRNRNFTLGT
                     IVFCLGNGVFLANMLLIPLWLQTQLGYTATWAGLVSAPTGAVAVLVTPLAARMMSRFD
                     ARWVATIAFAASAASYFMRAGLTADASFMAIALPLMVQGISSGCFFIATISILLDGVP
                     QEKIPAASGLSNFARIVIAGFSVSLVTTFWDRREALHQSRMADLTSSFTPAFNAMLSS
                     LQDLGLSDLAAKAAVTRGMVGQAYLLASVDMFTVSAWLCVAAIVIVWLCHKAQPHEPP
                     PLVD"
     gene            complement(1907..3469)
                     /locus_tag="VNN98_06200"
     CDS             complement(1907..3469)
                     /locus_tag="VNN98_06200"
                     /inference="COORDINATES: protein motif:HMM:NF012711.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HWM61724.1"
                     /translation="MEFRSLVAALPGKRSATYTFERGKAVRHPHVALYDDVVRARESL
                     RAAGVTAGTRVGLYAPNSYPWLVHDLALIELGAIAVPFTDDFNGKINQDLLDTYNVAL
                     LLIAKRDARLFAQKPAHVAFLDADNENIQVLERAPSGEADEADQHSLVFSSGSAGGLK
                     GLVISRKGVEATLPPIFEAIGAGPGDRLQLFLPMSNFQQRNMCYGALWYDFDIIITDY
                     TQLFAAMPALHPTVLIAPPVLYQMMHAEYEKYPGWKKALWAVESTALSLIPSAAVRQG
                     LARVLFKDFYKQFGGRMRVLITGMAPIRRNIGKFFERMQLPLCESYGMVEAGSITFRP
                     ADSKEYGSVGKLLRGINLSFEPDGEIIVNRETPMTLRYFQCAEGENERTFLGPGRVAT
                     GDMGRFDADGNLYLLGRKKELLITAGGVKMHPETIEQDLNNSPDVAHSVIYLKPHAAH
                     LTCVVDLVPPGGEEARARVKKFANSLASAKKAAQFVEVIFADAPFTRDNGMLRPNLKI
                     DRKAIAARYINA"
     gene            complement(3602..4855)
                     /locus_tag="VNN98_06205"
     CDS             complement(3602..4855)
                     /locus_tag="VNN98_06205"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF025054.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HWM61725.1"
                     /translation="MAQSQRKPAQDENLVLEKYGKYRLDELNAARIAKHLVTFQPTEA
                     VVADLMAKARLSVPGLAETSEIERILHYSPDCIMAVTRKTKFDPAAPAGEGLVAFLPL
                     NFLGLQHLALGTFNATSPDVRLLAKPNERPAGIYLWLVYAPGSLAAGIAFFMERLSSD
                     RYAGLNIYTRPATEAGHRYIQALGFTQGMAIGDIEAPPNVWIFARKTQVPLYDSYVPD
                     AGKHVIGVTVVRTFEDMMRVAAIRNAVYVGEQECPYDEEYDGNDMSGTHLLAYMGNEP
                     VGSLRLRFFADFAKIERLAVRKEFRKSQAAFQLVRASFKFCKKKGYGRVYAHSQARLV
                     DFWIRFGFRVMEGGKHFVFSDFDYVEMVADLKPDPGALTLGTDPYVLIRPEGRWHLPG
                     ILEQSASRAASNPSVLKKPNGTFNT"
BASE COUNT          990 a         1599 c         1622 g         1141 t
ORIGIN      
        1 ggtcagccgg tgagactcac cgccgacctc tacggtacgc gcgtgatgtt tcacggctcg
       61 gtcgcgggct tcggcgccgg caccggcgcg gccttctcgc tcctgccggc tcagaatgcg
      121 accggcaact ggatcaagat cgtgcagcgc gtgccggtgc gcatcgcgct tgacccggca
      181 gagctgacgg ataatccgct gcgcattggc ctcagcgtca gcgccgatgt cgatgtcagc
      241 gatcagtccg gtccccgtgt gaccagcgcg ccggccacgg gcgtgatgcg cggcaatacc
      301 ggcgaagatg tcagcgccaa ggtggatgcg ctggtggccg aaatattggc cgccaatggt
      361 gtgccggcgc ggtgagcgcg gcggctgaaa cgcccctaaa gggtaccgcg ctggcggtga
      421 ccgccttcgc cttggcgatg ggcactttca tgcaggtgct ggacaccacc atcgccaatg
      481 tctcgctgcc caccatcgcg ggcaatctgg gcgcgtctac cgatcagtcc acctggatca
      541 tcacctcttt cgtggtcgcc aacggcatcg gcgtaccgat caccggctgg ctgatgaaac
      601 gctatggcgt ggtgaaggtt ttcgtattgt cggtgctggg cttcactctg gcctcgctgc
      661 tctgcggcat ggcctggagc atggagtcgc tggtgttctt ccgcaccctg caaggcgcag
      721 tgtcggggcc gatcattccg ggatctcagg ccctgatgct gtcgattttt ccccgcagca
      781 aacgcaccac ggcgctggcc atctggtcca tcaccaccct ggtggcgccg atctgcggcc
      841 ccctgctggg cggttatatt tccgattcct ggaactgggg ctggatattc ctgatcaatg
      901 tgccggtggg cttgatggtg gcgctgctgt gctggggcaa tttgcagcac cgcgaaagcg
      961 ccaccagcaa gctgcccatc gacacggtcg ggctgggcct actgatcgtg tgggcgggcg
     1021 cgctgcaggt gatgctggac accggcaaga atgccgactg gttcggttcc acccagatcg
     1081 tggtgctggc gctggtatcg gtgatcgggt ttggcgcttt cctgctgtgg gaattgacgg
     1141 aggaacatcc ggtcgtggac ctgtcgctgt tccgcaaccg caatttcacc ctgggcacta
     1201 ttgtcttctg cctgggcaat ggtgtgttcc tggccaatat gctgctgatc ccgttatggc
     1261 tgcagaccca gttgggttac acggctactt gggcgggcct ggtgtcggcg cccaccggtg
     1321 ccgtcgccgt gctggtgaca ccgctggcgg cacgaatgat gtcgcgcttc gatgcccgct
     1381 gggtcgccac catcgctttc gccgcttcgg ccgcgtccta tttcatgcgc gccggcctga
     1441 cggccgatgc cagcttcatg gccattgcct tgccgctgat ggtgcagggg atttcatccg
     1501 gctgtttctt catcgccacc atcagcatct tgctggatgg ggtgccgcag gagaaaatcc
     1561 cggcggcctc gggcctgtcg aacttcgccc gtatcgtcat cgcgggcttt tcggtatcgc
     1621 tggtcaccac cttctgggac cggcgggagg cgctgcatca aagccgcatg gccgatctga
     1681 cctcaagctt cacaccggcc ttcaacgcca tgctctcgtc gctgcaggat ctgggcctgt
     1741 ccgacctggc ggccaaggcg gcggtgaccc gcggcatggt cggtcaggcc tatctgctgg
     1801 cctcggtgga tatgttcacc gtctcggcct ggctgtgcgt tgcggccatc gtcatcgtct
     1861 ggctgtgcca caaggcgcaa ccgcatgaac cgccgccgct tgtcgattaa gcgttgatat
     1921 agcgggccgc gatcgccttg cggtcgatct tcaggttggg ccgcagcatc ccgttgtcgc
     1981 gcgtaaaggg ggcgtcggcg aagatcacct ccacgaactg ggccgccttt ttcgcggaag
     2041 ccaggctgtt ggcaaacttt ttcacccgcg cccgcgcctc ctcgccgcct ggcggcacca
     2101 ggtccaccac acaggtcagg tgcgcggcat ggggcttgag gtaaatgacg gaatgggcca
     2161 cgtcgggact gttgttcaga tcctgttcga tggtctcggg atgcatcttc acaccgcccg
     2221 ccgtgatcag cagttccttc ttgcgcccca gcagataaag attgccgtca gcgtcgaacc
     2281 tgcccatgtc gccggtggcg acccgcccgg gtcccagaaa ggtgcgctca ttttcgcctt
     2341 cggcgcattg aaaatagcgt aaggtcatgg gtgtttcacg gttgacgatg atctcgccgt
     2401 caggctcgaa ggacaggttg atgcccctga gcagctttcc cactgagcca tattccttgg
     2461 aatcggccgg gcggaaggtg atcgagcccg cttccaccat gccataggac tcgcacagcg
     2521 gcagctgcat ccgctcgaaa aatttgccga tgttgcggcg gatcggtgcc atgccggtga
     2581 tcagcacgcg catccggccg ccgaactgct tgtagaagtc cttgaacagg acgcgtgcca
     2641 agccctggcg cacggcggcg gaagggatca gcgacagcgc ggtgctctcc accgcccaca
     2701 gcgccttctt ccagccggga tatttctcat actcggcgtg catcatctga tacagcaccg
     2761 gcggcgcgat cagcaccgtg ggatggagcg ccggcatggc ggcgaacagc tgggtatagt
     2821 cggtgatgat gatatcgaaa tcgtaccaca gcgcgccata gcacatgttg cgctgctgga
     2881 aattcgacat cggcaggaag agttgcagcc tgtctccggg ccccgcgccg atggcttcga
     2941 agatcggggg caaggtggct tcgaccccct tgcggctgat caccagcccc ttgagaccgc
     3001 cggcagaacc ggaggaaaat accaggctgt gctggtcggc ttcgtcagcc tcgcccgagg
     3061 gcgcgcgctc caacacctga atattctcat tgtcggcatc gagaaaggcg acatgggcgg
     3121 gcttttgcgc aaacaggcgg gcgtcccgtt tggcaatcag cagcagcgcg acattataag
     3181 tgtccagcag gtcctggttg atcttgccgt tgaaatcgtc ggtgaagggc actgcgatgg
     3241 cgcccagttc gatcagcgcc aagtcatgca ccagccaggg ataggaattg ggggcataga
     3301 ggccgacgcg ggtccccgcc gtcacccccg cggcgcgtag gctttcgcgg gcgcggacga
     3361 catcgtcata cagggcgacg tgtggatggc ggacggcctt gccgcgctcg aaggtatagg
     3421 tcgcgcttct tttgcccggc agggcagcga ccaggctgcg aaactccatt ccgtccctcg
     3481 atgcatatta tgtatgtcca aggcatttac ggccccgaac gtccccccgg acgtggcggc
     3541 aaactacttt agaggggtag gcttgtcatt aggcaactac aagttcgctg gacaatctac
     3601 ttcacgtatt aaacgtcccg tttggctttt ttaatactga cgggttgctg gctgcacgtg
     3661 aggcggattg ttccagaatg cccggaagat gccagcggcc ttccggccga atcaggacgt
     3721 agggatcggt gcccaaggtc agcgcaccgg gatccggttt caaatccgcg accatttcga
     3781 catagtcgaa atccgaaaac acgaaatgct tgccgccttc catcacgcgg aagccgaaac
     3841 gaatccagaa atcgaccaac cgcgcctggg agtgggcata gacgcgcccg taccctttct
     3901 tcttgcagaa tttgaaactc gcgcgaacca gctgaaacgc tgcctgtgac ttgcgaaact
     3961 ctttgcggac agccagccgt tctatttttg cgaaatcggc gaaaaaacga aggcggaggc
     4021 tgccgaccgg ctcatttccc atataggcga gcaagtgcgt gccggacata tcattgccgt
     4081 catactcctc gtcatagggg cactcctgtt caccgacgta gacggcgttc cggatggcgg
     4141 caacacgcat catgtcctcg aacgtgcgga cgacggtaac gccgattacg tgtttgccgg
     4201 catcgggaac gtaactgtca tacagcggaa cctgtgtttt acgcgcgaaa atccatacgt
     4261 taggcggcgc ctcgatatcc ccgatggcca taccctgcgt gaaaccgaga gcctgaatgt
     4321 aacggtgtcc agcctcggtg gcgggacgcg tgtaaatgtt caagccggca tatcggtcgg
     4381 aagacaatct ttccataaaa aacgcgatac cggccgcaag cgagccgggg gcatacacca
     4441 accacagata aatgcccgcc gggcgttcgt tcggtttggc aaggagcctg acgtcaggtg
     4501 aggtggcatt aaaagtgccc agcgctagat gctgcaggcc gagaaaattc aatggaagga
     4561 atgcgaccag tccttcgccg gcgggcgcgg cgggatcgaa cttggttttg cgtgtcactg
     4621 ccatgatgca gtcggggctg taatgcaaaa tccgctcgat ctcgctggtc tcggcaaggc
     4681 ccggcacact gaggcgtgcc ttggccatca ggtcggcgac aactgcttcg gtcggctgga
     4741 atgtcacaag atgcttggcg atgcgcgctg cattgagctc gtccagcctg tatttgccgt
     4801 atttttccag caccagattt tcatcttggg ctggtttcct ctgtgactgt gccattctga
     4861 ccgccgttgt tcttaataga ttgcaaacca taagagcttc ggctgcggag ttaaatgccg
     4921 attcgaataa gaggttaccg gttgtaggaa aagcccgggc aaatcgtgct tggaatcacc
     4981 cataggtaaa gatccgtagc ggatttttct ggttaattcg ctatttcaac caagctgtgg
     5041 cttcctattg cggcgcagta cattgcaacc cacgcgcgtc acgatacacg cggtgcgctt
     5101 gcgactcgct ccctgatcgt cggcatactt tacgtatttt taccaatgct cctaaggccc
     5161 ataaaacgtt ctgttttacc ggctgtttag cttttccagg caagcttggc gcatgaatgt
     5221 catcgccgtg gccaaagcac ataaccagag agcgattcag cagaattggc accatttctg
     5281 cgacccgacg cttgccttct ccacgccgcg atacgatcag ctcatctcaa tctggcgcac
     5341 taaggctggt ga
//
LOCUS       DATMDK010000322         3095 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_3366601,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000322 DATMDK010000000
VERSION     DATMDK010000322.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3095)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3095)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3095
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3366601"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..224)
                     /locus_tag="VNN98_06210"
     CDS             complement(<1..224)
                     /locus_tag="VNN98_06210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014570681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cold shock domain-containing protein"
                     /protein_id="HWM61726.1"
                     /translation="MAYGNEGPKPISQASAKGKVKWFNATKGYGFITLDNGGDAFCHA
                     SALQATGHSDVPPGTTIVCDLADSQRGLQVV"
     gene            573..1922
                     /locus_tag="VNN98_06215"
     CDS             573..1922
                     /locus_tag="VNN98_06215"
                     /EC_number="3.6.4.-"
                     /inference="COORDINATES: protein motif:HMM:NF012492.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HWM61727.1"
                     /translation="MTDVTFASLGVAEPILRALTAENYTKPTPIQARAIPALLAGRDL
                     LGIAQTGTGKTAAFGIPLLQKLSIGHVPPQAKQAKALILAPTRELAVQIEEALRTYGR
                     FLNLKMTVILGGVNQNTQVRNMSHGVDILVATPGRLLDLVQQKFVRLDAATTLIVDEA
                     DRMLDMGFIRDVRKLVAMLPRERQSMLFSATMPDDVVKLTHDMLRQPERIEVAPQGKT
                     ADRVEQKLYFVPMAQKRQLLSELLKDLAMNRVIVFTRTKHGANKVAEHLARTGVVAEA
                     IHGNKSQNARQRALDLFRSGKARVLVATDIAARGIDIDDISHVVNFELPNEPESYVHR
                     IGRTARAGGAGIAISFCDSSERSYLRDIERIIRMKIEPVAHDLPELTEEQRKQQEDPR
                     RAHGHRHGKPQGHKPSGHKPGGGREGLPHGDPHAPAKRNGSRPHWHRSKDKKRESAA"
     gene            1919..2368
                     /locus_tag="VNN98_06220"
     CDS             1919..2368
                     /locus_tag="VNN98_06220"
                     /inference="COORDINATES: protein motif:HMM:NF001095.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YaiI/YqxD family protein"
                     /protein_id="HWM61728.1"
                     /translation="MTSVFVDGDACPVKAEVEKVAARHGLAVTIVSNGGLRPSANPFL
                     RHVTVAEGADAADDWIVDNIAAGDICITADIPLAARCLDKGARVLGPNGKPFTPEGIG
                     MALGMRELSRHLRELTAGGQTHHAGFGKQDRSRFLGELENCIVALKR"
     gene            2555..>3095
                     /locus_tag="VNN98_06225"
     CDS             2555..>3095
                     /locus_tag="VNN98_06225"
                     /inference="COORDINATES: protein motif:HMM:NF014722.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein adenylyltransferase SelO family protein"
                     /protein_id="HWM61729.1"
                     /translation="MSDFGLRLENHYAQLPDDFYTRMPAEKVGAAPRLIHANPAAAAL
                     VDLDPAVFDDPRFVEVVSGHAPLEGFSPLAMVYSGHQFGVWAGQLGDGRALLIGQVRN
                     AKGELWDIQLKGAGKTPYSRFGDGRAVMRSTIREYLCSEAMAALNIPTSRALAIVATG
                     EGVRRETLEPGAVLTRLAQS"
BASE COUNT          596 a         1012 c          974 g          513 t
ORIGIN      
        1 acgacctgca agccgcgctg gctgtcggcg aggtcgcata cgatcgtcgt gcccggcggc
       61 acgtcgctat gcccggtcgc ctgcaaggcg ctggcgtgac agaaggcgtc gccgccattg
      121 tcgagtgtga tgaaaccgta accttttgtg gcgttgaacc actttacctt gcccttcgca
      181 gaagcctgcg aaatgggctt aggcccttca ttaccgtatg ccatgcgaac cgacgccact
      241 gccccatgcc ggcaagacac cccaagccgc cccccgtccc ggccacgcga gggcaactgc
      301 gacatgatga ctacagaaag ccgcagcccg caacggggtt aatggcacaa atgttagggt
      361 cattattgct gcgccgcagc aaaagcaggt tgactttggg ggcgaacacg ccgataagcc
      421 cgccatccgc tgcgaccgta caaggcgctt attgaagcgc tgccatcgcc ggatcccagc
      481 tttgacctcc gttccctcca gtgtgcgtgg aagacggcaa ccagccgtaa acccgcgccc
      541 tttggcgtgt cccgcggttt ttaaggactt ttgtgactga cgtaactttt gcctcgcttg
      601 gcgtcgccga gccgatcctt cgtgccctca cggccgaaaa ttacaccaaa cccaccccca
      661 tccaggcccg cgccatcccg gcgctgctgg cgggccgcga cctgctgggc atcgcccaga
      721 ccggcaccgg caagaccgcc gccttcggca ttcccctgct gcagaaactc tccatcggcc
      781 atgtcccgcc gcaagccaag caggccaagg cgctgatcct ggctcccacc cgcgaactgg
      841 cggtgcagat cgaggaagcc ttgcggactt acggccgctt tttgaacttg aaaatgacgg
      901 tgatcctggg cggcgtgaac cagaacaccc aggtccgcaa catgtctcac ggcgtggata
      961 tcctggtggc gacaccaggc cgtttgctgg acctggtgca gcagaaattc gtgcggctgg
     1021 acgcggccac gaccctgatc gtggacgaag ccgaccgcat gctggacatg ggcttcatcc
     1081 gcgatgtgcg caagctggtg gcgatgctgc cgcgcgagcg ccagtcgatg ctgttctcgg
     1141 ccaccatgcc ggacgatgtg gtcaagttga cccatgacat gctgcgtcag cctgagcgga
     1201 tcgaagtcgc gccccagggc aagaccgccg acagggtcga gcagaagctg tatttcgtgc
     1261 ccatggcgca gaagcgccag ctgctcagcg agctcttgaa ggacctggcg atgaaccggg
     1321 tgatcgtctt cacccgcacc aagcatggcg ccaacaaggt ggccgaacat ctggcgcgca
     1381 ccggcgtggt ggcggaagcc attcacggca acaagtcaca gaatgcccgc cagcgggcgc
     1441 tggacctgtt ccgcagcggt aaggcccgcg tgctggtggc gaccgacatc gccgcccgcg
     1501 gcatcgacat cgacgatatt tcgcatgtgg tgaatttcga actgcccaac gagccggaaa
     1561 gctatgtcca ccgcatcggc cgcaccgcgc gcgccggcgg cgcgggtatc gcgatcagct
     1621 tctgcgattc gtcggaacgc agctatctgc gcgatatcga gcgaatcatc cgcatgaaga
     1681 tcgaaccggt ggcgcatgac ctgccggaac tgaccgaaga acagcgcaag cagcaggaag
     1741 atccgcgccg cgcccatggc catcgccatg gcaagccgca aggccacaag cccagtggtc
     1801 acaagcccgg cggtggacgc gaaggattgc cccatggcga cccccatgcg ccggccaagc
     1861 gcaatggctc gcggccgcac tggcatcgca gcaaagacaa gaagcgggaa agcgcggctt
     1921 gacatctgtc ttcgttgacg gagatgcctg cccggtaaag gcggaagtcg aaaaggtggc
     1981 ggcccggcac ggcctggccg ttaccatcgt cagcaatggc ggactgcgcc cttcggccaa
     2041 tccattcctg cgccatgtca ccgtggcgga aggggcggat gccgccgacg actggatcgt
     2101 cgataacatc gctgccggcg acatctgcat caccgccgat attccgctgg cagcgcgctg
     2161 tctggacaag ggcgcgcgcg tgctgggccc caacggcaag cccttcacgc cggaaggcat
     2221 cggcatggcg ctggggatgc gcgaactcag ccggcactta cgcgaactca ccgccggggg
     2281 gcaaacccat catgccggat tcggcaaaca ggaccgttcg cggttcctgg gtgaactgga
     2341 aaattgcatc gttgcgctga aacggtgagg cacgacccgc gaagcgggtc aaatcggtcc
     2401 ggtggaccga tttgagtgcc gaacgccgcg agcttgggcg agcggcagca ggaggcgcgg
     2461 ttcgccaaag tcgaacggtc catagcgaca gcgtatggac ggccaaagcg agcggcgggg
     2521 ctgtcggcat cgcaacagag cgttatactg gggcatgtca gatttcggcc ttcgcctcga
     2581 aaatcactac gcccaactgc cggacgattt ctacacgcgc atgcccgccg aaaaggtcgg
     2641 cgccgcgccg cgcctgatcc acgcaaatcc ggctgccgcc gcgctggtgg atctggaccc
     2701 tgcggtgttc gacgatccgc gctttgtcga agtggtgtcc ggccacgcgc cgctggaagg
     2761 tttttcgcct ttggcgatgg tctattccgg ccatcagttt ggcgtctggg ccgggcagct
     2821 cggcgacggc cgcgccttgc tgatcggcca ggtgcgcaac gccaagggcg aattgtggga
     2881 catccaactc aagggcgccg gcaagacgcc ttactcgcgc ttcggcgacg gccgcgccgt
     2941 gatgcgctcc accatccgtg aatatctttg cagcgaggcg atggcggcgc tgaacattcc
     3001 cacctcccgc gccctggcca tcgtagcgac gggcgaaggc gtgcggcgtg agactctgga
     3061 acccggcgcg gtgctaaccc gcctggcgca aagcc
//
LOCUS       DATMDK010000323         5595 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1985094,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000323 DATMDK010000000
VERSION     DATMDK010000323.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 5595)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5595)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5595
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1985094"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            99..746
                     /locus_tag="VNN98_06230"
     CDS             99..746
                     /locus_tag="VNN98_06230"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: protein motif:HMM:NF012387.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA];
                     GO_process: GO:0000413 - protein peptidyl-prolyl
                     isomerization [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HWM61730.1"
                     /translation="MRAVTFAFALLMTAPAWAQDATTQPATTPPPTPQAVTPAPSNPA
                     MTGPRILISTSMGDITLQLDAVRAPKSVADVLRYVKEKHYDNTAFYRVAKGFVIQMGS
                     WDAQGKPRGIHPGPVPLEADNGLSNLRGTVALARADEPDSATAEFFVNLVDNTRLDHK
                     AEDPGNTTGYAVFGQVTSGMDVVDAIGAVPTGDNGPMPGQAPVTPIVVKKVTLLK"
     gene            complement(849..1322)
                     /gene="ptsN"
                     /locus_tag="VNN98_06235"
     CDS             complement(849..1322)
                     /gene="ptsN"
                     /locus_tag="VNN98_06235"
                     /inference="COORDINATES: protein motif:HMM:TIGR01419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008982 -
                     protein-N(PI)-phosphohistidine-sugar phosphotransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA];
                     GO_process: GO:0009401 - phosphoenolpyruvate-dependent
                     sugar phosphotransferase system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PTS IIA-like nitrogen regulatory protein PtsN"
                     /protein_id="HWM61731.1"
                     /translation="MNIADLLAPDAVVPALKAQSKKQLLQELAVRAHGLTRLPERRIF
                     ETLVERERLGTTGVGAGIAIPHGRMAEAKTITGIFARLEHGIDYEAVDSQPVDLVFML
                     LAPENAGADHLKALARVSRLLRDKAVCEKLRAAKTTEALYAILIVDKNGAASSAA"
     gene            complement(1481..3001)
                     /gene="rpoN"
                     /locus_tag="VNN98_06240"
     CDS             complement(1481..3001)
                     /gene="rpoN"
                     /locus_tag="VNN98_06240"
                     /inference="COORDINATES: protein motif:HMM:NF004596.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase factor sigma-54"
                     /protein_id="HWM61732.1"
                     /translation="MAGVGQRLEMRQGQSLVMTPQLQQAIKLLQLSNVELAEYCESEL
                     EKNPLLERDDAAAAISGEGEAPQADTIGERADEALSRDDFSKTADMDEAAHDNMYDGE
                     PRRIAEGPQSGSLTDWTTVKSGNAYEGEDGLESSVAADASLKDHLESQLSIAALLPED
                     RMILLALIDAVDEAGYLRVDLMDVANRLGTDIEDVQAVLGVLQGFDPVGVGARDLSEC
                     LSLQLKAKDRLDPAMEALLTRLDLVARRDMGQLTALCGVDAEDIADMISEIRQLNPKP
                     GLAFGAEPVTPVVPDVFVRVGPDGGWLIELNTDTLPRLLVNNQYYGTVSKGARDKDSK
                     NYLADCLNNANWLVKSLDQRARTILKVASEIVRHQDAFLTHGVRHLRPLNLRIIADAI
                     SMHESTVSRVTSNKYIATPRGLFELKYFFTASIQSMNGAEAHSAEAVRDRIREMIENE
                     EPREILSDDRIVALLTADGVNIARRTVAKYREALRIPSSVERRRLKAGESPQAAYR"
     gene            complement(3008..3805)
                     /gene="lptB"
                     /locus_tag="VNN98_06245"
     CDS             complement(3008..3805)
                     /gene="lptB"
                     /locus_tag="VNN98_06245"
                     /EC_number="7.5.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012322358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009898 - cytoplasmic side of plasma
                     membrane [Evidence IEA];
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0015221 - lipopolysaccharide transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015920 - lipopolysaccharide transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter ATP-binding protein"
                     /protein_id="HWM61733.1"
                     /translation="MTNRSTENLQNDGEIAEEGLRLVEGGRGLVVSRIGKSYNKRPVV
                     RSVSLSLKRGEVVGLLGPNGAGKTTCFYMITGLIAADTGSIEVDGHDITKLPMYRRAR
                     LGIGYLPQEASIFRGLTAEQNIRACAELLEPDGARLEAMVEALLAEFGITHIRNTPAV
                     ALSGGERRRVEIARCLATHPSYILLDEPFAGIDPIAVGEIRDLVHHLKDRGIGVLITD
                     HNVRDALEVIDRAYILHDGRVLKEGTPAEIVSDRDVRRVYLGEKFTL"
     gene            complement(3886..4419)
                     /locus_tag="VNN98_06250"
     CDS             complement(3886..4419)
                     /locus_tag="VNN98_06250"
                     /inference="COORDINATES: protein motif:HMM:NF015901.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LptA/OstA family protein"
                     /protein_id="HWM61734.1"
                     /translation="MKHSLIFLAAFAAGTVLTSGLHAAPAAKPIIGQHDNNAPITINS
                     DSLQADLNAKSITYIGNVVVIQADTKLRANTVKVTTVEGKADKVLASGNVVVDSPKSG
                     IVTGDNGVYSVVPRTVLMTGNVVLKKGKDVMRGAQLTVNLITGQAVLGGGAKTPGASG
                     GRVQGVFIPNAQQAQPQ"
     gene            complement(4416..5072)
                     /gene="lptC"
                     /locus_tag="VNN98_06255"
     CDS             complement(4416..5072)
                     /gene="lptC"
                     /locus_tag="VNN98_06255"
                     /inference="COORDINATES: protein motif:HMM:TIGR04409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015221 - lipopolysaccharide transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015920 - lipopolysaccharide transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter periplasmic protein
                     LptC"
                     /protein_id="HWM61735.1"
                     /translation="MTADKDPTTRGYDWSARVRTTALEALRYSRFVALMKRVLSLGAF
                     LIIAAVLAFFFVQRLPRQLQMSYERLGHIENDLTMVKPRLTGADSKGNPFVITAATAV
                     QDAHNPKKASLTNLEADLAMDKQNWLNARARNGMVDMTSGQLELGGGIDVFTSTGYEL
                     HSKSASANLKQSVIHGHDPVTGQGPDGTLRADEFHADRATSILTLSGHVQMTLLGTKK
                     "
     gene            complement(5075..>5595)
                     /locus_tag="VNN98_06260"
     CDS             complement(5075..>5595)
                     /locus_tag="VNN98_06260"
                     /inference="COORDINATES: protein motif:HMM:NF012780.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HWM61736.1"
                     /translation="APTTSTTMMLSLGDALAVALMERKGFSPDQYRDFHPGGSLGRAL
                     IRVADLMHRAAEIPLTREDASMREVLLVMAERRFGCVGLVDAQGGLSGIITDGDLSRH
                     INGDDFLARKASDIMTRNPKIAEPQQLAAEALAFMNENKITRLFVLEPEDAVRKPVGI
                     LHIHDCLVAGIA"
BASE COUNT          984 a         1725 c         1795 g         1091 t
ORIGIN      
        1 atgacccctc cccgaaattt gctgcgcaaa tttcgaccct ccctcaaggg gagggtgtaa
       61 tatgaggtag gcttagcaag aacccagagg gaatcgttat gcgtgctgta actttcgctt
      121 ttgcgctgct gatgacagcc cctgcttggg cacaagatgc gacgacgcag cctgccacca
      181 cgccaccgcc cacgcctcag gcggtgaccc cggccccctc caatccagcc atgaccggac
      241 cgcggatact gatctccacg tcgatgggcg acatcaccct gcaactggat gcggtgcgcg
      301 cacccaaaag cgtggccgat gtcctgcgct atgtgaagga aaagcattac gacaacaccg
      361 ccttctaccg cgtcgccaaa ggcttcgtga tccagatggg cagctgggac gcccagggca
      421 agccgcgcgg cattcatccc ggcccggtgc cgctggaagc ggataacggc ctgtccaatc
      481 tgcgcggcac ggtggcgctg gctcgggcgg atgaacccga cagcgccacg gccgaattct
      541 tcgtgaacct ggttgacaat acgcgactgg accacaaggc cgaggatccc ggcaacacca
      601 ccggctatgc cgtgttcggc caggtgacat cgggcatgga cgtggtggac gcgatcggcg
      661 ccgtgcccac cggcgacaat gggccgatgc ccggtcaggc gccggtgacg ccgattgtgg
      721 tgaagaaggt cacgttgctc aaatagcagc gcgcaggatt ttgtggcgtg agcaggagcg
      781 ccgagcgacg tgtacaaaga cgtacacgag cgatggcgcg acgaactcac gacgcaaaag
      841 acaagcgctt aggcggctga ggaagcggcg ccgttcttat cgacgatcag aatcgcgtac
      901 agcgcctcgg tggtcttggc ggcgcgcagc ttttcgcaga ccgccttgtc acgcaacagg
      961 cgcgagaccc gcgccagggc cttgagatgg tcggcgccgg cattttccgg ggccagcagc
     1021 atgaacacca ggtccaccgg ctggctgtcc accgcttcgt aatcgatgcc gtgctccagc
     1081 cgcgcgaaga tgccggtgat ggtcttggct tcggccatgc ggccatgcgg gatggcgatt
     1141 ccggcgccga cgccggtggt tcccagccgc tcgcgttcca ccagggtctc gaagatgcgg
     1201 cgttccggca ggcgcgtcag gccgtgggcg cgcaccgcca gttcctgcaa cagctgtttc
     1261 ttggattgcg ctttcaacgc cgggacaacg gcatccggcg cgagcagatc ggcaatattc
     1321 atcaactgtc ccggatatgg tccgcctggt ccgtgcggaa tgatacgtct gtgccccccg
     1381 gtaccggggg cctgctcaaa agcggcgggt tcataggccc gcccttcggc aatgtcaatc
     1441 ttgacttaaa cacaagtaat taaggacgcc gccgggcttt tcagcgatag gcggcctggg
     1501 gactttcccc ggctttcagg cggcggcgtt ccaccgaaga ggggatgcgc agggcctcgc
     1561 gatacttggc cacggtgcgc cgcgcgatgt tcacgccgtc ggcggtgagc agcgccacga
     1621 ttcggtcgtc ggacaggatt tccctgggtt cctcattctc gatcatttcg cggatacggt
     1681 cgcgcaccgc ttcggcgcta tgggcttcgg cgccgttcat cgactggatc gaggcggtga
     1741 agaagtattt cagctcgaac aggccgcgcg gcgtggcgat atatttgttg gaggtgacgc
     1801 ggctgaccgt ggattcatgc atggaaatcg cgtcggcgat gatccgcagg ttcaacgggc
     1861 gcaagtgacg cacgccatgg gtcaggaacg cgtcctggtg gcgcacgatc tcgctggcga
     1921 ccttcaggat ggtgcgggcg cgctggtcca ggctcttgac cagccagttg gcattgttga
     1981 ggcagtcggc gaggtagttc ttgctgtcct tgtcgcgggc gcccttggag acggtgccgt
     2041 aatactggtt gttgaccagc aggcgcggca gggtgtcggt gttgagttcg atcaaccagc
     2101 cgccgtccgg cccaacccgg acaaagacat cgggcaccac cggcgtcacc ggctcggcac
     2161 caaaggcgag tcccggcttg ggattgagct ggcgaatttc ggaaatcatg tcggcaatgt
     2221 cttcggcgtc cacgccgcac aacgccgtga gctggcccat gtcgcggcga gccaccagat
     2281 cgaggcgggt cagcagcgct tccatcgccg gatccagccg gtccttggct ttcagctgca
     2341 ggcttaagca ttcggacagg tcgcgcgcgc cgacgcccac cggatcgaag ccctgcaaca
     2401 cgcccagcac cgcctgcaca tcctcgatat cggtgcccag acggttggcg acgtccatca
     2461 ggtcgacgcg cagatagccg gcttcgtcca ccgcatcgat cagcgccaag aggatcatgc
     2521 gatcttccgg cagcagggcg gcgatggaga gctggctttc cagatgatcc ttcagcgagg
     2581 cgtcggcggc gacggaggat tccagcccgt cctcgccttc ataggcgttg cccgacttca
     2641 ccgtggtcca atcggtcagg gagccggact gcggtccctc ggcgattctg cgcggctcgc
     2701 cgtcatacat gttgtcgtgc gccgcctcat ccatgtcggc ggtctttgag aaatcgtcgc
     2761 gggacagcgc ctcgtcggcg cgttcgccga tggtgtcggc ttggggcgct tcgccttcgc
     2821 cggaaatggc tgcggcagca tcgtcgcgct ccagcagcgg gttcttctcc aactcggatt
     2881 cgcaatattc ggccagctcg acattggaca attgcagcag cttgatggcc tgctgcaatt
     2941 gcggcgtcat gaccagcgac tggccctgac gcatctcaag tctttgacct accccagcca
     3001 taatgcccta cagcgtgaac ttctctccga gatagacgcg ccgcacatcg cggtcgctga
     3061 cgatctcggc cggggtgcct tccttaagca cccgtccgtc atgaagaata taggcgcggt
     3121 cgatcacctc cagcgcgtcg cggacattgt gatcggtgat cagcacgccg atgccgcgat
     3181 ccttgaggtg gtggaccagg tcgcggattt cgcccaccgc gatgggatcg atgccggcaa
     3241 agggttcgtc cagcaggatg taggagggat gcgtcgccag gcagcgtgcg atctcgactc
     3301 tgcggcgttc gccgcccgac agcgccacgg cgggcgtgtt gcggatatgg gtgatgccga
     3361 attcggccag cagcgcttcg accatggctt ccagccgcgc cccatcgggc tccagcagtt
     3421 cggcgcaggc gcggatattc tgttccgcgg tcaggccgcg gaaaatcgaa gcttcctgcg
     3481 gcaggtagcc gatgcccaac cgggcgcggc ggtacatggg cagcttggtg atgtcatggc
     3541 cgtccacttc aatcgagccg gtgtcggcag cgatcaggcc ggtgatcata tagaagcagg
     3601 tggtcttgcc ggcgccattg gggcccagca ggccgaccac ctcgccgcgc tttaacgaaa
     3661 ggctaaccga tcgcaccacg gggcgcttgt tgtagctttt gccgatgcgc gaaaccacga
     3721 ggccccggcc gccttcgacc aggcgcaggc cttcctcggc aatttcgccg tcattctgca
     3781 ggttttctgt gcttctgttt gtcatttcta agggcgctcg tgtcgctggc aaaaaccatg
     3841 cctgtttgtg tttaaggaac catgaaaatt gatttgccca tttccctatt gtggctgggc
     3901 ctgttgcgcg ttcgggatga agacgccctg cactcggccg ccggaagcgc caggcgtctt
     3961 ggcgccgccg cccagcaccg cctggccggt aataaggttc accgtcagct gcgcgccgcg
     4021 catgacgtct ttgccctttt tcagcaccac attgccggtc atcaaaacgg tgcgcggtac
     4081 caccgaatag acgccgttgt cgccggtgac gatgccggat ttgggcgaat ccaccaccac
     4141 attgcccgat gccagcacct tgtcggcctt gccttcgacg gtggtcactt tcaccgtatt
     4201 ggcgcgtagt ttcgtgtcgg cctggatgac gacgacattg ccgatataag tgatggactt
     4261 ggcgttgaga tcggcctgca aactgtccga gttaatggtg atcggcgcgt tgttgtcgtg
     4321 ctggccgatg atcggcttgg ccgccggcgc cgcatgaagg ccggacgtca ggacggtacc
     4381 tgcggcgaag gcggcaagaa aaatcaaact gtgtttcatt tcttggttcc caatagcgtc
     4441 atctgcacat gaccgctgag ggtgagaatg ctggtggcgc ggtcggcgtg gaattcatcg
     4501 gcgcgcaggg tgccgtccgg cccttgcccg gtcaccggat catgaccatg gatcacgctc
     4561 tgcttcaggt tggccgaggc gcttttgcta tgcagctcat agccggtgga agtgaaaaca
     4621 tcgatgccgc cgcccagttc cagctggccg gaggtcatgt ccaccatgcc gttgcgggcg
     4681 cgggcgttga gccaattctg tttgtccatc gccaggtcgg cttccagatt ggtcaggctg
     4741 gctttcttgg ggttgtgggc gtcctgcacc gccgtggcgg cagtgatgac gaagggattg
     4801 cccttgctgt cggcgccggt cagccggggc ttgaccatgg tgaggtcgtt ttcgatatgg
     4861 cccagccgct cataggacat ctgcaactgg cgcggcaggc gctgcacaaa gaagaaggcc
     4921 agcactgcgg cgatgatcag gaaggcgccc agcgacagca cccgcttcat caaggcgacg
     4981 aaccgcgaat agcgcagcgc ctccagcgcg gtggtgcgca cgcgggcgga ccagtcgtaa
     5041 ccgcgcgtag tgggatcttt gtccgctgtc atgctcatgc aattcctgca accagacagt
     5101 catggatgtg caggatgccg accggttttc tgaccgcatc ctcgggttcc agcacgaaca
     5161 ggcgggtgat cttgttttcg ttcatgaagg ccagcgcctc ggccgccagc tgctgcggtt
     5221 cggcgatctt ggggttgcgc gtcatgatgt cggaggcctt gcgggccagg aaatcgtcac
     5281 cgttgatgtg ccgcgacaga tcgccgtcgg tgatgatgcc gctcaggcct ccttgcgcat
     5341 cgaccaggcc gacgcagccg aagcggcgtt cggccatcac cagcagcact tcgcgcatgg
     5401 aggcgtcttc gcgggtcaag gggatttccg cagccctgtg catcaggtcc gccacccgga
     5461 tcaaggcgcg gcccagcgat ccgccaggat ggaagtcgcg atactggtcg ggcgaaaagc
     5521 ccttgcgctc catcagcgcc accgccagcg catcgcccag actcagcatc atggtggtgg
     5581 aggtggtggg cgcca
//
LOCUS       DATMDK010000324         7450 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1747172,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000324 DATMDK010000000
VERSION     DATMDK010000324.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 7450)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7450)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7450
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1747172"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1431)
                     /locus_tag="VNN98_06265"
     CDS             complement(<1..1431)
                     /locus_tag="VNN98_06265"
                     /inference="COORDINATES: protein motif:HMM:NF012398.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HWM61737.1"
                     /translation="MTETLTHFIGGKQISAPGALESTNPSNTNEIIAKFPDGSVEDVN
                     DAVAAARSAFSGWSGSTPEVRADLLDKVGNMIIERKDALGKLLATEEGKTLPEATGET
                     VRAGRIFKYMAGEALRRHGQNLDSVRPGVEIQTYREAVGVYGLITPWNFPIAIPAWKM
                     APALAFGNTVVLKPANPTPATAHALVAILHEAGAPAGTVNLVLGRGVVGDALSKHPDV
                     NGVTFTGSQTVGSKVALAAVSRQARVQLEMGGKNPLVVLDDAEFDRAVQIAVDGGYFA
                     TGQRCTASSRVFVQQGIYDKFIAAVAERAKALKVGNALDPSTQMGPAVTDTQLAGNLN
                     YVDIALKEGGRLLAGGAEPLKLATPGHYMSPTLIVDTKPGDRINQEEVFGPVVSVVKI
                     KDYEEGLALSNAGNFGLSAGIVTTSLKHARHFQRNVKAGMVMINLPTAGVDYHVPFGG
                     SRGSSYGAREQGFAAVEFFTQTKTAYS"
     gene            complement(1535..2707)
                     /locus_tag="VNN98_06270"
     CDS             complement(1535..2707)
                     /locus_tag="VNN98_06270"
                     /inference="COORDINATES: protein motif:HMM:NF013706.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarylacetoacetate hydrolase family protein"
                     /protein_id="HWM61738.1"
                     /translation="MTKSVFPLPQGFMPEDWRDAVLVGRIDMGEGPTPVVVKEGRVFD
                     VSQTAPTVSALLEKWNGVPAGKDLGDINDLGLETAWADKNGGGTPKVKLLAPVDLQCV
                     KAAGVTFAVSAMERVIEERAKGVPGKAQAIREELAARIGTDIRKVVPGSPDAAKLKEA
                     LIADGLWSQYLEVAIGPDAEVFTKAPPMSSVGWGDYVGIRTQSTWNNPEPEIVVVVDR
                     TGKAVGATLGNDVNLRDYEGRSALLLGKAKDNNAASALGPFIRMFDDKFSMDDVRQAV
                     VELEIVGADNYRLEGRSTMAEISRDPLELVKQTISEHQYPDGFVLFLGTLFAPTQDRD
                     VKGSGFTHKEGDVVRISTPKLGVLENRVTTSKAAPPWSFGISDLMKNLFRRGLLSA"
     gene            2896..3645
                     /locus_tag="VNN98_06275"
     CDS             2896..3645
                     /locus_tag="VNN98_06275"
                     /inference="COORDINATES: protein motif:HMM:NF024950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HWM61739.1"
                     /translation="MTIYSGRFSGRTAIITGGASGLGLEAAKRIAAEGGKVCLWDLNP
                     DALAAAKKETGATHTLALDVSDAKAVEAAAAESQKALGKIDILINSAGITGATHTVVD
                     YPIDSWLKVMDVNVNGLFYCCRIIVPLMLENGYGRIVNISSVAGKEGNPNASSYSASK
                     AAVLGFTKSLGKELATKGVIVNAVTPATFDSPILDQVPQSHIDYMRSKIPMERFGTAA
                     ENAAAVCWLASEECSFTTASTLDTSGGRTTY"
     gene            complement(3697..6837)
                     /locus_tag="VNN98_06280"
     CDS             complement(3697..6837)
                     /locus_tag="VNN98_06280"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HWM61740.1"
                     /translation="MNLRISKSALRCGVACIALVCVTGARAQEKIIDIPAEDGGKSIP
                     ELARQAGVQIIAPGQALHGVVTPAVKGAYEVRVALTGMLQGTDLRIASDDGQIIVLAQ
                     NQRNVPAAADPVTAAAASPAIEQVVVTGSRVISSIANSPTPLTVVTAEQLRSTTPTNI
                     PDALNKLPVFVGSQQPRSAGNGGTGSGQNVLALRNFGAQRTLVLFDSHRVAPDNANGT
                     VNVDVLPQLLMSRVDVVTGGASAVYGSDAVTGVVNFVLDKHFEGFKFDLNSGISNYGD
                     GFSYKTAAAFGTDLFGGRGHFEMSVEHFNQDGVPISSRPYGPGYWSLAGAGTAANPFA
                     FVQNTRVPTHTFGGLIACAAPCTVNGQQFVTDGVVGPFVHGSPTGTANVESGGDGAYD
                     PFGQAITYFRTSNAFGRFSYNLDDTTSFYVQASGSESFASGTWYPMLLNPGANQTNTF
                     FKNNPFLPASVQTALGNNGTATVGGAGDNTFQLTEYLTKFGIGEAPGTRNLNRYLSVA
                     TGLDGTLLGKYDWDLYYGHGEARQSITNVRNRNDARIYAALDAVPGPNGSAVCYVSTT
                     SNASLYPGCVPLNPFGPTAMSQSAYDYISGNTRYIMTNIMDNVSGSVAGTLFEDWAGP
                     VKVALSGEARWNTYDVNSNAQPTDKVDCTGLRLCSNQLVVWAQNTVANAHASNNVWEF
                     AAEADVPLLKDLPLVQSFDVNLAGRYTDYSSSGSVQTWKIGLDYHITDDVRLRATNSI
                     DIRAPTLNDLFSPVQNSVTGFTDLHTNTNGSLFTSSQGNPNLVPEVARTYTAGVVFTP
                     SFIPNLTLSYDYYHINLKNAIASISASNVQIQNLCEQSNGTSPYCTLFIRPLPFSDHT
                     PANYPTSVLSESLNTANTMIEGADTEADYHFDLADIEQSLPGSLNLRVLANYQPVNRS
                     QTFPGASITRSIISRGHVTAFIDYDLGNWSFGLQNRWISNFKQASQSTIIFALPYIRS
                     QDYVDINIARKFNVDGADYSAYLTVQNLFNSLAPLDPTTSGAPGIFYPVPGGSNGGTG
                     ADVMGRYFTIGLRASL"
     gene            complement(6933..7184)
                     /locus_tag="VNN98_06285"
     CDS             complement(6933..7184)
                     /locus_tag="VNN98_06285"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61741.1"
                     /translation="MAWAPPDAPISTAPVDSVQVSRDLAWREGCLVFDNEPLAGAAQE
                     FARTSAIGILISRPVAISLDLQLKVTSGGVRVSREEAKR"
BASE COUNT         1426 a         2241 c         2370 g         1413 t
ORIGIN      
        1 ggaataggcc gtcttggtct gggtgaagaa ttccaccgcc gcgaaaccct gttcgcgcgc
       61 gccataggaa gagccgcgcg aaccgccgaa cggcacgtgg taatcgacgc ccgcagtcgg
      121 caggttgatc atcaccatgc ctgccttgac gttgcgctgg aagtggcgcg catgcttgag
      181 gctggtggtg acgatgccgg cggagaggcc gaaattgcct gcgttcgaca gcgccaggcc
      241 ttcttcgtag tccttgatct tcaccaccga cacgaccggg ccgaacactt cttcctggtt
      301 gatgcggtca ccgggcttgg tgtccacgat caaggtcggg ctcatgtaat ggccgggtgt
      361 cgcaagcttc agcggctcgg cgccgccggc cagaaggcgg ccgccttcct tcaacgcgat
      421 gtccacatag ttgaggttgc ctgccaactg ggtgtcggta acagcggggc ccatctgggt
      481 ggaaggatcc agcgcattgc ccactttcag cgccttggcg cgttcggcga cggcggcgat
      541 gaacttgtca taaatgccct gctgcacgaa cacgcgcgag gaagcggtgc agcgctggcc
      601 ggtggcgaaa tagccgccgt ccaccgcgat ctgcacggca cgatcgaact cggcatcgtc
      661 cagcaccacc agcgggttct tgccgcccat ttccaactgc acgcgcgcct gacgcgacac
      721 ggctgccaag gcgaccttgc tgccgacggt ctgcgagccg gtgaaggtca cgccattgac
      781 gtcgggatgc ttggacagtg cgtcgccgac cacgccgcgg cccagcacca ggttcacggt
      841 gccggccggc gcgcccgctt catgcaggat cgccaccagc gcatgcgccg tggcgggggt
      901 cggattggca ggcttgagca cgacggtgtt gccgaaggcc aaggccggcg ccatcttcca
      961 ggccgggatg gcgatgggga aattccacgg cgtgatcagg ccatagacgc cgaccgcctc
     1021 gcgataggtc tggatttcca cgcccgggcg caccgagtcc agattctggc cgtggcggcg
     1081 caacgcctcg ccggccatgt atttgaagat gcggcccgcg cgcaccgttt cgccggtggc
     1141 ttcgggaagg gtcttgccct cttcggtcgc aagcagcttg cccagcgcgt ccttgcgctc
     1201 gatgatcatg ttgccaacct tgtcgagcag gtcggcgcgg acttccgggg tcgaacccga
     1261 ccagccggag aaggcgctgc gggcggcggc gaccgcgtcg ttcacatcct cgacgctgcc
     1321 gtcggggaac ttggcgatga tttcgttggt gttggagggg ttggtgcttt cgagcgcgcc
     1381 gggggcggaa atctgcttgc cgccgataaa atgggtcagg gtctcggtca tcaaatctct
     1441 ccggaagaag ggaaaacggg tcggtgtatt taaggggtcg gacggcctaa tccaaccccg
     1501 gaaccgcatc ccagcgatgt catgaaggta tggatcaggc gctcaaaagc ccgcgccgga
     1561 aaaggttttt catcaggtcg gaaatgccga aagaccaggg cggcgcggcc ttggaggtgg
     1621 tcacccggtt ttccagcacg cccagcttgg gggtggaaat ccgcaccaca tcgccctcct
     1681 tatgggtgaa accggaaccc ttgacgtcgc ggtcctgggt gggggcgaac agggtcccca
     1741 ggaacaggac aaagccatcg ggatactggt gttcgctgat ggtctgcttc accagctcca
     1801 gcggatcgcg gctgatctcg gccatggtgg agcggccttc cagccggtaa ttgtcggcgc
     1861 ccacgatctc cagctcgacc accgcctggc gcacatcgtc catgctgaac ttgtcatcga
     1921 acatgcggat gaacggtccc agcgctgacg cggcattatt gtccttggcc ttgcccagca
     1981 gcaacgcact gcgtccttca taatcgcgca gattgacgtc gttgcctaag gtcgcgccca
     2041 ccgccttgcc ggtacggtcc accaccacca cgatttccgg ctcgggattg ttccaggtgg
     2101 attgggtgcg gatgccgaca taatcgcccc agccgaccga ggacatgggc ggcgccttgg
     2161 tgaagacttc ggcgtcaggg ccgatcgcca cttccagata ttgcgaccac agcccatcgg
     2221 cgatcagcgc ctctttcagc ttggcggcgt ccggcgaacc gggcacgact ttgcggatat
     2281 cggtgccgat acgcgccgcc aattcttcgc ggattgcctg cgccttgccg ggcacgccct
     2341 tggcgcgttc ctcgatcacc cgctccatcg ccgaaacggc aaaggtcaca ccagccgcct
     2401 tgacgcattg caggtccacc ggcgccagca atttcacttt cggagtgccg ccaccatttt
     2461 tatcagccca ggccgtttcc aaacccaggt cattgatgtc gcccaggtct ttgccggccg
     2521 gcacgccatt ccatttttcc agcagcgccg acacagtcgg cgcggtctgg gatacatcga
     2581 acacccggcc ttccttcacc accacagggg tcggtccttc gcccatgtcg atgcggccca
     2641 ccagcacggc gtcgcgccag tcttcaggca tgaagccctg cggcagggga aaaacactct
     2701 tggtcatcaa gggctttcat ttcaaactat tgccgaaggc gtccggcgat ggatttcaga
     2761 taggcgacga agccaagaaa gtccacgccg ccctgggatc gccatcgcca tcgcggcatt
     2821 ttcgcccctg ttgcgttgca acattttctt ttgcgactcc gctgctataa ccgctttgaa
     2881 cacagggaac ggtacatgac gatctattcc gggcgcttca gcgggcgcac tgccattatc
     2941 accggcggcg cctcgggcct tggcctggaa gcggccaagc gcatcgcagc cgagggcggc
     3001 aaggtctgcc tgtgggacct gaacccggac gctctggccg ccgccaaaaa ggaaacgggc
     3061 gcgacccaca ccctcgcgtt ggacgtcagc gacgccaagg ctgtagaagc cgccgccgcc
     3121 gagtcccaaa aggcactggg caagatcgac atactgatca acagcgccgg catcaccggc
     3181 gccacccaca cggtggtgga ctatcccatc gacagctggc tgaaggtgat ggatgtcaac
     3241 gtcaacggac tgttctattg ctgccgcata atcgtgccgc tgatgctgga aaacggctat
     3301 ggccgcatcg tcaatatctc atcggtcgcg ggcaaggaag gcaatcccaa cgccagttcc
     3361 tattccgcgt caaaagcggc ggtgctgggc ttcaccaaat cgctgggcaa ggagctggcg
     3421 accaagggcg tgatcgtcaa tgccgtgacc ccggcgacct ttgacagccc gatcctggac
     3481 caggtgccgc agagccacat cgactatatg cgctccaaga ttccgatgga acggttcggc
     3541 acggcggccg aaaacgccgc cgcggtctgc tggctggcca gcgaggaatg ttccttcacc
     3601 accgccagca cgctggatac ctcgggtggt cgcacaacct attagcaggc acagccggcc
     3661 ggcaccgcca ggggggacag taccggccgg ccgcgatcac agactggcgc gcaggccaat
     3721 cgtgaagtac cggcccatga cgtcggcacc ggtaccgccg tttgagccgc cggggacggg
     3781 gtagaagatt ccgggcgcgc ccgatgtggt tggatccaga ggcgcgaggg agttgaacag
     3841 attctggacg gtcaggtatg cgctgtagtc cgcgccgtcg acgttgaact tccgggcgat
     3901 attaatgtcg acatagtcct gcgagcggat atagggcagg gcgaagatga tggtggactg
     3961 gctggcctgc ttgaaattgc tgatccagcg gttttgcagt ccaaagctcc aattgccgag
     4021 gtcgtaatct atgaaggccg tgacatggcc tcttgagatg atggagcggg tgatgcttgc
     4081 gcctgggaag gtctgtgagc ggttgacggg ctggtagttt gccagcacgc gcaggttcaa
     4141 ggatcccggc agggattgct ctatgtcggc gagatcgaaa tgataatccg cctccgtgtc
     4201 cgcgccttca atcatggtat tggcggtatt gagggactcc gacagcaccg aggtgggata
     4261 gttggccggg gtatgatcgc tgaacggcaa aggacggatg aacagcgtgc aataaggcga
     4321 cgtgccgttt gactgctcgc agaggttctg gatctgcacg ttggaggcgc tgatgctggc
     4381 gatcgcgttc ttcaggttga tatgataata gtcataggac agcgtcaggt ttggaatgaa
     4441 gctgggggtg aacacaacac ccgcggtgta agtgcgggcc acttccggca ccagattggg
     4501 gttaccctgg ctggacgtaa acaagctgcc attggtgttg gtgtggagat cggtgaaccc
     4561 tgtcaccgag ttctgtaccg gcgagaacag gtcattcaga gtaggggcgc gaatgtctat
     4621 ggaatttgtg gcccgcaagc gcacatcgtc ggtgatgtga taatccaggc cgatcttcca
     4681 ggtctggacc gatcctgaac tgctatagtc cgtgtaacgg ccggccaggt tcacgtcgaa
     4741 gctctgcacc aggggcaaat ccttgagcag cggcacatcg gcttcggcgg cgaattccca
     4801 cacattgttg gaggcatgag cgttggcgac ggtgttctgg gcccatacca ccagctggtt
     4861 gctgcaaagg cgcagtcccg tgcaatcgac cttgtcggtt ggttgggcgt tgctgttgac
     4921 gtcgtaggtg ttccagcgcg cttctccgga aagcgccacc ttcaccggcc cggcccaatc
     4981 ctcgaacagg gtgcccgcga cgctgccgct cacattgtcc atgatgttgg tcatgatgta
     5041 gcgggtgttg ccgctgatat aatcataggc cgactgggac atggcggtgg gcccgaaggg
     5101 gttgagaggc acacaaccag gatagagact ggcatttgag gtggtagaga catagcaaac
     5161 tgccgagcca ttgggccccg gcaccgcatc cagggcggca tagatgcgcg catcgttgcg
     5221 attgcggacg ttggtgatgc tttggcgggc ttcgccatgg ccgtaataga gatcccagtc
     5281 atacttgccc aacagagtgc cgtccaagcc ggtggcaacg ctgagatagc ggttgagatt
     5341 gcgcgtgccc ggcgcctctc cgatcccgaa cttggtcaga tactccgtca gctggaaggt
     5401 gttgtcgccc gcgccaccga ctgtggcggt gccgttattg cccaatgctg tctgaacgga
     5461 cgccggcagg aacggattgt tcttgaagaa tgtattggtt tggttggccc cggggttgag
     5521 cagcatggga taccaggtgc cggaggcgaa ggactccgaa cccgaggcct ggacatagaa
     5581 gcttgtggtg tcgtcgagat tgtagctgaa gcggccgaag gcgttgctgg tgcggaaata
     5641 ggtgatggcc tggccgaagg ggtcataggc gccgtcgccg ccggactcga cattggcggt
     5701 gccggtgggg gagccgtgta caaacggccc caccacaccg tcggtcacga attgctggcc
     5761 attgaccgtg cagggcgccg cgcaggcgat caacccgccg aaagtgtgag tgggaacgcg
     5821 cgtgttttgg acgaaggcaa acggattggc ggcggtcccg gcgccggcca aactccaata
     5881 tcccggacca taggggcggc ttgagatcgg cacgccgtcc tggttgaaat gctccaccga
     5941 catctcaaaa tggccgcggc cgccgaacag atcggtgccg aaggcggcgg cggtcttgta
     6001 gctgaagccg tcgccataat tggagatgcc gctgttgagg tcgaacttga agccttcaaa
     6061 atgcttgtcc agaacgaaat tgaccacgcc ggtcaccgca tccgagccgt agaccgcgga
     6121 cgccccgccc gtcaccacat caacccggct catcagcaac tggggcagca cgtcaacatt
     6181 caccgtccca ttcgcgttgt cgggcgcaac ccggtgactg tcaaacagga ccagcgtgcg
     6241 ctgcgccccg aaattgcgca gcgccaggac attctggccg ctgcccgtac cgccattgcc
     6301 cgcgctccgc ggctgctgcg agcccacaaa aacaggcaac ttgttcaagg cgtcggggat
     6361 attggtgggt gtggtggacc gcagctgctc ggcggtaacg acggtcaagg gcgtgggcga
     6421 attggcgatg ctggaaatga cacgggaacc ggtgacgacc acctgttcga ttgcgggact
     6481 tgccgcggcc gccgtgaccg ggtccgcggc ggcgggaaca tttctctggt tttgcgccag
     6541 cacgatgatc tgcccatcat cggaggcgat gcgcagatcg gtaccctgca acatgccggt
     6601 cagcgcgacg cggacttcat acgcaccctt caccgccggc gtgacgacgc cgtgcagcgc
     6661 ctggcccggt gcgatgatct gcaccccggc ctggcgcgcc agttcgggga tcgacttgcc
     6721 gccgtcttcg gcaggaatgt cgatgatttt ttcctgggcc cgggcgccgg tcacgcaaac
     6781 aagggcgatg caggccacgc cacaacgcag cgccgacttg gagattcgca agttcatcag
     6841 cttcccctct gaaatttttc accacattgc agtggcttgt ttgcttcaca tgatcggtct
     6901 tgcagatatt gacgatccag attccaaatt ccctaccgtt tcgcctcctc gcggctcacg
     6961 cgaaccccgc cgctggttac tttcagttgt agatcgagcg agatggcgac gggccgcgaa
     7021 ataagaatcc cgatggcgct ggtgcgagcg aactcctggg ccgcgccggc aagcggctcg
     7081 ttgtcgaaga caaggcagcc ttcgcgccat gccagatccc ttgacacctg tacactgtcg
     7141 acaggagcgg tcgaaatcgg cgcatcgggc ggcgcccagg ccaatgcctg tgccgccggc
     7201 cccaatcgcc gcgcgacaaa aaaaggccgc agcggatagc tgcggccttt gggagaaaga
     7261 aataccgcgg ccccggacgg gccacggcac tgccatcaga gattgccgcg gacgccgatg
     7321 atgaaatagc ggcccatcag gtcttcgcca atcggggtgt tgatgccacc agggtttccg
     7381 ctcgatccga tgacatccgg ggggatggca ttgaaggcat tctgcacgtt gaaatatgca
     7441 gacatgaccg
//
LOCUS       DATMDK010000325         6933 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_624296,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000325 DATMDK010000000
VERSION     DATMDK010000325.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 6933)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6933)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6933
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_624296"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1315
                     /locus_tag="VNN98_06290"
     CDS             <1..1315
                     /locus_tag="VNN98_06290"
                     /inference="COORDINATES: protein motif:HMM:TIGR00368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="YifB family Mg chelatase-like AAA ATPase"
                     /protein_id="HWM61742.1"
                     /translation="VNLAPADLPKEGSHYDLPIALGLLAAMGVLPASEMANYVALGEL
                     SLDAAVTPVAGVLNAAMAASEQNRGLICPAANGPEAAFAGGGEILATPSLIALVNHIK
                     GASVLAEPVPRVLAALRAAPDLRDVKGQESAKRALEIAAAGGHNLLMIGPPGAGKSML
                     AQRLPGLLPPLDAREALEISMIQSLAGALEGGAISRIRPFRNPHHSASMAALVGGGLK
                     VKPGEVSLAHLGVLFLDELPEFQRGVLDSLRQPIETGEAVVARANAHVRYPARFQLVA
                     AMNPCRCGYLSDPALGCGRAPKCAGDYQARISGPLFDRIDMHVEVASVSASDLTLPPP
                     AEGSAEVAARVAAARAVQRERFAEYSIRINAEAEGELLDAIATPDAAGAKLLTEAAER
                     MRLSARGYHRVLKVARTIADLAGAVAVAKPHIAEALSYRRITHLA"
     gene            complement(1381..1632)
                     /locus_tag="VNN98_06295"
     CDS             complement(1381..1632)
                     /locus_tag="VNN98_06295"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61743.1"
                     /translation="MHKSNRIIGAGTVIAMLMAAPVMAQTSAPLTPAGPAGISGATGL
                     SVGTLAAIGAGALAVAAIATIASQSGNNAPINTSTATTS"
     gene            complement(1823..2728)
                     /locus_tag="VNN98_06300"
     CDS             complement(1823..2728)
                     /locus_tag="VNN98_06300"
                     /inference="COORDINATES: protein motif:HMM:NF014066.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TraB/GumN family protein"
                     /protein_id="HWM61744.1"
                     /translation="MRARLGYWIVWFGLSLMGGVPALAADGPPVVHANPAMWTVHEPA
                     GTAYLLGSVHALPENIEWQTPQIKAAIRRSGTFVFEVPMQSDDRERAARLLGENMLLP
                     STTSLPSYFDSEMRSEFHAAVMHTQVTPEILVRLRPWYAAKLLTGAMTRGASPLFADE
                     GVDNKVAAMARDRGASFRALETDEFQIHMLMGDATPSNELSMLRTAMKQASTMPMTPF
                     NKLLTAWETGDVAGIAATGPDRMTPAERKIILDDRNSAWVPQIEKMLKERRTFFITVG
                     AAHLVGPAGVPAQLRAAGYRVDGPQ"
     gene            2927..3559
                     /locus_tag="VNN98_06305"
     CDS             2927..3559
                     /locus_tag="VNN98_06305"
                     /inference="COORDINATES: protein motif:HMM:NF013933.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysE family translocator"
                     /protein_id="HWM61745.1"
                     /translation="MPSATSLLAFALVSLGMVLTPGPNMIYLISRSITQGRKAGLISL
                     GGVALGFVFYMLCAAFGITAIVMAVPYAYDGLRIGGALYLLYLAWQAVRPGGRSPFQV
                     RDLPVDGPRRLFLMGFVTNLLNPKIAVMYLSLLPQFLNPERGSILGQSLALGATQIAV
                     SITVNAAIAMTAGSIAAFLTGRPVWATVQRWIMATVLGALALRMAAEARR"
     gene            3611..3832
                     /locus_tag="VNN98_06310"
     CDS             3611..3832
                     /locus_tag="VNN98_06310"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61746.1"
                     /translation="MKPIAILGLVLIFAGLAGLFFSHFSWTETRPVLRAGPLEITSQE
                     DHTVWIPTAAGVVAVLAGLGLVFVGKRAA"
     gene            4051..4587
                     /locus_tag="VNN98_06315"
     CDS             4051..4587
                     /locus_tag="VNN98_06315"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HWM61747.1"
                     /translation="MRSIIKIALGAAVAVGLGAASYALAQTDPKVGTTVNDPAGPVPD
                     PSHVPVVLPKDIKCTGTVGKQQTCILFGDPSKPGLYGVVYKWYAGNFSKPHFHDQDRY
                     AYVLSGTWWVSTSNIYDERTTYPVHAGTVSIDVKNTVHWDGARTGEKEPAILELVGMG
                     PVKTIQVDETGKPKPGQQ"
     gene            4631..5179
                     /locus_tag="VNN98_06320"
     CDS             4631..5179
                     /locus_tag="VNN98_06320"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HWM61748.1"
                     /translation="MRLTIALAAACAFLAAPAVAETQEQLLTQGPPKTSQPLPDPRNI
                     PMIFGKDIPWKGETGEHQAPLFGDPNKPGIYGVLIKWDPGHNSKPHFHSTDRYIYVVS
                     GTWWVSSSTHYDASKMYPIPAGTFVTDIKDTIHWDGAKAETGPCILMLVGEGEMHTTR
                     YVPKDAAKDADGQDFVAPPAQK"
     gene            5243..5437
                     /locus_tag="VNN98_06325"
     CDS             5243..5437
                     /locus_tag="VNN98_06325"
                     /inference="COORDINATES: protein motif:HMM:NF023183.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3311 domain-containing protein"
                     /protein_id="HWM61749.1"
                     /translation="MKRFHPVYLFLVVPYAAWAWVPFYNRLEPSLLGVPFFYWWQIAG
                     IFLTALCILPVYLHQEGRRK"
     gene            5434..6693
                     /locus_tag="VNN98_06330"
     CDS             5434..6693
                     /locus_tag="VNN98_06330"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium:solute symporter"
                     /protein_id="HWM61750.1"
                     /translation="MSSTVIVFLVLFLFVALLGLFGSRWRAGDLSQLHEWGLGGRSFG
                     TIITWFLLGGDLYTAYTFIAVPALMFGAGAGGFFAVPYAALMYPLLFLAFPRLWSVAN
                     VHGYVTAADFVRGRFGHRGLALAIAVTGLVAVMPYIALQLVGMQVVIAALGLDYAVHL
                     PLLGTVSAPLIAAFAVLAAFTYTSGLRGTALIAVVKDILVYITVLAAIIIIPAKLGGY
                     GAVFAAVPPKQLLLPPTPPGSLGAGFGYITLALGSLLALFLYPHSVTGLLSSSSRHVI
                     RRNAMVLPAYSVALALIALLGYMALASGVKAMPEYAAGFKSFGNNFAVPALFLHMFPG
                     WFAGLAFAAIAIGALMPASIMAIACGNLFTRNIFKEFLSPDCTPQAEARVAKLVAFIA
                     KLGALFFVLELQTAYAIQLQLLGGIWI"
     gene            6700..>6933
                     /locus_tag="VNN98_06335"
     CDS             6700..>6933
                     /locus_tag="VNN98_06335"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61751.1"
                     /translation="MPAVLLALYVRLDPRALLAGWATGVGLGTWMVMQLGFKSSTYPL
                     HIFGLTVPCYAAVSALLANLLVSWILTIMLRVTT"
BASE COUNT         1144 a         2209 c         2216 g         1364 t
ORIGIN      
        1 cgttaacctc gcccccgccg acctgcccaa ggaaggcagc cattacgacc tgcccatcgc
       61 gctgggcctg ctggcagcga tgggcgtgct gcccgccagc gaaatggcca attacgtggc
      121 gctgggcgaa ctgtcattgg acgcggcggt gacgcccgtg gccggggtgc tgaatgcggc
      181 gatggcggcg tccgaacaaa atcgtgggtt gatctgtccc gccgccaatg gcccggaagc
      241 cgcctttgcg gggggaggcg aaatattggc gacgccgtcg ctgatcgccc tggtcaatca
      301 catcaaaggc gcatcggtcc tggccgagcc ggtgccgcgc gtgctggccg cgctgcgcgc
      361 cgcgccggac ctgcgcgacg tcaagggcca ggaaagcgcc aagcgggcgc tggagatcgc
      421 ggcagcaggc ggacataatt tgttaatgat cggcccgccc ggcgcgggca agtccatgct
      481 ggcgcagcgc ctgcccggcc tgctgccgcc gctggatgcg cgtgaggcgt tggagatttc
      541 catgatccag agcctggccg gggcgctgga aggcggggcg atttcgcgta tccggccctt
      601 tcgcaatccg catcactccg cctcgatggc ggcgctggtg ggcggcggct tgaaagtgaa
      661 gccgggcgag gtttcgctgg cgcatctggg cgtgctgttc ctggatgagc tgcccgaatt
      721 tcagcgcggc gtgctggaca gtctgcgcca gcccatcgag accggcgagg cggtggtggc
      781 gcgcgctaac gcccatgtgc gctatccggc gcgcttccaa ttggtggcgg cgatgaatcc
      841 ctgccgctgc ggctatctca gcgatccggc gttgggctgc ggccgcgccc ccaaatgcgc
      901 cggcgattac caggcgcgca tctcaggccc gctgttcgac cgcatcgaca tgcatgttga
      961 agtggcaagc gtcagcgcca gcgatctcac tttgccgccg cccgccgaag gcagcgccga
     1021 ggtggcggcg cgggtggcgg cggcgcgcgc cgtccagcgc gaacgcttcg ctgaatattc
     1081 catccgcatc aatgccgagg ccgaaggcga gctgttggac gccatcgcca cccccgacgc
     1141 ggcgggcgcc aagctgctga ccgaagcggc cgaacggatg cggttgtcgg cgcgcggcta
     1201 tcaccgggtg ctgaaagtgg cccgcaccat cgccgatctg gcgggcgcgg tggcggtggc
     1261 caagccgcat atcgccgagg cgctgagcta tcggcgcatt acgcatctgg cctgatcggc
     1321 gttacagcgt gaaaagcccc gccaactatc gccggcgggg cttcacgaat gccgcaaaag
     1381 ctatgaggtg gtggcggtgg acgtgttgat cggcgcgttg ttgccgctct gggacgcaat
     1441 ggtggcgatc gccgccacag cgagggcgcc tgcgccgatc gcagcgagag tgccgacgga
     1501 caggcccgtg gcgccggaga ttccagcggg gccggccggg gtaaggggag cactggtttg
     1561 tgccatgaca ggcgcggcca taagcatggc gataacagtg ccggcgccga tgatccggtt
     1621 ggatttatgc atgttactga gtacccccta aagtatgcgg caggatgcaa tatctgattg
     1681 aacttactgt gacgacgatt cgcgtcaaag tgccagcatt gtcgcatgct ctcgtttgaa
     1741 atcgcgattg atgccgccgt ttcggtctgg atcttgtgac agttcggtga acccgcggga
     1801 tacaacctga caacttctcg tgctattgcg gaccatcgac gcgatagccg gcggcgcgga
     1861 gctgcgctgg aacgcccgcg gggccgacca gatgggcggc gccgaccgtg atgaagaatg
     1921 tccggcgctc cttcagcatc ttttcgatct gcggtaccca ggcgctgttg cgatcatcca
     1981 atataatttt gcgttccgca ggcgtcattc ggtcggggcc ggtggctgca atacccgcga
     2041 cgtccccggt ctcccaggcg gtcagcagct tgttgaaggg tgtcatcggc attgtgctgg
     2101 cctgcttcat cgcggtgcgc agcatggaca gttcgttgga cggcgtagca tcgcccatca
     2161 gcatgtgaat ctggaattca tcggtttcca gcgcccggaa gctggcgccg cggtcgcgcg
     2221 ccatggctgc caccttgttg tcgacccctt catcggcaaa aagcggcgat gcgccccggg
     2281 tcatggcgcc ggtcaaaagt ttggccgcat accaaggacg caaccggacc aaaatttcgg
     2341 gcgtgacttg ggtatgcatg acggcggcat ggaattccga acgcatctcg ctgtcgaaat
     2401 aggacggcag ggaggtggta ctgggcagca gcatgttttc gcccagcaac cgcgcggcgc
     2461 gttcgcggtc gtcgctttgc atgggcactt cgaagacgaa cgtgccggaa cggcggatgg
     2521 cagccttgat ctgcggcgtc tgccattcga tattttcagg cagagcatgg accgagccca
     2581 gaagataggc agtgccggcg ggctcgtgca cggtccacat cgccgggttg gcatgaacca
     2641 ccggcggtcc atctgccgcc aaggcaggga ccccgcccat aagggacagg ccgaaccaga
     2701 cgatccaata accgagtcgc gcgcgcatag gccccattcc aaagctgcct gggcgaatat
     2761 gcattcggac agcttaaagg cccgtaaacc gatgcctaaa aatttatcga acgcggccac
     2821 ctgtccaagc atggtcccgc gtggggcatg cctgaaatgc agtctgggaa atggcgcgaa
     2881 tggaattccg cgcctatcgt gacacggtcg caccaaggga ttcgtcatgc cgtccgcaac
     2941 cagcctgctg gcctttgccc tggtgtcact tggcatggtg ctgacacccg gccccaacat
     3001 gatctatctg atctcccgct cgatcacgca gggccgcaag gcggggctga tttcgctggg
     3061 cggtgtggcg ctgggtttcg tgttttacat gctgtgcgcg gctttcggga tcaccgccat
     3121 cgtgatggcg gtgccttatg cctatgacgg cctgcggatc ggcggcgcgc tctatcttct
     3181 ctatctggcc tggcaggcgg tgcgccccgg cggccgctcg ccgtttcagg tgcgcgatct
     3241 gccggtggac ggtccgcgcc gccttttcct gatgggcttt gtcaccaatc tgctcaatcc
     3301 caagatcgcg gtgatgtatc tgtcgctgtt gccgcaattc ctgaacccgg agcggggcag
     3361 catcctgggc cagtccctgg cgctgggcgc gacccagatc gcggtcagca tcaccgtcaa
     3421 tgccgccatc gccatgacgg ccggctccat cgcggcgttt ctcaccggcc gcccggtctg
     3481 ggccaccgtc caacgctgga tcatggcgac ggtgctgggc gcactggcgc tgcgcatggc
     3541 ggcggaagcc cgccgctagg gaacttttgc ctcccaccgc ccgttgcctt ctcatattga
     3601 ggaggcattg atgaagccga ttgcgatttt gggtctggtt ttgattttcg ccggccttgc
     3661 cggcctgttc ttcagccact tcagctggac cgagacccgg ccggtcctga gggccggtcc
     3721 cctggaaatc acttcccagg aagatcatac ggtctggatt cccaccgccg cgggggtggt
     3781 cgcggtgctg gcgggtctcg gcctggtgtt cgtgggcaag cgcgccgcat aaatccccct
     3841 cacccccggc ggcgcagatg gcaaaagcgc atccctacct tcccctctcc cccttagggg
     3901 gagagggcgc tgcaacgcgt agggttgcgg gtgaggggga tgtgccgatc accgggcgtt
     3961 tcgctgcacc cgcgaacaaa aagactgcct atttgcgggt gtcacgcttc tgcgccatca
     4021 tcatccccat aattccacgg ggagaaaaac atgcgttcca tcatcaagat tgctttgggc
     4081 gccgcagtcg cagttggact gggtgccgcc agctacgccc tggcgcagac cgacccgaaa
     4141 gtcggcacta ccgtcaacga tccggcgggg cccgtccccg atcccagcca tgtccccgtt
     4201 gtcctgccca aggacatcaa atgcaccggc acggtgggca agcagcagac ctgcatcctg
     4261 ttcggtgatc cctccaagcc ggggctctat ggcgtggtct acaaatggta tgcgggcaat
     4321 ttctccaagc cccatttcca cgaccaggac cgctacgcct atgtgctttc gggcacctgg
     4381 tgggtcagca ccagcaatat ctatgacgag cgcaccacct atcctgtcca tgccggcacc
     4441 gtctccatcg acgtgaagaa caccgtgcat tgggacggcg cccgcacggg cgaaaaggag
     4501 ccggcgatcc tggaactggt gggcatgggt ccggtgaaga ccattcaggt ggacgaaacc
     4561 ggcaagccca agcccggtca gcaataagac cccgccaaca ataagaaacg tcaataagaa
     4621 aggtaccgcc atgcgtttga ccatcgctct tgccgcggcc tgcgcttttc tggccgcgcc
     4681 tgctgttgcg gaaacccagg agcagctgct gacccagggc ccgcccaaga ccagccagcc
     4741 actgcccgat ccccgcaaca ttcccatgat cttcggcaag gacattccct ggaaaggcga
     4801 gacgggcgag catcaggcgc cgctgttcgg cgatccgaac aagcccggca tctatggcgt
     4861 actgatcaag tgggacccgg ggcataactc caagccgcat ttccactcca ccgaccgtta
     4921 catctatgtc gtatccggca cctggtgggt gagcagcagc acccattacg acgccagcaa
     4981 gatgtatccc atcccggccg ggaccttcgt caccgacatc aaggacacca tccattggga
     5041 cggcgccaag gcggagaccg ggccctgcat cctgatgctg gtgggcgaag gcgaaatgca
     5101 caccacccgc tatgtcccca aggatgcggc gaaggacgcc gacggccagg actttgtggc
     5161 gccgcccgcg cagaagtaag ttgaaccaaa tgcaccgcgc cgcgtggcca tcgccgcgcg
     5221 gcgcaataat tgaggggccg gcgtgaagcg attccatccc gtctatctgt tcctggtggt
     5281 tccctatgcc gcttgggcct gggtgccgtt ctacaaccgc ctggagccga gtttgctcgg
     5341 cgttcccttt ttctattggt ggcagatcgc gggcatcttc ctgaccgcgc tgtgcatcct
     5401 gccggtctat ctgcatcagg aaggccgccg caaatgagca gcaccgtcat cgttttcctg
     5461 gtcctgttcc tgttcgtggc gctgctgggt ctgttcggat cgcgctggcg cgccggcgac
     5521 ctgtcccagc tgcatgaatg gggcctgggc ggacgcagct tcggcaccat catcacctgg
     5581 ttcctgctcg gcggcgatct ctataccgcc tataccttca tcgcggtgcc cgccttgatg
     5641 ttcggcgcgg gtgcgggcgg tttcttcgcc gtgccctatg ccgcgctgat gtatcccctg
     5701 ctgttcctgg cctttccgcg cctgtggtcg gtggcgaatg tccacggcta tgtcacggcc
     5761 gccgatttcg tgcgcgggcg ctttggccat cgcggcttgg cgctggccat cgccgtgacc
     5821 ggcctggtgg cggtgatgcc gtatatcgcg ctgcagctcg tgggcatgca ggttgtgatc
     5881 gcagcgctgg gtttggatta tgcggtacac ctgccgttgc tgggcacggt gtcggcgccg
     5941 ctaatcgccg ccttcgcggt gctggcggcc ttcacctaca catcgggcct gcgcggcacc
     6001 gccctgatcg cggtggtcaa ggacatcctg gtttacatca ccgtgctggc ggcgatcatc
     6061 atcatcccgg caaagctggg cggctatggc gccgtgttcg ccgccgtgcc gcccaagcaa
     6121 ttgctgctgc cgccgacacc acccggaagc ctgggcgcgg gcttcggcta tatcaccctg
     6181 gcgctggggt ccttgctggc gctgttcctc tatccccatt cggtgacggg cctgctgtca
     6241 tcctccagcc gtcatgtcat tcgccgcaac gccatggtgc tgcccgccta ttcggtggcc
     6301 ttggcgctga tcgcgttgct gggctacatg gcgctggcgt caggggtgaa ggcgatgccg
     6361 gaatatgccg ccggtttcaa aagcttcggc aacaattttg cggtgccggc gctgttcctg
     6421 cacatgttcc cgggctggtt cgcaggccta gcctttgccg ccatcgccat cggcgccttg
     6481 atgcccgctt caatcatggc catcgcttgc ggcaacctgt tcacccgcaa catcttcaag
     6541 gaattcctgt cgcccgattg cacgccccag gccgaagcca gggtcgccaa gctggtggcc
     6601 tttatcgcca agctgggggc gctgttcttc gtcctggaat tgcagaccgc ctatgccatc
     6661 cagctgcaat tgctgggcgg catctggatc tgacagacgg tgccggcggt gctgctggcg
     6721 ctgtatgtac ggcttgatcc ccgtgccctg ctggcgggct gggcgaccgg cgtgggcctg
     6781 ggaacctgga tggtgatgca gttgggcttc aaaagctcga cctatccgct gcacatcttc
     6841 gggctgacgg tgccctgcta tgccgcggtc agcgccttgc tggccaatct tctggtcagc
     6901 tggattctga ctatcatgtt gcgtgttacc acc
//
LOCUS       DATMDK010000326         3056 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2892458,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000326 DATMDK010000000
VERSION     DATMDK010000326.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3056)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3056)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3056
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2892458"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..724)
                     /locus_tag="VNN98_06340"
     CDS             complement(<1..724)
                     /locus_tag="VNN98_06340"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61752.1"
                     /translation="MGASLAGLLTVLGGTALHQGIIASASAQPPGDVMVPMFVVDPLW
                     PKPLPNHWVQAMTIGLSMDSHDNIWIIHRPQTLEQKESYATRGEADCCIAAPDVLEFN
                     EAGDLLRHWGRDEVKGNGHDWPSSNHGITVDKDGNVWLGGNGAAQPGPAPGSADQFTP
                     RPSQPAPVPFREGGGERGTYHDSFVLKFSPDGKFLGEIGHANGSKGSLDTENVKGVAQ
                     IRIIPQTNELVLADGYGNKRVSV"
     gene            complement(871..1404)
                     /locus_tag="VNN98_06345"
     CDS             complement(871..1404)
                     /locus_tag="VNN98_06345"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61753.1"
                     /translation="MSRSNLWKKAGLGAALLAAIAAPQAFQVVRAAPERPQATLPARI
                     AAGKPFAAVCKAGEIADSRPDPAWVGASFAHDNCWAPRMPAALDGATAKREQIVAGMA
                     AEKNYLALSDAYQRCIADFVAFRKARAANKPADGPLMMIETHRIFVAQENKKKAAEQI
                     RIAINAFNEYGSECPDK"
     gene            complement(1488..1934)
                     /locus_tag="VNN98_06350"
     CDS             complement(1488..1934)
                     /locus_tag="VNN98_06350"
                     /inference="COORDINATES: protein motif:HMM:NF025887.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HWM61754.1"
                     /translation="MKAHLAAGIVILLSTASAMAGPKEDLMAADRAFAHMSIEKGYDE
                     AYIAYLARDGQTFTGATPIKNKADAVRRYKDPKNPRRDPRIKIIWEPDTGGVSADGNL
                     GWTEGHSSHTGPGVSSTGHYMTVWVREGGAWKVRADMGNTDPKPKP"
     gene            2048..2965
                     /locus_tag="VNN98_06355"
     CDS             2048..2965
                     /locus_tag="VNN98_06355"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61755.1"
                     /translation="MPLPKLPIICTAMIFLVGVADAQQAAKTPPILAWAPKPARLTPY
                     AAPNKPHWKLADILHKHAGRQDWTETLVDTPDFTGAYISMAPGKKTKTLFYADDRVFW
                     VVEAGQIRFTIEGQEPFDASKGFLVQVPYRVPFSLETVGDAPSLRFEIRPAGEAPIYP
                     IAETPDPARGVQYIHAIFNGHGTYDAMNKPALDFEKDVVQGGVPPPRTFLKDDRLGVE
                     IFRGPPALPPTALGHYRANYPGLWFVLEGQETFLIEGEPLITAEQGDVVFAPVGRWHN
                     VTAAGAGHSTRLAINARPENLHWYPEGGE"
BASE COUNT          559 a          960 c          942 g          595 t
ORIGIN      
        1 ataccgacac gcgcttgttg ccatagccat cggccaatac cagctcgttg gtctgcggaa
       61 tgatgcggat ctgggccacg cccttcacat tttccgtatc gagactgccc ttgctgccat
      121 tggcatggcc gatctcgccc aggaatttgc cgtccggact gaatttcagg acgaagctgt
      181 cgtgataggt accgcgctcg ccgccgcctt cgcggaaggg taccggcgca ggctgagatg
      241 ggcgcggcgt gaactgatcg gcgctgcccg gcgccggccc gggctgagcg gcgccattgc
      301 cgcccagcca gacattgccg tccttgtcca ccgtgatgcc atggttggaa ctgggccagt
      361 catggccatt gcccttgacc tcatcccggc cccaatgccg cagcagatcg cccgcctcat
      421 tgaattccag aacgtcgggc gcggcgatac agcagtccgc ctcaccgcgc gtcgcatagg
      481 attccttctg ctccagggtc tgcggccggt ggatgatcca gatattgtcg tggctgtcca
      541 tcgacaggcc gatggtcatg gcctgcaccc aatgattggg caacggcttg ggccagagcg
      601 gatccaccac aaacatgggc accatcacat cgccgggcgg ctgggcgctg gcgctggcga
      661 tgatgccctg gtgaagcgcg gtcccgccca gcacggtcaa caggccggca aggctggcgc
      721 ccatgaataa tttccgggaa cggctgaagc tctgcatgaa tctctcccca ttattgtgag
      781 ggcgcactga gggcccctct gttacgtcaa ggcttgcacg cgcccttgcg aggcgcaacc
      841 gcttatggcg ttcgcacatg cacagaaact tcacttatcc ggacactcgc tgccatattc
      901 attgaaggcg ttgatcgcga tcctgatctg ctcggcggct ttctttttgt tttcctgggc
      961 gacgaaaatg cgatgggttt caatcatcat cagcggccca tccgccggct tgttggcggc
     1021 ccgcgctttg cggaaggcga caaaatcagc gatgcatctc tgataggcat ccgacaaagc
     1081 gaggtaattc ttctctgccg ccatgccggc cacgatctgt tcgcgcttgg ctgtggcgcc
     1141 atccagggct gcgggcatgc ggggcgccca gcaattgtcg tgtgcgaagc tggcgccgac
     1201 ccatgccgga tcgggacggc tgtctgcgat ctcgcccgcc ttgcacacgg cggcaaaagg
     1261 tttaccggcc gcaatccgtg ccggaagcgt agcctgcgga cgttcgggcg cggcgcgcac
     1321 cacctgaaag gcttgcggcg cggcgatggc cgcaagaaga gcggcgccca atccggcttt
     1381 cttccacagg ttcgaccggc tcacgcggct tgcctcccaa gccatagcaa atcatgggcc
     1441 ccgtcccgtg ccaagcttgg tttttgcggc aatgcagaag gatgagctta gggcttcggc
     1501 ttgggatcgg tattgcccat atcggcccgc accttccaag cgccgccttc cctgacccag
     1561 acagtcatgt aatgaccggt gctgctgacg ccggggccgg tatggctgga atgaccctcg
     1621 gtccagccca gattgccgtc ggcggagaca ccgccggtat cgggctccca gatgatcttg
     1681 atcctgggat cgcggcgggg atttttcgga tccttgtagc gcctcaccgc atcggccttg
     1741 ttcttgatcg gcgtggcacc ggtgaaggtc tgcccgtccc gcgccagata ggcgatatag
     1801 gcttcgtcat aacccttctc gatcgacatg tgggcgaagg cgcggtcggc cgccatcagg
     1861 tcttctttgg gacccgccat ggcgctggcg gtggaaagca ggatgacgat gccggctgca
     1921 agatgcgctt tcatgctcag tccccttcaa ggatcgccgg cgatactagg gcggggcttg
     1981 gcagtcgcct aggcatctgc tccggtgtat tctttgcgcc agcgcgaaaa aagacgaaag
     2041 gtgtccgatg ccgctcccga aactgcccat catctgcacc gcgatgattt tcctggttgg
     2101 cgtggccgac gcccagcagg cggcgaaaac gccgcccatc ttggcctggg cgcccaagcc
     2161 ggcacggctc accccttatg cggcgcccaa caagccgcac tggaagcttg ccgatattct
     2221 gcacaaacat gcgggccggc aggactggac cgagaccctg gtcgataccc ccgatttcac
     2281 aggcgcgtac atctcgatgg cgccgggcaa gaagaccaag actcttttct atgccgatga
     2341 tcgcgtcttc tgggtggtag aggccggcca gattcgtttc accatcgaag gccaggagcc
     2401 gttcgacgcg tcaaaaggat tcctggttca ggtaccgtac cgcgtgccct tcagcctgga
     2461 gacggtgggg gacgctccat cgctgcgctt tgagatacgg cccgccggag aagccccgat
     2521 ctatccgatc gccgagacac cggacccggc gcggggcgtg caatacatcc acgccatttt
     2581 caatggccat ggcacgtacg atgccatgaa caagcctgcg ctggattttg aaaaagacgt
     2641 tgtgcagggc ggcgtaccgc cgccgcgtac atttttaaaa gatgaccggc tgggcgtgga
     2701 aatcttccgc ggaccgccag cgctgccgcc aacggccctc ggccattatc gcgccaacta
     2761 tccgggcttg tggtttgtcc tggaagggca ggaaacattc ctgatcgaag gcgaaccgct
     2821 gatcacggcc gaacaaggcg atgtggtatt cgcgcccgtg ggccgctggc ataacgtgac
     2881 ggctgccggc gccggacact ccacccggct ggcgatcaac gcgcggccgg aaaacctgca
     2941 ttggtatccg gaaggcggag aataagcctg cgccgaacgt cagatcgggc cggccatggc
     3001 gggcgccaac gcgatcatga tcaggatagc gggcagcgcg taaagatatt tgcggt
//
LOCUS       DATMDK010000327         2739 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2892945,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000327 DATMDK010000000
VERSION     DATMDK010000327.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2739)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2739)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2739
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2892945"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1014
                     /locus_tag="VNN98_06360"
     CDS             <1..1014
                     /locus_tag="VNN98_06360"
                     /EC_number="3.6.4.-"
                     /inference="COORDINATES: protein motif:HMM:NF012493.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HWM61756.1"
                     /translation="QTLFYSATMPPEIQRLTDQFLHNPVRIEVSRPATTAANISQEVV
                     EIPANDWAKREALRRLIREAEPTLKNGIVFCNRKRDVDVVAKSLVKHGFDAAPIHGDL
                     DQSLRTKTLDRFRAGELKILVASDVAARGLDVPAVSHVFNFDVPIHADDYVHRIGRTG
                     RAGRSGAAYMLASHRDGKYLDAIEKLTGQKLARREMMDIEVREESRPRQGDHRGGRGG
                     RDRGRGGKDQHRDRRPPGGKFHDQVASMEPTETSAAPQAAPIQAEAPQVQEQRPPWQE
                     PKPRHEQRPRNEHRPENREKRDRGNQRQHNEQAARPEAVDKSELPAFLFRPVPVKKPE
                     PQE"
     gene            1163..2218
                     /locus_tag="VNN98_06365"
     CDS             1163..2218
                     /locus_tag="VNN98_06365"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: protein motif:HMM:TIGR00254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GGDEF domain-containing protein"
                     /protein_id="HWM61757.1"
                     /translation="MTVFNNDREQAFAKTALVLMGGAGVAATPDNFELFYAYASGENP
                     AITKVLGAAIDAKLPFTPELLIDLRQRCLSGARAAVAMESVGGNMGALIDDVLGKLAS
                     SAREAADYQDTLSAVTGELGGERSPADVRKLVDGLIAATRAMEQRAKSLEGELQASSQ
                     QVTELRTKLADVRKESMTDPLTNIANRKAFDDAMEEGRKAAADGENVSLLMCDIDHFK
                     KFNDTWGHQTGDQVLRLVATCLSENVKGRDTAARYGGEEFAVLLRGTGMNAATHVADQ
                     IRKTVETKKLVKKSTGGILGTITISIGVARFASDETVESVIRRADACLYGAKRSGRNL
                     VVNLDDTRMAALEISAA"
     gene            2264..>2739
                     /locus_tag="VNN98_06370"
     CDS             2264..>2739
                     /locus_tag="VNN98_06370"
                     /inference="COORDINATES: protein motif:HMM:NF012596.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase-related protein"
                     /protein_id="HWM61758.1"
                     /translation="MHQTFDRVHLTAHGKTAVITLDHPLTVNALSIAMVGGLNAALDA
                     LQAGSFRALVLTGQGRGFCSGADMKELAARRAEGAGQVLERLYHPLFRRLRDLDMPIV
                     TAVNGAAVGIGMSLALMGDLTVAAHSSYFLLSFARIGLVPDGGATWLLPRLIGLARA"
BASE COUNT          525 a          935 c          865 g          414 t
ORIGIN      
        1 cagacgctgt tctattccgc caccatgccg ccggaaatcc agcgcctgac cgatcagttc
       61 ctgcacaatc cggtgcgcat cgaagtctcg cgccccgcca ccaccgccgc caacatctcc
      121 caggaagtgg tggaaatccc cgccaatgac tgggccaagc gcgaggcgct gcgccgcctg
      181 atccgcgagg ccgagccgac cctgaaaaac ggcatcgtct tctgcaaccg caagcgcgac
      241 gtggatgtag tggccaagag cctggtcaag cacggcttcg acgccgcccc cattcatggc
      301 gacctcgacc agagcttgcg caccaagacc ctggaccgct tccgcgccgg tgaactcaag
      361 atcctggtgg ccagcgatgt cgcggcgcgc gggctcgacg ttccggcggt cagccatgtg
      421 ttcaatttcg acgtgccgat ccatgccgac gactacgtcc accgtatcgg ccgcaccggg
      481 cgcgccgggc gcagcggcgc cgcctatatg ctggcctcgc atcgcgacgg caaatatctc
      541 gacgccatcg aaaaactcac cggccagaaa ctggcgcgcc gcgaaatgat ggacatcgaa
      601 gtgcgcgagg aaagccgtcc ccgccagggc gatcatcgcg gcggcagggg cggacgcgac
      661 cgcggccgcg gcggcaagga tcagcatcgt gaccgccgcc cgccgggcgg aaaattccac
      721 gatcaggtcg ccagcatgga acccacggaa acgagcgccg cgcctcaggc cgcgcccatc
      781 caggccgaag caccccaagt ccaggaacaa cgtcccccgt ggcaagagcc caagccccgt
      841 cacgagcaac gtccccgaaa tgaacatcgc cccgaaaacc gggaaaagcg cgatcgtggc
      901 aaccagcgtc agcacaatga gcaggcggcg cgtcctgaag ccgtggacaa aagcgaattg
      961 ccggccttcc tgtttcgccc ggttccggtg aaaaagcccg agccccagga ataaccccgc
     1021 gcccttgcca aaaaccccgc aaagccgcgc ttttgatgca attgcaggct tgaaaagtcc
     1081 cgccacttaa cgctttttac acagcgcagg ggcaaactgg cgcgcgaata ggcccccgac
     1141 tgatttgggg gccacaggga cggtgacggt gttcaacaac gaccgcgagc aggcatttgc
     1201 caagacggcg ctcgtcctga tgggcggtgc cggcgtcgcc gccacgcccg acaatttcga
     1261 actgttctat gcctatgcct cgggcgaaaa tcccgccatc accaaggtgc tgggtgcggc
     1321 catcgacgcc aagctgcctt tcacccccga actgctgatc gacctgcgcc agcgctgcct
     1381 gtcgggcgcg cgcgcggcgg tggcgatgga gtcggtgggc ggcaatatgg gcgcgctgat
     1441 cgacgacgtg ctgggcaagc tggccagctc ggcgcgcgaa gcggccgatt atcaggatac
     1501 cttgtcggcc gtcaccggcg agctgggcgg cgaacgcagc ccggccgacg tgcgcaagct
     1561 ggtggacggg ctgatcgccg ccacccgcgc catggagcag cgtgccaaaa gcctggaagg
     1621 cgaattgcag gcctcttcgc agcaggtcac cgaactgcgc accaagctgg cggacgtgcg
     1681 caaggaaagt atgaccgatc ccctgaccaa catcgccaac cgcaaggcgt tcgacgacgc
     1741 gatggaggag ggccgcaagg ccgccgccga cggcgaaaac gtctcactgc tgatgtgcga
     1801 catcgaccat ttcaagaaat tcaacgacac ctggggccac cagaccggcg atcaggttct
     1861 gcggctggtg gcgacctgcc tgtccgagaa cgtcaagggc cgcgacaccg cggcgcgcta
     1921 tggcggcgag gaattcgccg tgctgctgcg cggcaccggc atgaatgcgg ccacccatgt
     1981 ggccgaccag attcgcaaga cggtcgagac caagaaactg gtgaagaaat ccaccggcgg
     2041 catactgggc accatcacca tctcgatcgg cgtggcgcgc ttcgcctccg acgagacagt
     2101 ggagtcagtc atccgccgcg ccgatgcctg cctgtatggc gccaagcgca gcggccgcaa
     2161 tctggtggtc aacctggacg atacgcgtat ggccgcgctg gaaatcagcg ccgcctgatc
     2221 ggtttcgcgc tatgctgccg gccggttcgc ccgtgaggct tgcatgcacc agacattcga
     2281 tcgcgtccat ctgaccgcgc acggcaagac cgccgtcatc actctggacc atcccctcac
     2341 cgtgaatgcc ctgtccatcg ccatggtggg cggactgaat gcggcactgg acgcattgca
     2401 ggcgggctcc ttccgcgccc tggtcttgac cggtcaaggc cgcggcttct gctccggcgc
     2461 cgacatgaag gagcttgccg cccggcgggc ggagggcgcg ggccaagtgc tggaacgtct
     2521 gtatcacccc ctgttccggc gcctgcgcga cctggatatg ccgatcgtaa cggcggtgaa
     2581 cggcgcggct gtgggaatcg gcatgagcct ggcgctgatg ggtgatctga ccgtcgcggc
     2641 gcattcctcc tatttcctgc tgtccttcgc gcgcatcgga ctggtgccgg atggcggcgc
     2701 cacctggctg ctgccgcgcc tgatcggcct ggcgcgggc
//
LOCUS       DATMDK010000328         3002 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_3369377,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000328 DATMDK010000000
VERSION     DATMDK010000328.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3002)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3002)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3002
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3369377"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(223..723)
                     /gene="rimM"
                     /locus_tag="VNN98_06375"
     CDS             complement(223..723)
                     /gene="rimM"
                     /locus_tag="VNN98_06375"
                     /inference="COORDINATES: protein motif:HMM:TIGR02273.1"
                     /note="Essential for efficient processing of 16S rRNA;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_process: GO:0006364 - rRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome maturation factor RimM"
                     /protein_id="HWM61759.1"
                     /translation="MAAVIGAQGLKGEVKAKLFTAAPDALPRYGALHAKDGRIFTITA
                     FRPTRPGEAVLAFGEIRDRNAAEALKGTELFVTREALPAPEPDEFYHADLIGLEARDS
                     EGRMLGKVLALHNFGASDVIELTRPDGDSVHLAFTRETVPVINMADGYLVVAVPEDDE
                     GNDHVE"
     gene            complement(867..1106)
                     /gene="rpsP"
                     /locus_tag="VNN98_06380"
                     /pseudo
     CDS             complement(867..1106)
                     /gene="rpsP"
                     /locus_tag="VNN98_06380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003092643.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S16"
     gene            complement(1138..2511)
                     /gene="ffh"
                     /locus_tag="VNN98_06385"
     CDS             complement(1138..2511)
                     /gene="ffh"
                     /locus_tag="VNN98_06385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016290939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0048501 - signal recognition particle,
                     plasma membrane targeting [Evidence IEA];
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005048 - signal sequence binding
                     [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle protein"
                     /protein_id="HWM61760.1"
                     /translation="MFESLQSRLTGVFDKLRGRGALSEADVDAALAEVRTALIEADVA
                     LPVVTDFIGKVRPRAIGESVIRSVQPGQQVIKIVHDVLVETLGQENVALNIGSPPAPI
                     LMVGLQGSGKTTTSAKLGLLLQTKEKKRVLMASLDTTRPAAMEQLRVLGEQAGIATLP
                     IMAGQGPLDIAKRALASAKVGGYDAVILDTAGRQHVDEALMAEIASIKALVNPHEILL
                     VADALTGQDAVNIAKSFHDRVAVTGIILTRVDGDGRGGAALSMRSVTGAPIKFLGAGE
                     KLDALEAFHPARVASRILDMGDVVSLVEKASETLDKQAAEKFAAKMKKGTFDMNDLSS
                     QLNQMKKLGGMKGVLGMLPGVGKIKNQLDAAGLDDKILTRQEAIIQSMTKKERTDPDV
                     INGSRRKRIAAGAGVDVSDVNKLLKMHRQMADMMKKMGKGGRMPQMPGMGGMPGGLPP
                     GMFPGRR"
     gene            complement(2754..>3002)
                     /locus_tag="VNN98_06390"
     CDS             complement(2754..>3002)
                     /locus_tag="VNN98_06390"
                     /inference="COORDINATES: protein motif:HMM:NF018744.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1344 domain-containing protein"
                     /protein_id="HWM61761.1"
                     /translation="KKFMLAMVLIAVGSGPGWSLAHVSGSITSIDPKAHQIALDNGKT
                     YALQTDVNLANLAVGDRVTLNAEYKGKQQIIIKVTKTG"
BASE COUNT          521 a          937 c          937 g          607 t
ORIGIN      
        1 aaacatttcg gggaacagag tgaggacggt ggcggaccaa gcagtcatag ggttcaccct
       61 ccccttgagg gcggaggtag cgccagcgta ccgacatcga aattggattc gcgcaaacag
      121 cgcgaagaca atttcgggga ggggttttgg cacaaatcga acatgacccc tccccgaaat
      181 ttgctgcgca aatttcgacc ctccctcaag gggagggtca agttattcga catgatcatt
      241 cccctcatcg tcttccggta cagccaccac gagatagccg tcagccatat tgatcaccgg
      301 cactgtctcc ctggtgaagg ccagatgcac gctgtcgcca tcgggacgtg tcagttcgat
      361 cacgtcgctg gcgccgaaat tgtgcagggc cagaaccttg cccaacatcc gcccctcact
      421 gtcgcgcgct tccagtccga tcaggtcggc atggtagaat tcgtccggct ccggcgcagg
      481 caaggcttcg cgggtcacga acagttcggt gcccttcagc gcttcggccg cattgcgatc
      541 acgtatctcc ccaaacgcca gcaccgcctc gcccggcctg gtggggcgaa aggcggtgat
      601 ggtgaagata cggccatcct tggcgtgcag cgcgccatag cgcggcaggg catcgggcgc
      661 ggcggtgaag agcttggcct tcacctcgcc cttcagaccc tgcgcgccaa tgacggcggc
      721 catgagaatg tcgcgcggca acgctattcg gcggccggcg cttcggcggt ttcagcggcc
      781 ttggcattgg cggcggcgcg ttcctgcgcc ttcttcttgg gctgggcctt ctgcggattg
      841 ttgtggacgc gcgctttcac cagcccggca ttggccagga acttgtgtac gcggtcggac
      901 gccacggcgc ctttgccgat ccaggcctgg gcggattcca gattcagctt gaggcggtcg
      961 gcgtgatcgg acggcagcag cggattgtag aagccgatct tctcgataaa gcggccgtcg
     1021 cgcggattgc ggctgtcggc gatgacgatg ttgtagtgcg ggcgtttctt ggtgccgccg
     1081 cgggcgagac gaatgcgaag agccatgttc agttttcctt gtcgttaaag agctaaatca
     1141 acgccgtccc ggaaacattc cgggcggtaa tccaccgggc atgccgccca tgccgggcat
     1201 ttgcggcatg cggccgccct tgcccatttt cttcatcatg tccgccatct ggcggtgcat
     1261 tttcaaaagc ttgttgacgt cactgacgtc caccccggcg ccggcagcga tgcgcttgcg
     1321 ccgcgagccg ttgatcacat cgggatccgt gcgttccttc ttggtcatgg actggatgat
     1381 ggcttcctgg cgagtgagaa tcttgtcatc cagcccggcg gcatcgagct ggttcttgat
     1441 cttgcccacg cccggcagca tgcccaaaac gcccttcatg ccgcccagtt tcttcatctg
     1501 gttcagctgc gaagaaaggt cgttcatgtc gaacgtgcct ttcttcattt tggcggcgaa
     1561 cttctccgcc gcctgcttgt ccagggtctc actggccttc tccaccagcg acaccacatc
     1621 gcccatatcg aggatgcgcg acgcgacgcg ggcgggatga aaggcttcca gcgcatccag
     1681 cttttcgccg gcgcccagga atttgatcgg cgcgccggtg accgagcgca tcgagagcgc
     1741 agcgccgccg cggccgtcgc catcgacgcg ggtgaggata atgccggtga ccgcgaccct
     1801 gtcgtggaag gatttggcga tattgaccgc gtcctggccg gtcagcgcgt cggccaccag
     1861 caagatctca tgcggattga ccagcgcctt gatgctggcg atttcggcca tcagcgcttc
     1921 gtcgacatgc tggcggccag cggtgtcgag aatgacggcg tcatagccgc cgaccttggc
     1981 cgaggccaag gcgcgcttgg cgatgtccag cggcccctgg ccagccataa tgggaagcgt
     2041 ggcgatgccc gcctgttcgc ccaacacccg cagctgttcc atcgcggcgg ggcgcgtggt
     2101 gtccagcgac gccatcagca cgcgcttctt ttccttggtc tgcagcagca ggcccaattt
     2161 cgcggatgtc gtggtcttgc ccgagccctg caggccgacc atcaggatcg gggcaggcgg
     2221 cgagccgata ttcagggcca cattttcctg gcccagggtt tcgaccagca cgtcatggac
     2281 gatcttgatg acctgttggc cgggttggac cgagcggatg acgctttcgc cgatggcgcg
     2341 cgggcgcacc ttgccgatga agtccgtcac taccggcagc gccacatccg cctcgatcag
     2401 ggcggtgcgc acttcggcca acgcggcgtc gacatcggct tcgctgaggg cgccacggcc
     2461 gcgaagcttg tcgaaaacgc cggtcaggcg ggattgcagg ctttcaaaca aaactcagac
     2521 tctatctaat tgtctgattt tcttgcagaa aatcagacgg gccaagcagt tacgccccag
     2581 ggggcgcacc tgcgctgcct ggggtcgatc ccccgcgccg ggcgggggac cggaaaacct
     2641 atggctttcc ggaaaacggg cgggttttag gcccccctcc ccggcctgtc aaatagcgga
     2701 tacggcgcgt caaatgtcgc aaccggcgga aggccccggg gggcgggatg gcgtcagcca
     2761 gtcttggtca ccttgatgat tatctgctgc ttgcccttgt actcggcgtt gagcgtcacc
     2821 ctgtcaccca ccgccaggtt ggcgagattg acatcggtct gcagggcgta ggttttgccg
     2881 ttgtcgagcg cgatctgatg cgccttggga tcgatgctgg tgatgcttcc gctcacatgg
     2941 gccaagctcc aaccgggacc ggaacccaca gcgatcagga ccatcgcaag catgaacttt
     3001 tt
//
LOCUS       DATMDK010000329         4192 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2894611,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000329 DATMDK010000000
VERSION     DATMDK010000329.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 4192)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4192)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4192
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2894611"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..409
                     /locus_tag="VNN98_06395"
     CDS             <1..409
                     /locus_tag="VNN98_06395"
                     /EC_number="2.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024698.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="GNAT family protein"
                     /protein_id="HWM61762.1"
                     /translation="TKGSMLPFTVLDVDGKPAGMTTYMNVDAPNRRVEIGSTWYRASV
                     QRTALNTECKLMLLTHAFETLDCIAVEFRTHVLNTQSRRGIERLGAKLDGTLRSHSIM
                     PNGAIRDTVVYSIIAGEWPTVKAHLACQLAKPR"
     gene            439..1824
                     /gene="radA"
                     /locus_tag="VNN98_06400"
     CDS             439..1824
                     /gene="radA"
                     /locus_tag="VNN98_06400"
                     /inference="COORDINATES: protein motif:HMM:TIGR00416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RadA"
                     /protein_id="HWM61763.1"
                     /translation="MAKTASFVCQSCGATHAKWSGKCEACGGWNTITEEGAAPPLGSG
                     VARRTKGRKITLEDLKSEDAPPPRRPTGIAEFDRVTGGGLVPGSALLVGGDPGIGKST
                     IILQALGKYAQDGGHAIYISGEEAMAQVRMRAARMGLADAPLMLGAATNVEDILATLE
                     AGKPPGIVAIDSIQTLWTGALDAAPGTIAQVRTASFDLVRYAKASGAALLLVGHVTKD
                     RQIAGPKAVEHLVDAVLYFEGERGHHFRVLRAVKNRFGATDEIGVFEMTGKGLAEVAN
                     PSALFLGDRKSAAPGTAVFAGLEGTRPLLCEIQALVSPTAYGTPRRAVVGWDTGRLAM
                     ILAVLDARAGVGIGAADVYLNVAGGLKIGEPAADLAAAAALVSSFGGEPLPRDSVFFG
                     EISLSGDIRPVPQAEARLKEAAKLGFKTAFVPAGTRAEIAGMALTEITSVADLLRFAP
                     EPQPRRAKLES"
     gene            1821..2576
                     /locus_tag="VNN98_06405"
     CDS             1821..2576
                     /locus_tag="VNN98_06405"
                     /inference="COORDINATES: protein motif:HMM:NF014704.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CvpA family protein"
                     /protein_id="HWM61764.1"
                     /translation="MNLSVTFLDCLIVLIIVVSAGYAAWRGFLWETLTIFAWVAAAFG
                     CLYFGPYIIPLTRSLVGQAWLASLLAYAAVFLAVFIPFAFMSYRFSETVKHSPIGPLD
                     RAAGVAFGVVRGLVVVGLAYLAFTYFVPIRQQPHWVTEARLLPVVQSTADVLLSVVPD
                     RPGDYPYSPQHDVVRQAPPAVERASNPPDSTGISAGHDPMAELIRKNEKANRVPKTTR
                     EPVLQKSAAKPAKTYGASDRQELDKLVQTGGNR"
     gene            2645..4045
                     /gene="purF"
                     /locus_tag="VNN98_06410"
     CDS             2645..4045
                     /gene="purF"
                     /locus_tag="VNN98_06410"
                     /EC_number="2.4.2.14"
                     /inference="COORDINATES: protein motif:HMM:TIGR01134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004044 - amidophosphoribosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidophosphoribosyltransferase"
                     /protein_id="HWM61765.1"
                     /translation="MFGIFDHGDAGALSVLGLHSLQHRGQEAAGIVTYDEGHFIAERH
                     QGLVGDAFGRGSQAARNLKGRFAIGHNRYSTAGGSRASNIQPIFADLAGGGLAIAHNG
                     NLTNAHTLRQELVGQGAIFQSTSDTETIVHLTARSPKIRIVEKLIDALCQVEGAYSLV
                     ALTSKKVIGVRDPTGVRPLVMGNLDGATIFASETCALDIIGAEYVRDIKPGEMVVVDK
                     DGIHSHFPFKPQAHRFCVFEYIYFARPDSTLEGRNVYEARKNIGAVLAQEAPVVADMV
                     IPVPDSGVPAALGFANEAKIPFELGIIRNHYVGRTFIEPSDSIRHLGVRLKHNPNRAM
                     LKGKKVVLVDDSIVRGTTSKKIVAMVRDAGAAEVHFRVSSPPTTHSCFYGVDTPNTDD
                     LLAHKMDVEQMRRFIGADSLAFISMNGLYRAMGQAERVATAPKFCDACFTGDYPIALT
                     DISGGTRQLSLLADVA"
BASE COUNT          729 a         1349 c         1335 g          779 t
ORIGIN      
        1 gacgaaaggc tcgatgctgc cttttacggt gctggacgtg gacggcaagc ccgccggcat
       61 gaccacctat atgaacgtgg acgcacccaa ccggcgggtg gaaatcggct cgacctggta
      121 tcgcgcgtcg gtccagcgca ccgccctcaa caccgaatgc aagctgatgc ttttgactca
      181 cgcgttcgaa acgctggact gtatcgcggt ggaattccgc acccatgtgc tcaacaccca
      241 gagccggcgc ggcatcgaac ggctgggggc gaaactggat ggcaccctgc gcagccacag
      301 catcatgccg aacggcgcca tccgcgacac ggtggtctac agcattatcg cgggcgaatg
      361 gcccacggtg aaggcccatc tggcctgcca gctggccaaa ccgcgttgaa gtcttgacgc
      421 ctgtggtaaa ctagaatcat ggccaaaacc gcctccttcg tctgccagtc ctgcggcgcg
      481 acccatgcca aatggtcggg caagtgcgag gcctgcggcg gctggaacac catcaccgag
      541 gagggcgccg ccccgcctct cgggtcggga gtggcccgaa gaacaaaagg ccgcaagatc
      601 accctggaag atttgaagtc cgaagacgcg ccgccgccgc gccgccccac cggcatcgcc
      661 gagttcgacc gcgtcaccgg cggcgggctg gtgccgggtt cggcgcttct ggtcggcggc
      721 gatccgggca tcggcaagtc caccatcatt ctgcaggccc ttggcaagta cgcccaggac
      781 ggcggccatg cgatctatat ttccggtgag gaggcgatgg cgcaggtgcg catgcgcgcc
      841 gcccgcatgg gcctggccga cgcgccgctg atgctgggtg ccgccaccaa tgtggaagac
      901 attctcgcca ccctggaagc gggcaaaccg cccggcatcg tcgccatcga ttccatccag
      961 accttgtgga ccggggcgct ggatgcggcg ccgggcacca tcgcccaagt gcgcaccgcc
     1021 tcattcgatc tggtgcgcta tgccaaggca tcgggcgcgg cgctgctgct ggtgggccat
     1081 gtcaccaagg accgccagat cgccggaccc aaggcggtgg agcatctggt ggatgcggtg
     1141 ctctatttcg aaggcgagcg cggccatcat ttccgcgtgc tgcgggcggt gaagaaccgt
     1201 ttcggcgcca ccgacgagat cggcgtgttc gagatgaccg gcaaaggtct tgccgaagtc
     1261 gccaatccgt cggcgctgtt tttgggcgac cgcaaatctg ccgcgccggg cacggcggtg
     1321 ttcgccggtc tggaaggcac gcgcccgctt ttgtgcgaaa tccaggcgct ggtatcgccc
     1381 accgcttacg gcacgccgcg ccgcgctgtg gtgggctggg acaccgggcg gctggccatg
     1441 atcctggcgg tgctggacgc ccgcgccggg gttggaatcg gagcggcgga tgtttatctc
     1501 aacgtcgcgg ggggccttaa aatcggcgag cccgcggccg atctggcggc cgccgccgcg
     1561 cttgtttcat ccttcggtgg agaacccttg ccgcgcgact ctgtgttttt cggggagatc
     1621 agcctgtcgg gcgacatccg tcccgtcccg caggccgagg cccggctgaa agaggccgcc
     1681 aaactgggct tcaagaccgc ctttgtcccg gccggaacac gggcagagat tgccggaatg
     1741 gcgttaacgg agattaccag cgtcgccgac ctgctcagat ttgctcctga gccccagccc
     1801 cggcgtgcta aactcgaatc atgaacctgt cggtcacctt cctcgactgc ctgatcgtgc
     1861 tgatcatcgt ggtgtcggcg ggctatgccg cctggcgcgg ttttttgtgg gaaaccctga
     1921 ccattttcgc ctgggttgct gccgccttcg gctgtctcta tttcgggcct tatatcattc
     1981 ccttgacccg cagcctggtg ggccaggctt ggctggcctc gctcctggcc tatgccgccg
     2041 tcttcctggc ggtgttcatt cccttcgcct tcatgagcta tcgtttcagc gagaccgtga
     2101 agcactcccc catcgggccg ctggatcggg cggcgggtgt cgccttcggc gtggtgcggg
     2161 ggctggtggt ggtgggtttg gcttatctgg cctttaccta tttcgtcccc atccgccagc
     2221 aaccccattg ggtgaccgag gcgcggctgt tgccggtggt ccagtccacc gccgatgtgc
     2281 tgctgtcggt ggtgcctgat cgtcccggcg attatcctta cagtcctcag catgacgtgg
     2341 tgcgccaggc gccgcctgcg gtggagaggg cctccaatcc gcctgattcc acgggcatat
     2401 ccgcgggcca tgaccccatg gcagagctga tccgcaaaaa tgagaaggcc aatcgtgtcc
     2461 ccaaaaccac gcgggaaccg gtgctgcaga agagcgcagc caaacccgcg aaaacctatg
     2521 gcgccagcga tcgtcaggag ctagacaagc ttgtacagac cggcggaaac cgatgaccgg
     2581 ctttagcgat catatttggg acacttccca agaagatggg gacacgctgc atgaggaatg
     2641 cggcgtgttc ggcattttcg accatggcga tgccggtgcg ctgtcggtgc tgggcctgca
     2701 ttcgctgcag catcgcggcc aggaagcggc gggcatcgtc acctatgatg aaggtcattt
     2761 catcgccgaa cgccatcagg gcctggtggg cgacgccttc ggccgtggct cgcaagccgc
     2821 gcgcaatctc aagggccgct tcgccatcgg ccacaaccgc tattccaccg ccggtggcag
     2881 cagagcctcc aacatccagc cgatcttcgc cgacctggcg ggcggcggac tggccatcgc
     2941 ccataacggc aacctgacca acgcccatac tttgcgccag gagctggtgg ggcagggcgc
     3001 gatcttccaa tcgacctccg acaccgaaac catcgtgcac ctgacggcgc gcagtcccaa
     3061 gatccgcatc gtcgagaagc tgatcgacgc gctgtgccag gtggaaggcg cctattccct
     3121 ggtggcgctg accagcaaga aggtgatcgg cgtgcgcgac cccaccggcg tgcgcccgct
     3181 ggtgatgggc aatctggacg gggcgaccat cttcgccagc gagacctgcg cccttgacat
     3241 catcggcgcg gaatatgtgc gcgacatcaa gccgggcgag atggtggtgg tggacaagga
     3301 cggcatccac agccatttcc ccttcaagcc gcaggcgcac cgtttctgcg tcttcgaata
     3361 tatctatttc gcgcgccccg attccacgct ggaaggacgc aatgtctatg aggcgcgcaa
     3421 gaatatcggc gcggtactgg cgcaggaggc cccggtggtg gccgacatgg tgatcccggt
     3481 gccggactcg ggcgtgccgg cggcgctggg cttcgccaat gaagccaaga ttccgttcga
     3541 gttgggcatc atccgcaatc attatgtcgg acgcactttc attgagccgt ccgattccat
     3601 ccgccatctg ggggtgcggc tgaagcacaa tcccaatcgc gccatgctca agggcaagaa
     3661 ggttgtgctg gttgacgatt ccatcgtgcg cggcaccacc tccaagaaga tcgtggccat
     3721 ggtgcgcgat gccggcgcgg cagaagtgca tttccgggtg tcctcgccgc ccaccaccca
     3781 tagctgcttt tatggcgtgg acacgcccaa caccgacgat ctgttggccc acaagatgga
     3841 tgtcgagcag atgcgccggt tcatcggggc cgacagtctg gcctttattt ccatgaacgg
     3901 cctgtaccgc gccatgggcc aagctgaacg ggtcgccacg gcgccgaaat tctgcgacgc
     3961 ctgcttcacc ggcgattatc ccatcgccct gaccgacatc agcggcggca cgcggcaatt
     4021 gtcgctgctg gcggacgtgg cttagcaccc ccaagtgtca tggcccgcga ctgcgggcca
     4081 cccaggtgac acgacttctg tcgccacagg atagtcggcg ttccatttct tgagatattg
     4141 cactgcgccc aactgggtgg cccgcagtcg cgggccatga caatttggga tt
//
LOCUS       DATMDK010000330         3000 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1751530,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000330 DATMDK010000000
VERSION     DATMDK010000330.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3000)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3000)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3000
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1751530"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..491
                     /locus_tag="VNN98_06415"
     CDS             <1..491
                     /locus_tag="VNN98_06415"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61766.1"
                     /translation="PIPHYDVNSPQFGNPVHCAQPSNDGLIYVCDRTNNRIQLFKFDG
                     TFVKQYIMEPDTKGDGSVWEIAFSKDPQQKFMYIADGSNEKIHVYDRQSMKELYSFGG
                     GGRIPGQFYAVHSIVTDSKGNIFTTETYRGQRVQKFLYKGMVPLSSLVKKGAVGGSLI
                     NP"
     gene            complement(523..966)
                     /locus_tag="VNN98_06420"
     CDS             complement(523..966)
                     /locus_tag="VNN98_06420"
                     /inference="COORDINATES: protein motif:HMM:NF012264.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HWM61767.1"
                     /translation="MKKIMIGMAVAAVALGASAMALRAQTPARNVWDGVFTADQAAQG
                     KALFEAKCAICHGAELNGAEMAPPLAGGVFLGNWTGQSAGDLFTRIHTTMPANDPGSL
                     NNQQVAQALAYILSFNQFPAGATALPSDETALGQIAITAEKPAGK"
     gene            1199..2068
                     /locus_tag="VNN98_06425"
     CDS             1199..2068
                     /locus_tag="VNN98_06425"
                     /inference="COORDINATES: protein motif:HMM:NF018691.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ParA family protein"
                     /protein_id="HWM61768.1"
                     /translation="MYTIVAASQKGGSGKTTLSGHLAVEASRAGAGEIALIDTDPQGS
                     LAHWWNARQAPAPHFVKAGLPDLEEALAGLKRMGIKIAVIDTPPAITGSISRVVAHAD
                     LVIVPTRPSPHDLRAVGATVDIAERHGKPLIFVINAATARARITGESAVALSQHGTVA
                     PVTIHHRVDFAASMIDGRTVGEVTPSSQSAREISDLWVYIQERLSRLMHDPSLLPEIK
                     PDHLAINSLLSSGMEGPVDNLPPVLEMPLYDGPERRIGERRMLLEPRAHERRVFGRRA
                     TDQTPSGAQWGIK"
     gene            2065..2457
                     /locus_tag="VNN98_06430"
     CDS             2065..2457
                     /locus_tag="VNN98_06430"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61769.1"
                     /translation="MSSPKFASITASLLARKGEAQPWNSLGNSLGNSLGNSLGNTAQE
                     AEKVPLAWRTPLAVAAPPPSPPAKDKSCAVRMSAHDYERLGILAVKSCVSRQQLLKDA
                     LAQFLAGKARDYGCACLGACNRDCGHKG"
     gene            complement(2688..>3000)
                     /locus_tag="VNN98_06435"
     CDS             complement(2688..>3000)
                     /locus_tag="VNN98_06435"
                     /inference="COORDINATES: protein motif:HMM:NF017935.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF983 domain-containing protein"
                     /protein_id="HWM61770.1"
                     /translation="PCCGQGKLMKSYLKPVENCATCGESFGQIRADDAAPWLTIIVVG
                     HIFLPLAFLVNVDWMPVWAAMGMWAACFAGLALAILPRAKMLFIAILWQTRAPGYEVA
                     R"
BASE COUNT          569 a          950 c          936 g          545 t
ORIGIN      
        1 atccgatccc gcattacgat gtgaattcgc cgcagttcgg caatccggtg cactgcgccc
       61 agccctcgaa tgacggcctg atctatgtct gcgaccgcac caacaaccgc atccagctgt
      121 tcaaattcga cggcaccttt gtgaagcaat atatcatgga gccggataca aagggcgatg
      181 gctcggtctg ggagattgcc ttctcaaagg acccgcagca gaagttcatg tacatcgccg
      241 acggctcgaa cgaaaaaatc cacgtctatg accgccaatc gatgaaagaa ctttattcct
      301 tcggcggcgg cggacgtatc ccgggccagt tctatgcggt gcacagcatc gtcaccgact
      361 ccaagggcaa catcttcacc accgagacct atcgcggcca gcgggtgcag aagttcctct
      421 ataagggcat ggtgcccttg agcagcttgg tgaaaaaggg cgcggtcggc ggcagcctga
      481 tcaacccgta aaagccgtac gccgccggaa cgccgggccg ggctatttgc ccgccggctt
      541 ttcggcggtg atggcgatct ggcccagagc cgtctcgtca cttggcagcg ccgtggcgcc
      601 tgccgggaat tggttgaagg acaggatata agccaaagcc tgcgccacct gctggttgtt
      661 caggctgcct ggatcgttgg ccggcatggt ggtgtggatg cgggtgaaca ggtcgcccgc
      721 cgattggccg gtccagttgc ccaggaacac gccgcccgcc agcggcggcg ccatttccgc
      781 gccgttcagt tcggcgccat ggcagatggc gcacttggcc tcgaacagcg ccttgccctg
      841 tgccgcctgg tcggcggtga atacgccgtc ccagacattg cgcgccggtg tctgcgccct
      901 aagcgccatc gccgacgcac ccagggccac ggccgctacg gccatgccga tcatgatctt
      961 tttcattttc cactcctcaa gcgcgcccgc cgcagctgcg gtttataggg gtcaaccgcg
     1021 ccgccatcca gaggtcagat acgtggcatt ttcgaggcgt tggcgggcct gcggcccctc
     1081 caaacgcagc ccttcccgcg caattcctgt cttattcgag acaaattgcg tcccgccgtt
     1141 tcacggggac gaaacgggct tggcccgatg ctggcccatc aaaaccaagg gtaccagcat
     1201 gtacaccatc gtcgctgctt cccagaaagg cgggtctggc aagaccacgc tgtccggtca
     1261 tttggcggtg gaggccagcc gcgccggcgc cggtgagatc gcgctgatcg acaccgaccc
     1321 gcaaggcagc ctggcgcatt ggtggaatgc gcgtcaggcg ccggcgccgc atttcgtcaa
     1381 ggcgggactg ccggacctgg aagaggctct cgccggcctg aagcgcatgg gtatcaagat
     1441 cgcggtgatc gacacgccgc ccgccatcac ggggtccatt tcccgcgtgg tggcgcatgc
     1501 cgatctcgta atcgtgccca cccgtcccag tccgcacgat ctgcgcgcgg tgggggcaac
     1561 ggtggatatc gccgagcgtc acggcaagcc gctgatcttt gttatcaacg ccgccacggc
     1621 gcgcgcccgc atcaccggcg aatccgccgt ggctctgtcg cagcacggca ccgtggcacc
     1681 ggtcaccatc catcaccggg tggatttcgc cgccagcatg atcgacggcc gtaccgtggg
     1741 cgaagtgacg ccgtcgtcgc agtcggcccg ggagatcagt gatctgtggg tttatattca
     1801 ggagcggttg tcgcgtctca tgcatgaccc ctcgctgctg cccgagatca agccggacca
     1861 tctggcgatc aattcgctgc tgtcgtccgg catggaaggc ccggtggaca acctgccgcc
     1921 ggtgttggag atgccgcttt acgatgggcc ggaacggcgc atcggcgagc ggcgtatgct
     1981 gctggagccg cgcgcccatg aacggcgcgt ctttggccgg cgcgcaacag atcagacgcc
     2041 ttcaggggcg caatggggga tcaaatgagc agtccgaaat ttgcgtccat caccgccagt
     2101 cttctggcgc gcaagggcga ggcgcaacct tggaatagtc ttgggaatag ccttggcaat
     2161 agcctgggga acagcttggg gaatacggca caggaggcgg agaaagtccc gctggcctgg
     2221 cgtaccccgc tggcggtggc ggcccccccg ccgtcaccgc cggccaagga caagtcctgc
     2281 gccgtgcgca tgtcggcgca tgattacgag cggctgggaa tcctggcggt caaaagctgt
     2341 gtctcgcgcc agcaattgct caaggatgcg ctggcgcaat ttctggccgg caaggccagg
     2401 gattatggct gtgcatgtct gggcgcctgc aaccgcgatt gcggccacaa aggataatcg
     2461 gcgagagcca tccgtgacat acccacccat tgttacggcc cggaaatccg ggccgcccag
     2521 gtgacgccag tcgcggatgt cgaaaggagg tcgcagccaa agccttctat attgaggcta
     2581 tcccacctgg gtggcccgca ttcgcgggcc atgacactta gattgcaatt tcgtaagagg
     2641 gcaaggcgaa atagtcagac cagttcgatc ggctgatacc ctttatttta tcgggctact
     2701 tcgtaacccg gcgcgcgggt ctgccacagg atggcgatga acagcatctt ggcgcgcggc
     2761 aggatggcca gcgccagccc agcgaaacag gccgcccaca ttcccatcgc ggcccagacc
     2821 ggcatccaat ccacattcac cagaaaggcg aggggcagga agatatggcc gaccacaatg
     2881 atggtcagcc agggcgcagc atcgtcggcg cggatctggc cgaagctttc gccgcaagtc
     2941 gcgcaattct ctaccggctt cagatagctc ttcatcagct tgccctggcc gcagcagggg
//
LOCUS       DATMDK010000331         3900 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_626417,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000331 DATMDK010000000
VERSION     DATMDK010000331.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3900)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3900)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3900
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_626417"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1020)
                     /locus_tag="VNN98_06440"
     CDS             complement(<1..1020)
                     /locus_tag="VNN98_06440"
                     /EC_number="3.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012257.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030551 - cyclic nucleotide binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic nucleotide-binding and patatin-like
                     phospholipase domain-containing protein"
                     /protein_id="HWM61771.1"
                     /translation="MAFLSSFRIGQQTVYPEELHERLKSFALLENVGDAALRNLLAEA
                     NWFALPGGTLLDRDGENNAALFLVITGSLGVFVSDEQGQRQLVAHIPAGETVGEMSLI
                     AGSSHHSAQLVALRDTELLRISPDGFEALIARHPRVMMNLMQMLVKRLKEANRGRFNK
                     ARPKTFAIVPLQEGLSEVPIAQRLASALAGMGIRAAVLDSNAGDQTAEWFNSFEQAHD
                     VVFYRGDAPDSPWTHLCLRQADRIFLLARANQPLPLAPLDLPAFKERASGLPELLLLH
                     PDGASAVLPEHFSVRGGLFQSHYHLRAGHQADVARVARFIAGRAVGLVLAGGGARGFA
                     HIGIIK"
     gene            complement(1035..1817)
                     /locus_tag="VNN98_06445"
     CDS             complement(1035..1817)
                     /locus_tag="VNN98_06445"
                     /inference="COORDINATES: protein motif:HMM:NF024950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HWM61772.1"
                     /translation="MTQDIFRLDGKTAFVSGSRGHLGAAMTRALCAAGAHVIVNGRDA
                     VALDGFAADLKAQGFSVQAAAFDAHDIPALRAFFGGRKRLDVLVNNVGLMLGKSFAAL
                     TAADFTATYAATVTSAFESVRAALPALRAAVAASGDASIVNIASIYGQVSPDGRLYDD
                     RSQQSPFHYGPAKAGLIQLSRHLAAELGPERIRVNTLVPGTFPQPGKMPPGLEDRLAA
                     RTMLGRIGVPREIGGPLLFLASPASSFVTGACLNVDGGWTAW"
     gene            2129..3343
                     /locus_tag="VNN98_06450"
     CDS             2129..3343
                     /locus_tag="VNN98_06450"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61773.1"
                     /translation="MTSKFLFAALTAGLLLGAAPGAMAADAPKPPKITSAVLKNLSAA
                     QTANNKKDYPTALAALEEAKKVSDRTPYDDYMINRFAMGVHVGMGDMTAADVDAEAAA
                     DVDPALVPDADKIQVYLPALKLAVYAKHYDKAMKYSKLYMATTPPPTGADLALATQAL
                     YLGGDYAGATAIAQKGIDAATAAGQKPVRSDLDIVMASQVKQKDEVGAEKTLEMLVAT
                     YNEPDDWNQIMGVALTTKGMRDIDYVYMGRLMLVNGGKISATDASLVGSVANKSALYG
                     DAEAMQKVGGPAPDAREAADKKSIPAQIAAEAKQGGEYAVKTAEALYGYGMYPEAEAA
                     ARLAQAKGGAKDPTEAPMVIGMAQAAQGKFADAATTFAGITAPNPASARVVRLWGYYV
                     KTKANPATAAAK"
     gene            3444..>3900
                     /locus_tag="VNN98_06455"
     CDS             3444..>3900
                     /locus_tag="VNN98_06455"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61774.1"
                     /translation="MNLVVGFAPFILFTILSRLSVDLALWVAFAAAFVVTIRDFVESP
                     SLRLLDAGSFALFALLALGRGFLDPNLSLAAARFVAALSLFLLLGLPLALKRPFSADY
                     ARLDEREAGWPPALFLRVNMLVSGAWVMAFAIMAVADGAVAFDAGLPLYG"
BASE COUNT          701 a         1291 c         1259 g          649 t
ORIGIN      
        1 cttgatgatg ccgatatggg cgaagccccg cgccccgccg cccgccagca ccagccccac
       61 ggcgcggccg gcaatgaagc gcgccacccg cgccacgtcc gcctgatgcc cggcgcgcaa
      121 gtgataatgg ctttggaaca ggccgccgcg caccgagaaa tgctccggca acacagcgct
      181 ggcgccatcg ggatgcagca gcagcagttc gggcaggccg gacgcgcgct ccttgaaggc
      241 cggcaggtcc agcggcgcca gcggcagcgg ctggttggcg cgggccagaa ggaaaatgcg
      301 gtcggcctgg cgcaggcaca gatgcgtcca gggactgtcg ggcgcatcgc cgcggtagaa
      361 cacgacgtca tgggcctgct cgaaactgtt gaaccattcc gccgtctggt cgccggcatt
      421 ggagtccagc accgcggcgc ggatgcccat gccggccagc gcgcttgcca ggcgctgggc
      481 gatgggcacc tccgacaggc cttcctgcaa tggcacgatg gcgaaagtct tgggccgtgc
      541 cttgttgaag cggccgcgat tggcctcctt cagccgcttc accagcatct gcatcaggtt
      601 catcatcacc cggggatggc gggcgatcag cgcctcgaag ccgtcaggac tgatgcgcag
      661 cagctcggtg tcgcgcagcg ccaccagctg ggcggaatga tggctggagc cggcgatcag
      721 cgacatctcg cccaccgtct cgcccgccgg gatatgcgcc accagttggc gctggccctg
      781 ctcgtcggac acgaacacgc ccaggctgcc ggtgatcacc aggaacaaag cggcgttgtt
      841 ctcgccgtcg cggtccagca aagtgccgcc gggaagggcg aaccagttgg cctcggccag
      901 caggttgcgc agcgccgcgt cgccgacatt ctccagcagc gcgaagctct tcagccgctc
      961 gtgcagctct tcggggtaga cggtctgctg gcctatgcgg aaagaagaga ggaacgccat
     1021 gcgcatcctt tacctcacca ggcggtccag ccgccatcga cattgaggca tgcgcccgtg
     1081 acaaaactcg atgccgggct ggccaggaac agcaacggcc cgccgatttc ccgcggcacc
     1141 ccgatccggc ccagcatggt cctggccgcc aggcggtctt ccagccccgg cggcatcttg
     1201 ccgggctggg ggaacgtccc tggtacaagc gtgttgacgc gaattctttc tggccccagt
     1261 tcggcggcaa gatggcggct gagctgaatc aaccccgcct tggcggggcc gtaatggaac
     1321 ggactctgct ggctgcgatc gtcataaaga cggccatcgg gcgagacctg accgtagatg
     1381 gacgcgatat tgacgatgct ggcatcgccc gacgccgcca ccgcggcgcg caaggccggc
     1441 aaggcggcgc gcaccgattc gaaggcggag gtgaccgtgg ccgcgtaagt ggcggtgaaa
     1501 tcggcggcgg tcagcgccgc gaagctcttg cccagcatca gccccacgtt attgaccagc
     1561 acgtccagcc gtttgcggcc gccgaagaat gcgcgcagcg cgggaatatc gtgggcatcg
     1621 aaggccgccg cctgaaccga aaaaccctgg gctttgagat cggcggcgaa gccgtccagc
     1681 gccaccgcgt cgcggccatt gacgatgaca tgggcgcccg ccgcgcatag cgcccgggtc
     1741 atggccgcgc ccagatggcc gcgactgccc gaaacaaagg cggttttgcc gtccagacgg
     1801 aaaatatcct gcgtcatggt ggatgcccga agtcgagcag ccaacctgcc agcgcagggt
     1861 aaacaactgt ttacgatgct tgcccctccg gccttcgctg gcccgagtgc cagctacggc
     1921 cacctccccg tgcaagcgcc tttggcgcgc cggggaggtc cgcaacttgc tgcagcgcag
     1981 caaagccggg tcagttcgcc ttattggaaa cagcgctccg ccacagtaaa gttgcaaata
     2041 cgctcacaat gggacaccca acaggggctt cttcgccggc cgccattctt ccgaagatgg
     2101 cgcccgcatt acaaagggac gactttccat gaccagcaaa tttcttttcg ccgccctgac
     2161 ggcgggcctt ctgcttggcg ccgcgccggg cgcgatggcg gccgatgccc ccaagccgcc
     2221 gaaaatcacc tccgcggttc tcaagaacct ctcggcggcc cagaccgcca acaacaagaa
     2281 agactatccc accgccctcg ccgcgctcga ggaggccaaa aaggtgtccg accgtacgcc
     2341 ttatgacgac tatatgatca accgcttcgc catgggcgtc catgtcggca tgggtgacat
     2401 gaccgccgcc gatgtggatg cggaagctgc agccgacgtt gatccggccc tcgttcccga
     2461 cgccgacaag atccaggttt acttgcccgc gttgaagctg gcggtctatg ccaagcatta
     2521 cgacaaggcc atgaaatact ccaagctgta catggcgacc acgccgccac ccaccggcgc
     2581 cgacttggcg ttggcgacac aggctttgta tctgggcggt gattatgccg gcgccaccgc
     2641 catcgctcaa aagggcatcg acgccgccac cgccgccggc caaaagccgg tgcgcagcga
     2701 cctcgacatc gtgatggcct cgcaggtcaa gcagaaggat gaagtcggcg ccgaaaagac
     2761 cctggaaatg ctggtcgcca cctacaacga gccggacgac tggaaccaga tcatgggcgt
     2821 ggcgctgacc accaagggca tgcgcgacat cgactatgtc tatatgggcc ggctgatgct
     2881 ggtgaatggc ggcaagatca gtgcgacgga cgcctcgctg gtcggcagcg tcgccaacaa
     2941 gtcggctttg tatggcgatg ccgaagcgat gcagaaagtg ggcggaccgg cgccggacgc
     3001 ccgcgaggcg gcggacaaga agtccattcc cgcccagatc gccgcggaag ccaagcaagg
     3061 cggcgaatat gccgtgaaaa ccgccgaagc gctttacggc tatggcatgt atcccgaagc
     3121 cgaagccgcg gcacgcctgg cccaggccaa gggcggggcg aaagatccga ccgaagcccc
     3181 catggtgatc ggcatggccc aggcggcgca gggaaaattt gccgacgccg caaccacctt
     3241 cgccggcatc acggcgccca atccggcctc ggcccgcgtg gtgcgcctgt ggggttacta
     3301 tgtaaagacc aaggcgaatc cggcaaccgc cgccgccaag taacggtgtt ccagatcccg
     3361 gggcgcgggt cctccgcgcc ccgtactttt tgaaacgggg ccagggtcag tcgcttcgca
     3421 tctgtgtcct gtgaggcccc gatatgaatc ttgttgtcgg cttcgcgccg ttcatcctgt
     3481 tcacgatcct gtcgcgcctg tcggttgacc tggcgttgtg ggtggcgttc gccgccgctt
     3541 ttgtcgtcac cattcgcgat ttcgtggaaa gtcccagcct gcggctgctg gatgccggca
     3601 gcttcgcgct gttcgccctg ttggcgctgg ggcgcggctt tctcgatccc aacctgtcgc
     3661 tggcggcggc gcgcttcgtt gccgccctgt cattgttcct gctgctggga ttgccgctgg
     3721 cgctgaagcg tcccttttcg gcggactatg cgcggctgga cgagcgtgag gcgggatggc
     3781 cgcccgcttt gttcctgcgg gtgaacatgc tggtctccgg tgcctgggtg atggcctttg
     3841 ccatcatggc cgttgccgac ggcgcggtgg ccttcgatgc gggattgccg ctttatggca
//
LOCUS       DATMDK010000332         2331 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1533312,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000332 DATMDK010000000
VERSION     DATMDK010000332.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2331)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2331)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2331
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1533312"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            48..950
                     /locus_tag="VNN98_06460"
     CDS             48..950
                     /locus_tag="VNN98_06460"
                     /inference="COORDINATES: protein motif:HMM:NF040043.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6282 family protein"
                     /protein_id="HWM61775.1"
                     /translation="MKKFTILAALLFVSPAAAQDMISLKGAIDIHVHQDPDSAPRAID
                     ADDVARQAKAAGMRAVVLKNHWEDTASLAYMVRKMVPGIDVFGGITQDLAVGGINIEA
                     VKHMADMKAGYGRIVWLPTFDAQNQVADKGPEVKVSENGKLLPSVLALLDYIASRKQL
                     ALETGHVSAQEALMVIKEARARGIEHVVVTHGMTGPTNLSVPQAQEAARMGATIELVY
                     GATLEKGSKVTLKDYADWIRAVGPAHCILSTDLGGARPYPRPMPTQGMLEYMTGLNKL
                     GISVADINLMAKTNPAIVLGLDAK"
     gene            940..1728
                     /locus_tag="VNN98_06465"
     CDS             940..1728
                     /locus_tag="VNN98_06465"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61776.1"
                     /translation="MRNKHLLILAALLLASPAAAQQHRQPEDHLEPEGAILGGTAFSA
                     SYDMLVRDLLHDAYDMSVDVRMVALPSFVPEYAVGLRSFETTGTGAVKRIARGAPYRI
                     FVLSPQAQIWTYESISSLKRGQEQAFDKIGNSRQQAAITELEAKVPTNPHDLKIDRCE
                     ADISGVLGDRIVQLWGKMLLATRYSAQYSAGADGVSYHFSASVPKAGMLAGQVWTPDR
                     NSATSTLVTLADAMRAVCEKKATMTELDRLTTELEQRLRKGEGR"
     gene            1725..>2331
                     /locus_tag="VNN98_06470"
     CDS             1725..>2331
                     /locus_tag="VNN98_06470"
                     /inference="COORDINATES: protein motif:HMM:NF019157.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tannase/feruloyl esterase family alpha/beta
                     hydrolase"
                     /protein_id="HWM61777.1"
                     /translation="MKILAWGTLAALAMAMGVQAQPKAAACDDLVNLKLPHVTITEAT
                     MAASGAGSYCKVLGTARPTSDSDIRFEVMIPENWNGRYLQVGNGGFAGVIPERNMLAP
                     LALGYAVAGTDDGHEDTINTDASWALNHPQKAIDFGYRAIKETTDAAKAIIAAYKGAA
                     PRWSYFQGCSDGGREALMEAQRYPGDFNGIVAGDPANHWTHL"
BASE COUNT          494 a          739 c          696 g          402 t
ORIGIN      
        1 tcatctgggt ggcccgcatt cgcgggccat gacacatcgg ggtggccatg aagaagttca
       61 caattcttgc ggccttgctg ttcgtctcac ctgccgccgc gcaagacatg atctcgctga
      121 aaggcgcgat cgacattcat gtccatcaag accccgacag cgccccgcgc gccatcgacg
      181 ccgacgatgt ggcgcggcaa gccaaggcgg ccggcatgcg cgccgtggtg ctgaagaacc
      241 attgggagga caccgcctcc ctcgcctata tggtgcgcaa gatggtgccg ggcatcgacg
      301 tgttcggcgg catcacccag gacctggcgg tcggcggcat caatatcgaa gccgtcaagc
      361 acatggcgga catgaaagcc ggctatggcc gcatcgtctg gttgcccacc ttcgacgccc
      421 agaaccaggt ggcggacaaa ggcccggaag tgaaggtgtc ggaaaacggc aagctgctgc
      481 cgtccgtatt ggcgctgctg gactatatcg ccagccgcaa gcaactggcg ctggaaaccg
      541 gccatgtctc ggcgcaagaa gccctgatgg tgatcaagga ggcccgggcc cgcggcatcg
      601 agcatgtggt ggtgactcac ggcatgaccg gccccaccaa tctctccgtg ccccaggcgc
      661 aggaagccgc ccgcatgggc gccacaatcg agttggtcta tggcgccacg ctggaaaaag
      721 gcagcaaggt gactttgaag gattatgccg attggatccg cgccgtgggg ccagcgcatt
      781 gcatcctgtc gacagacctg ggcggcgccc gcccctatcc caggccgatg ccgacgcaag
      841 gcatgctgga gtacatgacc ggactcaaca agctcggcat ctccgtcgcc gacatcaacc
      901 tgatggccaa gaccaatccg gctatcgtgc tggggttgga tgcgaaataa gcaccttctg
      961 atcctggccg ccttattgct tgcgagccca gcggctgcgc agcaacaccg gcaacccgaa
     1021 gatcatttgg agcctgaagg ggcaattctg ggcggcacgg ctttttcggc cagttacgac
     1081 atgctggtgc gcgacctgtt gcacgacgct tacgacatga gcgtcgatgt gcgcatggtg
     1141 gcgctgccgt cctttgttcc ggaatatgcg gtgggtttgc gcagcttcga gacaaccggc
     1201 accggcgcag tcaagagaat cgccagaggc gcgccctatc gaatttttgt tctatcgccc
     1261 caagcccaga tatggaccta cgaaagcatt tcatccctga aacgcggcca ggaacaagct
     1321 tttgacaaga tcggaaacag cagacagcag gcggcgatca ccgaactgga ggccaaagtg
     1381 cctaccaatc cccatgatct gaaaatcgac cgctgcgagg cagatatcag cggcgtcctg
     1441 ggtgaccgca tcgtgcaatt gtggggcaaa atgctgctgg ccactcgcta ttccgcccaa
     1501 tattccgccg gtgccgacgg tgtgagctat catttcagcg cttccgtccc gaaggccggc
     1561 atgttggccg gccaggtctg gacacccgat cgcaactccg ccaccagcac cctggtcaca
     1621 ctggccgatg cgatgcgcgc agtctgcgaa aagaaagcga caatgaccga actcgatcgg
     1681 ctcaccaccg aactcgaaca aaggctgcgg aagggagaag gacgatgaaa atccttgcct
     1741 ggggcacact agccgcgctg gccatggcga tgggcgtgca ggcccagccc aaagccgccg
     1801 cctgcgatga cctggtcaat ctcaagctac cgcatgtcac catcaccgaa gccaccatgg
     1861 ccgcgagcgg cgcgggcagt tattgcaagg ttctgggcac cgcccggccg acatccgatt
     1921 ccgatatccg ctttgaagtg atgatccccg aaaactggaa cggccgctat ctgcaagtcg
     1981 gcaatggcgg cttcgccggc gtcattcccg aacgcaacat gctggcgccc ttggcactgg
     2041 gctatgccgt cgccggcacc gatgacggcc atgaagacac gatcaatacc gacgccagct
     2101 gggcgctaaa ccatccgcaa aaggcgatcg acttcggcta tcgcgccatc aaggaaacca
     2161 ctgacgccgc caaggccatc atcgccgcct ataagggcgc cgcaccgcgc tggtcctatt
     2221 ttcagggctg ttccgacggc gggcgcgagg cgctgatgga agcccagcgc tatccgggcg
     2281 actttaacgg tatcgtcgcg ggcgatcccg ccaatcactg gacccatctt c
//
LOCUS       DATMDK010000333         2229 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1071168,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000333 DATMDK010000000
VERSION     DATMDK010000333.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2229)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2229)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2229
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1071168"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(190..1476)
                     /gene="pyrC"
                     /locus_tag="VNN98_06475"
     CDS             complement(190..1476)
                     /gene="pyrC"
                     /locus_tag="VNN98_06475"
                     /EC_number="3.5.2.3"
                     /inference="COORDINATES: protein motif:HMM:TIGR00857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004151 - dihydroorotase activity
                     [Evidence IEA];
                     GO_process: GO:0009220 - pyrimidine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotase"
                     /protein_id="HWM61778.1"
                     /translation="MKRIAFRNARLIDPASGLDVKGGLLVENGRIADIGPRLFNDAEA
                     GDPEVIDCRGLVLAPGLIDCRVFTGEPGAEHRESLESASAAAAAGGVTSIIVMPNTDP
                     VIDEPSLVDFLLRRAAATAKVRVLPCAALTKGLLGETMTEIGLLQEAGAIAFTDGDRS
                     IANARVLRRALSYAATFNALVISHAEDPELVKGASVTEGEFATRLGLPAAPAIAEAMM
                     VERDIRLMELTGARVHFGQISTRDSLDVIAAAKARGLPVTCGVAAHHLSLNELDVGAY
                     YTFRKVRPPLRSEADRAAMMEGVASGVIDVIVSSHEPQGADTKRQPFATAAAGTVGLE
                     TLLPAALSLVHDGRASLSHVLAAMTAAPARIFGLGSGTLAKGAPADLVLLDEGEPFVV
                     DAEKLHSRSRNTAFDGRKFQGRAQKAFVGGELVFSR"
     gene            complement(1473..>2229)
                     /locus_tag="VNN98_06480"
     CDS             complement(1473..>2229)
                     /locus_tag="VNN98_06480"
                     /EC_number="2.1.3.2"
                     /inference="COORDINATES: protein motif:HMM:TIGR00670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004070 - aspartate carbamoyltransferase
                     activity [Evidence IEA];
                     GO_function: GO:0016597 - amino acid binding [Evidence
                     IEA];
                     GO_process: GO:0006207 - 'de novo' pyrimidine nucleobase
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0006520 - amino acid metabolic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="aspartate carbamoyltransferase catalytic
                     subunit"
                     /protein_id="HWM61779.1"
                     /translation="RTQSSFELAGKRLGADVMNMSVKTSSVSKGETLIDTASTLNAMR
                     PDILVVRHQDAGAAELLSRKLDCSVINAGDGAHEHPTQALLDALTIRRHRGNLEGLVV
                     AICGDVLHSRVARSNLLLLSMMGAQVRLVAPRTLLPCQAERFGVEVHTDMKSGLAGAD
                     IVMMLRLQVERMAGAFVPSIREYFRFYGLDREKLSVAKPGALVMHPGPMNRGVEIASD
                     IADDALVSLIAEQVEMGVAIRMAILDALSRGMT"
BASE COUNT          398 a          743 c          720 g          368 t
ORIGIN      
        1 gcctctcgcg acctggggga ctgcggactc tcacccgcca ccgcaccagc caatatagcc
       61 gatccggaca aatccaagtt acaaggggac ccaggtgcaa agactggctc cggtctaacc
      121 acctgggttc ccttcccctc gcaaagacta cgtctttgct cggccgggaa tgacaagttg
      181 ggataaaatc tatcggctga acaccaactc gccgccgaca aaggccttct gcgcccggcc
      241 ctggaatttg cgtccgtcga aagcggtgtt gcgggagcgg gagtgcagtt tttcggcatc
      301 cactacgaag ggctcgcctt cgtccagcag caccagatcg gccggcgcgc ccttggccaa
      361 tgtgccggac cccagcccga agatgcgggc cggggcggcg gtcatcgccg ccagtacatg
      421 cgaaaggctg gcgcggccgt catgcaccag cgacagagcg gcgggcagca aggtctccag
      481 ccccaccgtg ccggcggcgg cggtggcgaa aggctggcgc ttggtgtcgg cgccttgcgg
      541 ctcatggctg gacacgatca catcgatcac cccgctggcc acgccttcca tcatggcggc
      601 gcggtcggct tcgctgcgca gcggcgggcg caccttgcgg aaggtgtagt aggcgccgac
      661 atccagctcg ttcaagctga gatggtgggc ggcgacgccg caagtgaccg gcaggccgcg
      721 cgccttggcg gcggcgatca cgtccaggct gtcgcgggtg gaaatctggc cgaaatgcac
      781 ccgcgcgccg gtcagctcca tcagcctgat gtcgcgctcc accatcatgg cttcggcgat
      841 ggccggcgct gcgggcaggc ccagcctggt ggcgaattca ccttcggtga cgctggcgcc
      901 cttcaccagt tccgggtcct cggcatggga gatcaccagc gcgttgaaag tggcggcata
      961 ggacagagcg cggcgtagca cccgtgcatt ggcgatcgag cggtcgccgt ctgtaaatgc
     1021 aatagctcca gcttcttgaa gaagtccgat ctcggtcatg gtctcgccca gcaagccttt
     1081 ggtcagggcg gcgcagggca gcacccgcac tttggcggtg gcggcggcgc ggcgcagcag
     1141 gaaatccacc agcgagggtt cgtcaatcac cggatcggtg ttgggcatga cgatgatgga
     1201 ggtgacaccg cccgccgccg ccgccgcgct ggccgattcc aggctttcgc gatgttccgc
     1261 accgggctcg ccggtgaaga cgcggcaatc gatcaacccg ggcgccagca ccagcccccg
     1321 gcagtcgatc acttcgggat cgccggcttc cgcatcgttg aacaggcgcg gcccgatatc
     1381 ggcgatgcgg ccattctcca ccagcaagcc gcccttgacg tccagcccgc tggccggatc
     1441 gatcaggcgc gcgttgcgga aggcgatgcg cttcatgtca tgcccctcga aagggcatcc
     1501 agaatggcca tgcggatggc gacgcccatt tccacctgtt cggcgatcag gctgaccagc
     1561 gcgtcatcgg cgatgtcgct ggcgatctcc accccccggt tcatggggcc gggatgcatc
     1621 accagcgcgc cgggcttggc aacggacagt ttttcgcggt ccaggccata gaagcggaaa
     1681 tattcccgga tcgaaggcac gaaggccccc gccatgcgct ccacctgcag ccgcagcatc
     1741 atcacaatat cggcgccggc caacccgctt ttcatgtcgg tatggacttc caccccgaag
     1801 cgttccgcct ggcaaggcaa aagtgtgcgc ggcgccacca ggcgcacctg cgcgcccatc
     1861 atggagagca gcagcaggtt ggagcgcgcc acacgcgaat gcagcacgtc gccgcagatc
     1921 gccaccacca ggccttcgag attgccgcga tggcggcgga tggtcagcgc gtccagcagc
     1981 gcctgggtgg gatgttcatg ggcgccatcg ccggcattaa tcacgctgca gtccagcttg
     2041 cgcgacaaga gttcggcggc gccggcatcc tgatggcgca ccaccaatat gtcggggcgc
     2101 atggcgttaa gcgtgctggc ggtatcgatc aaggtctcgc ccttagagac cgaggaggtc
     2161 ttcaccgaca tgttcatcac atccgcgccc agcctcttac ccgccagctc gaaggaagac
     2221 tgggtgcgg
//
LOCUS       DATMDK010000334         2056 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_3373215,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000334 DATMDK010000000
VERSION     DATMDK010000334.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2056)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2056)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2056
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3373215"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1107)
                     /locus_tag="VNN98_06485"
     CDS             complement(<1..1107)
                     /locus_tag="VNN98_06485"
                     /EC_number="3.6.4.-"
                     /inference="COORDINATES: protein motif:HMM:NF012492.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HWM61780.1"
                     /translation="MSTGFDSLGLSPDILKAVADSGYTVPTPIQAQGIPHVLQRRDMI
                     GIAQTGTGKTASFTLPMIEMLSRGRAKARMPRALVLEPTRELADQVSESFDKYSKYSK
                     LSHALLIGGVSMDEQVKKLDRGVDVLIATPGRLMDHFERGRILLSQVNILVIDEADRM
                     LDMGFIPDVEKICKLLPFTRQTLFYSATMPPEIQRLTDQFLHNPVRIEVSRPATTAAN
                     ITQEVVEIPANDWAKREALRRLIREAEPSLKNAIVFCNRKRDVDVVAKSLVKHGFDAA
                     PIHGDLDQSLRTKTLDRFRAGELKILVASDVAARGLDVPAVSHVFNFDVPIHADDYVH
                     RIGRTGRAGRSGAAYMLASHRDGKYLDAIEKLTGQ"
     gene            1426..>2056
                     /locus_tag="VNN98_06490"
     CDS             1426..>2056
                     /locus_tag="VNN98_06490"
                     /inference="COORDINATES: protein motif:HMM:NF016289.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HWM61781.1"
                     /translation="MLRTCALAALVACIWLLSSYGQSRPEALGLNAPAAQFSAARADA
                     VLGRVLGDQQPHPVGSAAAEAVRARILKELAAMGVQARAQTGMSCLRDPRWDFLGCGT
                     ITDIVAGVSPGSGKAILLMAHTDSVAAGPGAADDASGVAILLETIRALRAGRISGEHP
                     IIALFTDGEEAGMLGAAAYLRDPLARAKIGAVINVEAGGNQGPSYLFQTS"
BASE COUNT          344 a          602 c          724 g          386 t
ORIGIN      
        1 ctggccggtg agtttttcga tggcgtcgag atatttgccg tcgcgatgcg aggccagcat
       61 ataggcggcg ccgctgcgcc cggcgcgtcc ggtgcggccg atacggtgga cgtagtcgtc
      121 ggcatggatc ggcacgtcga aattgaacac atggctgacc gccggaacat ccaagccgcg
      181 cgccgcgaca tcgctggcga ccagaatttt gagttctccg gcgcggaaac ggtccagggt
      241 tttggtgcgc aagctctggt cgaggtcacc atgaatgggg gcggcatcga agccgtgctt
      301 gaccagactc ttggccacca catccacgtc gcgcttgcgg ttgcagaaga cgatggcgtt
      361 tttcaaactc ggctccgcct cgcggatcag gcggcgcagc gcctcgcgct tggcccagtc
      421 attggcggga atttccacca cttcctgcgt gatgttggcg gcggtggtgg caggacgcga
      481 gacttcgatg cgcaccggat tgtgcaggaa ctggtcggtg aggcgctgga tttccggcgg
      541 catggtggcg gaatagaaca gggtctggcg ggtgaagggc agcagcttgc agatcttctc
      601 cacgtcgggg atgaagccca tgtccagcat gcggtccgct tcgtcgatca ccaggatatt
      661 gacctgggag agcaggatac ggccgcgctc gaaatgatcc atcagccggc cgggggtggc
      721 gatcagcacg tccacgccgc ggtctagctt cttgacctgc tcgtccatcg agacgccgcc
      781 gatcaagagc gcatggctga gcttggaata tttgctgtac ttgtcgaagc tttccgacac
      841 ttggtcggcc agctcgcggg tcggctccag caccagagcg cgcggcatgc gggccttggc
      901 gcggccgcgg ctcagcatct cgatcatggg cagggtgaag ctggcggtct tgccggtgcc
      961 ggtctgggcg atgccgatca tgtcgcgccg ctgcagcaca tgggggatgc cctgcgcctg
     1021 gatgggcgtg gggacggtgt agccgctgtc ggccaccgcc ttgaggatgt cgggagaaag
     1081 gcccagggag tcaaagcccg ttgacacggg ttcgccggcg gggatcacta ttgaagaagt
     1141 ctctgtatta tcaatgactt catctaatcc ggcttccgcg ccggaggtcg tcacactggt
     1201 cgtagcacgc tcctgaaaac ggggcgcgac gtgtggcgcc catggccggc ggcccagatg
     1261 gcggccgact cttgtcgcac cgcaaaatag ggatattcct cgaaaatgca agataagcct
     1321 gtattttcgc aaaatgggtg ctcaggcccg gcctcccccg cgagcggagc gaccggcggg
     1381 ggaggtgccc gtagcaccgc ctaggtgcga agggcggagg gggcaatgtt aagaacgtgt
     1441 gcgttagcgg cgctggtcgc ctgcatctgg cttttgtcga gttacggtca gtcgcgtccc
     1501 gaggcgcttg ggctgaacgc gcccgccgcg caattctccg cggcccgcgc cgatgctgtg
     1561 ctgggtcggg tgctgggcga tcagcagccg catccggtgg gaagcgccgc ggccgaagct
     1621 gtgcgcgccc gcatcctgaa ggaattggcg gccatgggcg tgcaggcccg cgcccaaacc
     1681 ggcatgagct gcctgcgcga tccacgctgg gactttctgg gctgcggcac gatcaccgat
     1741 atcgtggcgg gcgtgtcgcc gggttccggc aaggcgattc tactaatggc gcataccgac
     1801 tccgtcgctg ctggaccggg cgctgcggat gacgcctccg gggtcgcgat cctgctggag
     1861 actatccgtg cgctgagagc gggaagaata agcggcgaac accctattat tgccttgttc
     1921 accgatggcg aggaggctgg catgctgggc gcggcggcgt atctgcgcga tccgctggcg
     1981 cgggccaaga tcggcgcggt gatcaatgtc gaggcgggtg gcaaccaggg tcccagctat
     2041 ctgttccaga ccagcg
//
LOCUS       DATMDK010000335         2493 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_3131580,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000335 DATMDK010000000
VERSION     DATMDK010000335.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2493)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2493)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2493
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3131580"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..375)
                     /locus_tag="VNN98_06495"
     CDS             complement(<1..375)
                     /locus_tag="VNN98_06495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012321063.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HWM61782.1"
                     /translation="MTATRKEADAILRCATWRLVPLILAMYIAAFLNRVNVGFAALTM
                     NHDLGFTPEVYGVGAGIFFWGYFLFEVPSNLIMEKVGARIWICRIMLTWGLVSMATAF
                     VTGPYSFYAMRFVLGLAEAGLYP"
     gene            488..637
                     /locus_tag="VNN98_06500"
     CDS             488..637
                     /locus_tag="VNN98_06500"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61783.1"
                     /translation="MKKLIVPAFALILLSAGAAQALTIAIHTSGRHYHCSWDRDHHRR
                     VCRWV"
     gene            890..1261
                     /gene="rpsF"
                     /locus_tag="VNN98_06505"
     CDS             890..1261
                     /gene="rpsF"
                     /locus_tag="VNN98_06505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007403527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S6"
                     /protein_id="HWM61784.1"
                     /translation="MALYEHLLIARQDISAQQVDALATHLKTIVEGEGGKIEKQEYWG
                     LRGLAYRIKKNRKGHYVLLNINAPSGAVVELERQLKINEDVLRYITVKVDQFDISSSK
                     ARRDDKPEGAKPEGEAEEILV"
     gene            1360..1581
                     /gene="rpsR"
                     /locus_tag="VNN98_06510"
                     /pseudo
     CDS             1360..1581
                     /gene="rpsR"
                     /locus_tag="VNN98_06510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018427106.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S18"
     gene            1592..2182
                     /gene="rplI"
                     /locus_tag="VNN98_06515"
     CDS             1592..2182
                     /gene="rplI"
                     /locus_tag="VNN98_06515"
                     /inference="COORDINATES: protein motif:HMM:TIGR00158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000311 - plastid large ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L9"
                     /protein_id="HWM61785.1"
                     /translation="MQVILLERVEKLGQMGDEVRVKDGFARNFLLPKKKALRATKANR
                     DYFQTQKAQLEAHNLDRKKDADAIAKTLGGKTFTLIRQAGDRGQLYGSVSPRDIADTM
                     EKGGFKVDRHQVSISVAIKSIGLFTIPVVLHPEVKVNVTVNVARSEDEAERQARGENV
                     LAEKTEAEEAVVAAEELFEEGAGPKAEASEEEPAEA"
     gene            complement(2267..>2493)
                     /locus_tag="VNN98_06520"
     CDS             complement(2267..>2493)
                     /locus_tag="VNN98_06520"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61786.1"
                     /translation="GAALLSGLVFALASLALALWEAGRRIILSVCHAGEPVVASRYLR
                     TAFTTAMIAITFAAAALNAVPAPEIVYKAF"
BASE COUNT          533 a          785 c          773 g          402 t
ORIGIN      
        1 gggatagagg ccggcttcgg caagccccag cacaaaacgc atggcataga aactgtaggg
       61 cccggtgacg aaggcggtgg ccatagacac cagcccccag gtcagcatga tgcggcagat
      121 ccagatgcgc gcgccgacct tttccatgat caggttggag ggcacctcga acaggaaata
      181 gccccagaag aaaatgccgg cgcccacgcc atagacctcg ggcgtgaagc ccagatcgtg
      241 gttcatggtc agggcggcga agccgacatt cacccggttg aggaaggccg cgatgtacat
      301 ggccaggatc agcggcacca gccgccaggt ggcgcagcgc agaatcgcgt ccgcctcttt
      361 tcgtgtcgct gtcatgatgc ccgccctctt ctgccgcaag cgtccgacag cttggtgcgg
      421 attacaagtt cctcaccgtg gaaccgggtc ccagtgcagt acgttttaac ttctccgagg
      481 gaatttcatg aaaaaattga ttgttcccgc cttcgcgctg attctgctga gcgccggcgc
      541 cgcccaggcc ctgaccatcg ccatccacac cagcggccgc cactatcatt gcagctggga
      601 ccgggaccat caccgccggg tctgccgctg ggtttgaccc agccgccggg ctgaaatcgc
      661 cggcgtttga gccgctaacc gcttccctcg ccttgttttt tccgcgacct tgccctttgg
      721 aggccttttc tctatagacc cgcccctcaa cggctgcggt cggccggggg ctctcccctc
      781 ttcccttgga agaagcgaag cttgcgcatg gtgcgcgtcc cggacgagcc aaggcgaaac
      841 cgggaaccct ctcccgcttt cgttccgcgg ccaaccgaaa gggacttaga tggctctcta
      901 cgagcatctt ttgatcgcgc gccaggatat cagcgcgcaa caggtggacg ctctggccac
      961 ccacctcaag accatcgtcg aaggtgaagg cggcaagatc gagaagcagg aatattgggg
     1021 cctgcgcgga cttgcctatc gcatcaagaa aaaccgcaag ggccattacg tcctgctgaa
     1081 catcaatgcg ccgtcgggtg cggtggtcga gctggaacgc cagctcaaga tcaacgaaga
     1141 cgtgctgcgc tacatcaccg tcaaggtgga ccagttcgac atctcgtcga gcaaggcccg
     1201 gcgcgacgac aagcccgaag gcgccaagcc ggaaggcgaa gccgaggaga tcctggtatg
     1261 agttatggtg gcagccgcga aggcggacgt ggcggagatc gtgaaggcgg acgcggcggc
     1321 gaccgcgaag gcggacgcgg tggacgcgaa gacggcgcgc gccgtccctt cttccgccgc
     1381 aagaagacct gccccttctc cggcgataac gcgcccaaga ttgattacaa ggatgtgaag
     1441 ctgttgcagc gctacatttc cgagcgcggc aagatcgtgc cgtcgcgcat caccgcggtc
     1501 agcaacaaga agcagcgcat cctggcgaac gccatcaagc gcgcccgctt catggccctg
     1561 ctgccctacg tcgtgaagtg agggtagagc catgcaagtg atcctgctcg aacgagtcga
     1621 aaaactgggc cagatgggcg acgaagtccg cgtcaaggac ggcttcgccc gcaacttcct
     1681 gctgcccaag aagaaagcgc tgcgcgccac caaggcgaac cgcgactatt tccagaccca
     1741 gaaggcgcag ctggaagcgc acaatctgga ccgcaagaaa gacgccgacg ccatcgccaa
     1801 gacgctgggc ggcaagacct tcaccctgat ccgccaggcc ggcgatcgcg gccagctcta
     1861 tggttcggtg tcgccccgcg acatcgccga caccatggaa aagggcggct tcaaggtgga
     1921 ccgtcaccag gtctccatca gcgtggcgat caagtccatc ggcctgttca ccattccggt
     1981 ggtgttgcat cccgaagtga aggtcaacgt caccgtcaat gtcgcccgca gcgaagacga
     2041 agccgagcgc caagcgcgcg gcgagaatgt gctggcggag aagaccgagg ctgaggaagc
     2101 cgtggtcgcg gccgaggagc tgttcgagga aggcgccggc cccaaggccg aggcttctga
     2161 agaagaaccc gccgaggctt aagcaatatc cggtggcgac accggccgac atgaaaaagg
     2221 gagtggtggt gcttttggca acaccgctcc tttttcattt tcggcgctaa aaggctttgt
     2281 agacgatctc cggtgccggc acggcgttca gcgcggcggc ggcaaaggtg atggcgatca
     2341 tcgcggtggt gaaagcagtg cgcagatagc gcgacgccac caccggctcg ccggcatggc
     2401 agaccgaaag gattattctg cggcccgcct cccacagcgc cagcgccagg ctggcgagcg
     2461 caaagaccaa ccccgacaac aaagccgcgc cga
//
LOCUS       DATMDK010000336         4086 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_3374283,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000336 DATMDK010000000
VERSION     DATMDK010000336.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 4086)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4086)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4086
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3374283"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..342
                     /locus_tag="VNN98_06525"
     CDS             <1..342
                     /locus_tag="VNN98_06525"
                     /EC_number="1.13.11.5"
                     /inference="COORDINATES: protein motif:HMM:NF016125.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004411 - homogentisate 1,2-dioxygenase
                     activity [Evidence IEA];
                     GO_process: GO:0006559 - L-phenylalanine catabolic process
                     [Evidence IEA];
                     GO_process: GO:0006570 - tyrosine metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="homogentisate 1,2-dioxygenase domain-containing
                     protein"
                     /protein_id="HWM61787.1"
                     /translation="RFVVCTFVPRPIESDPGALKVPFFHSNDDFDEVIFYHAGNFFSR
                     DNIRPGMMTFHPSGFTHGPHPKAFAAGAAAVKTMTDEVAVMIDTRDALDMGAAAEAQE
                     DQGYADSWKTK"
     gene            339..1310
                     /locus_tag="VNN98_06530"
     CDS             339..1310
                     /locus_tag="VNN98_06530"
                     /inference="COORDINATES: protein motif:HMM:NF013706.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fumarylacetoacetate hydrolase family protein"
                     /protein_id="HWM61788.1"
                     /translation="MKLASLKGGRDGALVVVSRDLKLAAAVPTIAPNLQAALDDWGRA
                     APRLAAAYKELNGGGDGFAFRPERCASPLPRAYQWADGSAYVTHVELVRKARGAEMPA
                     SFWTDPLMYQGGSDGFLGPLDDIAAGDEAWGIDLEGELAVITGDVAYGCAAEEAGRHI
                     RLVMLCNDVSLRNLIPAELAKGFGFFQSKPASAFSPVAVTPDELGPAWRDGKLHLPLL
                     VDINGTRFGAPDAGTDMVFSFPQLIAHAARTRALAAGTIIGSGTVSNQDRSVGSACIA
                     ERRMLEQIEGGAPQTPFLKFGDRVRIEMKDSQGRSIFGAIDQHVRSL"
     gene            1294..1956
                     /gene="maiA"
                     /locus_tag="VNN98_06535"
     CDS             1294..1956
                     /gene="maiA"
                     /locus_tag="VNN98_06535"
                     /EC_number="5.2.1.2"
                     /inference="COORDINATES: protein motif:HMM:TIGR01262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016034 - maleylacetoacetate isomerase
                     activity [Evidence IEA];
                     GO_process: GO:0006559 - L-phenylalanine catabolic process
                     [Evidence IEA];
                     GO_process: GO:0006572 - tyrosine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="maleylacetoacetate isomerase"
                     /protein_id="HWM61789.1"
                     /translation="MSAVSEFALYGYFRSSAAFRVRIALNLKGLQADLRFVHLLKEGG
                     QQHSDTYKAVNPQELIPTLMHGGHTIGQSLAIIEYLDEVVPEPALLPPGPAARARVRQ
                     IALAIACDIHPLNNLRVLQYLRHKLGADDTARADWQHHWMATGFAALEAMLTQGAGTG
                     RFCHGDAPGLADVCLIPQMANARRIEMDLSPYPTLRRIEEAAYLLPAFTAARPENQPD
                     AE"
     gene            1946..2401
                     /locus_tag="VNN98_06540"
     CDS             1946..2401
                     /locus_tag="VNN98_06540"
                     /inference="COORDINATES: protein motif:HMM:NF024212.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family winged helix-turn-helix
                     transcriptional regulator"
                     /protein_id="HWM61790.1"
                     /translation="MPNKARLDLDRFMPYRLSVLTNRVSHAIARHYSQRFSLSIPEWR
                     VMAVLGQTPGLSAREVAMRTAMDKVQVSRAVQSLLAARRLTKVAHARDGRVAHLSLSA
                     RGQAIYNEVVPLALGLEEQFLSVLNAEERNVFDALLAKLSAGTMTAASN"
     gene            2414..3625
                     /locus_tag="VNN98_06545"
     CDS             2414..3625
                     /locus_tag="VNN98_06545"
                     /EC_number="2.3.1.29"
                     /inference="COORDINATES: protein motif:HMM:NF005394.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008890 - glycine C-acetyltransferase
                     activity [Evidence IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycine C-acetyltransferase"
                     /protein_id="HWM61791.1"
                     /translation="MPDAFYARVRVTLDEIEAAGLTKPERVIASRQGAVIAVKGADGK
                     TREVLNFCANNYLGLGGETRVSEAAAEAARDFGAGMASVRFICGTHTLHKQLEAVIAD
                     YLGYEDAILFPAAFDANGGLFEPLLDETDAIISDSLNHASIIDGVRLCKAKRTRFTNG
                     DMTALEDNLKTARADGARTIVIATDGVFSMDGHIADLGAITSLAGRYQALVMVDDCHA
                     TGFLGPQGRGSAAFRQVEGKIDLVSGTFGKALGGAMGGFVCARREVVALLRQRARPYL
                     FSNALAPAVCGAALEAIRIARSDEGDALRTQLFDNAVRFRKGMADAGFDLLPGEHPIV
                     PVMLGDARLAQNMAAQLLEEGIYVIGFSFPVVPKNQARIRTQLSAAHSSQQVDHAIKA
                     FARVRDRLKTS"
     gene            3622..>4086
                     /locus_tag="VNN98_06550"
     CDS             3622..>4086
                     /locus_tag="VNN98_06550"
                     /inference="COORDINATES: protein motif:HMM:NF019845.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alcohol dehydrogenase catalytic
                     domain-containing protein"
                     /protein_id="HWM61792.1"
                     /translation="MKALAKTTAAPGLTLIEADKPRIGPEDVLIRVRRTAICGTDLHI
                     YNWDEWAQKTIPVPMIVGHEFSGEIAEIGKAVTRPLFIGQRVSGEGHIIDLNSAAARA
                     GQPHLDPNTQGIGVNRQGAFAEYLSLPAFNVVPLPQTVDFEIGALLDPFGNAV"
BASE COUNT          699 a         1281 c         1339 g          767 t
ORIGIN      
        1 cgtttcgtgg tctgcacctt cgtgccgcgt ccgatcgaaa gcgatccggg ggcgctgaag
       61 gtgcccttct tccattccaa tgacgatttc gacgaagtga tcttctatca cgccggcaat
      121 ttcttcagcc gcgacaatat ccgtcccggc atgatgacgt tccatcccag cggcttcacc
      181 catgggccgc atcccaaggc ctttgccgcc ggcgccgctg cggtgaaaac catgaccgac
      241 gaggttgcgg taatgatcga cacgcgcgac gcgctggata tgggtgccgc ggctgaggcg
      301 caggaagacc agggttacgc cgacagctgg aagacgaaat gaagcttgca tccctgaaag
      361 gcgggcgcga tggcgcgctg gtggtggtgt cgcgcgatct gaagctggcg gcggcggtgc
      421 cgacaatcgc ccccaacctg caagcggcgc tggacgattg gggccgcgcc gcaccgaggc
      481 tggcggcggc ctataaggag ttgaacggcg gcggcgacgg gttcgccttc cgcccggaac
      541 gctgcgccag tccgctgccg cgcgcctatc aatgggccga cgggtctgcc tatgtcaccc
      601 atgtcgaact ggtgcgcaag gcacggggcg cggagatgcc cgccagcttc tggaccgatc
      661 ccttgatgta tcagggcggc tcggacggct ttctgggccc gctggatgat atcgccgcgg
      721 gtgacgaggc ttggggcatc gacctggaag gcgagttggc ggtgatcacc ggcgacgtgg
      781 cgtatgggtg cgccgccgaa gaggcgggca ggcacatccg cctggtgatg ctgtgcaacg
      841 acgtctcctt gcgcaacctg atcccggccg agctggccaa ggggttcggc ttcttccagt
      901 ccaagcccgc ctccgccttt tcgccggtgg cggtgacgcc cgatgagttg ggcccggcct
      961 ggcgggatgg caagctgcac ctgccgctgc tggtcgatat caacggcacc cggttcggcg
     1021 cccccgatgc cggcaccgac atggtgttct cctttcccca gctgatcgct catgccgcac
     1081 gcacccgtgc cctggcggca ggcaccatca tcgggtcggg aacggtgtcc aaccaggacc
     1141 gctcagtggg cagcgcctgc atcgccgagc ggcgcatgct ggaacagatc gagggcggcg
     1201 ccccccaaac cccgtttctc aaattcggcg acagggtgcg gatcgagatg aaggactctc
     1261 agggccgcag cattttcgga gcgatcgacc agcatgtccg cagtctctga atttgcgctg
     1321 tacggctatt tccgctcctc ggcggcgttt cgggtgcgca tcgcgctgaa tctgaaaggg
     1381 ctgcaggccg acctgcgctt tgtgcatctg ctgaaggagg gcggccaaca gcacagtgac
     1441 acctacaaag cggtcaatcc acaagagttg attccgaccc tgatgcatgg cggccacacg
     1501 atcggccagt cgctggccat catcgaatat ctcgacgagg tggtgcccga acctgcattg
     1561 ctgccgccgg gtcccgcggc ccgtgcccgg gtgcgccaga tcgcactggc catcgcctgt
     1621 gatatccacc ccctcaacaa tctgcgggtg ctgcaatatc tgcgtcacaa attgggcgcg
     1681 gatgacaccg cgcgggccga ctggcaacat cactggatgg ccacgggatt tgcggcgctg
     1741 gaggcgatgc tgacgcaggg tgccggcacg ggacgttttt gtcacggcga cgcgccaggc
     1801 ttggcggatg tctgcctgat cccgcaaatg gccaatgccc ggcgtatcga aatggatctt
     1861 tcgccctatc ccaccctgcg gcggatcgaa gaggcggcct atctgttgcc ggcctttacc
     1921 gccgcccggc cggagaacca gcccgatgcc gaataaggcc cgcctggacc tggaccggtt
     1981 catgccctac cgcctctcgg tgctcaccaa ccgcgtttct catgccattg cgcggcatta
     2041 ttcccagcgt ttttcactta gcattccgga atggcgggtg atggcggtgt tggggcagac
     2101 gcccggcctg tcggcgcggg aagtcgcgat gcggaccgcc atggacaagg tccaggtcag
     2161 ccgggcggtg caatcgttgc tggcggctcg gcgcctgacc aaggtcgcgc atgcgcgcga
     2221 tggcagggtt gcgcatctgt cgctgtcggc gcgcggccag gcgatctata acgaggtcgt
     2281 gcctctggcc ttggggctgg aggaacagtt cttgtcggtt ttgaacgccg aggagcgcaa
     2341 tgtcttcgat gccttgctcg cgaagctgtc ggcgggcacc atgaccgccg catccaatta
     2401 aggggagctt gtcgtgccgg atgcctttta tgcacgggtc cgcgtaacct tggacgagat
     2461 cgaagccgcc ggcctcacca agccggagcg ggtgattgct tcgcgccagg gcgcggtcat
     2521 tgcggtgaag ggcgccgacg gcaaaacccg cgaggtgctg aatttctgcg ccaacaatta
     2581 cctgggcttg ggcggcgaga cgcgtgtgtc ggaggcggcg gccgaagcgg cgcgcgattt
     2641 cggcgccggc atggcctcgg tgcgctttat ctgcggcacc cataccttgc acaagcaatt
     2701 ggaagccgtg atcgccgatt atctgggcta tgaggacgcc atcctgtttc cggccgcctt
     2761 cgacgccaat ggcgggctgt tcgagccgtt gctggacgag acggatgcca tcatctccga
     2821 cagcctcaat catgcctcga tcatcgatgg ggtgcggctg tgcaaggcca agcgcacccg
     2881 cttcaccaat ggcgacatga cggcgctgga agacaatctc aaaaccgcgc gagcggacgg
     2941 cgcacgcaca attgtcatcg ccaccgacgg cgttttttcc atggacgggc atatcgccga
     3001 tctcggggcc atcacgtccc tggccggtag atatcaggcg ttggtcatgg tggatgactg
     3061 ccatgccacc ggctttctgg gaccccaagg acggggttct gcagcgttcc gccaggtcga
     3121 aggcaagatc gatctcgtca gcggcacttt cggcaaggcc ttgggcggcg ccatgggcgg
     3181 ctttgtctgc gccaggcgcg aagtggtggc gttgctgcgt cagcgggcgc ggccttatct
     3241 cttctccaat gccttggcgc cggcggtctg cggcgcggcg ctggaagcca tccgcatcgc
     3301 ccggtcagac gaaggcgacg ctttgcgcac ccagctgttt gacaatgccg tgcgctttcg
     3361 caaaggaatg gcggatgccg gttttgattt gctgcccggc gagcatccca tcgtgccggt
     3421 gatgctgggc gatgcccggc tggcccagaa catggcggcg caactattgg aagaaggaat
     3481 ttatgtgatc ggcttttcgt ttccggtggt gccgaagaac caggcccgca tccgcaccca
     3541 gctgtcggcg gcgcatagca gccagcaggt cgatcacgcc atcaaggctt ttgcgcgggt
     3601 gcgcgacagg ttgaaaacat catgaaagct ctggccaaaa ccactgccgc gcccggcctg
     3661 accctgatcg aagcggacaa gccgcggatc ggcccggaag acgtgttgat ccgggtgcgc
     3721 cgcaccgcca tctgcggcac cgacctgcac atctataact gggacgagtg ggcgcagaaa
     3781 accattcccg ttcccatgat cgtgggccac gaattttccg gcgagatcgc cgaaatcggc
     3841 aaagcggtga cgcggccatt gttcatcggc cagcgcgtct cgggcgaggg gcacatcatc
     3901 gacttgaatt cggcagcggc gcgcgccggc cagccgcatc tggatcccaa cacccaaggc
     3961 atcggcgtca accgccaggg tgcctttgcg gagtatctca gcctgccggc cttcaatgtt
     4021 gtgccgttgc cccagactgt ggattttgag atcggcgcct tgctggaccc gttcggcaat
     4081 gccgtg
//
LOCUS       DATMDK010000337         2793 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_388788,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000337 DATMDK010000000
VERSION     DATMDK010000337.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2793)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2793)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2793
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_388788"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..366)
                     /locus_tag="VNN98_06555"
     CDS             complement(<1..366)
                     /locus_tag="VNN98_06555"
                     /inference="COORDINATES: protein motif:HMM:NF013122.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004527 - exonuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exonuclease domain-containing protein"
                     /protein_id="HWM61793.1"
                     /translation="MREIVFDTETTGFEPSDGHRIVEIGCVELMDHFPTGRTLQFYLN
                     PERDVPIESQRVHGLSAEFLADKALFAHVVDEFLAFLGDATLVIHNASFDIKFINAEL
                     SRVGRAPIPLARAVDTIEIA"
     gene            complement(359..952)
                     /gene="coaE"
                     /locus_tag="VNN98_06560"
     CDS             complement(359..952)
                     /gene="coaE"
                     /locus_tag="VNN98_06560"
                     /EC_number="2.7.1.24"
                     /inference="COORDINATES: protein motif:HMM:TIGR00152.1"
                     /note="Dephospho-CoA kinase (CoaE) performs the final step
                     in coenzyme A biosynthesis; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004140 - dephospho-CoA kinase activity
                     [Evidence IEA];
                     GO_process: GO:0015937 - coenzyme A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dephospho-CoA kinase"
                     /protein_id="HWM61794.1"
                     /translation="MNANKPFVIGLTGSIGMGKSQTARLFAAEGVPVFDADAVIHELY
                     AAAAAAMIEAAFPGSTKRGVVDRAALAKAITGDTGALARLEGLMHPLVADRRADFLAK
                     TDAPIVLLDIPLLLETGTKVDAVVVATAPETVQRERVLARPGMSEEKFAALKARQMSD
                     MEKRAQAHYLVITDKGLDHAREQVKMILADIRNKIRA"
     gene            complement(939..1793)
                     /locus_tag="VNN98_06565"
     CDS             complement(939..1793)
                     /locus_tag="VNN98_06565"
                     /EC_number="1.1.1.25"
                     /inference="COORDINATES: protein motif:HMM:NF001312.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004764 - shikimate 3-dehydrogenase
                     (NADP+) activity [Evidence IEA];
                     GO_process: GO:0019632 - shikimate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate dehydrogenase"
                     /protein_id="HWM61795.1"
                     /translation="MSLTGKAKLAGIIGWPVSHSLSPVLHGYWLEEYGIDGAMVPLAA
                     AREDFAAVIDGVRRAGFKGVNVTVPHKEAAFALADKSHDSARQAGAANLLVFREDGIE
                     AHNTDTYGLVQSLGTAVALNRKTVVLLGAGGAARGAVLSLHQLGVTTIHILNRHIARA
                     QALARELQPTVAGTLVAGDLGDWATVAGGAALLVNSTSAGMTGNAPLELDLSALNKDA
                     AVCDIVYNPLETQLLKDAAARGHKTVNGLEMLMYQAVPSFHAFFGKEPEVTPSLRDAL
                     VKVLRERQ"
     gene            complement(1790..2383)
                     /locus_tag="VNN98_06570"
     CDS             complement(1790..2383)
                     /locus_tag="VNN98_06570"
                     /inference="COORDINATES: protein motif:HMM:NF014591.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047429 - nucleoside triphosphate
                     diphosphatase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Maf family protein"
                     /protein_id="HWM61796.1"
                     /translation="MSLVLASGSTSRKMLLTAAGVAFTADPADLDEAALMADLQQRGA
                     DAVRVASELAQQKALAVSRRHPGRIVLGGDSVIAFEGEFLSKCASLAEARTLLARLSG
                     HTHLLVSAAALAKDGALLWTHASPCQMTMRDLSLQFLDDYLAQEGTAILSSVGCYHFE
                     GRGAQLFAKVDGDYFSVLGLPLLEVLAQLRKEGLLAS"
     gene            complement(2380..>2793)
                     /locus_tag="VNN98_06575"
     CDS             complement(2380..>2793)
                     /locus_tag="VNN98_06575"
                     /inference="COORDINATES: protein motif:HMM:NF015575.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016772 - transferase activity,
                     transferring phosphorus-containing groups [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="kinase/pyrophosphorylase"
                     /protein_id="HWM61797.1"
                     /translation="SLDSIHQAEVILTGASRTSKTPTCVYLAIRGIRAANVPLVPRMP
                     PPYQLLAAKAPLIVGLWVSPDRLVQVRRNRLTSMGESRDSDYVEPDAVRAEIAATRQL
                     FENQEWPTIDVSRRSIEETAAAVMNLLAERKEANT"
BASE COUNT          521 a          931 c          836 g          505 t
ORIGIN      
        1 ggcgatctcg atcgtgtcca cggcccgggc cagggggatc ggcgcacgcc ccacccggct
       61 gagttcggca ttgatgaact tgatgtcgaa actggcattg tggatcacca aggtggcgtc
      121 gccgagaaac gccagaaact cgtccaccac atgggcgaac agcgccttgt cggcgaggaa
      181 ttccgccgac aggccgtgca cccgctggga ctcgatggga acgtcgcgtt cgggattcaa
      241 atagaactgc aaagtgcggc cggtggggaa atgatccatc agctcgacac agccgatttc
      301 gacgatcctg tggccgtcac tcggctcaaa ccctgtcgtc tcggtatcga agactatctc
      361 acgcacgaat tttattccga atatccgcca ggatcatttt cacctgttcg cgggcgtgat
      421 ccaagccctt gtcggtgatc accagataat gcgcctgtgc acgcttttcc atgtcgctca
      481 tctgacgggc tttgagggcg gcgaacttct cctcgctcat gccggggcgg gccaacaccc
      541 gttcccgctg gacggtttcg ggcgcagtgg ccaccaccac ggcatccacc ttggttccgg
      601 tttccagcag caaggggata tccagcagca cgataggcgc gtcggtcttg gcgagaaaat
      661 ccgcccgccg gtcggccacc agcggatgca tcaggccttc cagccgcgcc agggcgcccg
      721 tatcgccggt gatggccttg gccagcgccg cgcggtccac cacgccgcgt ttggtcgagc
      781 caggaaaagc cgcctcaatc atcgccgccg ccgcggcggc ataaagttca tggatgaccg
      841 cgtcggcatc gaataccgga acgccttcgg cagcgaacag cctggcggtt tggcttttgc
      901 ccatgccgat cgaaccggtc aggccgatga caaagggctt attggcgttc acgcagtacc
      961 tttaccagcg cgtcgcgcag gctcggcgtt acctctggct ccttgccgaa aaaggcgtgg
     1021 aaagacggca cagcctgata catcagcatc tcgagtccat taacggtctt gtgaccgcgc
     1081 gccgcagcgt ctttcagcag ctgggtttcc agcggattgt agacaatgtc gcagacggcg
     1141 gcgtccttgt tcaaggccga aagatcgagt tccagtggcg cattgcctgt catgcccgcg
     1201 ctggtggaat tgaccagtaa tgcggcaccg cccgcgaccg tcgcccaatc tccgagatcg
     1261 cctgcgacaa gcgtccccgc cacggtgggt tgcagttctc gcgccaatgc ttgcgccctg
     1321 gcgatgtgac gattcaggat atggatggtg gtaacaccga gctgatgcag cgacagcacg
     1381 gcgccccgcg ccgcaccgcc cgcgcccagc aacacgacag tttttctgtt gagcgcaaca
     1441 gcagttccca ggctttggac aaggccgtag gtgtcggtat tgtgcgcctc aattccgtct
     1501 tcacgaaaca caagaagatt ggccgcccct gcttgccgcg cggaatcgtg gctcttgtct
     1561 gccagcgcaa acgccgcttc cttgtgcggc accgtcacat tcacgccttt gaatccggcg
     1621 cggcgcaccc cgtcgatcac cgcggcaaag tcttcgcgcg ccgccgccag cggcaccatc
     1681 gcgccgtcaa tcccatattc ttccagccaa tagccgtgca gcaccggcga cagcgagtgg
     1741 cttaccggcc aaccgatgat ccccgccagc ttggctttgc ccgtcaaact catgaggcca
     1801 agagaccttc cttgcgcaat tgggccaaaa cctccagcag cggcaggccc agcaccgaaa
     1861 aataatcgcc gtccacttta gcgaacaatt gcgccccccg cccctcgaaa tgatagcagc
     1921 ccaccgagga caggatcgcc gtgccttcct gggcgagata atcgtccagg aattgcaggc
     1981 tcagatcgcg catggtcatt tggcacgggc tggcatgcgt ccacagcaag gcgccatcct
     2041 tggccagtgc cgccgccgaa accagcagat gggtgtgccc cgacagccgc gccagcaggg
     2101 tccgcgcttc ggccaggctg gcgcatttgc tgaggaactc tccctcaaaa gcgatgacgc
     2161 tgtcgccgcc caacacgatc cggcccggat ggcggcgcga tactgccagc gccttttgct
     2221 gcgccagctc ggacgctacc cgcaccgcat cagcgccgcg ctgctgcaaa tccgccatca
     2281 gcgccgcttc atccagatcg gcgggatcgg cggtaaaagc gacaccggcc gccgtcagca
     2341 gcatcttgcg gctggtgctg cctgatgcca gcaccagact cacgtgttgg cttccttgcg
     2401 ctcggccagc aggttcatca ccgccgccgc ggtctcctcg atggagcggc gcgagacatc
     2461 gatggtcggc cactcctggt tttcgaaaag ctggcgggtg gcggcgattt cggcccgcac
     2521 cgcgtccggc tcgacatagt cgctgtcgcg gctctcgccc atgctggtca accggttgcg
     2581 ccgcacctgc accagccggt cgggcgacac ccacagaccc acgatcagcg gcgccttggc
     2641 ggccagcagc tgatagggcg gcggcatgcg cggcaccagc ggcacattgg cggcgcggat
     2701 gccgcgaatg gcgagataga cgcaagtcgg cgtcttggag gtacggctgg cgccggtgag
     2761 aattacctcg gcctggtgaa tggaatccag cga
//
LOCUS       DATMDK010000338         3400 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2898455,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000338 DATMDK010000000
VERSION     DATMDK010000338.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3400)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3400)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3400
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2898455"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..789)
                     /locus_tag="VNN98_06580"
     CDS             complement(<1..789)
                     /locus_tag="VNN98_06580"
                     /EC_number="5.4.99.-"
                     /inference="COORDINATES: protein motif:HMM:NF013045.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0001522 - pseudouridine synthesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HWM61798.1"
                     /translation="MPETRTIDPDDDGIRIDRWFKRHYPNVTHVLLEKLLRKGEVRLD
                     GKRAKSADRVAAGQSMRLPPQVIHAKEMHTEKPQAEPKHPLASKDMGSLADRILYMDK
                     QVIVIDKPPGLATQGGSGLTRHVDGMLESLQYEKPTRPKLVHRLDRDTSGVLLIARTA
                     LAALGLSASLALRDTSKVYWALTRGVPKQKNGVVKGALAKEGGHGPHGRDERMAMTEE
                     GEEGAKFSLTEYAVMATAGSEFAWVAARPITGRTHQIRVHLASLG"
     gene            complement(782..1159)
                     /gene="crcB"
                     /locus_tag="VNN98_06585"
     CDS             complement(782..1159)
                     /gene="crcB"
                     /locus_tag="VNN98_06585"
                     /inference="COORDINATES: protein motif:HMM:NF010791.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fluoride efflux transporter CrcB"
                     /protein_id="HWM61799.1"
                     /translation="MGVVLAVGVGGGLGALARYYIASAIQSVGSAFPWGIFVVNISGG
                     LMMGLIVEASALKLNLSPELRAFLTVGILGGYTTFSTFSLDSALMLQKGQYMAAASYM
                     IGSVVLSVLALFAGLWIVRSIYA"
     gene            complement(1160..2470)
                     /locus_tag="VNN98_06590"
     CDS             complement(1160..2470)
                     /locus_tag="VNN98_06590"
                     /inference="COORDINATES: protein motif:HMM:NF023428.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="replication-associated recombination protein A"
                     /protein_id="HWM61800.1"
                     /translation="MSDLFESSDLADDAPRPLADRLRPKALAEVVGQDHLLSPEGPLG
                     RMVANGRPTSIILWGPPGTGKTTIARLLSTAFNLHFEQLSAVFSGVADLKKTFEAARQ
                     RRKMGQGTLLFIDEIHRFNRSQQDSFLPVVEDGTVILVGATTENPSFELNGALLSRGQ
                     VLVLRRLDDAALETLLQRAESYYEKTLPLTDDARASLRAMADGDGRYLLNLVEELSSV
                     KAAAALDTAALVAAVQRRMPLYDKSREEHYNIISALHKSIRGSDPDAALYWLARMLAG
                     GEQPLFIARRLVRAAVEDIGLADPQAVHQALAAKDVFDFLGSPEGELALAQCVLYLAS
                     APKSNAVYKAMGAAKRAAEEHGSLMPPAHILNAPTKLMKNLGYGAGYQYDHDAEGGFS
                     GQNYFPDDMARQQFYAPKDTGFEREIAKRLEYWSKLRTKRAGEE"
     gene            complement(2539..3117)
                     /locus_tag="VNN98_06595"
     CDS             complement(2539..3117)
                     /locus_tag="VNN98_06595"
                     /inference="COORDINATES: protein motif:HMM:NF024895.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane beta-barrel protein"
                     /protein_id="HWM61801.1"
                     /translation="MRNLIIASAATLLLGTLAAQADSYVSVLGGPTFAPGLNVSGTTH
                     GMDTGFNVGARVGTSLDTLNLPDFSNFSIEADGLFNQSNYSGIANARLQSSSYMGNLI
                     YHLPMDGPFELYGGAGLGAVSTNIDNGVGNHGGSTVLGWQALGGVEYRASDQASLFAE
                     YRYQNAHDVNAGGLTNIGNTSNNLSFGVKWHL"
     gene            complement(3155..>3400)
                     /locus_tag="VNN98_06600"
     CDS             complement(3155..>3400)
                     /locus_tag="VNN98_06600"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61802.1"
                     /translation="QASGRAETPAPFQARGNDIPVSAFPRRSQVGIIRRRIIITFDII
                     AVMNAAEMYLEICYHMLPAINSDVCPACNATEGNYLR"
BASE COUNT          643 a         1088 c         1023 g          646 t
ORIGIN      
        1 gcccaggctg gcgagatgca cgcggatctg gtgggtgcgc ccggtgatgg gccgcgccgc
       61 cacccaggca aattcgctgc ccgccgtcgc catcacggca tattcggtca gcgagaattt
      121 ggcgccctcc tcgccttcct ccgtcatcgc catgcgttcg tcgcggccat gcggaccatg
      181 gccgccttcc ttggccagcg cgcccttgac cacaccgttc ttctgtttgg gcacgccgcg
      241 ggtcagcgcc caatagacct tggaagtatc gcgcagcgcg agactcgccg acaggcccaa
      301 ggccgccagt gccgtgcgcg cgatcagcag cacgccggag gtatcgcggt ccaaccggtg
      361 caccagcttg ggcctggtgg gtttttcata ttgcagcgac tccagcatgc catcgacatg
      421 ccgggtcagg cctgagccgc cctgggttgc caagcctggc ggcttgtcga tcacgatcac
      481 ctgcttgtcc atatagagga tgcgatccgc caggcttccc atatccttgg aagccagcgg
      541 atgcttgggc tcggcttgcg gtttttcggt gtgcatttcc ttggcatgga tcacctgcgg
      601 cggcaggcgc atggactgac ccgccgcgac ccggtcggcc gacttggcgc gcttaccgtc
      661 cagtcgcacc tcgcctttgc gcagcaactt ttccagcagc acatgcgtca cgttgggata
      721 gtgccgcttg aaccagcggt cgatgcggat gccgtcatcg tccgggtcga tggtgcgtgt
      781 ctcaggcata aatgcttcgc acgatccaca gtccggcgaa tagcgccaga acggagagca
      841 caactgagcc gatcatgtag ctggcggcag ccatgtattg acccttttgc agcatcagag
      901 cgctgtccag cgagaaggtg gaaaaggtgg tgtagccgcc cagaatgccg acagtgagga
      961 aagcgcgcag ttcaggcgac aggttcagct tcaaggcgct ggcttccaca atcagtccca
     1021 tcatcaagcc gccgctgatg ttgacgacaa agatacccca gggaaaggcg ctgcccaccg
     1081 attggatcgc cgaggcgatg taatagcgcg ccagcgcgcc caacccgccg cccacgccca
     1141 ccgccaacac aacgcccatc tattcctccc ctgcccgttt cgtccgcagc tttgaccaat
     1201 attccagccg cttggcaatc tcgcgctcga agccggtgtc cttgggcgcg tagaattgct
     1261 ggcgcgccat gtcgtcggga aaataattct gccccgaaaa accgccttcg gcgtcatggt
     1321 catattgata gcccgcgccg taacccagat tcttcatcag cttggtgggg gcgttgagaa
     1381 tatgggccgg cggcatcagc gagccatgtt cctcggccgc ccgcttggcc gcgcccatcg
     1441 ccttatacac cgcattggat ttgggggcgc tggccaaata gagcacgcat tgcgccaggg
     1501 ccagttcgcc ttccggcgaa cccaggaaat cgaacacgtc tttcgccgcc agcgcctgat
     1561 gcaccgcctg gggatcggcc aggccgatat cctccaccgc ggcgcgcacc aggcggcggg
     1621 cgatgaacag cggctgttca ccgcccgcca gcatccgcgc cagccagtag agcgccgcat
     1681 cgggatcgct gccgcgaatg gacttatgca gcgccgagat gatgttgtag tgctcctcgc
     1741 ggctcttatc gtagagcggc atgcgccgct gcaccgcagc aaccagcgcc gccgtatcca
     1801 gagccgccgc cgctttcacg ctggagagtt cttccaccag gttgagcaga tagcggccgt
     1861 cgccatcggc catggcgcgc agactggcgc gggcgtcgtc ggtcagcggc aacgtctttt
     1921 cgtaataact ttccgcccgc tgcagcaggg tctccagcgc ggcatcgtcc agccgccgca
     1981 gcaccagcac ctggccgcgc gacagcagcg cgccgttcaa ctcgaaggac ggattttcgg
     2041 tggtggcgcc caccaggatc acggtgccgt cctccaccac cggcaggaag ctgtcttgct
     2101 gactgcggtt gaagcggtga atttcgtcga tgaacagaag cgtgccctgc cccatcttgc
     2161 ggcgctgccg cgccgcctcg aaggtcttct tcagatcggc cacgccggag aacaccgccg
     2221 acaattgttc aaagtggaga ttgaaagcgg tggagagcag ccgcgcgatg gtggtcttgc
     2281 cggtaccggg cggtccccac aggatgatgg aggtgggccg cccatttgcc accatgcggc
     2341 ccagcgggcc ttcaggcgat aacagatggt cttgcccaac cacctcggcc agcgctttgg
     2401 gccgcagccg gtcggccagc ggccgcggcg cgtcgtccgc caggtcgctg gattcaaaca
     2461 ggtcgctcat gcggctttat agcaaagaaa aagcctcgcg aggggttcct cgcgaggccc
     2521 attctcagac ctaaatcctt agaggtgcca cttcactccg aaagacaggt tgttgctggt
     2581 attgccgata ttggtcaggc cgccggcatt gacgtcatgg gcgttctgat agcgatattc
     2641 agcgaacaag ctggcctggt ccgaggcccg gtactccacg ccgcccagcg cctgccagcc
     2701 cagcacggtg ctgccgccgt gattgcccac gccattgtcg atattggtgc tgaccgcacc
     2761 caacccggcg ccgccataaa gttcaaacgg cccgtccatg ggcaggtgat agatcaggtt
     2821 acccatatag gaactggact gcagccgtgc attggcaatg ccggaataat tggactggtt
     2881 gaacaagcca tcggcctcga tcgagaagtt tgagaagtcg ggcaggttca gggtgtccag
     2941 gctggtgccg acgcgcgcac cgacattgaa gccggtgtcc atgccgtggg tagtgccgct
     3001 gacgttcagg cctggggcga aggtcgggcc acccaaaacc gaaacatagg agtcggcctg
     3061 ggccgctaac gtgccgagta acagtgtcgc ggcggaagca ataatcaagt ttctcatgtc
     3121 agtccttttg catggcgccc cccatgccca aggcctaacg cagatagttg ccttccgtcg
     3181 cgttacaagc gggacaaacg tcagaattga tcgcgggcaa catgtggtaa caaatctcta
     3241 gatacatttc cgccgcgttc atgactgcga tgatatcaaa tgtgatgatt atccttctac
     3301 ggataatgcc aacttgcgac cgccggggaa atgcggagac aggaatatca ttcccacgag
     3361 cctggaatgg cgccggagtt tccgccctgc cgctcgcttg
//
LOCUS       DATMDK010000339         2224 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_148212,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000339 DATMDK010000000
VERSION     DATMDK010000339.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2224)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2224)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2224
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_148212"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(314..925)
                     /gene="rdgB"
                     /locus_tag="VNN98_06605"
     CDS             complement(314..925)
                     /gene="rdgB"
                     /locus_tag="VNN98_06605"
                     /inference="COORDINATES: protein motif:HMM:TIGR00042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016462 - pyrophosphatase activity
                     [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RdgB/HAM1 family non-canonical purine NTP
                     pyrophosphatase"
                     /protein_id="HWM61803.1"
                     /translation="MRLPRGSQLVVASHNNGKVREIKALLGPHGIEPISAGALGLPEP
                     EETGATFAANAQIKALASAKGSKHAALADDSGLCVEALDGAPGIYSARWAGPTKDFRI
                     AMTRIHDELRHKELTTSPAKFICALCIALPSGESQTFEGEVHGHLTFPPRGDHGFGYD
                     PIFIADGMEQTFAEIDPAKKHAMSHRAKAFEKLLHSGIFNEST"
     gene            complement(922..1635)
                     /gene="rph"
                     /locus_tag="VNN98_06610"
     CDS             complement(922..1635)
                     /gene="rph"
                     /locus_tag="VNN98_06610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009584291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004549 - tRNA-specific ribonuclease
                     activity [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease PH"
                     /protein_id="HWM61804.1"
                     /translation="MRPGNRAPDQMRAVSLTPGFSRHAEGSCLVKFGDTHVLVTASLE
                     EKAPPFLKGSGKGWVTAEYGMLPRSTHDRMRREAAAGKQSGRTQEIQRLVGRSLRAVC
                     DLSALGERQITIDCDVLQADGGTRTAAVTGGFVALAQCVAFMKKIGMVAAPVIKDHIA
                     AVSCGIVKGTPVLDLDYDEDSTAETDANFVLTGAGGLVEIQGTAEGAPFSEAELLALL
                     TLARKGIGELVTLQKQVLA"
     gene            1756..>2224
                     /locus_tag="VNN98_06615"
     CDS             1756..>2224
                     /locus_tag="VNN98_06615"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61805.1"
                     /translation="MSLETRTPFVMPQGFTDRPREVFRHLVEAFLASGEPVGSRTLSQ
                     RLPLALSPASIRNVMADLESMGLLYAPHTSAGRAPTEKGLRLFVDGLLEIGELAPDER
                     VAIEARMSGSGQRIEDMLTQATQSLAGLSRCAGLMITTKQDSALKHVEFVAVAP"
BASE COUNT          394 a          729 c          690 g          411 t
ORIGIN      
        1 accggacggt ctgtctgatt tgccgccacc cattccaatt ccgcaacaat gccgtccacc
       61 cagccgtctt cgtcgatggc ggtgcggaca tgggaattga aatcgcaata gggacacttg
      121 gcggcgcaga aaggccagtg gatgtagacg ccgaagctca cgacgagccc aacttgtcat
      181 ggcccgcgaa tgcgggccac ccaggtgacc ctaggtttgc tgccgctaag cggatcgcag
      241 cccttttcgt caacgccaat agctccccaa ctgggtggcc cgcttttgcg ggccatgaca
      301 ccgacggggc gggttaagtg gattcattga aaatgcccga atgcagcaac ttctcgaatg
      361 ccttggcgcg atggctcatg gcgtgctttt tcgctggatc gatctcggcg aaagtctgct
      421 ccatgccatc ggcgataaag atgggatcat agccaaagcc gtgatcgccg cgtggcggga
      481 acgtcaagtg cccgtgtact tcgccttcaa aggtctggga ttcgccggac ggcagggcga
      541 tgcacagggc gcagatgaat ttggcgggac tggtcgtcaa ctccttgtgc cgcaactcat
      601 catgtatgcg ggtcatggcg atgcggaagt ccttggtcgg tcccgcccag cgcgccgaat
      661 aaattcccgg cgccccgtcc agcgcctcca cgcacaatcc ggaatcatcc gccagggcgg
      721 cgtgcttgct gcccttggcg gacgccagcg ccttgatttg cgcattggcg gcgaaggtcg
      781 cgccagtttc ctcaggctcg ggcaggccca gcgcacccgc gctgatcggc tcaatgccgt
      841 gtggacccaa cagcgccttg atctcgcgca ccttgccgtt gttgtgcgag gcgaccacca
      901 actggctgcc gcgcggcagt ctcatgccag cacctgcttt tgcaacgtca ccaattcgcc
      961 gatgcccttg cgcgccaaag ttagcagcgc cagcaattct gcttcgctga agggggcgcc
     1021 ttcggcggtg ccctgaatct cgaccaggcc gcccgcgccg gtcagcacga aattggcgtc
     1081 ggtctcggca gtggagtctt cgtcgtaatc cagatccagc actggcgtgc ccttgacgat
     1141 gccgcacgac accgccgcga tgtgatcctt gatcaccggc gcagctacca tgccgatttt
     1201 tttcatgaag gcgacgcatt gcgccaaagc cacgaagccg ccggtgacgg cggcggtgcg
     1261 ggtgccgcca tcggcctgca gcacatcgca gtcgatggtg atctggcgtt cgcccaaggc
     1321 ggagaggtcg cacaccgcgc gaaggctgcg gcccaccagc cgctgaatct cctgggtgcg
     1381 gcccgactgc ttgccggcgg cggcctcgcg ccgcatccgg tcatgggtgg agcgcggcag
     1441 catgccgtat tccgccgtca cccaaccctt gcccgagccc ttgagaaagg gcggcgcctt
     1501 ttcctccagg ctggccgtga ccagcacatg ggtgtcgccg aacttgacca ggcacgagcc
     1561 ctcggcatgg cgggaaaagc cgggggtgag cgaaacggcg cgcatctggt cgggggcgcg
     1621 gttgcccggg cgaatgcccg tagcattgga agggcgcatg gagcctcata tatgggtctg
     1681 ctaacgtggg gtgttaccta caggcagccg tgcttgctgc gcaaccgacg cagaaatatc
     1741 aggactttca atagcttgag cttggaaacc cgcaccccct tcgtaatgcc gcaaggcttt
     1801 accgaccgcc cgcgcgaggt tttccgccat ctggtggagg cttttctcgc ctcgggcgag
     1861 ccggtgggct cgcgcaccct gtctcagcgc ctgcccctgg ccctgtcgcc ggcctccatc
     1921 cgcaatgtga tggccgacct ggaatccatg ggcctgctct atgccccgca caccagcgcg
     1981 ggccgcgctc ccaccgaaaa aggcctcagg ctcttcgtgg acggacttct ggaaattgga
     2041 gaattggccc ccgatgagcg ggtcgccatc gaggcgcgga tgtcaggcag cggccagcgc
     2101 attgaagaca tgctgaccca ggccacgcaa agcctcgcgg gcctatcgcg ctgcgcaggc
     2161 ctgatgatca ccaccaaaca ggactccgcc ctcaagcatg tcgagttcgt cgccgtcgcg
     2221 cccg
//
LOCUS       DATMDK010000340         4503 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_389781,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000340 DATMDK010000000
VERSION     DATMDK010000340.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 4503)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4503)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4503
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_389781"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(7..1401)
                     /locus_tag="VNN98_06620"
     CDS             complement(7..1401)
                     /locus_tag="VNN98_06620"
                     /EC_number="2.5.1.54"
                     /inference="COORDINATES: protein motif:HMM:TIGR01358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003849 - 3-deoxy-7-phosphoheptulonate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0009423 - chorismate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-7-phosphoheptulonate synthase class II"
                     /protein_id="HWM61806.1"
                     /translation="MEFSIVAQSWTPQSWQDRPARQMPEYPDKAALDAVLGRLRTHPP
                     LVFAGEARNLQASLAQAVEGKAFLLQGGDCAESFAEFHPDNIRDTFRVLLQMAVVLTF
                     AAGVPVVKVGRIAGQFAKPRSDDFEKQGDVTLPSYRGDNINGGDFTPASRIPDPQRLL
                     QATAQSAATLNLLRAFAQGGYADLHNVHRWMLGFIADSPAAEQYKGLAQRISETLNFM
                     AACGITSDSVPQLRGTDFYTSHEALLLPYEQAMTRVDSTSGDWYDTSAHMLWIGDRTR
                     QLDGAHVEFMRGIKNPIGLKCGPSLEPDDLLRLIAALNPQNIPGRLTLIARFGADKIA
                     DKLPPLIRAVKREGALVVWSSDPMHGNTIKLQSGYKTRPVERILEEVRSFFSIHRAEG
                     THAGGVHFEMTGQNVTECLGGAQGLKEIDLQDRYQTACDPRLNASQALELAFLIAEGI
                     RDERMKLAGRAASA"
     gene            complement(1505..2905)
                     /gene="gor"
                     /locus_tag="VNN98_06625"
     CDS             complement(1505..2905)
                     /gene="gor"
                     /locus_tag="VNN98_06625"
                     /EC_number="1.8.1.7"
                     /inference="COORDINATES: protein motif:HMM:NF004776.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004362 - glutathione-disulfide reductase
                     (NADP) activity [Evidence IEA];
                     GO_process: GO:0045454 - cell redox homeostasis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione-disulfide reductase"
                     /protein_id="HWM61807.1"
                     /translation="MTQYDYDLFVIGGGSGGVRASRMAALAGARVALAEEWRMGGTCV
                     IRGCIPKKLLVYASQFSENVKDAAGYGWDFGDARFDWPTLIANKDKEIARLEGLYTAN
                     VEKAGVTIYQDRAVFEDPHTLLLLNAGKRITADKILIATGNRPTREMGTSHVIPGGDL
                     CITSDEAFHLEKLPKRILIAGGGYIALEFAHIFHGLGSHVSLIYRGDKPLRGFDDDMR
                     DALVESMKQRGLEVLLGCEFTKVEKRGQSLHAETSKGDVIECDQIMLAIGRMPNTLAL
                     HVDKAGVELGKRGEVTVDDYSRTSAPHIYAVGDVTDRVQLTPVAIHEAMCFVETTFKN
                     NPTKPDHLHVPSAVFTTPELACVGLSEQKALLMGHSIDVYKSTFKPLLHTLGGRPVRT
                     HMKLIVDSRTDKVLGCHIFGDHASEIIQVVVVCLKMGATKADFDGTMALHPTAAEELV
                     TMRSKSYSKSPADPKA"
     gene            complement(2916..3689)
                     /locus_tag="VNN98_06630"
     CDS             complement(2916..3689)
                     /locus_tag="VNN98_06630"
                     /inference="COORDINATES: protein motif:HMM:NF015506.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015291 - secondary active transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB family protein"
                     /protein_id="HWM61808.1"
                     /translation="MRLKVCAPGAVLGMVLALLAVAAPARADVPPVVTTSACGGTQPV
                     HPMPIMATHLLPPYPPISVRLNEQGNSILKVVIAPSGNVVEDSLVQSSGSDRLDSAAL
                     DYVKQNWRWQPMPDCKTPVSLAVSVAWRIRSPAPALDPALVMKLVHFMLADPTDYPPD
                     ARKVKAIVLMMGVVSEQGVWEKVMPLRSSGDPALDAKSVELVRSRSRWSALHLDGKPV
                     GSAVVTGVIWTPPGETPPDPEQIGKVMELFAPHPPPSPP"
     gene            complement(3716..4417)
                     /gene="rpiA"
                     /locus_tag="VNN98_06635"
     CDS             complement(3716..4417)
                     /gene="rpiA"
                     /locus_tag="VNN98_06635"
                     /EC_number="5.3.1.6"
                     /inference="COORDINATES: protein motif:HMM:NF001924.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004751 - ribose-5-phosphate isomerase
                     activity [Evidence IEA];
                     GO_process: GO:0009052 - pentose-phosphate shunt,
                     non-oxidative branch [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-5-phosphate isomerase RpiA"
                     /protein_id="HWM61809.1"
                     /translation="MTDQTALKRAVAAKALDYVQDGMKLGLGSGSTAEIFVEMLAPRV
                     RGGEKLLCVPTSERTATLARKLGLTLASLDDLAPLDLTVDGADEADRNLDVIKGGGGM
                     LLREKIVAAASRKMIVIADETKLVPRLGKFPLPVEVVEFGHKSTAARLAAALAAAGYA
                     KAPMSLRQRDGGAFKTDGGNVIYDIAFGMIPNAPKLAAALQAVPGVVEHGLFIGIVTT
                     LLIAGPGEIEEIHRA"
BASE COUNT          796 a         1430 c         1441 g          836 t
ORIGIN      
        1 cgtttatcag gctgaagcgg cccgcccggc aagcttcatg cgctcgtccc ggattccttc
       61 cgcgatcagg aacgccagtt ccagcgcctg gctggcattg aggcgcggat cgcaggcggt
      121 ctgatagcgg tcctgcaaat cgatttcctt cagcccctgg gctcccccca gacattcggt
      181 gacgttctgg ccggtcattt cgaaatgcac gccgccggca tgggtgcctt cggcgcggtg
      241 gatggaaaag aagctgcgca cttcttccag gatgcgttcg acggggcgcg tcttgtagcc
      301 cgattgcagc ttgatggtgt tgccgtgcat gggatcggac gaccatacaa ccaaagcgcc
      361 ttcgcgtttt acggcgcgga tcaggggcgg cagcttgtcg gcgatcttgt cggcgccgaa
      421 gcgggcgatc aaggtcaggc ggccggggat attctgcgga ttcagcgccg cgatcaggcg
      481 cagcagatcg tccggctcca ggctgggacc gcatttcagg ccgatgggat ttttgatgcc
      541 gcgcatgaat tcgacatggg cgccgtccag ctggcgggtg cggtcgccga tccacagcat
      601 atgggcggat gtgtcgtacc agtcgccgct ggtggaatcc acgcgcgtca tcgcctgctc
      661 atagggcagc agcagcgctt cgtggctggt gtagaaatcg gtgccgcgca gctgcggcac
      721 cgaatccgag gtgatgccgc acgccgccat gaagttgagc gtttcggaga tacgctgggc
      781 gagaccttta tattgttcag cggccggcga gtccgcgatg aagcccagca tccaacgatg
      841 gacattgtgc aggtcggcat agccgccctg ggcgaaggcg cgcagcaggt tcaaggtcgc
      901 cgccgactgg gcggtggcct gcagcaggcg ttggggatca ggaatgcgcg atgcgggcgt
      961 gaagtcgccg ccattgatgt tgtcgccgcg ataggagggc aaagtgacat cgccctgctt
     1021 ttcgaaatcg tcggacctgg gcttagcgaa ctggccggcg atgcggccca ctttcacaac
     1081 cggcacgccg gcggcaaagg tcagcaccac cgccatctgc agcagcacgc ggaaggtgtc
     1141 gcggatattg tcgggatgga attcggcgaa gctttccgcg cagtccccgc cttgcaacag
     1201 aaacgccttg ccttccaccg cctgggccag cgacgcctgc aggttgcggg cctcgcccgc
     1261 aaacaccagc ggcggatggg tcctcagcct gcccaggaca gcgtccagcg ccgccttgtc
     1321 cggatattcc ggcatctgac gggcgggcct gtcctgccaa ctctgcgggg tccagctctg
     1381 ggccacgatc gaaaactcca ccaatagggc cgtggatata agagatcggg ggccgtttta
     1441 ccagcattgc gccaagcaag ggtgaacagg acgctgggga agaagaccct ttcccggcaa
     1501 aggtttatgc cttcggatcg gccgggcttt tgctgtagct tttgctccgc atggtcacca
     1561 gttcctcagc ggcagtgggg tgcagcgcca tggtgccgtc gaaatcggcc ttggtcgcgc
     1621 ccatcttcag gcataccacc accacctgaa taatctccga cgcgtggtcg ccgaaaatgt
     1681 ggcaacccag caccttgtcg gtcctggaat ccacgatcag cttcatgtgg gtgcgcaccg
     1741 gccgcccgcc caaagtgtgc agcaagggct tgaaggtgga tttgtagaca tcgatggaat
     1801 ggcccatcag cagcgccttt tgttcgctga gaccgacaca ggccagctcc ggcgtggtga
     1861 agaccgcgct gggaacatgc agatggtcgg gcttggtggg attgttcttg aaggtggttt
     1921 cgacaaaaca catggcttca tggatcgcca ccggcgtcaa ttgcacccgg tcggtgacat
     1981 cgcccacggc atagatgtgc ggcgcactgg tgcgggaata gtcgtccacc gtcacttcgc
     2041 cgcgcttgcc cagctccacg cccgccttgt cgacatgcag cgccagggta ttgggcatgc
     2101 ggccgatcgc cagcatgatc tggtcgcatt cgatcacatc gcccttgctg gtttcggcat
     2161 gcaggctttg gccacgcttc tccaccttgg tgaattcgca gcccagcagc acttccagcc
     2221 cgcgttgctt catggactcg accagcgcgt cacgcatgtc gtcgtcaaag ccgcgcaagg
     2281 gtttgtcgcc gcgataaatc agcgacacat ggctgcccaa tccatggaag atgtgggcga
     2341 attccagggc gatataaccg ccgcccgcaa tcagaatgcg tttgggcagc ttttccaggt
     2401 gaaacgcttc gtctgaggtg atgcagagat cgccgccggg aatgacgtgg ctggtgccca
     2461 tctcgcgggt ggggcggttg ccggtggcga tgaggatttt gtccgccgtg atgcgcttgc
     2521 cggcattgag cagcagcaaa gtgtgcgggt cctcgaacac ggcgcggtct tgatagatgg
     2581 taacgccggc cttctcgaca ttggcggtgt aaaggccttc cagccgcgcg atttccttgt
     2641 ccttgttggc aatcaaagtg ggccagtcga agcgggcatc gccgaagtcc cagccatagc
     2701 cggcggcatc cttgacgttc tcggaaaact ggctggcata gaccagcagc ttcttgggga
     2761 tgcagccgcg gatgacgcag gtgccgccca tgcgccattc ctcggccagc gccacgcgcg
     2821 cgcccgccag cgccgccatg cggctggcgc gcaccccgcc gctgccgcca ccgatgacga
     2881 aaaggtcata gtcatactgg gtcatggctg tccgtttacg gtggggatgg cggcgggtgc
     2941 ggcgcgaaca attccatgac cttgccgatc tgttcgggat cgggcggcgt ttcgccgggc
     3001 ggcgtccaga tcacaccggt gaccaccgcg ctgccgacgg gcttgccatc caagtgcagt
     3061 gccgaccagc ggctgcgcga ccgtaccagc tcgaccgatt tcgcatccag tgcgggatcg
     3121 ccgctgctcc gcaacggcat gactttttcc cacacgcctt gctcggatac cacgcccatc
     3181 atcagcacga tcgcctttac cttccgcgcg tccggcggat agtcggtggg gtccgccaac
     3241 atgaaatgca ccagcttcat caccaaggcg ggatccaggg ctggggctgg gctacggatg
     3301 cgccaggcca ccgataccgc cagggaaacc ggcgtcttgc agtccggcat cggctgccag
     3361 cgccaattct gcttcacata gtccagcgcg gcgctgtcga gccggtccga gccgctggac
     3421 tgcacaagcg aatcttccac cacattgccg ctgggtgcga tgaccacctt cagaatgctg
     3481 ttgccctgct cgttcagccg gaccgatatc ggcggataag gcggcagcag atgcgtcgcc
     3541 atgatcggca tggggtggac cggctgggta ccgccgcaag cactggtggt gacaacgggc
     3601 gggacatcgg cgcgcgcggg cgcggcaacc gccagcagtg ccagaaccat gcccagaacc
     3661 gcgccaggcg cacacacctt caaccgcatc aatgcttctc cccattcccg ctccatcagg
     3721 cgcgatgtat ttcctcgatc tcacccggcc ccgcgatcag cagcgtggtg acgatgccga
     3781 tgaacagccc atgctcgacc actccgggca ccgcttgaag cgccgccgcc agcttgggcg
     3841 cgttcgggat catgccgaag gcgatgtcat aaatcacatt gccgccatcg gtcttgaagg
     3901 cgccgccgtc ccgctgccgc aagctcatag gcgccttggc gtaaccggcc gccgccagcg
     3961 ccgcggccag ccgcgcggcg gtggatttgt ggccgaactc caccacctcc accggcaagg
     4021 gaaacttgcc cagccgcggc accagcttgg tctcatcggc gatcacgatc atcttgcgcg
     4081 aagctgccgc cacgatcttt tcccgcagca gcataccgcc gccgcccttg atgacatcga
     4141 gattgcggtc ggcctcgtcg gcgccgtcca ccgtcaagtc cagaggcgcc agatcgtcca
     4201 gcgacgccag ggtcaggccc agcttgcgcg ccagggtggc ggtacgttcg gaggtgggca
     4261 cgcagagcag tttttcgccg ccgcgcaccc ggggcgccag catctcgaca aaaatctcgg
     4321 cggtggagcc ggagcccagg cccagcttca tgccgtcctg gacatagtcc agggccttgg
     4381 cggcgacggc gcgtttgagg gcggtctggt cggtcatgcg gtgaccttac tgggccgctc
     4441 caatccggcc aagagcatgc cgcgaggaat tttggggcgt gagcaggagc gtcgcgcgga
     4501 gcg
//
LOCUS       DATMDK010000341         2128 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_148737,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000341 DATMDK010000000
VERSION     DATMDK010000341.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2128)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2128)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2128
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_148737"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..858)
                     /locus_tag="VNN98_06640"
     CDS             complement(<1..858)
                     /locus_tag="VNN98_06640"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HWM61810.1"
                     /translation="MLAIDNITVRIAGREILSGATANLPAGRRIGLVGRNGAGKSTLF
                     KVILGQLHQDDGDVSWPSAWRVGAVAQEAPGTDTSLLDTVLEADPERLALLAEAEHES
                     DGHRLGDIYHRLEAIDAYTAPSRAAEILAGLGFSAEDQLRPCREFSGGWRMRVALAAI
                     LFSAPDLLLLDEPTNYLDLEGVLWLENFIQKYRGTILIVSHDRDLLNTGCEFILHLER
                     GKLKLYTGGYDTFMATRAAARANDMAFAKKQEAARARMQKFVDRFKASAAKAAQAQSR
                     MKMLAKMATV"
     gene            980..1402
                     /gene="ndk"
                     /locus_tag="VNN98_06645"
     CDS             980..1402
                     /gene="ndk"
                     /locus_tag="VNN98_06645"
                     /EC_number="2.7.4.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011542052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004550 - nucleoside diphosphate kinase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside-diphosphate kinase"
                     /protein_id="HWM61811.1"
                     /translation="MAVERTLSIIKPDATRRNLTGKIIAKFEDAGLKVIASRRMRLSQ
                     ADAEAFYGVHKERPFFNDLVKFMISGPVVVQVLEGEGAIAKNREVMGATNPANAAAGT
                     IRKEFAESIEANSVHGSDAPETAANEIRFFFRGLDIVG"
     gene            1607..1837
                     /locus_tag="VNN98_06650"
     CDS             1607..1837
                     /locus_tag="VNN98_06650"
                     /inference="COORDINATES: protein motif:HMM:NF013691.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004518 - nuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GIY-YIG nuclease family protein"
                     /protein_id="HWM61812.1"
                     /translation="MTNNLARRVWEHREGLVEGFTKRYGVKRLVYFEIFPTAADAIHR
                     ENRIKKYRRAWKLNLISRLNPEWRDLAETPNG"
     gene            1888..>2128
                     /locus_tag="VNN98_06655"
     CDS             1888..>2128
                     /locus_tag="VNN98_06655"
                     /inference="COORDINATES: protein motif:HMM:NF012334.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HWM61813.1"
                     /translation="MQGKTVIITGATSGIGEVAAVHLAEQGARIVFTARDKDRAVGTM
                     AKLKHANPGADHAVHLADLSTLAEMKRIGAVLVAEP"
BASE COUNT          397 a          682 c          657 g          392 t
ORIGIN      
        1 caccgtcgcc atcttggcca gcatcttcat gcggctttgt gcctgcgccg ccttggccgc
       61 cgaggccttg aagcggtcga cgaatttctg catgcgcgcg cgtgccgctt cctgcttttt
      121 ggcaaacgcc atgtcgttgg cgcgggcggc ggcgcgggtg gccatgaacg tgtcgtagcc
      181 gccggtgtaa agcttcagct tgccccgctc cagatgcagg atgaattcgc agcccgtgtt
      241 gagcaggtcg cggtcatggc tgacaatcag aatggtgccg cgatatttct ggatgaaatt
      301 ctccagccac agcacgcctt ccagatcgag atagttggtg ggttcgtcca gcagcagcag
      361 gtcgggggcg gagaacagaa tggcggccag ggccacgcgc atgcgccagc caccggaaaa
      421 ttcgcggcaa gggcgcagct ggtcttccgc tgaaaagccc aggcccgcca gaatttcggc
      481 ggcgcgcgag ggtgcggtat aggcgtcgat cgcctcaagg cgatgataaa tatctcccaa
      541 ccgatgtccg tcgctttcat gctcggcttc ggccagcagc gccaggcgtt ctggatcggc
      601 ttccagcacg gtgtccagca ggctggtatc ggtgccgggg gcttcctggg ccactgcgcc
      661 cacccgccag gcgctgggcc agctgacgtc gccgtcatcc tggtgcaact gccccaggat
      721 caccttgaac agggtggatt tgcccgcgcc attgcgcccc accaggccga tgcggcgccc
      781 cgcgggcagg ttggcggtgg cgccggacag gatttcccgc ccggcgatcc gcaccgtgat
      841 gttgtcaatc gccagcattg cggggcctta taacccgtca tggcccgcca gcaaggccca
      901 tagggccgca gcgcgtgcgg gccattgcgg tttcgccaag cccatagcat aaggcgcgcg
      961 ccccctttcg gagactgtca tggccgtcga gcgcactctt tcgatcatca agccggacgc
     1021 gacccgccgg aaccttaccg gcaaaatcat cgccaagttc gaggatgcgg gtctcaaagt
     1081 gatcgccagc cgccgcatgc gcctgtcgca ggccgatgcg gaagcctttt acggcgtcca
     1141 caaggagcgc cccttcttca acgatctggt caagttcatg atctccggcc ccgtggtcgt
     1201 ccaggtgctg gaaggcgagg gcgccatcgc caagaaccgc gaagtgatgg gcgcgaccaa
     1261 tcccgccaat gccgcagccg gcaccatccg caaggaattc gccgagtcaa tcgaggccaa
     1321 ttcggtgcac ggctccgatg cgccggaaac cgctgccaat gagatcaggt tcttttttag
     1381 aggcttagat atcgtcggct gatccacccc ctttcgtcat ggcccgcccc ccggatcgcg
     1441 cgaagcgcga ccggaggaca agctttaagt gcgggccatc cataaccctc ccgacatcag
     1501 gcttgaacta tcgcgggagt ttccgcgata gttcgccgat gcggttcgag cgcatctatt
     1561 acgtctacat tctcgccagc ggtcccagcg gcacgctcta caccgtgtga ccaacaactt
     1621 ggcgcgccgg gtttgggaac atcgcgaggg gttggtggaa ggtttcacca aacgctacgg
     1681 ggtgaagcgt ttagtctatt tcgagatttt tcccacggcg gctgacgcca tccaccggga
     1741 aaatcgaatc aagaaatatc ggcgcgcttg gaagttgaac ctgatctcgc ggctgaaccc
     1801 ggaatggcgc gatcttgcgg aaactcccaa cgggtgagac cgtatggatg gcccggacga
     1861 gccgggccat gacgaatgag gtgcgatatg caaggcaaga ccgtcatcat caccggtgcg
     1921 acttccggta tcggggaagt cgccgccgtc cacctggcgg agcagggcgc ccgcatcgtc
     1981 ttcaccgctc gcgacaaaga tcgcgccgtt ggcacgatgg cgaaactgaa acacgccaat
     2041 cccggcgccg accacgccgt ccatctggcc gatctttcca ccctggccga aatgaagcgc
     2101 atcggcgccg tgctggtcgc cgagccgc
//
LOCUS       DATMDK010000342         3569 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2900198,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000342 DATMDK010000000
VERSION     DATMDK010000342.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3569)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3569)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3569
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2900198"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(263..1726)
                     /locus_tag="VNN98_06660"
     CDS             complement(263..1726)
                     /locus_tag="VNN98_06660"
                     /inference="COORDINATES: protein motif:HMM:TIGR01845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux transporter outer membrane subunit"
                     /protein_id="HWM61814.1"
                     /translation="MSKAFRLIVPAIAAVLAGCSTPVPQSLAPQMVPKVFTGPVPAAA
                     QVWPEVSWWKTFGDPQLTGLIEAAQADNRDVAIAAARVMQAEAQSTIQRSALFPQIGA
                     QADHRSSGCSGQSCQTFAKAKAFDLSFNASYELDFWGLARDNLRAADEQLKSARFAQV
                     SVALTVTANVANQYLNVLAIRRRIAIANDNIAAINNILDVIKLKVKAGAASHLDLARE
                     QAQVEAGEAQLPGLETLEKQALFSLAVLLGRVPEGFDVKAIPLDTILAPVVGAGLPSD
                     LLLRRPDIAQAEADLAAAHANVDAARAAFLPQISLTGSGGFVSTAIGTLLQGSNFGYS
                     YGANLLQAIFDGGKLAGQKDLAEGVQREFIASYQSAALNAYADVENALAQVANTGRAQ
                     DHLEREVKAAREAFEISQLQYRQGAADLLTVLQAQQTLFSAEDQLVQIVLANRQSAIH
                     LYEALGGGWMENQDDRTQFVRDVSIQQDEKRTSAGAK"
     gene            complement(1719..>3569)
                     /locus_tag="VNN98_06665"
     CDS             complement(1719..>3569)
                     /locus_tag="VNN98_06665"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HWM61815.1"
                     /translation="ADSLADHSDPIQNQNWLSNNNFGYVTLAPGTEPALVIAKLKPIL
                     DRYVDLSKFVNVKIPGSQVLDPRLTHFQDAHLTTDRYGGMKPPGSMTTLYGMGVIGLL
                     ILLVACFNFMNLATARATMRAREISLRKCVGATRGQLMIQFLGESVVIALIALVLALA
                     LAEVLLPAYASFLGAPLALHYLADWPLMLAFISIAILAGLLGGLYPALVISGFRPAAV
                     LRSNQSGNPGSGALRTGLVVLQFAVSIGLGIAAMVVFQQIDFARHLDLGFRHDNIVIT
                     DTGGRLSREGVDSYVRALAKGPGILGVTRSSFIAFSGDNNTLPTQKPGDPQFLSPTNY
                     AITPDYFSLYGVKILAGRVLSDHRSDDEFHTFEEENYAARNEGHNVMVNAALARVLGY
                     APADIIGKTFIFGKSHMRVVGVAADILVDGARNPVMPTVFDYRPNGAQNLSIRVQAGR
                     TQEAIAYIDRVSRSFIHNVAFSHHILDDSYEKLYQADRKQGQMFAVFVAIAIAIACMG
                     LFGLAAFTAGRRTKEIGIRKVFGARVRDVVFLLLWQFSIPVMIANLIAWPVAWYYLHG
                     WLQGFAYRIPLSPLYFLGAGALALVIAWATIFAHAHRVARANPINALRYE"
BASE COUNT          725 a         1102 c         1123 g          619 t
ORIGIN      
        1 gtattcaaag gcgtcgagat cgatcagcag cgcaggcgta tcgacctcat cctcgcgcat
       61 gccgggctgg gcgggtggga gctgaagcac gggttatcct cttgcggggc gacagtgacg
      121 gccgaacgcc ccaatcggtg cccgcgcaac taccacggca cgattgcgcc cgacaacaag
      181 gtccgcggtc ccagcaccaa tcgatgccga aggcgagcag catattgccg gccgccgcct
      241 tggtgagcca gcccacccct gatcatttcg cgccggcact tgtgcgcttc tcatcctgct
      301 ggatcgaaac gtcccggaca aactgggtgc ggtcgtcctg attttccatc cagccgccgc
      361 ccagcgcttc atacagatgg atagcggact ggcggttggc cagcacgatc tgcaccagct
      421 gatcctcggc ggagaacagg gtctgctggg cctgcagcac cgtcagaagg tcggccgcgc
      481 cctggcgata ttgcagctgc gagatctcaa aggcttcgcg ggcggccttc acttcgcgct
      541 ccagatgatc ctgcgccctg ccggtgttgg cgacctgggc cagtgcattc tccacatcgg
      601 cataggcgtt gagtgcagca ctctggtaac tggcgatgaa ttcccgctgc acgccctccg
      661 ccagatcctt ctgcccggcc agcttgccgc cgtcgaagat cgcctgtagc aggttggcgc
      721 cgtagctgta gccgaaattc gatccctgca gcagcgtgcc gatggcggtg ctgacgaaac
      781 cgccggagcc ggtcagcgag atctgcggca ggaacgctgc ccgcgcggcg tcgacattgg
      841 catgggcggc ggcaagatcg gcttcagcct gggcgatgtc gggccgccgc aacagcagat
      901 cggacggcag gcccgcgccg acgacaggtg ccaggatggt gtcgaggggt atcgccttga
      961 catcgaaccc ttccggcacg cgtcccagca gcaccgccag cgaaaacagc gcctgcttct
     1021 ccagcgtctc caggccgggc agctgggctt cccccgcttc gacctgcgcc tgttcgcgtg
     1081 ccaggtcgag atgggaggcc gcgcccgcct tcaccttgag cttgatcaca tccaggatgt
     1141 tgttgatcgc agcgatattg tcattggcga tggcgatgcg ccggcggatc gccagtacat
     1201 tcaaatactg gttggcgaca ttggccgtga ccgtgagcgc caccgacact tgcgcgaagc
     1261 gcgccgattt gagctgctcg tctgccgcac gcagattgtc ccgcgccagg ccccagaaat
     1321 cgagttcata gctggcgttg aaactcaggt cgaacgcctt ggctttggcg aaggtctggc
     1381 aactttggcc gctgcaaccg ctactgcgat gatccgcctg ggcgccgatc tgggggaaaa
     1441 gcgccgaacg ctgaatggtg gattgcgcct cggcctgcat cacccgcgcg gcggcaatgg
     1501 ctacgtcacg gttgtcagcc tgcgccgctt cgatcagccc tgtcagctgc ggatcgccga
     1561 aagttttcca ccacgacacc tccggccaca cctgcgccgc ggcggggacc gggccggtga
     1621 aaaccttggg caccatctgg ggcgcaagcg attgcggcac cggcgtggag cagcctgcca
     1681 gcacagcggc tatggccgga acgatcaggc gaaaggcttt actcatagcg cagcgcgttg
     1741 atgggattgg cgcgggcgac gcgatgggcg tgggcgaaga tggtggccca ggcgatcacc
     1801 agggccagcg cacctgcccc caggaaataa agcgggctga gcgggatgcg gtaggcgaag
     1861 ccctgcagcc agccgtgcag atagtaccag gcaaccggcc aggcgatcag gttggcgatc
     1921 atcacgggaa tggagaattg ccacaacagc aggaagacca cgtcgcggac gcgcgcgccg
     1981 aacaccttgc ggatgccgat ttccttggtg cggcggccgg cagtgaaggc cgccaggccg
     2041 aacaggccca tgcaggcgat ggcaatggcg atggcgacaa aaaccgcaaa catctgccct
     2101 tgcttgcggt ccgcctggta gagcttttca taactgtcgt ccaggatgtg atgggaaaac
     2161 gcgacattgt ggatgaagct gcgggaaacg cgatcgatat aggctatggc ctcctgcgtg
     2221 cgacccgcct ggacccgaat ggagaggttc tgcgcgccgt tgggccgata gtcaaagaca
     2281 gtcggcatga ctgggttgcg cgcgccatcc accagtatgt cggcggcgac tccaacgaca
     2341 cgcatgtgcg atttcccgaa gataaatgtc tttccgatga tatcggccgg cgcgtagccc
     2401 agcactcgcg ccagtgcggc gttgaccatg acattgtggc cttcattgcg cgccgcatag
     2461 ttttcttctt caaacgtatg gaactcatcg tcgctgcggt ggtcggacag aacgcgcccc
     2521 gcaaggatct tgacgccgta gagactgaaa tagtccggcg tgatggcata attggtgggc
     2581 gataaaaatt gcggatcgcc cggtttctgg gtcggcaagg tgttattgtc gccgctgaag
     2641 gcaatgaagc tggacctggt cactcccaga atgcccggac ccttggccag tgcccgcacg
     2701 taactatcga ccccttcgcg cgacagccgc ccacccgtgt ccgtgatcac gatattgtcg
     2761 tgacggaatc ccagatcgag atgccgcgcg aagtcgatct gctgaaacac caccatcgcg
     2821 gcaatgccca ggccgatgga caccgcgaat tgcagcacca ccaggccggt gcgcaacgcg
     2881 cccgagccgg gattgccgga ttggttggag cgcagcacgg cggcgggacg gaagcccgaa
     2941 atcaccagcg ccggataaag accgcccagc aatccagcca gaatggcaat gctgataaaa
     3001 gccagcatca acggccaatc ggccagatag tgcaaggcca gcggcgcccc caggaaactg
     3061 gcataggcgg gaagcaagac ctccgccaac gccaacgcca acaccagcgc gatcaaagcg
     3121 atcaccacgg attcacccaa aaattggatc atcaactggc cacgggtggc gccgacgcac
     3181 ttgcgcaaac tgatttcgcg agcgcgcatg gtggcgcgag cagtcgccag attcatgaaa
     3241 ttgaagcagg cgaccagcag gatcaggagc ccgatcacgc ccatgccata gagtgtcgtc
     3301 atactgccgg gcggcttcat cccgccatag cggtcggtgg tcagatgcgc atcctgaaaa
     3361 tgcgtcagcc gcggatccaa aacctggctg ccgggaattt tgacattgac gaactttgac
     3421 agatcgacat agcggtccag gataggcttg agcttggcaa taaccagtgc gggctcggtg
     3481 cccggcgcca gggtcacata accgaagttg ttgttagaga gccagttctg attctggatc
     3541 ggatccgaat ggtccgcgag agaatcggc
//
LOCUS       DATMDK010000343         3674 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_3377526,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000343 DATMDK010000000
VERSION     DATMDK010000343.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3674)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3674)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3674
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3377526"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(181..771)
                     /locus_tag="VNN98_06670"
     CDS             complement(181..771)
                     /locus_tag="VNN98_06670"
                     /inference="COORDINATES: protein motif:HMM:NF022155.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2497 domain-containing protein"
                     /protein_id="HWM61816.1"
                     /translation="MEEILASIRKIISEDAPEAPAPEAAPAAAPSMPAAPLPVHDDVL
                     ELTQEVEAAPVYVAPPPTPPAPIPVPAEDLVFENVVPPAPAEHADIFSDHTRKAMEDA
                     FDSIPEEPAAAPAPSRSAPLAPVDGASVENVFERAVRESFEPVLQKYLSDNSAAVIDR
                     MKPLIREWMDEHFPALLEGAVRAEVERVVKARGTKR"
     gene            complement(943..1584)
                     /locus_tag="VNN98_06675"
     CDS             complement(943..1584)
                     /locus_tag="VNN98_06675"
                     /inference="COORDINATES: protein motif:HMM:NF013315.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-L-isoaspartate O-methyltransferase"
                     /protein_id="HWM61817.1"
                     /translation="MSESARFNMIEAQVRTSNVTDPRILAAMSAVAREKFVPSAARAL
                     AYADVPVAVAQGRYLLDPRSFAKLLQLAQIKAGDRVLDVGCGTGYSAAVLARLAAEVI
                     ALEQDADLVRIASELLANVVGKVELVQGGLIEGVKGQAPFDVIFVNGAIEQAPETLLS
                     QLAEGGRLVAVLKDGQSRAWLFLKENGQIGKRPDFDADVPLLAGFKKAMGFVF"
     gene            1703..2071
                     /locus_tag="VNN98_06680"
     CDS             1703..2071
                     /locus_tag="VNN98_06680"
                     /inference="COORDINATES: protein motif:HMM:NF013098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HWM61818.1"
                     /translation="MIGYVTLGTADLTRGATFYDAIAKELGVGRMMENDQFIAWGIPG
                     GAAGIGLTKPFDGNPATVGNGVMVALGAKDRAQVDRLHALALSLGGTCEGPPGPRGEG
                     FYAAYFRDLDGNKLNAFVMS"
     gene            2285..2358
                     /locus_tag="VNN98_06685"
     tRNA            2285..2358
                     /locus_tag="VNN98_06685"
                     /product="tRNA-Cys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:2317..2319,aa:Cys,seq:gca)
     gene            2415..3296
                     /locus_tag="VNN98_06690"
     CDS             2415..3296
                     /locus_tag="VNN98_06690"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61819.1"
                     /translation="MIRISTTAACLSALIAFSAPAALAADILIKDAKSQPESLAAAPD
                     GTLIVGSASTPYVYKIKPGSTTPEVFIDASAEGPGTFFFGQLVDGGTVWSCMLTPVAG
                     VTPTQRHTALIGSDLKTGKRMLRWDLPGANSTCNDFTVGPDKALYISDTGNAKIYRLA
                     PGAQSAELWLEHRNLTGIDGLTFLNGVMYINSVFFNNLYRVPVDAAGKPGTPVQIWMD
                     APVKGPDGMRAVGNMLLHAENGAGKVDSLTINDDTAHVTVLKDGLNQPTGVEPAGNMI
                     WIAERGAGKAVSIPMPK"
BASE COUNT          643 a         1199 c         1178 g          654 t
ORIGIN      
        1 gaaagtcttg tcgagcatag gtgcgcaaat gcggagaatt tgcgctgggg tcaagcccag
       61 aggggtggct ccccccttac ccgcggtcgc ttcgctccct tgccctctcc ccctcagggg
      121 gagagggaag agtgctcgca ccagcgagca cgagggtgag ggagactttt ctgcgaagaa
      181 tcagcgcttg gtaccgcggg cctttaccac ccgttcgact tcagcacgga cggcgccttc
      241 cagcagggcc gggaaatgct cgtccatcca ttcgcggatc aagggcttca tgcggtcgat
      301 cacggcagcg gaattgtcgg acaggtactt ctgcagcacc ggctcgaagc tttcgcgcac
      361 ggcgcgctcg aacacattct ccacgctggc gccatccacc ggcgccaagg gggcggagcg
      421 ggacggcgcc ggggcagcgg caggctcttc gggaatgctg tcaaacgcgt cttccatcgc
      481 cttgcgggta tggtcggaga agatgtcggc atgttcggcc ggggccggcg ggacgacatt
      541 ttcaaacacc agatcctcgg ccggtaccgg gatcggggcg ggcggcgtcg gaggcggcgc
      601 gacatagacc ggcgcggctt cgacttcctg ggtcagttcc agcacatcat catgtacggg
      661 caacggggcc gccggcatgg acggtgcagc agcaggcgcg gcttcggggg ccggcgcctc
      721 cggggcgtct tccgagataa tcttgcgaat ggaggcaagg atttcctcca tggtaggttc
      781 gtgctgaggg ttcgacatcg gcagctccgc ggacccgcca aaggtttggt ggggatattt
      841 cagcctagga tagtgacggg ctgtcggcaa agatagagtt aacgcggacc agggttaacg
      901 cagcggcctt ttgcccccag ggtgccgccc cggggaatgc gtctagaaca cgaatcccat
      961 ggccttttta aagcccgcca gcagggggac atcggcgtca aaatcggggc gtttgccgat
     1021 ttggccgttc tccttgagga acagccaggc acggctctga ccgtccttca gcaccgccac
     1081 cagccggccc ccctcggcca gttgggacag cagggtttcg ggcgcctgct ctatggcgcc
     1141 attgacgaag atcacatcga atggcgcctg gcctttgacg ccctcgatca atccgccctg
     1201 caccagttca accttgccca caacatttgc cagcaactcg ctggcgatac ggaccaaatc
     1261 ggcatcctgc tccagggcga tcacctcagc ggccagccgc gccaggacgg cggcggaata
     1321 gccggtgccg cagcccacat ccagcacccg gtcccctgcc ttgatctggg ccagctgcaa
     1381 cagtttggcg aagctgcgcg ggtctagcag atagcggccc tgggcgaccg ctaccggcac
     1441 gtcggcataa gccagggcgc gcgcggcgct gggcacgaac ttctcgcggg ccaccgcgct
     1501 catcgccgcc aggatgcgcg gatcggtgac attggaggtg cggacctgcg cctcgatcat
     1561 gttgaagcgc gcggattcgg acatatgcga acggcctttg cgaaagcatc ccgcttatag
     1621 ggcccgggtc cagtcctgac aatgtgaccg cttgacggcc gccgcgccag cgcgaaccat
     1681 gcgctttttg gagggaaaga tcatgatcgg ttatgtcacc ttgggcaccg ctgatttgac
     1741 gcgcggcgcg actttttatg acgccatcgc caaggaactg ggcgtggggc ggatgatgga
     1801 gaatgaccag ttcatcgcct ggggcatccc cggcggggcg gcaggcatcg ggctgaccaa
     1861 gccgttcgac ggcaacccgg ccacggtcgg caacggcgtc atggtggcgc tgggggccaa
     1921 ggaccgggcg caggtggacc ggctccatgc gctggcgcta tcgctgggcg gcacttgcga
     1981 aggcccgccc ggaccgcgcg gcgaaggctt ttatgccgcc tatttccgcg atctggacgg
     2041 caacaagctc aatgcttttg taatgagttg aggcgcgacc ggcgtagccg ggcaaatcgg
     2101 tgttcggctc tcgaaaaggt ccgactggac cttttcgccg ccttcggcgg acgcgcctca
     2161 aggaccgatt tgagcactca acgcgccgag cttgggcgag gcgccggggc gggttgtggg
     2221 gggcggcggc tttctgttat agccgccagc cgctgaccgg accctgtccg gcgcaaattc
     2281 ctgaggccac gtggcggagt ggttacgcag aggactgcaa atccttgtat cccggttcga
     2341 ttccgggcgt ggcctccaca aaacgtccga ttttgcgcta taagctcccc caaagaacca
     2401 aggggagagt tttcatgatc cgcatttcga ccaccgccgc ctgcctgtcg gcgcttatcg
     2461 ccttctcggc gcctgccgcc ctcgccgccg atatcctgat caaggacgcc aaatcccagc
     2521 ccgaaagcct ggccgctgcg ccggacggca ccttgatcgt gggcagcgcc tccacgccct
     2581 atgtctacaa gatcaagccc ggctccacga cgccggaagt cttcatcgac gccagcgccg
     2641 aaggccccgg caccttcttt ttcggccagc tggttgatgg cggcacggtg tggagctgca
     2701 tgctgacccc ggtggccggc gtaacgccga cccagcgcca taccgcgctg atcggcagcg
     2761 acttgaagac cggcaagcgc atgctgcgct gggacctgcc gggcgccaac agcacctgca
     2821 acgacttcac cgtcggcccc gacaaggcgc tctacatttc cgacaccggc aatgccaaga
     2881 tctatcgcct ggcgccgggc gcgcagtctg ccgagctctg gctggaacat cgcaacctga
     2941 ccggcattga tggcctcacc ttcctgaacg gcgtgatgta catcaacagc gttttcttca
     3001 acaatctcta ccgcgttccg gtggacgccg ccggcaagcc cggcacaccg gtccagatct
     3061 ggatggacgc gccggtcaag ggaccggacg gcatgcgcgc cgtgggcaac atgctgctcc
     3121 atgccgaaaa cggcgcgggc aaggtggact cgctcaccat caatgacgac accgcccacg
     3181 tcaccgtgct caaggatggc ctgaatcagc cgaccggcgt tgagcccgcg ggcaacatga
     3241 tctggatcgc cgaacgcggc gccggaaagg ccgtgtccat tcccatgccg aagtagcccc
     3301 ctccgatccg gccttcgcgc ctgggggcgc tcggcgttcg gttggcttgg tcgccaacct
     3361 cacccttcgc tggctcgaga gccagctacg ggcacctccc ccatgcaagc gcgcttcgcg
     3421 cgcgcggggg aggcagcccc tccggtcttc gcggggccga gtcggcccct ccccgcccgg
     3481 cttttgtggg gcggcggaac tttattcgca atttggccgt cacggttaag gccctgttaa
     3541 ccgtccgggg tgcatggtcc cagcgtcttc cttgaagaca ccccaccatt acccaacgcc
     3601 ttggggccgg gatcactccc ggcctcattt ttctttggga cagcgctgga tagttgaccc
     3661 gatggcgggt caga
//
LOCUS       DATMDK010000344         3080 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1757895,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000344 DATMDK010000000
VERSION     DATMDK010000344.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3080)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3080)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3080
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1757895"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..219)
                     /locus_tag="VNN98_06695"
     CDS             complement(<1..219)
                     /locus_tag="VNN98_06695"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase"
                     /protein_id="HWM61820.1"
                     /translation="MSNLVSTEWLADHLSDVRVVDASWYMPDEKRNPAAEFEAGHIPG
                     AVFFDIDAIADHETSLPHMLPKPGEFSAA"
     gene            complement(216..1262)
                     /locus_tag="VNN98_06700"
     CDS             complement(216..1262)
                     /locus_tag="VNN98_06700"
                     /EC_number="2.5.1.47"
                     /inference="COORDINATES: protein motif:HMM:NF007989.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine synthase A"
                     /protein_id="HWM61821.1"
                     /translation="MPANPQVKQDVIAAIGNTPLIRLRQASEATGCEILGKAEFLNPG
                     QSVKDRAALFIIQDAVRRGVLRPGGTIVEGTAGNTGIGLATVANALGFKTVIVIPDTQ
                     SQEKKDALRLMGAALIEVPAVPYKDPNNYVKLSGRLAEQLAKTEKNGAVWANQFDNVA
                     NRQAHIEGTGPEIWEQTGGKVDGFTCAVGSGGTLGGVAIALKERNKQVQIAAADPLGA
                     AIYSWIKTGKLESHGSSITEGIGQGRVTANLEGAPFDDAYQIPDEEALPIVFDLLEHE
                     GLCMGGSTGINVAAAIRMAKDMGPGHTIVTVLADYGNRYQSKLFNPAFLRDKSLPCPP
                     WLVEQRAPISVPFA"
     gene            complement(1309..1905)
                     /locus_tag="VNN98_06705"
     CDS             complement(1309..1905)
                     /locus_tag="VNN98_06705"
                     /EC_number="3.2.2.20"
                     /inference="COORDINATES: protein motif:HMM:NF015319.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008725 - DNA-3-methyladenine glycosylase
                     activity [Evidence IEA];
                     GO_process: GO:0006284 - base-excision repair [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-3-methyladenine glycosylase I"
                     /protein_id="HWM61822.1"
                     /translation="MPEKTRCTWPGEDPPYVAYHDKEWGVPEYDPRGLYEKLVLDGFQ
                     AGLSWITILRKRENFRKAFHNFAPEKIARYNARDLDRLLKNDGIIRSRAKIEAAIKGA
                     KLWLEIEEKEPGGFRDLIWKHVDGKPRQNKFKVTSQIPAQTEMSEGLAKELKQRGFNF
                     CGPVIVYAFAQAVGMVNDHLTVCFRHEECARLAKVPKR"
     gene            complement(1909..2736)
                     /locus_tag="VNN98_06710"
     CDS             complement(1909..2736)
                     /locus_tag="VNN98_06710"
                     /inference="COORDINATES: protein motif:HMM:NF013720.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61823.1"
                     /translation="MEPAFLDDRAVLAISGPQARDFLQGLVTNDVAGGLAPGNGLYTA
                     LLSPQGKILFDFLVTEGDGALLLDVAKVASDALLKKLKIYRLRAKVDVEPREQLHVYV
                     NLKGHPDNRLASYADRAITFADPRVAALGLRSIGAAAEMPGNLQSPREYHEMRLALGV
                     PEGGDFGFEKIFALDAGLDELHGISFTKGCYIGQELTSRMKHRATSRKRILTVTADVP
                     LPASGPVTKGGLEIGELISSHGGTAFALVRLDRLEEARGDVAAAQISVALRKPSWLA"
     gene            2803..>3080
                     /locus_tag="VNN98_06715"
     CDS             2803..>3080
                     /locus_tag="VNN98_06715"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61824.1"
                     /translation="MSLFEPKTFDLLIRGGTVATPNGIAPADIGVIAGRIAAIGSLAG
                     AKSAEIFEAKGLHVLPGVIDSQVHFREPGNAHKEDLASGSLAAILGGVT"
BASE COUNT          539 a          966 c          958 g          617 t
ORIGIN      
        1 ggcggcggag aattcgcccg gcttcggcag catgtgcggc agggaggttt catgatcggc
       61 gatggcgtca atgtcgaaga acaccgcacc ggggatatgg ccggcctcga attccgcggc
      121 cggattgcgt ttctcgtcgg gcatgtacca ggacgcatcc accacccgca catcgctcag
      181 gtgatcggcc agccattcgg tggaaaccag attgctcatg caaaaggcac tgatattggc
      241 gcccgctgct ccacgagcca gggcgggcag ggcaggctct tgtcgcgcag gaaggccgga
      301 ttgaacagct tggattgata gcggttgccg taatcggcca gcacggtgac gatggtgtgg
      361 cccgggccca tatccttggc catgcggatg gcggccgcga cattgatgcc ggtggaaccg
      421 cccatgcaca ggccttcatg ttccagcaga tcgaacacta tcggcagcgc ttcttcatcg
      481 ggaatttgat aggcgtcgtc gaatggcgcg ccttccagat tggcggtgac ccggccctgg
      541 ccgatgcctt cggtgatgga gctgccgtga ctttccagtt tgccggtctt gatccagctg
      601 tagatcgccg cacccagcgg atcggcggcg gcgatctgca cctgcttgtt gcgctctttc
      661 agcgcgatag cgacgccgcc caaagtgccg ccgctgccca cggcgcaggt gaagccgtcc
      721 accttgccac cggtctgctc ccagatctcc gggccggtgc cttcgatatg agcctggcgg
      781 ttggcgacat tgtcgaactg attggcccag accgcgccat tcttctccgt cttggccagc
      841 tgttccgcca gccggcccga cagcttcaca taattgttgg ggtccttgta gggcacggcg
      901 ggcacttcga tcagtgccgc gcccatcagg cgcagtgcgt cctttttttc ctggctctgg
      961 gtatcgggga tcacgatcac ggtcttgaag cccagcgcgt tggccacggt ggcaagcccg
     1021 atgccggtat tgccggcggt gccttcgacg atggtgccgc cgggacgcaa gactccgcgc
     1081 cgcaccgcgt cctggatgat gaacaaggcg gcgcggtcct tcaccgactg accgggattg
     1141 aggaattccg ccttgcccaa aatttcacag cccgtcgcct ccgatgcctg gcgcaggcgg
     1201 atcagcggcg tgttgccgat ggcggcgatg acgtcctgtt tgacttgtgg gtttgctggc
     1261 atgacggcga acctaatggg gggctgttgc gccttcaagg ctcaagcgtc agcgcttcgg
     1321 gactttcgcc agccgggcac attcctcatg ccggaagcag acggtgagat gatcgttgac
     1381 catgccgacg gcctgggcga acgcgtaaac gatcaccggg ccgcagaaat tgaagccgcg
     1441 ctgcttcaat tccttcgcca gcccctcgct catctcggtc tgggccggaa tctggctggt
     1501 gaccttgaac ttgttctggc gcggcttgcc gtcaacatgt ttccagatca ggtcgcggaa
     1561 accaccgggt tctttttcct cgatctccag ccacagcttg gcgcctttta tggccgcctc
     1621 gatcttggcg cggctgcgga tgataccgtc attcttgagc agccggtcca gatcgcgcgc
     1681 gttgtagcgg gcgatttttt cgggcgcgaa attatggaag gctttgcgga aattctcccg
     1741 cttgcgcagg atggtgatcc aggacagccc cgcctggaat ccgtccagta ccagtttttc
     1801 ataaaggccg cggggatcgt attcgggcac gccccattcc ttatcgtgat aggcgacgta
     1861 gggcgggtct tcccccggcc aggtgcagcg tgtcttctca ggcatcgctt aagccagcca
     1921 tgacggcttg cgcagcgcaa ccgaaatctg cgcggcggcg acatcgcctc gggcttcctc
     1981 cagccggtcc agccgcacca gcgcaaaggc tgtgccgcca tggctggaaa ttagctcgcc
     2041 gatctccagc ccgcccttgg tgacaggccc agacgcaggc agcggcacgt ccgccgtcac
     2101 ggtgagaatg cgcttgcgcg aggtggcgcg atgcttcatc cgcgaggtca gttcctggcc
     2161 gatatagcaa cccttggtga aggaaatgcc gtgcaattcg tccagcccgg catccagggc
     2221 gaagattttc tcgaagccga aatcgccgcc ttccggcaca cccagtgcca ggcgcatctc
     2281 gtgatattcg cgcgggcttt gaagattgcc cggcatttcc gcagctgcgc cgatgctgcg
     2341 caggcccaat gcggcgaccc gcggatcggc gaaggtgatg gcgcgatcgg cgtaagatgc
     2401 cagccggttg tcgggatggc ccttgagatt gacatagacg tgcaactgct cgcgcggctc
     2461 gacatccacc ttcgcccgca atctgtagat cttcaatttc ttcagtaggg cgtcgcttgc
     2521 gactttcgcc acatccagca gcagcgcacc atcgccttcg gtgacaagaa aatcgaacag
     2581 gatcttgccc tggggcgaca gcagggctgt gtacaacccg ttgccgggcg ccagcccgcc
     2641 ggccacgtcg ttggtaacca agccttgcaa aaaatcgcgc gcctgcggcc ccgaaatggc
     2701 cagaactgcg cggtcgtcga gaaaggcggg ctccatcccc ctcaattagg ccgggtctgt
     2761 gcggttgcca agggcaggag gcctaggcta actgccgagc ccatgagcct ttttgagcct
     2821 aaaaccttcg atctgttgat tcgcggcggc accgtggcca cgccaaacgg cattgcccct
     2881 gctgacatcg gggtcatagc cggacgtatc gccgccattg gttcactggc gggcgccaaa
     2941 tcggccgaga ttttcgaggc caagggcctg catgtcctgc ccggcgtgat cgacagccag
     3001 gtacatttcc gcgaacccgg aaacgcccat aaggaagacc tggccagcgg cagcctggcg
     3061 gcgatcctgg gcggcgtcac
//
LOCUS       DATMDK010000345         2724 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1301604,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000345 DATMDK010000000
VERSION     DATMDK010000345.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2724)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2724)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2724
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1301604"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..338)
                     /locus_tag="VNN98_06720"
     CDS             complement(<1..338)
                     /locus_tag="VNN98_06720"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61825.1"
                     /translation="MARREKREPIAYILGRKEFWSLDFEVGPGVLVPRPDTETLIEEA
                     IRLVPDRSAPLRIADLGAGSGAILIAALKEFSHATGIGFEASPQAYDYASRNAARLIG
                     ARAEIRLAEW"
     gene            complement(641..1717)
                     /gene="prfA"
                     /locus_tag="VNN98_06725"
     CDS             complement(641..1717)
                     /gene="prfA"
                     /locus_tag="VNN98_06725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016290999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016149 - translation release factor
                     activity, codon specific [Evidence IEA];
                     GO_process: GO:0006415 - translational termination
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 1"
                     /protein_id="HWM61826.1"
                     /translation="MIPTAKLERLLDRFSALESEMASGASGAAFVKLSREHAELAPVI
                     QAAREYRSAQTQLEQTEALIADPDSDMRGMAEQERADLRSRLAALDRELQIQLLPRDA
                     ADASSAIVEIRAGTGGDEAALFAGDLLGMYQRYCGLQDWKTEVLSLSESDLGGFKDAT
                     LEVVGRGVYAKLKFESGVHRVQRVPATETQGRIHTSAATVAVLPEAEDVDIVIHDKDL
                     RIDTYRAQGAGGQHVNKTDSAVRITHLPTNTVVAMQEEKSQHKNKAKAMTMLKAKIYD
                     AERKRVDAERASERKSLVGSGDRSERIRTYNFPQGRVTDHRINLTLYNLSRIMSGDGL
                     GEIVDALVAQDQADRLAEFEAADT"
     gene            complement(1839..>2724)
                     /gene="ispG"
                     /locus_tag="VNN98_06730"
                     /gene_synonym="gcpE"
     CDS             complement(1839..>2724)
                     /gene="ispG"
                     /locus_tag="VNN98_06730"
                     /gene_synonym="gcpE"
                     /EC_number="1.17.7.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017490183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046429 - 4-hydroxy-3-methylbut-2-en-1-yl
                     diphosphate synthase activity [Evidence IEA];
                     GO_process: GO:0044237 - cellular metabolic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="flavodoxin-dependent
                     (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase"
                     /protein_id="HWM61827.1"
                     /translation="DIHFHYKRAIEAAVNGAACLRINPGNIGSPERVREVVQAAKDHG
                     CSMRIGVNAGSLEPDLLEKYGEPCPEAMVESALNHAKILDDLDFREYKISVKASDPFL
                     AVAAYQALSEAIDCPLHVGITEAGGMISGTVKSSIGMGMLLWSGIGDTIRVSLSADPV
                     EEVRVGFDILKSLNLRHRGVNIVSCPSCARQGFNVIDTVRTLEEKLKHIATPMSLSII
                     GCVVNGPGEARETDLAFTGGGAGKGHGMIYLNGKPAYKLGNEDLVSHVVELCEKKATE
                     IEAQRNGQTGQNPLEAAQ"
BASE COUNT          467 a          875 c          846 g          536 t
ORIGIN      
        1 tcccattccg ccagccggat ttcggcacgg gcgccgatca aacgcgcggc attgcggctg
       61 gcataatcat acgcctgggg tgaggcttca aagccgatgc cggtggcatg ggaaaactcc
      121 ttcagcgcgg caatcaggat ggcgcccgat ccggcgccca gatcagcgat gcgcaggggc
      181 gcgctgcgat ccggcaccaa ccgtatcgct tcctcgatca aggtttcggt atcgggacgc
      241 ggcaccagca cccccggacc gacctcgaaa tccaggctcc agaattcctt gcggccaagg
      301 atgtaagcga tgggctcgcg tttttcgcgg cgagccacca gcagttcaaa ccgcgccaga
      361 acgtcaccct ccccttgagg gagggtcgaa atttgcgcag caaatttcgg ggaggggtca
      421 tcttcggcgg cggcagcccc ctccccgaaa aatcctcgca cactcggatt tttcgacccc
      481 acggcgtcgc ttcgctccgc gtccgatacg ctgtcgctat cggacccctc aaggggaggg
      541 tcgaattgct gagcgtgttg ccaaaggagc cgagcatcca gtcgcgcggt atcactgcct
      601 gctgccgcga gccgcttggc ggcttccaga acgacgtcgt tcacgtatcc gccgcttcga
      661 attccgccag gcggtcggct tggtcctggg ccaccagcgc atcgacgatc tcgcccagcc
      721 cgtcgccgga catgatgcgc gacaggttgt agagcgtcag attgatgcgg tgatcggtga
      781 cccgcccctg cgggaaattg taggtgcgga tgcgctcgct gcggtcgccg ctgcccacca
      841 ggctcttgcg ttcgctggct cgttcggcat caacacgctt gcgctcagca tcgtagatct
      901 tggccttcag catggtcatc gccttggcct tattcttgtg ctgggacttt tcctcctgca
      961 tcgccaccac ggtgttggtg ggcagatggg tgatgcgcac cgcactgtcg gtcttgttga
     1021 catgctggcc gccggcgccc tgggcccggt aggtgtcgat gcgcaaatcc ttgtcatgga
     1081 tcacgatgtc gacatcctca gcttccggca gcaccgccac cgtggccgcg ctggtatgga
     1141 tgcgcccttg ggtttccgtg gcgggcacgc gttgcacccg gtgcacgccg ctttcgaatt
     1201 tcagcttggc atagacgccg cggcccacca cttccaaggt ggcgtccttg aagccgccca
     1261 ggtcgctttc cgacagcgac agaacttcgg tcttccagtc ctgcaacccg caatagcgct
     1321 gatacatgcc cagcaagtcg ccggcaaaca aagccgcctc gtcgccgccg gtgccggcgc
     1381 ggatttccac gatggccgag gaggcgtccg ccgcatcgcg cggcagcagc tgaatctgca
     1441 attcgcggtc cagggcggcg agacggctgc gcaaatcggc gcgttcctgc tcggccatgc
     1501 cgcgcatgtc ggagtcggga tcggcgatca gcgcttcggt ttgctccagc tgggtctggg
     1561 cgctgcgata ctcccgcgcc gcctggatca ccggcgccag ttcggcatgt tcgcgggaca
     1621 gtttgacgaa ggcggcgccg gaggcgcccg acgccatctc gctttcaaga gccgagaaac
     1681 ggtcgagcag gcgttcgagc ttggcggtgg ggatcatttg ccctccctgt catggcccgc
     1741 aaatgcgggc cacccaggtg aaacagactc agttgggaga attaaaaagg aaattggatg
     1801 gcccggacaa gccgggccat gacgattaaa gatgacatct attgcgcggc ttctagcggg
     1861 ttctgcccgg tttggccgtt acgctgcgcc tcgatttcgg tggctttctt ctcgcacagc
     1921 tcgacgacat ggctcaccag atcctcgttg cccagtttat aggccggctt gccgttcaga
     1981 tagatcatgc catggccctt gcccgcgccg ccgccggtga aggccagatc ggtttcgcgc
     2041 gcttcgcccg ggccgttgac cacgcagccg atgatgctga gcgacatggg ggtggcgatg
     2101 tgcttgagct tttcttccag agtcctgacc gtgtcgatca cattgaagcc ctgccgcgca
     2161 caggacgggc aggacacgat attgacgccg cgatggcgca ggttcagcga cttgaggatg
     2221 tcgaaaccca cccgcacctc ttccaccgga tcggcggaca gcgagacgcg gatggtgtcg
     2281 ccgatgccgc tccacagcag catacccatg ccgatggagg atttgacggt gcccgagatc
     2341 atcccgcccg cctcggtgat gccgacatgc agcgggcagt cgatggcttc ggacagcgcc
     2401 tgataggcgg ccaccgccag gaagggatcg gacgccttca ccgaaatctt gtattcgcgg
     2461 aaatccaggt cgtccaaaat cttggcgtgg ttgagggcgc tttccaccat cgcttcgggg
     2521 caaggctcgc cgtatttttc caacaggtcg ggttccaatg atccggcatt gaccccgatg
     2581 cgcatggagc agccatgatc cttggccgcc tgcaccactt cgcgcacccg ctccgggctg
     2641 ccgatattgc ccggattgat gcgcaggcag gcggcaccgt tcaccgccgc ctcgatggcg
     2701 cgcttgtagt ggaaatggat gtcg
//
LOCUS       DATMDK010000346         4299 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1991390,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000346 DATMDK010000000
VERSION     DATMDK010000346.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 4299)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4299)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4299
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1991390"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..247)
                     /locus_tag="VNN98_06735"
     CDS             complement(<1..247)
                     /locus_tag="VNN98_06735"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61828.1"
                     /translation="MKKLALSFLFLFLPIVANSIACRAADSAWVQATASGFEARIVTA
                     AAACPTLHTDKGDTAMAVRAAASARFPLVCAAAIPAGA"
     gene            complement(277..2652)
                     /locus_tag="VNN98_06740"
     CDS             complement(277..2652)
                     /locus_tag="VNN98_06740"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HWM61829.1"
                     /translation="MRRGLVLLAAVSCVALAAASEARAQDVEAITVTGDPVHLLQTHA
                     NDTAFGLDKPLLETPRAVTLISDTTIARYGITGVNDLTAITPSAYTASYYGVEGSVSL
                     RGTLAENYFRGFKRAENRGTYSTPLGDAAGIEILRGPPSPIYGAGKVGGLVNFLPKTA
                     GANDALGGEVTLTYGSYSKRNATAQISAPVTIGEAAGGIHAYGELDDSFSFYRGLHPS
                     HQLIELSGGLALGAWSFAADYMYYHSNGDVQTPGWNRLTQALIDNGTYITGRNTSLKD
                     ADGNGRLTLNELGGNPYFFDPNFKPLACAGCTDAAHRLDSGLGTTTLDPRTVYIARGV
                     DFSNTATHTAFLEAANDLGDGQSLRLQLFGDTLQNDRFVSYGFPGSYRTQIGEARLRY
                     DLARDFGLLKTQTVAGGSYRIVHAIGKESFNSGVIALDRRDISQGPAANDIIDSPFNV
                     DPPGTIGLGWENDVRSNTADAGAFVTSDLTWDDSLDLTVGGRYDAYNVRSVDQGVLAY
                     EPAGGHGNAGRFTYSASLSYHTPWGLVPYVTTAKSAAIEIGQASQVLTSLLAGRDWLS
                     NSFLNEVGVKFTALDDHLQGSLDWYVQNRTQLNQGVGGITSVQGTRAKGAELELRYVA
                     TQNLSLTLAAGLQHTTIKGPDHSFAYAPARTYGITPQNGFGGSYVVYDFSTLPGKGGD
                     YEDTLLPHAVISPYVTWTSDAQSWGLWGASFGGTYVGKTQQTVPDPITYPSYVILNAS
                     AFAQWDVWEGDVNVNNLADARYFTPGADTYANLSALPGIGRVWKVTLKRLF"
     gene            complement(2755..3324)
                     /locus_tag="VNN98_06745"
     CDS             complement(2755..3324)
                     /locus_tag="VNN98_06745"
                     /inference="COORDINATES: protein motif:HMM:NF013053.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine hydrolase"
                     /protein_id="HWM61830.1"
                     /translation="MIDCQVDFGAQGGEMARRGADMTAAQAALVKAEALTGAARAASV
                     LVVFVRLLARGESKIAREARLRRGDDEPDLCVEGTRGADFIGPQPLAGDVIVSKTHFS
                     AFARTGLAEQLQAKELDTLVLAGLTTECCIQSSAWDAFEHDFHVFIAADACAAYEEAL
                     HHNALRVLELNGATVADSAEFTVLWKKPF"
     gene            complement(3363..>4299)
                     /locus_tag="VNN98_06750"
     CDS             complement(3363..>4299)
                     /locus_tag="VNN98_06750"
                     /inference="COORDINATES: protein motif:HMM:NF012517.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016705 - oxidoreductase activity, acting
                     on paired donors, with incorporation or reduction of
                     molecular oxygen [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HWM61831.1"
                     /translation="AEAEGFDFVMAMGKWRGFGGDTGHWGHSLEAVTMMAGIAAVTSR
                     VKVWTTLHAILHNPAVAAKMIATLDHISGGRAGLNIVAGTYRGEFEQMDAWDAALDHD
                     ARYDLTEEWTQILKRLWTEPKVSFDGKYFAFKDCVSEPKPLRPPFLICAGMSQRGFAF
                     SVREADGCFIGGRDEAETRDASRRARALAAELKKPIRTYCMMTVITAVTDAEAQAKAQ
                     NYRDGLDEGAVLGMLQSYGAPLSGEGGNAMTARSQGAFMTQTVVGAPATCAAQIERFL
                     RNCDIDGLMFVYDDYAEGLRVTGQQILPQLRRAFA"
BASE COUNT          799 a         1352 c         1368 g          780 t
ORIGIN      
        1 aggcgccagc cgggatcgcg gcggcgcaca ccaagggaaa cctcgcactg gcggcggcgc
       61 gcaccgccat tgcggtatcg cctttgtcgg tgtgcagcgt gggacaggcc gcagcagcgg
      121 tgacgatccg cgcctcgaaa ccggatgcgg tggcctgcac ccaggcgctg tccgcggccc
      181 gacaagcgat cgaattggca acaatgggta gaaacaagaa gaggaaagac agcgcgagct
      241 ttttcatcgg cgcggagcgt aaccgcgccg gcgcggttag aacaaccgct tcagggtcac
      301 tttccagaca cggccgatgc ccggcagggc gctgagattg gcataggtgt cggcgccggg
      361 ggtgaaatag cgcgcatcgg ccagattgtt cacattcaca tcgccctccc acacatccca
      421 ttgcgcgaag gcgctggcgt tcaagatgac atatgacgga tatgtgatgg gatccggcac
      481 ggtctgctgc gtcttgccga cataagtgcc gccgaagctg gcaccccaaa ggccccagga
      541 ctgcgcatcg ctggtccagg tgacataggg gctgatcacc gcatgcggca gcagcgtgtc
      601 ttcatagtcg ccgcccttgc ccggcaaagt ggaaaaatca tagaccacat aactgccgcc
      661 aaagccgttc tgcggcgtga tgccgtaggt gcgcgccgga gcataggcga agctgtggtc
      721 gggccccttg atggtggtgt gctgcaatcc ggccgccagg gtcaggctga gattttgggt
      781 cgcgacataa cgcagctcca gctcggcgcc tttggcgcgg gtgccttgca cgctggtgat
      841 gccgccgaca ccctggttca gctgcgtgcg gttctggaca taccagtcca ggctgccctg
      901 cagatgatcg tccagggcgg tgaacttcac tcccacttca ttgaggaagg aattggacag
      961 ccagtcgcgc cccgccagca ggctggtcag cacctggctg gcctggccga tctcgatggc
     1021 ggcggatttg gcggtcgtga cgtaaggcac caggccccag ggcgtgtgat aggacaggct
     1081 ggcggaatag gtgaagcgtc ccgcattgcc gtgtccaccg gccggttcat aggccagcac
     1141 gccctggtcc accgaacgca cattatacgc gtcgtaacgc ccgccgacgg tgagatcgag
     1201 actgtcgtcc caggtcaggt cgctggtaac gaaagcgccc gcgtcggccg tgttgctgcg
     1261 gacatcgttc tcccagccca aaccaatcgt gcccggcggg tccacattga acggcgagtc
     1321 gatgatgtcg ttggcggccg ggccctgaga tatgtcgcgg cggtccaggg cgatgacacc
     1381 gctgttgaaa ctctcttttc cgatggcatg cacgatgcgg tacgaaccgc ccgccaccgt
     1441 ctgggtcttg agcaggccga aatcgcgcgc caggtcatag cgcagccgcg cctcgccgat
     1501 ctgggtgcgg taggaaccgg gaaagccgta ggagacgaag cggtcgttct gcagggtgtc
     1561 gccgaacagt tgcaggcgca ggctctggcc gtcgcccaaa tcgttggcgg cttccaagaa
     1621 agcggtatgg gtggcggtgt tagagaagtc cacgccgcgc gcgatataga ccgtacgggg
     1681 atcaagcgtg gtggtaccca gcccgctgtc cagccggtgc gccgcatcgg tgcatccggc
     1741 gcaggccagg ggcttaaaat tgggatcgaa gaagtacgga ttacccccaa gctcgttcag
     1801 cgtgaggcgg ccattgccgt cggcatcctt cagcgacgtg ttgcgcccgg tgatataggt
     1861 gccgttatcg atcaacgcct gggtcaagcg gttccagccc ggcgtctgca catcgccgtt
     1921 ggagtggtaa tacatataat cggcggcaaa ggaccaggcg cccagcgcca gcccgcccga
     1981 cagttcgatc agctgatggc tgggatgaag gccgcgatag aagctgaaac tgtcgtccaa
     2041 ctcgccatag gcatggatgc cgcccgccgc ttcgccgatg gtgaccggcg cgctgatctg
     2101 ggccgtggcg ttgcgtttgg agtagctgcc ataagtaagt gtaacctccc cgcccagcgc
     2161 atcattcgcg ccggcggtct tgggcaggaa gttgaccagc ccgcccacct tgcctgcgcc
     2221 atagatgggt gacggcggcc cgcgcaaaat ctcgatccct gccgcgtcgc ccaagggcgt
     2281 ggaataggtg ccgcgatttt ccgcccgctt gaagccgcgg aagtaatttt ccgccagggt
     2341 gccgcgcaac gacacagaac cttccacgcc gtaatagctg gcggtatagg cggagggcgt
     2401 aatggcggtg aggtcattga ccccggtgat gccgtaccgc gcgatggtgg tatcgctaat
     2461 caaggtgacg gcgcgggggg tttccagcag cggcttgtcc aggccgaagg cggtgtcgtt
     2521 ggcgtgggtc tgcagcagat gcacgggatc gccggtgacg gtgatcgcct ccacatcctg
     2581 cgcccgcgcc tcacttgcag cagcaagtgc cacgcagctg accgccgcca gaagaaccag
     2641 gccccttctc atgggaccct acatagtcaa tcctgaggaa aatgctatgt aacattttac
     2701 atagctcctg cgatatcttg acttggcatc ccatcaattt gatatgccat tgttttagaa
     2761 gggttttttc cacaaaacag tgaactctgc actgtccgcc accgtcgcgc cgttcaattc
     2821 cagcaccctg agggcattgt gatgcagcgc ctcttcatag gcggcgcaag cgtctgcggc
     2881 gatgaagaca tgaaaatcat gctcaaaagc atcccaggct gaggactgaa tgcagcattc
     2941 ggtggtgagc cccgccagca ccagcgtgtc cagctctttc gcctgcaact gctccgccag
     3001 gccggtgcgg gcgaaggcac tgaaatgggt tttggagacg atgacatcgc cggccagcgg
     3061 ctgcggcccg atgaagtccg cgccgcgtgt gccttccacg cacaggtccg gttcgtcatc
     3121 gccccggcgc agtctggctt cgcgcgcgat tttgctttca ccgcgagcga gcagccgcac
     3181 gaacaccacc agcacactcg cggcgcgagc cgcgccggtg agcgcctcgg ctttgacaag
     3241 cgcggcctgt gctgccgtca tgtccgcgcc gcgccgcgcc atctcgccgc cctgcgcgcc
     3301 gaaatccact tggcaatcga tcacgataag cgcggttcgc gaaggagaaa tccaatcggg
     3361 cttcatgcga aggcccggcg aagctgcggc aggatttgct gcccggtgac gcgcaggcct
     3421 tcggcataat cgtcatacac gaacatcagc ccgtctatgt cgcagttgcg caggaagcgt
     3481 tcgatttggg cggcgcaggt ggcgggcgcg cccaccaccg tctgggtcat aaaggcgcct
     3541 tgcgaccgtg cggtcatggc attgcccccc tcacccgaca gaggggcgcc atagctttgc
     3601 agcattccca gcaccgcccc ctcgtccagc ccgtcgcgat agttttgcgc tttggcctgc
     3661 gcctccgcgt ccgtcacggc ggtgatcacg gtcatcatgc agtaagtgcg gatgggcttt
     3721 ttcagttccg ccgccagggc gcgggcgcgg cgcgaggcat cacgggtctc cgcctcgtcg
     3781 cggccgccga tgaaacagcc atccgcctcg cgtaccgaaa aggcaaagcc gcgctgggac
     3841 atgccggcgc agatcaggaa aggcgggcga agcggcttgg gctcactgac gcagtccttg
     3901 aaggcgaaat acttgccgtc gaagctgacc ttgggctcgg tccacagccg cttgagaatc
     3961 tgcgtccatt cctcggtcag gtcatagcgc gcgtcatgat cgagtgcggc gtcccaggca
     4021 tccatctgct cgaactcgcc gcgataggtg ccggccacga tattcagccc ggcacggccg
     4081 ccgctgatat gatcgagggt ggcgatcatc ttcgccgcca ccgccggatt gtgcaggatg
     4141 gcatgcaagg tcgtccacac cttgacccgg ctggtgacgg cggcgatccc cgccatcatg
     4201 gtgacggctt ccagactatg gccccaatgg ccggtgtcgc cgccgaagcc gcgccacttg
     4261 cccatcgcca tcacaaaatc gaaaccttcc gcttccgcg
//
LOCUS       DATMDK010000347         2858 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_3133899,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000347 DATMDK010000000
VERSION     DATMDK010000347.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2858)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2858)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2858
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3133899"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..669)
                     /locus_tag="VNN98_06755"
     CDS             complement(<1..669)
                     /locus_tag="VNN98_06755"
                     /EC_number="1.5.1.2"
                     /inference="COORDINATES: protein motif:HMM:NF015747.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004735 - pyrroline-5-carboxylate
                     reductase activity [Evidence IEA];
                     GO_process: GO:0006561 - proline biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0055129 - L-proline biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyrroline-5-carboxylate reductase"
                     /protein_id="HWM61832.1"
                     /translation="MAPAPKARKQIKEPILLVGAGRMGSALLKGWLARDAESIAVVEP
                     QPSAELRKLAKAKKISLFAAPSQVRQKPSVCVVAIKPQVLKGEAPALAEFAARGALMI
                     SIAAGTSVVALTKAWGSKVRIIRAMPNIPGAIGAGITGIYAAKGATAADKKHARVLLS
                     ALGETLWVSKEALIDSVTAVSGSGPAYLFLMAEALTEAGVAEGLPRAQAEKFARATVS
                     GAGAL"
     gene            complement(696..1202)
                     /locus_tag="VNN98_06760"
     CDS             complement(696..1202)
                     /locus_tag="VNN98_06760"
                     /inference="COORDINATES: protein motif:HMM:NF022182.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbjN domain-containing protein"
                     /protein_id="HWM61833.1"
                     /translation="MTITHLDDEPLDTLHPLDLLEGAVEANGWAFERAGRDELNLSVA
                     GKWSDHHFNFSWREDLQSLHLSSAFDMRISEGVRRQNVADLLMHVNAKLWIGHFDLWP
                     QDGTIIFRHAMIFPDAEASAAQCEALLNLALEACEHYYPAFQFVLWGGKTAEEAIAAA
                     VLECAGQA"
     gene            complement(1383..1634)
                     /locus_tag="VNN98_06765"
     CDS             complement(1383..1634)
                     /locus_tag="VNN98_06765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020045107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="accessory factor UbiK family protein"
                     /protein_id="HWM61834.1"
                     /translation="MAQTDNPFLDGVAKAFTDAAGMAQSVRTEIDTFVRQRLERLVAD
                     MDFVPRDEFEAVKAMAAKARTENEALAARVAALESKSNT"
     gene            1812..2690
                     /gene="lgt"
                     /locus_tag="VNN98_06770"
     CDS             1812..2690
                     /gene="lgt"
                     /locus_tag="VNN98_06770"
                     /EC_number="2.5.1.145"
                     /inference="COORDINATES: protein motif:HMM:TIGR00544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008961 -
                     phosphatidylglycerol-prolipoprotein diacylglyceryl
                     transferase activity [Evidence IEA];
                     GO_process: GO:0009249 - protein lipoylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prolipoprotein diacylglyceryl transferase"
                     /protein_id="HWM61835.1"
                     /translation="MIQALLPFPHIDPVLVHLGPLAIRWYALAYIVGIVLGWWGVLRM
                     LRQKALWAHPPFNGRPPATEDDIGDLVVWATFGVILGGRLGWVLIYGTILCGVTPDYA
                     QFCDGLPMGFLTDPLRIIAAWEGGMSFHGGLLGVVLAVWLFCRRRKLKMLPVADLCCA
                     FAPIGLFFGRIANFIKPELWGRVTDVPWAMIFPGGGPLPRHPSQLYEAALEGVLLFAL
                     LQIALRVFRAQERPGLISALFFLGYGIFRFICEFFREPDTQFIGPVSMGMALSIPVWL
                     AAGALFWIAYKKPKTA"
BASE COUNT          473 a          959 c          866 g          560 t
ORIGIN      
        1 caacgcgcca gcgcccgaca cggtggcgcg ggcgaatttc tcggcctggg cccgcggcag
       61 gccttccgcc acacccgcct cggtcaaggc ttccgccatc aggaacagat aggcgggacc
      121 ggagccggat accgccgtga cgctgtcgat caacgcttcc ttgctgaccc acaaagtttc
      181 gcccagtgcc gacaacaaca ccctggcgtg ttttttgtct gccgctgtcg cgccctttgc
      241 tgcgtaaatt ccggtgatcc cggcaccgat ggcgcccggt atgttgggca tggcgcggat
      301 gatgcgcacc ttgctgcccc aagccttggt cagcgccacc accgaagtgc ctgccgcgat
      361 ggaaatcatc aacgcgccgc gcgcggcaaa ttccgccaag gctggcgctt cgcctttcaa
      421 cacctgcggc ttgatcgcca ccacacagac ggagggtttt tgccggacct gggatggcgc
      481 cgcgaacagt gaaattttct tcgccttggc cagcttgcgc agttcggccg aaggttgagg
      541 ctcgaccacg gcgatggatt cggcgtcgcg cgccagccag cccttgagca gcgcggaacc
      601 cattctgccc gcaccaacga gcagaatggg ttcctttatt tgtttgcgcg ccttcggcgc
      661 gggggccatg cggccggcgc caacaagaac aacactcacg cttggccggc gcactccagc
      721 accgccgccg cgatggcctc ttcggccgtc ttgccgcccc acagcacgaa ctggaaggcg
      781 gggtagtaat gctcgcaggc ttccagcgcc agattaagca gcgcctcgca ttgggcggcg
      841 ctggcttcgg cgtcggggaa gatcatggcg tggcggaaga taatggtgcc gtcctggggc
      901 cacagatcga aatggccgat ccacagcttg gcgttcacat gcatcaacag gtcggcgaca
      961 ttctggcgcc gcaccccttc gctgatccgc atgtcgaagg cgctggacag gtgcagggac
     1021 tgcaggtcct cccgccaaga aaaattgaag tggtggtcgc tccatttgcc cgccaccgac
     1081 aggttgagct cgtcccggcc cgcccgttca aaagcccagc cattggcctc caccgccccc
     1141 tccagcaagt ccagcgggtg cagggtgtcc agcggctcgt cgtccaggtg ggtgatggtc
     1201 atggggcaac actccaaggt gcttcggcca caaaacgaag cagttgcgat ccaaactggc
     1261 acaagattta gagaaaacaa gagtccggga gtcctcatcc cctcttgcgg gaaagattcc
     1321 acagctttga atcgtcacgg agattcacaa ggaaaagaat cgaaatgact ccccatggac
     1381 tcctaagtgt ttgatttgga ttccaaagcc gccacccgtg ccgccagggc ctcgttctcg
     1441 gtgcgggcct tggcggccat ggccttgacc gcctcgaatt cgtcgcgcgg cacgaaatcc
     1501 atgtcagcca ccagccgctc cagccgctga cgcacaaatg tgtcgatctc ggtccgcacg
     1561 ctctgggcca taccggcggc gtcggtgaag gccttcgcca caccgtccag gaagggattg
     1621 tcggtctgcg ccatgaaaac ctccactttg cctgcctata tggcgggcgc gggcagggct
     1681 cgcaagcttg cccgctcttt ttttgggtcg cacgggcgac gctcctcgct tcgctcgttg
     1741 ccacgctggc gctagcaacc ccgatgctcc cggcttgaca caagcggcga agcatcccgt
     1801 tttacccgcc catgatccag gccctgctgc ccttccccca catcgacccc gtgctggtgc
     1861 atctgggacc gctggcgatc cgctggtacg ccttggctta tatcgtgggc atcgtgctgg
     1921 gttggtgggg cgtgctcagg atgctgcggc agaaggcgct gtgggcgcat ccccccttca
     1981 acggccgtcc gcccgccacc gaggacgata tcggcgacct ggtggtgtgg gcgaccttcg
     2041 gcgtcatcct gggcggacgg ctgggctggg tgctgatcta cggcaccatc ttgtgcggcg
     2101 tcacccccga ctatgcccag ttctgcgacg ggctgccgat ggggttcctc accgatcccc
     2161 tgcgcattat cgccgcctgg gaaggcggta tgtccttcca tggcggcctg ttgggcgtgg
     2221 tgctggcggt ctggctgttc tgccgccgcc gcaagctcaa gatgttgccg gtggcggacc
     2281 tgtgctgcgc cttcgccccc atcggcctgt tcttcggccg catcgccaat ttcatcaaac
     2341 ccgaattgtg gggccgggtc accgatgtgc cttgggcgat gatcttcccc ggcggcgggc
     2401 cgctgccgcg ccatcccagc caattgtacg aagcggcgct ggaaggcgtg ctgctgttcg
     2461 cgctgctgca gatcgcgcta cgcgtcttcc gcgcccagga acggccgggc ctgatctcgg
     2521 cgctgttctt cctgggctac ggcatcttcc gcttcatctg cgaattcttc cgcgaacccg
     2581 atacccaatt catcggcccg gtcagcatgg gcatggcgct gtccattccg gtctggttgg
     2641 cggcgggcgc cctgttctgg attgcgtata aaaagccaaa aaccgcatga gactgctcca
     2701 tgtctcttag ggcacgcatc gccgccttga tcgaggccca gggcccgatg tcggtggcgc
     2761 agttcatgac catcgccttg ctcgatcccc aggacggcta ttacgccacc cgcgacccca
     2821 tcggtgccgg cggcgatttc atcaccgccc cggaagtc
//
LOCUS       DATMDK010000348         9098 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_3136280,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000348 DATMDK010000000
VERSION     DATMDK010000348.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 9098)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9098)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9098
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3136280"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2732
                     /locus_tag="VNN98_06775"
     CDS             <1..2732
                     /locus_tag="VNN98_06775"
                     /inference="COORDINATES: protein motif:HMM:NF024180.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="CHAT domain-containing tetratricopeptide repeat
                     protein"
                     /protein_id="HWM61836.1"
                     /translation="LPAGDAARRGAVAAAIRGLPADGSAAGLRCDGGKSLDPSTLLYS
                     CNAGVGDAPHVVLAAVTPRGLFLADGLPGMINVLSAAIAAQSGAPVSGASAAAAAVRS
                     SFAPPVLNANVNAYSGYLQLRSAGSRASARGNYPAAEQAYRDALDIETRLFGPDSAAV
                     GATLIELALQISNQQRFDEAAALFRRATPIIEASPSPEIRARLASYRGLDAANQRHYE
                     EALRYARQDTAARQAAVDAVRNGGLDMNGNVPVVPTLLDGELAHALRVQATLELRNGN
                     IAGAQASAGKALYIITAHPDLPLAWRADMVSLMGEINARQGRVVIAERDFIDALGMDR
                     KLFGDGGPTILALLQLGRFYSDEQVYPSAIVSYREAFTLLAKDPLTRSQIVADQIVPF
                     LTAASASLGAADRARLESEMFAASQMTDAGVAGQTIARMAARRAAETPALAEEVRAAD
                     DAARGRDDLRMQLAVEHAKANGERDTGREAALAAQLSTATARAGDLDAKLHKDFPAYA
                     GMADPGAVTLEAMKRVLHPREAFAGFVIGVRASYVLLVTRDGLTVKQVQTNSDDLAAD
                     IADLRGAFVPKLGKLPDFSLANAASLYNETLGPVSPQLAGMDHLVVAASGDLASLPFS
                     LLVTAAPAGARDYVNAAWLIRQTAVSETPSARAFMALRAAPKTAPPKPFLGIGNPNFQ
                     GGNQALALNALAGACSAGGPTDPALLRALQPLPETAAEVQAVGRDLGATPDDILLGDA
                     ATETAVRAKSLDQYAVLYFATHGMLPGELHCQAQPGLVLSPPASPAQSTAADGLLTAS
                     EIAGLKINANLVVLSACNTGAGGGKSFGGGALQGLADAFFNAGAHAVLASHWEVPSAA
                     TMSLMTVTFANMAKDPKHDAAEALRQAQLALIAQGPTAHPFEWAAFTLIGDGA"
     gene            2763..3476
                     /locus_tag="VNN98_06780"
     CDS             2763..3476
                     /locus_tag="VNN98_06780"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61837.1"
                     /translation="MMKSKLILTLATVLLCGCMAQSASAAVLVVAEARGIALKPGATL
                     DSTKPLTLKQGQHVTLISETGSTLKLDGPYDRPPTAGGGGGGVGLNQTLAALVTQRTS
                     RAGEFGVTRGTVLADLPDPWVLDATHSGNVCLLEKGTPTFWRPDSKAVASLAVAPADH
                     SWNAKAQWPVGQDRIAITTDVPMKAGETYVVTFNGTESAVTIVQLPASLTNTEMRAGW
                     MANRRCEQQAQALLKTTSP"
     gene            3473..5458
                     /locus_tag="VNN98_06785"
     CDS             3473..5458
                     /locus_tag="VNN98_06785"
                     /EC_number="4.6.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF017076.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009975 - cyclase activity [Evidence IEA];
                     GO_function: GO:0016849 - phosphorus-oxygen lyase activity
                     [Evidence IEA];
                     GO_function: GO:0032555 - purine ribonucleotide binding
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate/guanylate cyclase domain-containing
                     protein"
                     /protein_id="HWM61838.1"
                     /translation="MKALFTGTGAQRRNALRSAAIFVAVSLVSAAVSLFLVDNFSVLS
                     RVDQFVQDWEIAGTFARPEAQDSDIVIVAVDEATLAQFPYRSPIDRQFLSTLIQKIAS
                     HQPALIESDFLLDQPTEQTKDIALAKTLRDTKVPLVISYVADKNAVTPEQKAFEDIMV
                     PLKLRAMADQPTDQFGTARAVYPGKVVDGHYIAGVARAVAAKLGVKTPAQEVPIIWHG
                     RPAPSELDRDPKFFKQYSAATAAFMPEAWYRGKIVLIGSDVTLVDRHRTPFSVFLPGE
                     AGELPGIVIQAHALSQLIHHKISPVPGWQVDFAITLALAFLGAALGVISASLIWRAVA
                     LILFLPLFWAGGVALYHYANLMVGLMSPALAMVISFASMESLSGREARKQKAFIQGAF
                     SRYVSPAIVDRMVADPSRMSLEGERREMTFLFSDIADFTAMSEQIEAVQLAHVLNNYL
                     DGMTNLVMKHGGMVDKFIGDAVFAIFNAPLDLAEHQEKAVRCMLDMDNFSQEYRKKQH
                     AEGVPLGITRIGVHTGVAVVGNFGSHARFTYTASGDAVNTAARLEGINKYFGTRLCVS
                     GVTKAACTDISFRPIISAIVKGKTTALDLWEPLHDGVLEQGFLERYRTAYGKMTEGDG
                     SLFDALNQTGSDDYLVKLHMDRVKKGETGTELKMTDK"
     gene            5491..7086
                     /locus_tag="VNN98_06790"
     CDS             5491..7086
                     /locus_tag="VNN98_06790"
                     /inference="COORDINATES: protein motif:HMM:NF024816.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HWM61839.1"
                     /translation="MNASRLQDLFDQAIALHQQGELAGAERLYQQVLLMEPASFAPRH
                     MLGVIRFQQGRNAEAIDLIAAALKLNPQVAAAWVNLGNVQAAAGRPEEAAASYRKALS
                     LSPGDAAILNALAGIAWSLGRRDEALDSMIQLVAAQPGDIGALHRRGNMLREMKRFDQ
                     ALADYDAVLAARPDLAETWSNRGAVLSQMGRAQDALESLDRALALSPGLMAALTNRGF
                     TLRELARFDEALESLDRALALQPDYAPALANRGKVLSEMERLEESFQAFRRAAELAYG
                     GDKPEATKLPHQTRHDREQREWLAAQGDAGKARILGGERLAGYAVNPQNQADAARAWA
                     THDPKIVVIDDLLTSEALESLRRYCLGSDIWHTVYTQGYLGAFPESGFAAPLLAQVAE
                     ELSATFREIFASCPLRYHWAFKYDGRLDGIGIHADEAAVNVNFWITPDGANRDPQGGG
                     LVIWDKAAPLEWNFAKFNADESAAYDFLAKEGAKAVRVPYRANRAVIFDSNLFHKTDK
                     IDFAEGYENRRINITMLYGRRRR"
     gene            7637..>9098
                     /locus_tag="VNN98_06795"
     CDS             7637..>9098
                     /locus_tag="VNN98_06795"
                     /inference="COORDINATES: protein motif:HMM:NF019335.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor plug domain-containing
                     protein"
                     /protein_id="HWM61840.1"
                     /translation="MSYRLKSKASLLLGTSFIVLAGLAAPSLAQQVAQADTESVIVTG
                     TRVTGMTAADSAAPITVIGSDALSHVGQPNLIQALAQITPSFSAESLGGDTGALTLSA
                     RLRGLSPNDTLVLINGKRRHSTGNLHVLGGQYQGAATADLDMIPVASIDHIEVLQEGA
                     AAQYGTDAIAGVVNIILKHNSSGGTASATGGQYFEQGGDTYDFNGNFGVDLGGKGFLS
                     VTGEKRYRGFSQRGGQDIREVGADGKPRALAYDPTTDPDFPRVNHIVGDPESMLTTVA
                     ANFEYDLEPNLTLYSTATYGEREAKAYENYRVPNRVIASPGSSTPCSATNANGFKTAQ
                     TPTGAPACAIGIGGGTAVIAGSGAGTPGINSKGIIISSGSAGTFTTPGELIFNPQGFN
                     PQEGLKEDDYGYTVGLKGEIAGYHWDLSGTYGKDRNAIYTYNTANASLYLDTHTTPTN
                     IYDGRFTASEATFNLDITKEYNVGLASPLTVAVGGEG"
BASE COUNT         1660 a         2934 c         2882 g         1622 t
ORIGIN      
        1 cactgccggc gggcgatgcg gcgcggcgcg gcgcagtggc cgcggccatt cgcggcttgc
       61 cggcggacgg ctcggcggcg gggttgcgct gcgacggcgg caagagcctg gatccttcca
      121 ccctgcttta ttcctgcaac gccggcgtgg gtgatgcgcc gcatgtggtg ctggcggcgg
      181 tcacgccgcg cggattgttc ctggccgacg gccttccggg aatgatcaac gtcttgtcag
      241 cggcgattgc cgcgcaatcg ggcgccccgg tatcgggcgc gtccgctgcc gcggcggcgg
      301 tcaggagcag tttcgcgccg ccggtgttga acgccaacgt caacgcttat tccggttact
      361 tgcaactgcg cagcgcgggc agccgcgcca gcgcccgggg caattatccg gcggccgaac
      421 aggcttaccg cgatgcgctg gatatcgaga ccaggctgtt cggaccggac tccgccgcgg
      481 tgggcgcgac tttgatcgaa ctggcgctgc agatcagcaa ccagcagcgt ttcgacgaag
      541 ccgccgccct gttccgccgc gccactccca tcatcgaagc ctcgcccagt cccgaaatcc
      601 gcgcccggct ggcctcctat cgcgggctgg atgccgccaa ccagcgccac tacgaagaag
      661 cactgcgcta tgcccgccag gacaccgccg cacgccaggc cgcggtggac gcggtgcgca
      721 atggtgggct ggacatgaac ggcaatgtgc ctgttgtccc caccttgctg gacggcgagt
      781 tggcgcacgc cttgcgggtg caggcgacct tggaactgcg caacggcaat atcgccggtg
      841 ctcaagcctc tgccgggaag gcgctgtaca ttattaccgc ccatcccgac ctgccgctgg
      901 cctggcgggc cgacatggtc tccctgatgg gcgagatcaa tgcgcgccag ggccgcgtgg
      961 tgatcgccga gcgcgatttc atcgacgcgc tggggatgga ccgcaagctg ttcggcgatg
     1021 gtggccctac catcctggcc ttgctgcagc tgggccgctt ctacagcgat gagcaagtct
     1081 atccctccgc catcgtttcc tatcgcgaag cctttaccct gctggccaag gatccgctga
     1141 cccgctcgca gatcgtggcc gaccagatcg tgcctttcct cactgccgcc agcgcttcat
     1201 tgggggctgc ggaccgcgcc aggctggaat ccgagatgtt cgccgccagc cagatgacgg
     1261 atgccggcgt ggcgggacag accatcgcgc gcatggcggc gcggcgggcg gcggaaaccc
     1321 cggctctggc cgaggaagtg cgcgccgccg acgacgcggc gcgcggccgc gacgaccttc
     1381 gcatgcagtt ggccgtggag cacgccaagg ccaatggcga gcgtgacacg gggcgcgagg
     1441 cggcgctggc ggcacagctt tccaccgcga ccgcccgcgc cggcgacctg gacgccaagc
     1501 tgcacaagga tttccccgcc tatgccggta tggccgatcc cggcgcggtc actctggagg
     1561 cgatgaaacg tgtgctgcat ccgcgcgaag cctttgccgg tttcgtgatc ggcgtgcgcg
     1621 ccagttacgt tctgctggtg actcgggacg gactgacggt caaacaggtc cagaccaata
     1681 gcgacgatct ggcggccgac attgccgacc tgcgcggcgc ctttgtgccc aagctgggca
     1741 agttgccgga cttcagcctc gccaacgcgg cgtcccttta taatgagacc ctgggcccgg
     1801 tctcgcccca gctggcaggg atggatcatc tggtggtggc ggccagcggc gatctcgcca
     1861 gcctgccttt ctcgctgctg gtgaccgctg cgccggctgg cgcgcgcgat tatgttaacg
     1921 ccgcctggct gatccgccag acggcggttt ccgaaacacc gtcggcgcgg gccttcatgg
     1981 cgctgcgcgc agcgcccaag acggcgccgc ccaagccctt cctgggcatc ggcaatccca
     2041 acttccaggg cggcaatcag gctctggcgc tgaatgcgct ggctggcgcc tgttcggcgg
     2101 gcggtcccac cgatccggcg ttgctgcggg cgctgcagcc gctgcccgag acagcggcgg
     2161 aagtgcaggc ggtgggccgc gacctgggcg ccacgccgga cgatattctg ctgggtgacg
     2221 ccgccacgga aacggccgtg cgcgccaaat cgctggatca atatgcggta ctctatttcg
     2281 ccacccacgg catgctgccg ggcgaactac actgccaggc ccagcccggc ctggtgctgt
     2341 cgccgcccgc aagccccgct cagtccaccg ccgccgacgg tcttctgacc gccagcgaga
     2401 tcgcgggcct gaagatcaat gccaacctcg tcgtgctgtc ggcctgcaac accggcgccg
     2461 gcggcggcaa aagcttcggc ggcggtgcgc tgcaaggtct ggccgacgcc ttcttcaatg
     2521 ccggggcgca tgcggtgctg gccagccatt gggaagtgcc ttcggccgcc accatgtcgc
     2581 tgatgacggt caccttcgcc aatatggcaa aggaccccaa acacgacgcg gcggaagcct
     2641 tgcgccaggc gcaactggcg ctgatcgcac aggggcctac ggcgcatccc tttgaatggg
     2701 ccgccttcac cctgatcggc gatggggcct gatatgaagg aatgggcacg catatggagg
     2761 cgatgatgaa atcaaagctg atcctgactc tggccacggt tctgctctgc ggctgcatgg
     2821 cgcaatcggc cagcgccgcc gtactggtgg tggcggaagc ccgcggcatt gcgctcaagc
     2881 ccggcgccac gctggattcg accaagccgc tgaccttgaa acagggccag catgtcaccc
     2941 tgatctcgga gaccggctcg accctgaaac tggacgggcc ctatgaccgg ccgcctacgg
     3001 cgggcggtgg cgggggcggt gtgggattga accagaccct ggccgccctg gtgacccaac
     3061 gcacgtcgcg cgccggcgag ttcggcgtca cccgcggtac ggtgctggcg gatctgcctg
     3121 atccttgggt gctggacgcc acccatagcg gcaatgtctg tttgctggaa aagggcacgc
     3181 ccaccttctg gcggcccgac agcaaggccg tcgcttcgct ggccgtggcg ccggcggatc
     3241 acagctggaa cgccaaggcg caatggccgg tgggccagga ccgcatcgcc atcaccaccg
     3301 acgtgccgat gaaggcgggc gagacctatg tcgtcacctt caacggcacg gaatcggcgg
     3361 tcaccatcgt ccagctgcca gccagcctga ccaacaccga gatgcgcgcc ggctggatgg
     3421 ccaatcgccg ctgcgagcag caggcccagg cgctgctgaa gaccaccagt ccgtgaaggc
     3481 actattcacc ggcacgggcg cccagcgtcg caacgccctg cgctcggccg ccatctttgt
     3541 ggcggtgtcg ctggtcagcg cggcggtgtc gctgttcctg gtggacaatt tctcggtgct
     3601 gagcagagtt gaccagttcg tgcaggactg ggaaatcgcg gggacttttg cgcggcccga
     3661 agcccaggat tccgacatcg tcatcgtggc ggtggatgag gcgacgctgg cgcagtttcc
     3721 ctaccggtca ccgatagacc ggcagttcct ttccactctg atccagaaga tcgcgtccca
     3781 ccagccagct cttatcgaat cggactttct gctcgaccag ccgaccgagc agaccaagga
     3841 tatcgcgctg gccaagaccc tgcgcgacac caaggtgccg ctggtgatca gttatgtcgc
     3901 cgacaagaac gcggtgacgc cggaacagaa ggcgtttgag gacatcatgg tgccgttgaa
     3961 gctgagggcc atggccgacc agccgacgga tcagttcggc accgcccgcg ccgtctatcc
     4021 cggcaaggtg gtggacggcc attatattgc gggtgtggcg cgcgctgtcg ccgcgaagct
     4081 gggggtcaaa accccggccc aggaagtgcc tatcatctgg cacggccggc cggcacccag
     4141 cgaactcgat cgcgacccga agtttttcaa gcagtattcc gccgcgaccg ctgccttcat
     4201 gcctgaggct tggtatcgcg gcaagatcgt actgatcggc tcggatgtca ccctggtgga
     4261 ccgccaccgc acgccctttt cggtgtttct tccgggcgaa gccggcgagc ttcccggaat
     4321 cgtgatccaa gcccacgctt tgtcgcagct cattcatcac aagatttcgc cggtgccggg
     4381 ctggcaggtc gatttcgcca tcaccttggc actggcgttc ttgggtgcgg ctttgggtgt
     4441 gatcagcgcc tcgctgatct ggcgcgccgt cgcgctgatc ctgttcctgc ctttgttctg
     4501 ggccggcggc gtggcgcttt atcactatgc caacctgatg gtggggctga tgtcgccggc
     4561 gctggccatg gtgatcagct tcgccagtat ggaatcgttg agcggccgcg aggcgcgcaa
     4621 acagaaggcc ttcatccagg gcgccttctc gcgctatgtc tcgccggcca tcgtcgaccg
     4681 catggtggcc gacccgtcgc gcatgtcgct ggaaggcgaa cgccgggaaa tgacctttct
     4741 gttctcggac attgccgact tcaccgccat gtccgaacag atcgaggcgg tgcaactggc
     4801 ccatgtgctg aacaactatc tcgacggcat gaccaatctg gtgatgaagc atggcggcat
     4861 ggtggacaag ttcatcggcg atgccgtctt cgccatcttc aacgcgccac tggacctggc
     4921 cgagcaccag gaaaaagcgg tgcgctgcat gctggacatg gacaatttca gccaggagta
     4981 ccgcaagaaa cagcatgcgg agggcgtgcc cctagggatc acccgcatcg gcgtgcatac
     5041 cggggtggcg gtggtgggca atttcggcag ccatgcccgc ttcacctata ccgcctcggg
     5101 cgacgcggtg aacacggcag cgcggctgga aggcatcaac aaatatttcg gcacgcggct
     5161 gtgcgtcagc ggtgtgacca aagccgcttg cacggatatt tctttccgtc ccatcatctc
     5221 ggccatcgtc aagggcaaga ccacggcgtt ggacctgtgg gaaccgctgc atgacggcgt
     5281 gctggagcag gggttcctgg aacgttaccg cacggcctat ggcaagatga cggaaggcga
     5341 tggttccttg ttcgacgccc tgaaccagac cggctctgac gattacctgg tcaagctgca
     5401 tatggaccgg gtcaagaagg gcgaaaccgg caccgagttg aagatgacag acaaataggc
     5461 cgcgccctgg tttttgtgta tgcatccccc atgaatgcct cgcgcctgca ggacctgttt
     5521 gaccaggcca tcgcgctgca tcagcagggc gaattggccg gcgccgagcg gctgtaccag
     5581 caggtgctgc tgatggagcc cgccagcttc gccccccgcc atatgctggg cgtgatccgc
     5641 ttccagcagg gccgcaacgc cgaggcgatt gacctgattg cggctgccct gaagctgaac
     5701 ccgcaagtgg cggcggcctg ggtcaatctg ggcaatgtgc aagccgcggc gggccgcccc
     5761 gaggaagcag cggcgagtta tcgcaaagcg ctgtcgctgt cgcccggcga tgccgccatc
     5821 ctcaacgcct tggccggtat cgcttggagc ctggggcgtc gggacgaggc actggacagc
     5881 atgatccagc tggtggcggc gcagcccggc gacatcgggg cgctgcatcg tcgcggcaac
     5941 atgctgcgcg agatgaagcg ttttgatcag gcactggcgg attacgacgc ggtgctggcg
     6001 gcgcggcccg acctggcgga gacctggagc aatcgcgggg cagtgctgtc gcaaatgggg
     6061 cgggcgcaag acgcgctgga aagcctggat cgcgctttgg cgctcagtcc cggcctgatg
     6121 gcggcgctga ccaatcgcgg tttcaccttg cgcgagttgg cgcgtttcga cgaggccctg
     6181 gaaagcctgg atcgcgcgct ggcgctgcag cccgattatg ccccggcgct ggccaatcgc
     6241 ggcaaggtgc tcagcgagat ggaacggctg gaggaaagtt ttcaggcctt ccgccgggcc
     6301 gccgagcttg cctatggcgg cgacaagccc gaagcaacca agctgccgca tcaaacccgg
     6361 catgaccgcg agcagcgcga atggcttgcc gcccagggcg acgcgggcaa ggcgcgcatt
     6421 ctgggcggcg aaaggctggc gggatacgcg gtcaacccgc agaaccaggc cgatgcggcc
     6481 cgggcctggg ctacccacga tcccaagatc gtggtgatcg atgacctgct gacttcggaa
     6541 gcgctggaaa gtctccggcg ctattgcctg ggttcggaca tctggcacac cgtctatacc
     6601 cagggctatc tcggcgcctt tcccgaatcc ggtttcgccg cacctctatt ggcgcaagtg
     6661 gccgaagaac tcagcgccac cttccgggaa atatttgcaa gctgcccgct gcgctatcac
     6721 tgggccttca aatatgacgg caggctggac ggcatcggca tccatgctga tgaagcggcg
     6781 gtcaatgtca atttctggat cacgccggac ggggccaacc gcgatccgca aggcggcgga
     6841 ttggtgatct gggacaaggc ggcgccgctg gaatggaatt ttgccaagtt caatgccgat
     6901 gaaagtgccg cctatgattt cctggccaag gagggcgcca aagcggtgcg cgtgccctat
     6961 cgcgccaacc gggcggtgat cttcgactcc aacctgtttc acaagaccga caagatcgat
     7021 ttcgccgaag gttatgagaa ccggcgcatc aatatcacca tgctgtatgg gcgccggcgg
     7081 cgctgaatcg cctcttctgt ctcaaaatgt ttgaaaccgc ttcggtgggc gccgtgcggc
     7141 atgccgggca ggtaatctgt gtacagactg ttaggcgctt tttgcttttt tgccctatgc
     7201 aatccgccca aaaggcaggc aacaggaagt ctcaaaatgt gtgctgcgat gcagcatggt
     7261 caaatatcag gacattcgct gcctcagggc agtaattctg ctcacgcaaa atgcaatcgt
     7321 gaagcgatcc cagtgatgat ggcatataat ttcttcttgt cataaatagt ggaatataat
     7381 ttctcattag ttcactatta tatactaata tatctcaact ggtcaatttc gatgcattat
     7441 tgtcacttcg tcttttcgtc ataaacatcc aaaaagaatc ccatttacgc gctggcgaag
     7501 atggccatac ggtcatctca gtgtcttgca ctgcacaaaa agtgtaactg cccaaaaaag
     7561 agataagaaa tcagaggaaa caagcgggaa ggaaccaaac caacttcgcc aaggcgaaat
     7621 acccgggggt tccttaatgt cgtatcgttt gaaatccaaa gcgtccctgt tgctggggac
     7681 ctcctttatc gtcctggcgg gccttgccgc gccatcgctg gcccaacagg ttgcccaggc
     7741 ggacaccgag tcggtgatcg tcaccggcac ccgcgtcacc ggcatgaccg ccgccgacag
     7801 cgccgccccc atcaccgtta tcggctctga cgccctgtcg catgtcggtc aacccaacct
     7861 tattcaagcg cttgcccaga tcacgccgtc cttctcggcg gaatcgctgg gcggcgacac
     7921 cggcgctctc acgctgtcgg cgcgcctgcg cggcctcagc cccaatgaca cgctggtgtt
     7981 gatcaacggc aagcgccgtc actccaccgg caacctgcac gtgctgggcg gccagtatca
     8041 gggcgcggcc acggccgacc tggatatgat cccggtggcc tccatcgatc atatcgaagt
     8101 gctgcaggaa ggcgccgcgg cgcaatacgg caccgacgcc atcgccgggg tggtcaacat
     8161 catcctgaaa cacaacagca gcggcggtac ggccagcgcc accggcggcc agtattttga
     8221 acagggcggc gacacctacg atttcaacgg caatttcggc gtcgatctgg gcggcaaggg
     8281 cttcctcagc gtcacgggcg agaagcgtta tcggggcttc agccagcgcg gtggccagga
     8341 catccgcgaa gtgggcgccg acggcaagcc cagggcgctg gcctatgatc ccacgaccga
     8401 tccggacttt ccgcgcgtca accatatcgt gggcgacccg gaatccatgc tgaccacggt
     8461 ggcggccaat ttcgaatatg acctggaacc caacctcacg ctctattcca cggccaccta
     8521 cggcgagcgc gaggccaagg cctatgaaaa ttatcgcgtt cccaaccgcg tgattgcttc
     8581 gccgggctcc agcacgccct gcagcgcgac aaacgcgaac ggcttcaaaa ctgcacagac
     8641 cccgaccggc gcgccggcct gcgccatcgg tattggcggc ggcaccgccg tgatcgcggg
     8701 atcgggggcg ggaacgcccg gcattaacag caagggcatc attatatcct caggttcggc
     8761 cggcaccttc accacgcccg gcgaactgat cttcaacccc cagggcttca atccgcagga
     8821 aggcctgaag gaggacgatt acggctatac cgtcggtttg aagggcgaga tcgcaggcta
     8881 tcactgggac ctctcgggca cctacggcaa ggaccgcaac gcgatctaca cctataatac
     8941 cgccaacgcc tcgctctatc tcgacaccca caccacgccg accaacatct atgacggccg
     9001 cttcaccgcc tccgaagcga ccttcaacct cgatataacc aaggaatata atgtcggcct
     9061 ggcttcgccc ctgaccgtcg cggtgggcgg cgaagggc
//
LOCUS       DATMDK010000349         3326 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1762826,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000349 DATMDK010000000
VERSION     DATMDK010000349.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3326)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3326)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3326
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1762826"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..349
                     /locus_tag="VNN98_06800"
     CDS             <1..349
                     /locus_tag="VNN98_06800"
                     /inference="COORDINATES: protein motif:HMM:NF015060.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="TspO/MBR family protein"
                     /protein_id="HWM61841.1"
                     /translation="IVPPTYLFAPVWTALYILMAVAAWRVWRKTGLKSLEMAAFGLQL
                     ALNFAWSAIFFALHRIGAALVEIAALDLAILATTLLFFRRDRLAGLLLLPYLAWTGFV
                     TLLTHAFWRLNGG"
     gene            532..2460
                     /gene="dnaK"
                     /locus_tag="VNN98_06805"
     CDS             532..2460
                     /gene="dnaK"
                     /locus_tag="VNN98_06805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001737966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaK"
                     /protein_id="HWM61842.1"
                     /translation="MAKVIGIDLGTTNSCVAVMEGSAPKVIENAEGARTTPSIVAFTP
                     DGERLIGQPAKRQGVTNPEHTYFAIKRLIGRRFDDPMTQKDMGMVPYKIVKADNGDAW
                     VQGRDGKFSPSEISGFILQKMKETAEAHLGEKVTQAVITVPAYFNDAQRQATKDAGKI
                     AGLEVLRIINEPTAAALAYGLDKKQSGVIAVYDLGGGTFDVSVLEIGDGVFEVKSTNG
                     DTFLGGEDFDQRVVNFLADEFKKENGIDLRSDRLALQRLKDAAEKAKIELSSAQQTEV
                     NLPFITADASGPKHLTIKITRATLEKLVDDLIQKTIGPVKQALKDAGVTYSQIDEVIL
                     VGGMTRMPKVQEAVKTLFGGKEPHKGVNPDEVVAIGAAIQGGVLKGEVKDVLLLDVTP
                     LSLGIETLGGVFTRLIDRNTTIPTKKSNIFSTAEDNQGAVTINVFQGEREMAADNKSL
                     GRFDLQGIPPAPRGVPQIEVTFDIDANGIVSVTAKDKATSKEQQIRIQASGGLSDADI
                     QKMVKDAEAHAAEDKKRRDLVEAKNQADALIHSTEKAMGEHGDKVGPEEKTAIEAALA
                     ALKTAVSGEDADAIKEKTNTLAQASMKLGEAMYKAQQSEAASADAAADGAGNAPKPDD
                     NVVDADFEEVDDNKKGAA"
     gene            2532..>3326
                     /gene="dnaJ"
                     /locus_tag="VNN98_06810"
     CDS             2532..>3326
                     /gene="dnaJ"
                     /locus_tag="VNN98_06810"
                     /inference="COORDINATES: protein motif:HMM:NF008035.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaJ"
                     /protein_id="HWM61843.1"
                     /translation="MKRCYYETLECQRSASGEILKSAYRKLAMRFHPDKNPGDHTAEV
                     KFKEINEAYDVLKDDQRRAAYDRFGHAAFEGGIGAAGARAGGPFGDFAGSFGDVFEDL
                     FGQMMGGASRAKRQNRGQDLRYNLEISLEQAFTGRAAEIKVPTHVTCDACNGQGAEPG
                     SQPETCPTCAGHGKVRATQGFFTIERTCSPCRGSGKIIRNPCKTCRGAGLVQKERTLN
                     VDVPPGVEEGTRIRLSGEGAAGANGGPPGDLYIFLSVTEHAIFQRDG"
BASE COUNT          707 a         1069 c         1022 g          528 t
ORIGIN      
        1 catcgtgccg cccacctacc tgttcgcccc ggtctggacc gcgctctaca tcctgatggc
       61 cgtagcggcg tggcgagtgt ggagaaagac cgggctcaaa tccctggaga tggccgcctt
      121 cggcctccag ctggcactga atttcgcctg gagcgcgatt ttctttgccc tgcaccgcat
      181 cggcgccgcg ctggtggaga tcgcggcctt ggatctggcg atcctggcca ccacccttct
      241 gttcttccgc cgcgaccggc tggccgggct gttgctgctg ccctatctgg cctggaccgg
      301 cttcgtcacc ctcctgaccc acgccttttg gcggctgaat ggcggctgag gcgaaatcag
      361 aatccctatc aaaggcttgg caagatcacc cctcctccct atataccccc ttggataagc
      421 atgggtttga cccagggctt gtttcgtcga attttgtcaa ataattcaat gggatggacc
      481 ggaggatgcc gcaagggtca ggactccatg cccaatgaga ggaactagag aatggctaaa
      541 gtaattggca tcgatcttgg caccaccaac agctgcgtgg cggtcatgga gggctcggcc
      601 cccaaggtca tcgagaatgc ggaaggcgcc cggaccaccc cgtccatcgt cgcctttacc
      661 cccgacggcg aacgcctgat cggccagccc gccaagcgcc agggcgttac caatcccgaa
      721 cacacctatt tcgccatcaa gcgcctgatc gggcgccgct tcgacgatcc catgacccag
      781 aaggacatgg gcatggtgcc ctataagatc gtcaaggccg acaatggcga tgcctgggtg
      841 caggggcgcg acggcaagtt ttcccccagc gaaatctccg gcttcattct gcagaagatg
      901 aaggaaaccg ccgaagccca tctgggcgag aaggtcaccc aggcggtgat cacggttccg
      961 gcctatttca acgacgccca gcgtcaggcg accaaggacg ccggcaagat cgccggcctg
     1021 gaagttcttc gcatcatcaa cgagcccacc gccgcggcgt tggcttacgg gttggacaag
     1081 aaacagtccg gcgtcatcgc ggtctatgac cttggcggcg gcactttcga cgtctcggtg
     1141 ctggaaatcg gcgatggcgt gtttgaggtg aagtccacca atggcgacac tttcctgggc
     1201 ggcgaagatt tcgaccagcg cgtggtcaac ttcctggctg atgaattcaa aaaggaaaac
     1261 ggcatcgacc tgcgcagcga ccgcctggcg ctgcagcgcc tgaaggatgc cgccgaaaag
     1321 gccaagatcg aactttccag cgcgcagcag accgaagtga acctgccctt catcaccgcg
     1381 gacgcttcgg gccccaagca tctcaccatc aagatcaccc gcgccaccct ggaaaaactg
     1441 gtcgacgacc tgatccaaaa gaccatcggc ccggtgaagc aggcgctgaa agacgccggc
     1501 gtcacctaca gccagatcga cgaagtcatc ctggtcggcg gcatgacccg catgcccaag
     1561 gtgcaggaag cggtgaagac cctgttcggc ggcaaggagc cgcacaaggg cgtcaatccc
     1621 gacgaagtgg tcgccatcgg cgcggccatc cagggcggcg tcttgaaggg cgaagtcaaa
     1681 gacgtgctgc tgctggacgt gaccccgctg agcctgggca tcgaaaccct gggcggcgtc
     1741 ttcactcggc tgatcgaccg caacaccacc atcccgacca agaagtcgaa catcttctcg
     1801 accgccgaag acaatcaggg cgccgtcacc atcaatgtgt tccagggcga gcgcgaaatg
     1861 gcggcggaca ataagagcct cggccgcttc gacctgcagg gcatcccccc ggcgccgcgc
     1921 ggcgtgccgc agatcgaagt caccttcgac atcgacgcca acggcattgt cagcgtcacc
     1981 gccaaggaca aggccaccag caaggagcag cagatccgca tccaggcttc gggcggcttg
     2041 tcggacgccg acatccagaa gatggtcaag gatgccgaag cccatgccgc ggaagacaag
     2101 aagcgccgcg acctggttga agccaagaac caggcggacg ctctgatcca ctccaccgaa
     2161 aaggccatgg gcgaacatgg cgacaaggtg gggcctgagg aaaagaccgc catcgaagcc
     2221 gcgctggccg cgctcaaaac cgcggtgagc ggcgaagacg ccgacgccat caaggaaaag
     2281 accaacaccc tggcccaagc gtcgatgaag ctgggagagg ccatgtacaa ggcgcagcag
     2341 tcggaagccg cgtccgccga tgccgccgcc gacggcgcgg gcaatgcgcc caagccggac
     2401 gacaatgtgg ttgacgccga cttcgaggaa gtcgacgaca acaagaaggg cgcggcctaa
     2461 gtgtatcggg gccctcgcgt gaaagcgggg gcctttgttt cagcatgcgg ggatgagttg
     2521 agtatagggg catgaagcgc tgttattacg aaaccctgga atgccagcgg agcgcctcgg
     2581 gcgagatcct gaaatcggcc tatcgcaagt tggcgatgcg gtttcatccc gacaagaatc
     2641 ccggcgacca caccgccgaa gtcaagttca aggaaatcaa cgaagcctat gacgtcctga
     2701 aggacgatca gcgccgcgcc gcctatgacc ggttcggtca cgccgccttc gaaggcggca
     2761 tcggagcggc gggcgcgcgc gccggcggcc cgttcggcga tttcgccggc agcttcggcg
     2821 atgtgttcga agatctgttc ggccagatga tgggcggcgc atcgcgcgcc aagcgccaga
     2881 atcgcggcca ggacctgcgc tacaatctgg aaatcagcct ggagcaagcc ttcaccggcc
     2941 gcgccgccga gatcaaggtg ccgacccatg tgacctgcga cgcctgtaac ggccaaggcg
     3001 cagaaccggg ctcccagccg gagacctgtc cgacctgtgc cggccacggc aaagtgcgcg
     3061 cgacccaggg cttcttcacc atcgaacgca cctgctcgcc ctgccgcggc agcggcaaga
     3121 tcatccgcaa tccctgcaag acctgccgcg gcgcaggcct ggtgcagaag gagcgcacgc
     3181 ttaatgtgga tgtgccgccg ggtgtggaag aaggcacccg catccgcctg tcgggcgaag
     3241 gcgccgccgg cgccaatggc ggaccgccgg gcgatctcta tattttcctc tcggtcaccg
     3301 aacatgcgat cttccagcgc gacggc
//
LOCUS       DATMDK010000350         5712 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1762981,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000350 DATMDK010000000
VERSION     DATMDK010000350.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 5712)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5712)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5712
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1762981"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(26..604)
                     /locus_tag="VNN98_06815"
     CDS             complement(26..604)
                     /locus_tag="VNN98_06815"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61844.1"
                     /translation="MTLISGRDCGDCTVCCVYPTINKPEIQKLSGAACRHCTGHGCAI
                     YDTRPPVCRGFYCAWRTVDIFGDDWRPDKSGVLAYVETEGISEDFDLSTGIGLMLVGH
                     PLKIVRQKWFQDFVVTGVTNSVPLFLSLPGPRGYQAATVSLNTEEMLDAITRGLVKDA
                     LEAVLKILRGWDFQPATITHTGNDVSSAEEEA"
     gene            690..2774
                     /locus_tag="VNN98_06820"
     CDS             690..2774
                     /locus_tag="VNN98_06820"
                     /inference="COORDINATES: protein motif:HMM:TIGR02074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008658 - penicillin binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PBP1A family penicillin-binding protein"
                     /protein_id="HWM61845.1"
                     /translation="MAERPNLPTSDDLRQLAKAAEPYAPAFAITMAMIAVPLALLYLT
                     PLVLGLFAPKLDPNIDLYAVNRPLAFTFLDAGGNEAGHRGAIVGERLKLEEMPDYLPA
                     AFIAMEDRRFYHHNGIDPLGLGRALLLDLRARHYVSGGSTISQQTAKIVYTNQQRTMS
                     RKLIELIDAAGLEKSLSKQQILQLYLNRIYLGSGAYGVDGAARVYFGSGARHLTLAQA
                     AMLATLTRAPSVFSPRRDLLRAQQRASLVLDSMVENGAITQAQADEARAHPAVITDRA
                     SSEARNYFLDAAADEATRMATVNSVAPTADMIVHTTLEPKVQEAARLAALRNINKLGK
                     KTRTSEAAVVMMKPDGAVSALIGGVDYQDSVFNRATQAHRQPGSAFKPFVYLAALESG
                     LSPWETRDDEAVDINGYKPANFGGKSYGTLTLADALAHSVNTITVNLAQEVGVRNVVA
                     AARRLGITSQLDANASLALGTSEVTPLELTAAYAAFANGGYRVSPYMVTQVDIGTRTV
                     YQRHAPQPARVIAQSVNRDLTAMLYGVILNGTGGYASLHGREAAGKTGTTQDSHDAWF
                     VGFTTDYVAAAWVGNDDSSPTRGVTGGTLPAYIWRDAMLAAEQGLPLKPLDKSVQPPP
                     EDETLMASGATWDGRDDESLNHLPNLPAEEPQQPQRPERHRGGLLGWLFGSNDNDQDT
                     QQPPPRRDDSGR"
     gene            2796..3779
                     /locus_tag="VNN98_06825"
     CDS             2796..3779
                     /locus_tag="VNN98_06825"
                     /inference="COORDINATES: protein motif:HMM:NF020650.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HWM61846.1"
                     /translation="MIRRAFLATAMFAALTLPAQAATTIRFVTDWKAQAEHGGFYQAL
                     AEGLYAKRGLEVKIIQGGPEVNVPQLLAGGAADFGMGSNSFISLNMVKTGVPIRAVMA
                     IFQKDPQVLISHPRRDINSLADMRGKPVLISAASMSAFWPWLRVKFGFSDKQIRKYTY
                     NLAPFILDPNAIQEGYLTSEPFTVQQQAHFTPKIFLLSDYGYPGYANMVLVPQRWIDG
                     NRKAVQGFVDATRDGWLHYLDNPAKGNALIKQQNPDMTDAILKQALDKMKDHEMLLSG
                     DGRTFGLGSMTQAQWKIFYDTMAAEGLYPKGLDYTKAYDLSFGRATLQKFQ"
     gene            3829..4122
                     /locus_tag="VNN98_06830"
     CDS             3829..4122
                     /locus_tag="VNN98_06830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012222082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004518 - nuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GIY-YIG nuclease family protein"
                     /protein_id="HWM61847.1"
                     /translation="MPGVYYVYILASKRNGTLYIGVTNDLIRRVWEHREGLVEGFTTT
                     YGVKHLVHYEIFEDINAAIHRETRLKKWKRQWKIDLIQTRNLLWDDLYDTLNG"
     gene            4175..4897
                     /locus_tag="VNN98_06835"
     CDS             4175..4897
                     /locus_tag="VNN98_06835"
                     /EC_number="7.6.2.7"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HWM61848.1"
                     /translation="MLSAHHVSKRFANGTQALRDLSFDVAAGEFVSLLGPSGCGKSTA
                     LRLAAGLLVPDAGSIAYPGSKPEIGFVFQDPTLMPWADALTNARLPLDLKKVARREAN
                     DRAARALARVGLAGFEHVYPRELSGGMKMRVSIARALAAQPKLLLLDEPFAALDEITR
                     NELGDDLLRLWRADGLTVLFVTHSAAESSFLASRVLVMTPRPGRIAADITLASGRDSR
                     LAPPTIEAQRAISAALNTAMVA"
     gene            4894..5679
                     /locus_tag="VNN98_06840"
     CDS             4894..5679
                     /locus_tag="VNN98_06840"
                     /inference="COORDINATES: protein motif:HMM:NF012738.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HWM61849.1"
                     /translation="MKRAADFAFPVLLAALLLGAWEWAVAHWQVPPYVLPAPSAIARA
                     FADNFTSLMASLVSTLTVTLEAFAAACLLGVATAIGFSQSRLLERTLYPYAVILQVTP
                     VVAIAPLILIWVGFERINLALVIIATLVAFFPILAGATLGLKSADFNLIDLTRLYGAS
                     RAQILWRIRLPGALPYLLSGMKTAGGLALIGAVVAEFVAGSGTATGLAWRIVESGNRL
                     EIATLFAALALLAATGVLIFAALSLLEWWLLHRWHESAISNQP"
BASE COUNT         1035 a         1926 c         1724 g         1027 t
ORIGIN      
        1 tggcggaatg ccacgctcga gttcgttaag cttcttcttc cgcgctactt acgtcattgc
       61 ccgtatgggt gatcgtggcc ggctggaaat cccagccgcg caatatcttc agcaccgctt
      121 ccagcgcgtc tttcaccagc ccccgggtga tcgcatccag catctcttcg gtgttcaacg
      181 acaccgtcgc ggcctgataa ccgcgcggcc ccggcagcga gaggaacagc ggcaccgagt
      241 tcgtcacccc cgtcaccaca aaatcctgga accacttctg ccgcacgatt ttcagcggat
      301 ggcccaccag catcagcccg ataccggtgg acagatcgaa gtcttccgag atgccttcgg
      361 tctcgacata ggcaaggacg ccggacttgt cgggccgcca gtcgtccccg aaaatatcca
      421 ccgtccgcca ggcgcagtag aaaccgcggc acaccggcgg gcgggtgtca tagatggcgc
      481 agccgtggcc ggtgcagtgg cggcatgcgg cgccggacag tttctggatc tccggcttgt
      541 tgatggtggg atacacgcag cagacggtgc agtcgccgca gtcccgcccg gaaatcaagg
      601 tcatgccgtc ccacatcgcg ccagcttggc acgcccatta cggcgccgca ccttgaatcc
      661 gccgcaaata tgggtcagct atccgggcca tggccgagcg ccctaacctc cccaccagtg
      721 acgacttgcg ccagcttgca aaggcggccg agccttatgc ccccgccttt gccatcacca
      781 tggcgatgat cgcggtgccg ctggcgctgc tctatctcac gcccctggtg ctgggcctgt
      841 tcgcgcccaa gctggatccc aacatcgatc tctatgccgt caaccggccg ctggccttca
      901 ccttcctgga tgccggcggc aacgaggccg gccatcgcgg cgccattgtg ggcgaacggc
      961 tgaagctgga ggagatgccc gattatcttc ccgccgcttt catcgccatg gaagaccggc
     1021 gcttttatca tcacaacggc atcgatccct tgggcctggg ccgcgccttg ctgctggacc
     1081 tgcgggcccg gcattacgtc tcgggcggct cgaccatcag ccagcagacc gccaagatcg
     1141 tctacaccaa ccagcagcgc accatgtcgc gcaagctgat cgaactgatc gacgcggcgg
     1201 ggctggaaaa atcgctgagc aagcagcaga tcctgcagct ctatctcaac cgcatctatc
     1261 tgggcagcgg cgcctatggc gtggacggcg cggcgcgggt ctatttcggc agcggcgcgc
     1321 ggcacctgac cctggcgcag gcggcgatgc tggcgacctt gacccgcgcg ccctccgtct
     1381 tctcgccgcg ccgcgatctg ctccgggccc agcagcgcgc cagcctggtg ctggattcga
     1441 tggtggagaa cggcgccatc acgcaagccc aggccgatga ggcccgcgcc caccccgcag
     1501 tgatcaccga ccgtgccagc agcgaagcgc gcaactattt cctggacgcc gccgccgacg
     1561 aggccacacg gatggcgaca gtaaacagcg tcgcgcccac ggcagacatg attgtccaca
     1621 ccaccctgga gccgaaagtg caggaagctg cgcggctggc ggcgctgcgt aatatcaaca
     1681 agctcggcaa gaaaacccgc accagcgaag ccgcggtggt gatgatgaag cccgacggcg
     1741 cggtcagcgc cctgatcggc ggcgtcgact atcaggattc ggtgttcaac cgcgccaccc
     1801 aggcgcatcg ccagccgggc tcggccttca agcccttcgt ctatctggcg gcgctggagt
     1861 ccggcctttc gccctgggag acgcgcgacg acgaagccgt ggacatcaac ggctacaagc
     1921 ccgccaattt cggcggcaag agctatggca ccctcacttt ggcggacgcc ctggcccaca
     1981 gcgtcaacac catcaccgtc aacctggcgc aggaagtggg ggtgcgcaat gtcgtggccg
     2041 ccgcccggcg cctcggcatc acctcacagc tggatgccaa tgccagcctg gcgctgggca
     2101 ccagcgaagt gacgccgctg gagctgaccg ccgcctatgc cgccttcgcc aatggcggct
     2161 atcgcgtgtc gccctatatg gttacgcagg tcgatatcgg aaccaggacc gtctatcagc
     2221 gccatgcgcc acagccggcg cgcgtcatcg cccaaagcgt caaccgcgac ctcaccgcca
     2281 tgctctatgg cgtgatactc aacggcaccg gcggctatgc ctcgctgcac ggacgcgagg
     2341 cggcgggcaa gaccggcacc acccaggatt cccacgacgc ctggttcgtc ggcttcacca
     2401 ccgactatgt cgccgccgcc tgggtcggca atgacgattc ctcgcccacc cgcggcgtca
     2461 ccggcggcac cctgcccgcc tatatctggc gcgacgccat gctggcggcc gaacagggcc
     2521 tgcccttaaa gccgctcgac aaatcggtgc agccgccgcc ggaagacgag accttgatgg
     2581 cctcgggcgc gacctgggac gggcgtgacg acgaaagcct gaaccacctg cccaacctgc
     2641 cggcagagga gccgcagcag ccacagcgtc ccgaacgcca tcgcggcggc ttgctgggct
     2701 ggctgttcgg cagcaacgac aatgatcagg atacgcaaca acccccgccg cgccgggacg
     2761 attccgggcg ctagaagctg tgctataacg cgcgtatgat ccgccgcgca ttccttgcca
     2821 ccgcaatgtt cgccgcactg acgcttccgg cgcaggctgc caccaccatc cgctttgtca
     2881 ccgactggaa ggcccaggcc gagcatggcg gcttttatca ggcgctggcg gaagggcttt
     2941 atgccaagcg cgggttggag gtgaagatca tccagggcgg gccggaggtg aacgtgccgc
     3001 aattgctggc gggcggggcg gcggatttcg gcatgggctc caacagcttc atttcgctca
     3061 acatggtcaa gaccggcgtg ccgatccggg cggtgatggc gatcttccag aaagacccgc
     3121 aggtgctgat cagccatccg cgccgcgata tcaattcctt ggccgacatg cgcggcaagc
     3181 cggtgctgat ttcggcggcc agcatgagcg ccttctggcc ctggctgcgc gtcaagttcg
     3241 gcttcagcga caagcagatt cgcaaataca cttacaatct ggcgcccttc atcctcgatc
     3301 ccaacgccat ccaggaaggc tatctcacca gcgagccttt cacggtgcag caacaggccc
     3361 atttcacgcc caagattttc ctgctctccg attacggcta tcccggctat gccaatatgg
     3421 tgctggtgcc gcagagatgg atcgacggca accgcaaagc ggtgcagggc tttgtcgatg
     3481 ccacccgcga cggctggctg cactatctgg acaatccggc caagggaaac gcgctgatca
     3541 agcagcagaa tccggacatg accgacgcca tcctcaaaca ggcgctggac aagatgaagg
     3601 atcacgaaat gctgctgagc ggcgacgggc gcaccttcgg ccttggcagc atgacccagg
     3661 cgcaatggaa aatcttctac gacaccatgg cggcagaggg cctctatccc aagggcctgg
     3721 attacaccaa ggcctatgac ctcagcttcg gccgcgccac cctgcagaag tttcagtaaa
     3781 ccacccaaaa ttgtcatggc ccgcaacagc gggccaccca ggtgacacat gcccggtgtc
     3841 tattacgtct acatcctcgc cagcaaacgc aatggcacgc tctacatcgg cgtgaccaac
     3901 gaccttatac gccgtgtctg ggaacatcgc gaaggactgg tcgaaggctt caccacaaca
     3961 tatggtgtca aacatctcgt ccattatgag atatttgaag acataaatgc cgccattcac
     4021 cgcgagacgc gcctgaagaa atggaagcgc cagtggaaaa tagatttgat ccagacccgc
     4081 aatcttctgt gggacgatct gtacgacaca ctcaacggct agccggtttc aactgggtgg
     4141 cccgctgttg cgggccatga caatgggggg tttgttgtta tccgcccatc atgtgtccaa
     4201 gcgtttcgct aacggaacgc aggcactacg cgatctgtcg tttgacgttg cggcgggcga
     4261 attcgtttcg ctgctgggcc ccagcggctg cggcaagtcc acggcgctgc ggttggcggc
     4321 gggtttgctg gtgcccgatg ccggcagcat cgcctatccc ggcagcaagc cggaaatcgg
     4381 gttcgtattt caggatccga ctctgatgcc ctgggccgac gccttgacca atgcccgact
     4441 gccgctggat ttgaaaaagg tcgcgcgccg cgaggcgaat gatcgcgccg cgcgcgccct
     4501 ggcccgcgtc ggactggccg gcttcgagca tgtctatccg cgcgaactgt ccggcggcat
     4561 gaagatgcgg gtctccatcg cccgcgcgct ggcggcacag cccaaactgc tgctgctgga
     4621 cgaacctttc gcagcactgg acgaaattac ccgcaacgaa ctgggcgacg acctgctgcg
     4681 cctgtggcgc gccgatggat tgaccgtgtt gttcgtcact cacagcgccg ccgaaagcag
     4741 ttttctcgcc agccgcgtgc tggtaatgac cccgcgaccc ggccgcatcg ccgccgacat
     4801 caccttggcg agcgggcgcg acagccgcct cgcgccgcca accatcgaag cccagcgcgc
     4861 catatcggcc gcgctcaata cggcgatggt tgcatgaagc gcgccgctga cttcgctttt
     4921 cccgtgttgc tggcggcgct attgttgggc gcatgggagt gggccgtggc gcattggcag
     4981 gtgccgccct atgtgttgcc cgcgccatct gccatcgccc gcgcctttgc cgataacttc
     5041 acgtcgctga tggcttcgct ggtgtccacc ctgaccgtga ctctggaagc ctttgccgct
     5101 gcgtgcctgc tgggtgtcgc caccgccatc ggtttttctc aaagccggct gctggaacgc
     5161 acgctttatc cctatgccgt gatcctgcag gtgacgccgg tggtcgccat cgcgccgctg
     5221 atcctgattt gggtggggtt cgagcgcatc aacctggcgt tggtgatcat tgccactctg
     5281 gtagccttct ttcccatcct ggcgggtgcc accttgggat tgaaaagcgc cgacttcaat
     5341 ctgatcgatc tcacccgtct ctatggcgcc tcgcgcgcgc agatattgtg gcgcatccgc
     5401 ctgccgggcg ctctgcctta tctgctgtcg ggcatgaaga cggccggcgg cctggccctg
     5461 atcggcgcgg tcgtcgcgga gttcgtggcg ggatcgggca ccgccaccgg cctggcctgg
     5521 cgcatcgtgg aatccggcaa ccggctggag atcgccactt tgttcgcggc gctggcgctg
     5581 ctggcggcga ccggtgtgct gatcttcgcc gccttgtcct tgctggagtg gtggctgctg
     5641 caccgctggc acgaaagcgc gatcagcaac caaccttgac cggcgccgtc tcgcgcatgc
     5701 cgatcatccc gg
//
LOCUS       DATMDK010000351         3143 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2223758,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000351 DATMDK010000000
VERSION     DATMDK010000351.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3143)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3143)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3143
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2223758"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..979
                     /locus_tag="VNN98_06845"
     CDS             <1..979
                     /locus_tag="VNN98_06845"
                     /inference="COORDINATES: protein motif:HMM:NF024895.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015288 - porin activity [Evidence IEA];
                     GO_function: GO:0042834 - peptidoglycan binding [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="OmpA family protein"
                     /protein_id="HWM61850.1"
                     /translation="MKKALLAAAALVALPVVAQAQTLQYPGFYAGLEGGVNWMLNTTI
                     LNQSVSPQTGFAVGGVVGYDFVGPRVEAEVVYRNNQNNVSFGGTAINNQINQLGVLAN
                     VLYDFNAGGQFVPYIGAGAGIAFVDGNNSFGSTQFAYQGIIGVGYNITDTFRVNLDGR
                     YYGTTNPQVSGNGFNNPNNTFTSSWNNNNFSIMLGLQVKFGAPPVVVAPPPPPVTQAP
                     SYMVFFDWDRSNLSAQALATIGQAANAYKTRGSARITATGHTDTSGPEAYNMALSLRR
                     ANTVKDALVRNGVPATAIAVIGRGEQGLLVQTADGVREPQNRRVEIVIQ"
     gene            1121..1558
                     /locus_tag="VNN98_06850"
     CDS             1121..1558
                     /locus_tag="VNN98_06850"
                     /inference="COORDINATES: protein motif:HMM:NF024212.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HWM61851.1"
                     /translation="MLVELYDVARLMRTRFDRWARTYGMTRAQGIILGRLSRQPGMTQ
                     NEMAGLCEVEPITVGRLVDRLEARGLLERRLDPSDRRIRRLHLLPASEPILKEIQRYK
                     EELFCEVTEGLDQATVDLVTAALLKMKTQLTMEPAAKIAAAGE"
     gene            1560..2678
                     /locus_tag="VNN98_06855"
     CDS             1560..2678
                     /locus_tag="VNN98_06855"
                     /inference="COORDINATES: protein motif:HMM:NF012739.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HlyD family secretion protein"
                     /protein_id="HWM61852.1"
                     /translation="MSAIDDSMSAYPARKQGWPASLWADKARMRRVLMIGGVGIFLAV
                     AAVFYLMGGRYVSADDSYVHANKLMVSTDVSGLVQAVNVHEGQQVKAGDILFTLDPKP
                     FQIALDNAQANLASTVQDVESTRASYHAAVAQVAAQQAMATMNAATYGRYKALQKENA
                     IAAMQVDTARAAQLNSEAMTASLQQTAATLLVKLNGNPSLPAEQTPEYLKAKAAVDEA
                     QRQLDHATVRAPFAGTVGEVDSLQPGTLVISALSAFTTTSAVGLIGKDVWISSDMKET
                     DLTHVRPGAPVDITVDTYPGCKWSGRVDTVSAGSDSSFSALPAENASGNWVKVVQRIP
                     VRVAIDKSECDRPLRAGMSAVISIDTGKRRITRFLDGL"
     gene            2684..>3143
                     /locus_tag="VNN98_06860"
     CDS             2684..>3143
                     /locus_tag="VNN98_06860"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HWM61853.1"
                     /translation="MSEQHAAHVYDSKVAEWAVLIGSMAGVLMQALDTTIANVALPYM
                     EGSLSASRDQITWVLTSYIIAAAIMTAPVGWLAARFGKKNLFVTSIAGFTIASMLCGA
                     AQNLEQMVLFRIIQGVFGAALGPLSQAVMLDMYPPAKRGNVMAIWGMGVML"
BASE COUNT          593 a          982 c          994 g          574 t
ORIGIN      
        1 catgaagaag gctttgttgg ccgctgccgc gcttgtcgcg ctgccggtcg tggctcaggc
       61 acaaacgctg cagtacccgg gcttctatgc tggccttgag ggcggcgtga actggatgct
      121 gaacaccacc attctgaacc agtcggtctc gcctcaaaca ggtttcgctg tcggtggcgt
      181 ggtcggttat gacttcgtcg gcccgcgcgt cgaggcggaa gtcgtctacc gcaacaacca
      241 gaataacgtc agtttcggcg gcacggcgat caacaaccag atcaaccagc tcggcgtcct
      301 cgccaacgtg ctgtatgact tcaacgctgg cgggcagttc gttccctata tcggcgccgg
      361 cgccggcatt gcttttgtcg acggcaacaa ctcgttcggt agcacgcaat tcgcctatca
      421 gggcatcatt ggtgttggct acaacatcac tgacacgttc cgtgtgaacc tcgatggtcg
      481 ttactacggc acgaccaacc cgcaggtcag cggcaatggg ttcaacaatc caaacaacac
      541 cttcacctcg agctggaaca acaacaactt cagcatcatg ctcggcctgc aggtgaagtt
      601 cggtgcgccg ccggtcgttg tggcgccgcc gccgccgccg gtgacccagg ctccgagcta
      661 catggtgttc ttcgactggg accgctcgaa cctgtcggcc caggccctgg ccacgatcgg
      721 ccaggccgcc aacgcctaca agactagggg tagcgcccgc atcacggcga ccggccatac
      781 cgacacgtcg ggcccggaag cctacaacat ggcgctgtcg ctgcgccgtg ccaacacggt
      841 caaggacgcg ctggtgcgca acggcgtgcc ggcgacggcg atcgccgtca tcggccgcgg
      901 cgagcagggc ctgctggtcc agaccgccga cggtgtgcgc gagccgcaaa accgccgcgt
      961 cgagatcgtc atccagtaaa acggtcccga tcgaagcaaa aaggcggccc ttgtggccgc
     1021 cttttttctt tttcgcatag ctggtgagat gaaaactgca tgacttatga tcttgcacgt
     1081 tataataacg cacgttatgt tcccgattat gaaaaccgag atgcttgtgg aactttatga
     1141 cgtggcccgc ctgatgcgga cccgtttcga ccgctgggcc cgcacctacg gcatgacccg
     1201 cgcccaaggc attatcctgg gccggctgtc gcgccagccg ggcatgaccc agaacgaaat
     1261 ggcggggctt tgcgaagttg agcccatcac cgtgggacgg ctggtggacc ggctggaagc
     1321 gcgcggcctg ctggagcgcc ggctggaccc gtccgaccgc cgcatccgcc gcctgcatct
     1381 gctgccggcc tctgagccga tcctgaagga gatccagcgc tacaaggaag aattgttctg
     1441 cgaagtcacc gaaggcctgg accaagccac ggtggacctc gtcacagctg cgctgctgaa
     1501 aatgaagacc cagctgacca tggagccggc cgcgaagatc gcggcggcgg gagagtagaa
     1561 tgtccgccat tgatgacagc atgtcggcct atccggcacg gaaacagggc tggcccgcat
     1621 cgttatgggc cgacaaggcg cgcatgcgcc gggtgctgat gatcgggggt gtgggcatct
     1681 tccttgccgt tgccgcggtc ttctatctga tgggcgggcg ctatgtctcc gccgacgatt
     1741 cctatgtgca tgccaacaag ctgatggttt ccacggatgt ttccggactg gtgcaggccg
     1801 ttaatgtcca tgaaggccag caggtgaagg cgggcgatat cctcttcacg cttgatccca
     1861 agccgtttca gatcgcgctg gacaatgcac aggccaatct ggccagcacc gtgcaggacg
     1921 tggaatccac gcgcgcatct tatcacgccg cggtggcgca ggttgctgcc cagcaggcga
     1981 tggccaccat gaatgcggcg acctatggcc gttacaaggc gctgcagaag gagaacgcca
     2041 tcgccgccat gcaggtggac acggcgcgtg ccgcccagct caattccgag gccatgaccg
     2101 cctcgctgca gcagaccgcg gcgactttgc tggtcaagct gaacggtaat cccagcctgc
     2161 cggccgagca gacccccgaa tatctcaagg ccaaagcggc ggtggatgaa gcccagcgcc
     2221 agctcgatca tgccacggtg cgcgcgccct tcgccggcac ggtgggcgaa gtggacagcc
     2281 tgcagcccgg cactctggtg atctcggcgc tgtcggcctt caccaccacc agtgccgtgg
     2341 gcctgatcgg caaggatgtg tggatctcct cggatatgaa ggaaaccgac ctgacgcatg
     2401 tgcgtcccgg cgcgccggtg gacatcacgg tggacaccta tcccggctgc aaatggagtg
     2461 ggcgtgtgga cacggtgagc gcgggcagcg acagcagctt ctcggccctg ccggcggaaa
     2521 atgccagcgg caactgggtc aaggtggtgc agcgcatccc ggtgcgggtc gccatagaca
     2581 agagcgaatg cgaccggccg ttgcgcgcgg gcatgagcgc ggtgatctcc atcgataccg
     2641 gcaagcgccg catcacgcgt tttcttgatg gactttaagc cggatgagcg agcagcacgc
     2701 cgcccacgtc tatgacagca aggttgccga atgggcggtg ctgatcggca gcatggcggg
     2761 ggtcttgatg caggcgctgg acaccaccat cgccaatgtc gcgttgcctt atatggaagg
     2821 cagcctgtcg gcgtcgcgcg accagatcac ctgggtgctg accagctaca tcatcgccgc
     2881 cgccatcatg accgcgccgg tgggctggct ggcggcgcgc ttcggcaaga agaacttatt
     2941 cgtcacctcc atcgccggct tcaccatcgc ctccatgctc tgcggcgcgg cgcaaaactt
     3001 ggagcagatg gtgttgttcc gtatcatcca aggcgtgttc ggcgccgcgc tgggcccgct
     3061 gtcccaggcg gtgatgctgg acatgtatcc gcctgccaaa cgcggcaatg tgatggcgat
     3121 ctggggtatg ggcgtgatgc tgg
//
LOCUS       DATMDK010000352         2695 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_394943,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000352 DATMDK010000000
VERSION     DATMDK010000352.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2695)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2695)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2695
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_394943"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..672
                     /locus_tag="VNN98_06865"
     CDS             <1..672
                     /locus_tag="VNN98_06865"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61854.1"
                     /translation="GDRFLGHAERCASILHLIDGTGDSIAKTYKIIRAELIAYGHGLG
                     EKTEIVALNKVDAIPQKDIAKKRAALEKACGHKVHVISGVSGEGIATVLRAMAREVNQ
                     RRLYRAEQAEFGRAAPVPRSRSERQTVNFNAPVVPKARLTAPQAVKTAAPAAAKTVVA
                     KAVVAKVMTPMAKAKAKAARKLGNAKVKKAAVKPKAKTPTGRAKARPRPMSKTAQRTK
                     KKQRR"
     gene            669..1790
                     /gene="proB"
                     /locus_tag="VNN98_06870"
     CDS             669..1790
                     /gene="proB"
                     /locus_tag="VNN98_06870"
                     /EC_number="2.7.2.11"
                     /inference="COORDINATES: protein motif:HMM:TIGR01027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004349 - glutamate 5-kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006561 - proline biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate 5-kinase"
                     /protein_id="HWM61855.1"
                     /translation="MIFSGAKLVVVKVGSALLVDSAKGELRRDWLASLCDDVAALKQQ
                     GVAVVLVSSGSIALGRRLLKLSSGALRLEESQAAAAAGQVRLAEAYADMLASRGIVAA
                     QVLLTFGDTEERRRYLNARATLGTLVELGAVPVINENDTVATAEIKFGDNDRLAARVA
                     SMMGADRLVLLSDVDGLYTADPGKDAGAQHIAEVAAITQEIEAMAGDSISGFGRGGMT
                     SKLIAAKIAMGAGCDVILAKGDTLNPLSGLTNGARHTLFRASLTPAAARKRWIAGVLR
                     PEGVLMIDDGAVRALKEGKSLLPAGIRQIDGRFERGDAVLVKDREGREIARGLAAYNA
                     SDAERIAGKRTVEIEAILGYRGRDEMIHRDDLILTGNGT"
     gene            1787..>2695
                     /locus_tag="VNN98_06875"
     CDS             1787..>2695
                     /locus_tag="VNN98_06875"
                     /EC_number="1.2.1.41"
                     /inference="COORDINATES: protein motif:HMM:NF001221.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004350 - glutamate-5-semialdehyde
                     dehydrogenase activity [Evidence IEA];
                     GO_function: GO:0016620 - oxidoreductase activity, acting
                     on the aldehyde or oxo group of donors, NAD or NADP as
                     acceptor [Evidence IEA];
                     GO_process: GO:0006561 - proline biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-5-semialdehyde dehydrogenase"
                     /protein_id="HWM61856.1"
                     /translation="MTVHNAADALAAEMMAIGAAARDAARAMREAGDAAKTKALMVAA
                     AAIRRCTAEILAANKGDIEAAKAANMSAPMVDRLMLNDARIEAMAKGIEDVAALPDPV
                     GRELARWSRPNGLDIARISTPIGVIGIIYESRPNVTADAGALALKSGNVAILRGGSDS
                     IRSAGAIHAAMVEGLKAAGLPEHAIQLVKTSDRAAVGLMLEGLNGAVDLIIPRGGKGL
                     TGRVINEARVPVLAHLEGLCHVYLHSAADLEKSRSIALNAKMRRTSVCGAAETLLIDR
                     AVLTSHGVPVLQDLAKAGCEIRGDEAV"
BASE COUNT          488 a          862 c          944 g          401 t
ORIGIN      
        1 ggcgaccgct tcctgggcca tgccgagcgc tgcgcttcga tcctgcacct gatcgacggc
       61 acgggcgatt cgatcgccaa gacctacaag atcatccgcg ccgaactgat cgcttacggt
      121 catggcctgg gtgaaaagac tgagatcgtg gcgctgaaca aggtggatgc gatcccccaa
      181 aaggatatcg ccaagaagcg cgccgcgctg gaaaaggctt gcggccacaa ggtgcatgtt
      241 atttcgggtg tgtccggtga aggcatcgcc acggtgctcc gggcgatggc gcgcgaggtc
      301 aatcagcgcc gcctgtaccg cgccgagcag gcggagttcg gccgcgccgc acccgtgccg
      361 cgcagccgca gtgagcggca aaccgtcaat ttcaatgcgc cggtggtgcc caaggcgcgg
      421 ctgacggcgc cgcaagcggt gaaaaccgct gcgcccgcag ccgccaagac cgtggtcgcc
      481 aaggccgtag tcgccaaggt tatgacgcct atggcaaaag ccaaggcgaa agccgccagg
      541 aaactgggca acgccaaggt caagaaggcg gcggtcaagc ccaaggcaaa gaccccgacc
      601 ggccgggcca aggcccggcc caggccgatg agcaagacgg cgcagcggac gaaaaagaaa
      661 cagcggcgat gattttctcc ggcgccaagc ttgtggtggt gaaggtcggc tcggcgctgc
      721 tggtggactc tgccaagggc gagttgcgcc gcgactggct ggcgtccttg tgcgacgacg
      781 tggcggcgct gaagcagcaa ggcgtggctg tggtgctggt ctcgtccggt tccatcgcat
      841 tggggcggcg gctgctcaag ctgtcctccg gcgcgctcag gctggaggaa agccaggccg
      901 cggcggcggc ggggcaggtg cgcctggcgg aagcctatgc cgacatgctg gccagccgcg
      961 gcatcgtcgc ggcccaggtg ctgctgactt ttggcgatac ggaagaacgc cgccgctatc
     1021 tcaacgcccg cgccaccctg ggcactctgg tggaattggg cgcagtgccg gtgatcaacg
     1081 agaacgacac cgtcgccacc gccgaaatca agttcggcga caatgaccgg ctggcggcgc
     1141 gcgtcgcctc gatgatgggc gccgaccggc tggtgctgct gtcggacgtg gacgggcttt
     1201 acaccgccga tcccggcaag gatgccggcg cccagcatat cgcggaggtt gccgccatca
     1261 cgcaagagat cgaggcgatg gcgggggatt cgatttccgg cttcgggcgc ggcggcatga
     1321 cctccaagct gatcgccgcc aagatcgcca tgggcgcggg ctgcgatgtc attctagcca
     1381 agggggacac gctcaatccg ctgtcggggc tcaccaacgg cgcgcgccat accctattcc
     1441 gcgcctccct cacgccggcc gccgcgcgca agcgctggat cgcgggcgtg ctgcggcccg
     1501 aaggcgtgct gatgatcgac gatggcgcgg tgcgcgccct gaaggaaggc aagagcctgc
     1561 tccccgccgg tatccgccag atcgacgggc ggttcgagcg cggcgatgcc gtgctggtaa
     1621 aagaccggga agggcgcgaa atcgcccgcg gcttggcggc ctataatgcc tcggatgcgg
     1681 agcggatcgc cggcaaacgc acggtcgaaa tcgaggccat tctgggctat cgtggccggg
     1741 acgaaatgat ccaccgcgac gacctgatcc tgacgggaaa cggaacatga cggtccacaa
     1801 tgccgccgat gcgcttgctg ccgagatgat ggctatcggc gctgccgcgc gcgacgcggc
     1861 ccgcgccatg cgcgaagccg gcgatgcggc caagaccaag gcgctgatgg tggccgccgc
     1921 cgccatccgc cgctgcaccg cggaaattct ggccgccaac aagggcgaca tcgaagcggc
     1981 caaggccgcg aacatgtccg cgccgatggt ggaccgcctg atgctgaacg atgcccgcat
     2041 cgaggcgatg gccaaaggca tagaagacgt ggccgcgctt cccgacccgg tgggacgcga
     2101 actggcgcgc tggtcgcggc ccaatgggct ggacattgcc cgcatctcca cgcccatcgg
     2161 cgtgattgga atcatctatg aatcccgccc caatgtgacg gcggatgccg gtgcgctggc
     2221 gctgaaatcc ggcaatgtcg ccatcctgcg cggcggttcg gattccatcc gctcggccgg
     2281 cgccatccat gccgcgatgg tggaaggcct gaaggcggcg ggcctgcccg aacatgccat
     2341 ccagctggtg aagaccagcg accgtgccgc ggtgggcctg atgctggaag ggcttaatgg
     2401 cgcggtggac ctgatcattc cgcgcggcgg caagggcctg accggacgcg tcatcaacga
     2461 ggcgcgggtg ccggtgctgg cccatctgga agggctttgc catgtctatc tgcattccgc
     2521 cgccgatctg gagaaatccc gcagcatcgc gctgaacgcc aagatgcggc gcaccagcgt
     2581 ctgcggcgcg gcggagacct tgctgattga ccgcgccgtc ctgacgtccc atggcgtgcc
     2641 ggtgctgcaa gatctggcca aagcgggctg cgagattcgc ggcgacgaag cggtg
//
LOCUS       DATMDK010000353         2383 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1766855,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000353 DATMDK010000000
VERSION     DATMDK010000353.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2383)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2383)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2383
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1766855"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1267
                     /locus_tag="VNN98_06880"
     CDS             <1..1267
                     /locus_tag="VNN98_06880"
                     /inference="COORDINATES: protein motif:HMM:NF005702.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HWM61857.1"
                     /translation="YLPLNTGYTASELTYFVGDAEPRVFICAEKDREKIAAALPGTEL
                     LSLGDDGLSGSLIAEAAAAPADFTDADVGMTDLASILYTSGTTGRSKGAMLSHGNLCS
                     NAQTLKQVWRFSDKDVLLHALPIFHIHGLFVASNVTLISGASMILLPKFDLDAIFQSL
                     PGATVMMGVPTFYTRMLQDRRLNQEATRHVRLFVSGSAPLLAETHRQWHERTGHAILE
                     RYGMTETGMNTSNPYEGLRVPGSVGLPLPGVALRIADKAGNALPQGEIGMIEVRGPNV
                     FQGYWRMPEKTAAEFRQDGYFMTGDLGTIDAQGYVHIVGRDKDLIISGGFNVYPKEIE
                     SLIDELPGVEESAVVGLPHHDFGEGVTAFVIKKDASLTEQDVLGALGETLARFKHPKR
                     VIFLDQLPRNTMGKVQKSLMRESYKNLYG"
     gene            complement(1264..>2383)
                     /locus_tag="VNN98_06885"
     CDS             complement(1264..>2383)
                     /locus_tag="VNN98_06885"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HWM61858.1"
                     /translation="MANSPADIAFAGSILFALFLVGWGCSFIWGPIADRFGRAKCLAV
                     TILIFSVFTGAAAFAHNVWELGLFRFLAGIGIGGEWAMAGTYVAEAWPEDRRKQGAGY
                     LQTGYYAGFFLAAALNFTIGATFGWRAMFLCGAAPMLVALFTLVRVKEPARWERKHAG
                     PRSRPLAMIFSGGNLRRTVVNTALVSIAIIGLWAGTVYEPTALLTLAKKAGFTAGQGV
                     KLASLGTAVLSVGSILGCLLAPVLAERFGRKKTLALYFIGMASAILLAFGWAFYLPNG
                     LVPFIIVLFFLGLAGGNFAIFSLWLPEQYNTAMRATAFAFCTSFGRFLGAGANFAIAG
                     LIQWTGSLGHIIALTAIPFVIGLAIIPFAVETKGEVLP"
BASE COUNT          519 a          737 c          721 g          406 t
ORIGIN      
        1 ctatctgccg ctcaataccg gctacaccgc cagcgagctg acatatttcg tgggcgatgc
       61 cgagccgcgc gtttttatct gcgccgaaaa agaccgggag aaaatcgccg ccgccctgcc
      121 cggcaccgaa cttctctccc ttggcgatga cggcctgtcg ggctcactga tcgcagaagc
      181 cgctgctgcg ccggccgatt ttaccgatgc cgatgtcggc atgaccgacc tggcgtccat
      241 tctttacacc tccggcacca cgggccggtc caagggtgcg atgctcagcc acggcaatct
      301 gtgctcgaat gcgcagaccc tcaaacaggt ctggcgtttt tcagataaag acgtgctgct
      361 gcatgccctg ccgatatttc atattcacgg cctgttcgtc gccagcaatg tcacgctgat
      421 atccggcgcc agcatgatcc tgctgccaaa attcgacctg gatgcgatct tccaatccct
      481 gcccggtgcc acggtgatga tgggggtgcc gaccttctat acccgcatgc tgcaggaccg
      541 gcgcctgaac caagaggcga cccgccacgt tcggcttttc gtatctggct ccgcgccgct
      601 gctggcggaa acgcatcgcc aatggcacga gcgcaccggc cacgccatcc tggaacgcta
      661 tggcatgacc gaaaccggta tgaacacctc caatccttat gaggggctgc gcgttcccgg
      721 atcggtcggt ctgcctttgc ccggcgtagc actgcgtatc gcggacaaag ctgggaacgc
      781 gctgccgcaa ggcgagatcg ggatgatcga agtgcgcggt cccaatgtct ttcagggcta
      841 ttggcggatg ccggagaaaa ccgccgccga atttcgccag gacggatact tcatgaccgg
      901 cgatctgggc accatcgatg cccagggcta tgttcatatc gtggggcgcg acaaagattt
      961 gatcatcagc ggcgggttca atgtctatcc caaggaaatc gaaagcctga tcgacgaact
     1021 gcccggggtg gaagagtcgg cggtggtcgg cctgccgcac catgattttg gcgaaggcgt
     1081 caccgctttt gttattaaaa aggacgccag cctcacggaa caggatgtgc tgggcgcatt
     1141 gggcgagacc ttggcgcgct tcaagcatcc caagcgggtg atcttcctgg atcaacttcc
     1201 ccgcaacacc atgggcaagg tgcagaaaag tctgatgcgc gagagttaca agaatctgta
     1261 cggctaaggc agaacttcgc ccttggtttc caccgcaaag ggaatgatcg ccagtccgat
     1321 gacaaagggg atcgcggtca gggcgatgat gtgacccagc gatcctgtcc attggatcag
     1381 cccggcaatg gcaaaatttg cccccgctcc cagaaagcgt ccgaaggatg tgcagaaggc
     1441 aaaggccgtg gcccgcatgg cggtgttata ttgctccggc aaccacaggc tgaagatcgc
     1501 gaaattgccg ccggccaggc ccaggaagaa caacacgata atgaagggga ccagaccgtt
     1561 cggcaggtag aaggcccagc cgaaggccag cagaatggcg ctggccatgc cgatgaaata
     1621 cagcgccagg gttttcttgc ggccaaagcg ctccgccaga accggcgcca gcaggcagcc
     1681 caggatcgaa ccgacggaca gcacggccgt gccaagggag gccagcttga cgccctgacc
     1741 cgcggtgaaa cccgctttct tcgccagggt cagaagcgcg gtgggctcat acaccgttcc
     1801 tgcccacagt ccgatgatgg cgatggaaac cagcgcggta ttcaccacgg tgcgccgcag
     1861 attgccgccg gaaaagatca tcgccagagg acggctgcgc ggcccggcat gcttgcgttc
     1921 ccagcgggcg ggctctttga cgcgcaccag ggtgaacagc gccaccagca tgggcgcggc
     1981 gccgcacagg aacatggccc gccagccgaa ggtcgcgcca atggtgaaat tgagcgccgc
     2041 cgccagaaag aagcccgcat agtagcctgt ctgcagataa ccggcgccct gcttgcggcg
     2101 gtcttccggc caggcctcgg cgacataggt gccggccatg gcccattcgc cgccaatgcc
     2161 gatgccggcc aggaaacgga acaatcccaa ctcccagaca ttgtgggcga aggccgctgc
     2221 gccggtgaac accgaaaaga tcaggatggt cacggccagg cattttgcac ggccaaagcg
     2281 gtcggcaatc ggaccccaga tgaaggaaca gccccagccc accagaaaca gcgcaaacag
     2341 gatcgaaccg gcaaaggcga tatcggcggg gctgttggcc ata
//
LOCUS       DATMDK010000354         3012 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_640624,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000354 DATMDK010000000
VERSION     DATMDK010000354.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3012)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3012)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3012
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_640624"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1743
                     /locus_tag="VNN98_06890"
     CDS             <1..1743
                     /locus_tag="VNN98_06890"
                     /inference="COORDINATES: protein motif:HMM:NF017745.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF885 family protein"
                     /protein_id="HWM61859.1"
                     /translation="PLSTLFGALSDALLKDSPETATFLGLDKGARAGLKSQLSDQSWG
                     HVAKDHEVCAAWLAKLDAIAPASPAAQLDKEVVAYALTLGRDAGKFDFGENTLASAMN
                     EDSSPYVVSQETGSFVGIPEFLDSQHKIETKADADAYLARVEAWAGVLDQETARVKRD
                     AGLGVAPPDFLLATALGQMERFAGMQAGDQRLVSSLANRAKQKSITGDYTGQATKLVA
                     DKIYPAVGRQIAALKAVAAKATPDAGVWKLKDGEAYYDWLLKVGTTTPMTAQEIHALG
                     LAQNAQIMARMDALLKKQGLTKGTVGERMTALGRDPRFVYPDNDTGRAQILAFLSDRI
                     AAVRLKLPELFNLKLKAPVIIKRVPADIQDGAPQGYMNPGAIDGSRPSTYYINLKTTA
                     NWPRFSLPTLTYHETIPGHAWQGAYLNETGKLPLIRIILSGFNAYVEGWALYAEQLAD
                     ELGMYAEDPVGELGYLQAQQFRACRLVADTGLHAMRWTRTQTIDWMVTNTGKPRASIQ
                     SEVDRYCGTPGQACGYKIGHTEINRLRDKAKAALGAKFDLRDFNDTVVKAGAVPMTVL
                     ASVIDGHVKTLKSA"
     gene            complement(1752..>3012)
                     /locus_tag="VNN98_06895"
     CDS             complement(1752..>3012)
                     /locus_tag="VNN98_06895"
                     /inference="COORDINATES: protein motif:HMM:NF025134.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="putative 2OG-Fe(II) oxygenase"
                     /protein_id="HWM61860.1"
                     /translation="GTVLHALKRYDDAIAAFGRAIALKPLRFESHFALAGTLAATGRE
                     DEAIRSYKRAIEAQPDYLPAHREYNNLVHAMGRDVRALQSYAFGRSQAGDTPDLLLAE
                     AELMLRLNDGAGAERLLRLAPQDRADVANAQGRALALDGRFEDAAEILQRAVRAEPAA
                     VTHYHALAVALLRAGLAAPAQDILLQALALDPHHQATLGYLTLAYRQLGKSEFSRLFD
                     PATLVREYQLPVPAGFADPQSFNNALATELARLHTRRVAPIDQTLQGGTQTAAGLFDR
                     DVREIRLLRDAVQEAVADYIKSLPADAQHPFLSRRDSEFRFSGSWSCRLASGGFHTNH
                     IHEEGWISSAYYAALPGDLGAGGEGALKFGQSSLALGEEDRPGRLVQPQIGKLVLFPS
                     YYWHGTTPFHAEQSRLAVAFDVLPGRS"
BASE COUNT          557 a          968 c         1008 g          479 t
ORIGIN      
        1 ccgctcagca cgctgttcgg tgcgctgtcc gacgcgctgt tgaaagacag cccggagacc
       61 gcaactttcc tgggcctcga caagggcgcg cgcgccggcc tgaagtcgca gctttccgac
      121 cagtcctggg ggcatgtcgc caaagatcac gaagtctgcg ccgcctggct tgcgaaactg
      181 gacgccatcg cgcccgcctc gccggcagcc cagctcgaca aagaggtcgt tgcttatgct
      241 ctgaccctgg ggcgcgatgc gggcaagttc gatttcggcg agaatacgct ggcgtccgca
      301 atgaacgaag attccagccc ctatgtcgtg agccaggaaa cgggcagctt cgtcggcatt
      361 cccgaattcc tcgacagcca gcataaaatc gaaaccaagg ccgatgccga cgcctatctc
      421 gcccgcgtgg aagcctgggc gggcgtactg gaccaggaga ccgcgcgggt gaagcgcgat
      481 gccggcctgg gcgtggcgcc gccggatttc ctgctggcga cggcgctggg ccagatggag
      541 cgttttgccg ggatgcaggc gggggaccag cgcctggtgt cgtcgctggc gaaccgcgcc
      601 aaacaaaaat ccattacggg tgactatacc ggccaggcga ccaagctggt cgccgacaaa
      661 atctatcccg ctgtgggacg tcagatcgcg gcgctgaaag ccgtcgcggc gaaggcgacg
      721 cccgacgccg gggtgtggaa gctcaaggac ggcgaggcct attacgattg gctgctgaag
      781 gtgggcacca ccacgcccat gacggcgcag gagattcacg ccctgggcct ggcccagaat
      841 gcgcagatca tggcgcggat ggatgcgctg ctgaaaaagc agggtctgac caagggcaca
      901 gtgggcgagc ggatgacggc gctggggcgc gacccgcgct ttgtgtatcc ggacaatgac
      961 accggacgcg cccagatcct tgcctttctc agcgaccgca tcgcggcggt gcgcctcaaa
     1021 ctgcccgaac tcttcaatct caagctgaaa gcgccggtca tcatcaagcg cgtgccggcg
     1081 gacatccagg acggggcgcc gcagggctac atgaacccag gcgcgatcga cggatcgcgg
     1141 ccctcgacct attacatcaa cctcaagacc acggcgaact ggccgcgctt cagcctgccg
     1201 accctgacct atcatgagac cattcccggc catgcctggc agggcgctta tctcaacgaa
     1261 actggcaagc tgccgctgat ccgcatcatc ctcagcggct ttaatgccta tgtcgaaggc
     1321 tgggcgctgt atgccgagca gctggccgac gagcttggca tgtatgcgga agaccccgtc
     1381 ggcgagctcg gttatctgca ggcgcagcag ttccgcgcct gccgtctggt cgccgacacc
     1441 gggctgcatg ccatgcgctg gacgcggacg cagaccatcg actggatggt gaccaatacc
     1501 ggcaagccgc gcgccagcat acaaagcgaa gtcgaccgct attgcggtac gcccggacag
     1561 gcctgcggct acaagatcgg ccataccgag atcaaccgcc tgcgcgacaa ggccaaggcg
     1621 gcactgggcg cgaagttcga tctgcgcgat ttcaacgaca cggtggtgaa ggcgggcgcg
     1681 gtgccgatga cggtgctggc ctcggtgatc gacggccatg tgaagacgct aaagtcggcc
     1741 tgagcccgcg gttaactgcg gcccggcagg acgtcgaagg cgaccgccag gcgggactgt
     1801 tcggcgtgaa aaggcgtcgt cccgtgccaa taataggacg ggaacagcac cagcttgccg
     1861 atctggggct gcaccaggcg gccgggccgg tcttcctcgc ccagcgccaa gctggactgg
     1921 ccgaatttca gcgccccttc gccgccggcg cccaggtcgc ctggcagggc ggcgtaatag
     1981 gccgaactga tccagccttc ttcatggatg tggttggtat gaaatccgcc cgaggccagg
     2041 cggcaggacc atgagccgga aaaacgaaat tcgctgtcgc ggcgcgacag aaagggatgc
     2101 tgcgcgtccg ccgggaggct ttttatataa tcggccaccg cctcctgcac cgcatcgcgc
     2161 agcaggcgga tttcgcgcac atcgcggtcg aacagcccgg ccgcggtctg ggtgccgccc
     2221 tgcagggtct gatctatcgg cgccacgcgg cgggtgtgca gccttgccag ttccgtggcc
     2281 agggcgttgt tgaagctttg cggatcggca aaacccgccg ggaccggcag ctgatattcg
     2341 cgcaccaggg tggccggatc gaagagtcgg gaaaattcgg acttgccgag ctggcgatag
     2401 gcgagggtga gataacccag cgtcgcctgg tgatggggat ccagcgccag cgcctgcagc
     2461 aggatgtcct gcgccggcgc ggcgagacct gcgcgtagca aggcaacggc cagggcatga
     2521 taatgcgtta ccgccgccgg ttcggcccgc accgcgcgct gcaatatctc cgcggcgtcc
     2581 tcgaaacggc catccagcgc cagcgcgcgg ccctgcgcat tggcgacatc ggcgcgatcc
     2641 tggggcgcca ggcgcagcag gcgttccgcg cccgcgccgt cattcaggcg caacatcagt
     2701 tcggcctccg ccagcagcag gtccggcgtg tcgcccgcct ggctgcgccc gaaggcataa
     2761 gactggagcg cgcgcacgtc ccggcccatg gcatggacca gattgttgta ttcgcggtgc
     2821 gccggcagat agtcgggctg cgcctcgatc gcgcgcttgt aggagcggat ggcctcgtct
     2881 tcgcggccgg ttgccgccag cgtccccgcc agcgcgaagt gggattcaaa ccgtagcggt
     2941 ttcagtgcga tggccctgcc aaaggcggcg atggcgtcat catagcgctt caaggcatgc
     3001 agcacggtgc cg
//
LOCUS       DATMDK010000355         2125 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2226249,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000355 DATMDK010000000
VERSION     DATMDK010000355.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2125)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2125)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2125
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2226249"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1547
                     /locus_tag="VNN98_06900"
     CDS             <1..1547
                     /locus_tag="VNN98_06900"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="HAMP domain-containing sensor histidine kinase"
                     /protein_id="HWM61861.1"
                     /translation="GQQARNRPLPWGNWLLSSLTVKLVLLVGILVALPILLYRQFEAA
                     DQKNRAFVSNALQRQSVLIAQGLRPMLDTPGGLPPDLNSTLARYAGDGTSLKLMLAPS
                     SQAGRDFFYVAAAPDGDPARLDVELQKLNHNGILQQLAPTCADETAAEIRNGLPGARN
                     EMLTSVIPIKSRWGCWVLVSSHPASELFNTAIGEHYWNVRQIRIAVVIYAALTLVGCF
                     IAWSVLRAVRRFRRVAYAIRRGRIYERSFSSQNDIPELAPVAADFDRLVLDLHSTARD
                     IRRKAEDNAHSFKTPLATIRASLSPLRQAAGASDARVSKAIALIDSSVSRLNTLILDA
                     QRVDNFTADSIDTPRDSINLYQVIVRAVTEFREITAARGMRFVLHLADDARVFANEDA
                     LEIAIENILDNAVGFSPDNSAIEIRLAATVSEVTLDITDHGPGVPNDVLPLIFDRYFS
                     LRPPAGGRAGYDEAWDGQAGNSGLGLWIVRQNVEAVGGKVFAANRPNQGLRVSIVLPK
                     SDSENS"
     gene            1625..2059
                     /locus_tag="VNN98_06905"
     CDS             1625..2059
                     /locus_tag="VNN98_06905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003110349.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter"
                     /protein_id="HWM61862.1"
                     /translation="MMKPLFSSWMLWAGFSAIFAALTAIFGKIGVEQINSDFATLIRT
                     AIILVVVGLIVMASGAWQPVAGVSRKTYLFLLLSGLATGASWLCYYRALKLGPASGVA
                     PIDKMSVVLVALFAAVFLGERPQAHNWIGICLIALGAVLVAL"
BASE COUNT          370 a          632 c          664 g          459 t
ORIGIN      
        1 gcggccagca ggcgcgtaac agaccgcttc cctggggaaa ttggcttctg tcgtcgttga
       61 cggtgaagct ggtgctgctg gtcggcattc tcgttgcgct gccgatattg ctgtaccgtc
      121 agttcgaggc cgctgaccag aaaaaccggg cgtttgtttc caacgccctg cagcgccaga
      181 gcgtgttgat cgcccaaggc ctgaggccca tgctggatac gccgggcgga ttgccgccgg
      241 atttgaacag cacgctggca agatatgcgg gggacggcac atcgctcaaa ctgatgctgg
      301 cgcccagcag ccaggcgggc agggatttct tttatgtcgc cgcggcgcca gatggcgatc
      361 cggcccgtct ggacgtggaa ctgcaaaaac tcaaccacaa cggcatattg cagcagcttg
      421 cgccgacctg tgcggatgag accgcagcgg aaatccgcaa tggcctgccg ggggcccgca
      481 acgagatgct gacctccgtc attcccatca agagccgctg gggctgctgg gtgttggtct
      541 cgtcgcaccc ggcctcggaa cttttcaaca ccgcgatagg ggagcattat tggaacgtcc
      601 ggcaaatccg catcgccgtc gtgatttatg cagccttgac cttggtgggc tgcttcatcg
      661 cctggagtgt gctgcgcgcc gtgcgccggt tccgccgggt ggcctatgcc atccggcgcg
      721 gacgcatcta tgaacgcagc ttttcgtccc agaacgacat accggaactg gcccctgtgg
      781 cggcggattt cgaccggctg gtgctggatc tgcattcgac cgcgcgcgac atccgccgca
      841 aggcggaaga caatgcccac tccttcaaga cgccgctggc cacgattcgc gcctcgcttt
      901 ctccgcttcg ccaggcggcc ggcgcaagcg acgcaagggt gagcaaggcg attgccctta
      961 tcgattcctc ggtcagccgg ttgaacaccc tcatcctgga tgcgcaacgg gtggacaatt
     1021 tcacggcgga ttcgatcgac acgccccgcg atagcatcaa cctttatcaa gtgatcgttc
     1081 gtgcggtaac cgaattccgc gagatcaccg cggcccgcgg catgcgattc gtcctgcatc
     1141 tggcggatga tgcccgcgta ttcgccaatg aggatgcgct ggagatcgcg atcgaaaaca
     1201 ttctcgacaa tgccgtcggc ttctcgcccg acaacagcgc catcgaaatc cggctggcag
     1261 ccactgtcag cgaggtaacg ctcgacatca ccgatcatgg ccccggcgtg ccgaacgatg
     1321 tgctgccgct gatcttcgat cgttattttt cgctgcggcc gcccgccggc ggccgcgcgg
     1381 gatatgatga agcctgggat gggcaagccg gcaattccgg tctgggccta tggatcgtgc
     1441 gccagaatgt cgaggcagtg ggcggaaagg tgtttgccgc caatcgtccg aaccagggct
     1501 tgcgcgtttc catcgttctt cccaaatccg acagcgaaaa tagctgattg ccgtgactcg
     1561 ggggcccggc gcgggacata atgtctggcg cttggccttt cgggcgcgcg cacccattgg
     1621 gggaatgatg aagccgctat tctcctcatg gatgttgtgg gcggggttct ctgcgatctt
     1681 cgccgccttg acggcgatct tcggaaaaat cggcgttgag cagatcaatt cggatttcgc
     1741 caccttgatc cggacggcga tcattcttgt cgttgtgggt ctgatcgtca tggcaagcgg
     1801 cgcctggcaa ccggtcgccg gcgtttcgcg caagacctat ctgtttttgc tgctgtcggg
     1861 cctggccaca ggcgcatcgt ggctttgcta ttatcgcgcg ctcaagcttg gcccggcttc
     1921 gggcgtggcg cccatagata aaatgagtgt ggtgctggtg gcgctgttcg ctgcggtgtt
     1981 tctgggagag cgtccgcagg cccataattg gatcggcatt tgcctgattg cgttgggcgc
     2041 ggttctggtg gcgttgtagc gcgccggtcc ggacattgta acgcttttgc gacaaccggg
     2101 cctcactctt tttaaaataa cattt
//
LOCUS       DATMDK010000356         3264 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2226388,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000356 DATMDK010000000
VERSION     DATMDK010000356.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3264)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3264)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3264
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2226388"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1413
                     /gene="recG"
                     /locus_tag="VNN98_06910"
     CDS             <1..1413
                     /gene="recG"
                     /locus_tag="VNN98_06910"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: protein motif:HMM:NF008164.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003678 - DNA helicase activity [Evidence
                     IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase RecG"
                     /protein_id="HWM61863.1"
                     /translation="DELLANQLALLLIRANLRGGKGRTISGTGELKARVIAALPFVLT
                     DPQLGALAEIEQDMASEKRMLRLLQGDVGSGKTIVALLAMLGAVEAGLQAALMAPTEL
                     LVRQHLASLEPYAKAAGIRLACLTGREKGVARETTLAKLAAGEIDILVGTHALFSDDV
                     TFKDLGLAVVDEQHRFGVHQRMQLQSKGKPADVLVMTATPIPRTLALTAYGDMDVSKI
                     TGRPPGRKPVETRVMGAARMDDLITHLRTALDRGARAYWVCPLVEESEKIDLAAAQER
                     AVMLRQALGLNVGLVHGKMKAAERDAAMLAFKTGETQLLVATTVIEVGVDVPEATIMV
                     VEHAERFGLAQLHQLRGRVGRGPGKSSCILLWHEPLGQTAKARLKTMRETDDGFVIAE
                     EDLRLRGPGEVLGKRQSGLEEFRMADPIAHADLLAVAHDDARLILNRDPDLKSPRGDA
                     LRMLLYLFGRDEAVRYLRTG"
     gene            complement(1447..1737)
                     /locus_tag="VNN98_06915"
     CDS             complement(1447..1737)
                     /locus_tag="VNN98_06915"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61864.1"
                     /translation="MKLAAIAVFAALAATPALAASVYPDTTTVAPDPGVDSRVAMENQ
                     ARQNYYQHQLEAANAQAEADNARAQAERAAAERDTALDRAADDRADIDDAER"
     gene            complement(1842..2630)
                     /locus_tag="VNN98_06920"
     CDS             complement(1842..2630)
                     /locus_tag="VNN98_06920"
                     /inference="COORDINATES: protein motif:HMM:NF014724.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdcF family protein"
                     /protein_id="HWM61865.1"
                     /translation="MPSMFFAVSKLFWLLATPSHVLAWLVMLAALFGLAGRARPARAL
                     IVAAALVVLLAGMSPLNMLLIRALENRYPRPAWPSHVDGILMLGEGFDTAILKARGVP
                     PTNGGEIRVIAGFEAARRYPHAKVVFSGGSGVGAADPEAKTARYIFAQLGLDPARLIL
                     EPRSRNTFENIQYSKALVQPKPGEVWLLTTSAIQMPRAMAVARKLEWPMLPWPTDYLT
                     MPSGEHRLHATFDIADGLFLSDYAFHEWVGLSAYQAAGKSAAGK"
     gene            2710..>3264
                     /locus_tag="VNN98_06925"
     CDS             2710..>3264
                     /locus_tag="VNN98_06925"
                     /inference="COORDINATES: protein motif:HMM:NF013434.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HWM61866.1"
                     /translation="MERFETDAVVIGAGAVGLAVARQLALSGLETLILEKNDHFGMET
                     SARNSEVIHAGIYYPQGSLKARLCVAGRRLLYDFCAAHGVPHKAIGKLIVAHSGQAAQ
                     LAAIAKAAADNGVDDLAPLSAKDIAALEPAVKAEEGLFSPSTGIIDSHQYMLALLGDM
                     TLVRGSEVTAIMRRGDGWSLSVRSG"
BASE COUNT          612 a         1026 c         1070 g          556 t
ORIGIN      
        1 gatgaactct tggccaacca gctcgccctg ctgctgatcc gcgccaattt gcgcggcggc
       61 aaagggcgga ccatcagcgg cacaggggaa ttgaaagcga gagtcatcgc cgccctgccc
      121 ttcgtcctca ccgatccgca acttggcgcc ctggccgaga tcgaacagga catggcctcc
      181 gaaaaacgta tgttgcggct gctgcaaggc gatgtcggct ccggcaagac catcgtggcg
      241 ctgctggcca tgctgggcgc ggtggaagcg ggcctgcagg cggcgctgat ggcgcccacc
      301 gaactgctgg tgcgtcagca tctcgcctcg ctggagccct acgccaaagc agcggggata
      361 cggctggctt gtctgacagg acgcgaaaaa ggtgtggcgc gcgaaaccac cctggcgaaa
      421 ctggcggcgg gcgagatcga cattctggtc ggcacccatg ctctattttc cgatgatgtc
      481 accttcaagg atctgggcct ggccgtggtg gacgaacagc accgcttcgg cgtgcatcag
      541 cgcatgcagc ttcaatccaa aggtaaaccg gccgatgtgc tggtgatgac cgccacaccc
      601 attccgcgca ccttggcgct gaccgcctat ggcgacatgg acgtgtccaa gatcaccggc
      661 cgcccgccgg gacgcaaacc agttgagacg cgggtgatgg gcgcggctcg catggacgat
      721 ctgattactc atttgcgtac cgcgctggat cgtggcgcgc gcgcctattg ggtctgcccg
      781 ctggtggagg aatccgaaaa gatcgacctg gccgccgccc aggaacgcgc cgtgatgctg
      841 cgccaggcat tggggctcaa tgtcgggttg gtacatggca aaatgaaagc agcagagcgc
      901 gacgctgcca tgctggcttt caagaccggc gagacccagc tgctggtcgc caccacggtg
      961 atcgaggttg gggtggacgt gccggaagcc accatcatgg tggtggaaca tgccgagcgt
     1021 ttcggcctgg cccagctgca tcaactgcgc ggcagagtcg gacgcgggcc gggcaagtcc
     1081 agttgcatcc tgctatggca tgagccgctg ggccagaccg ccaaggcgcg gctgaaaacc
     1141 atgcgcgaga ccgatgacgg tttcgtcatt gcggaagaag acctgcgcct gcgcggtccc
     1201 ggcgaagtgt tgggcaagcg ccaaagcggg ctggaggaat tccgcatggc cgatccgatc
     1261 gcccatgccg acctgctggc cgtggcccat gacgatgcgc ggctgatcct gaaccgcgat
     1321 cccgatctca aatcaccgcg cggcgacgcg ctgcggatgc tgctctatct gttcgggcgc
     1381 gacgaagcgg tgcgctatct gcgcaccggg tgaagaaaag cccgccggga agacgggctt
     1441 ttccggttat cgttccgcgt cgtcgatatc ggcgcgatcg tcggccgccc gatccaaggc
     1501 ggtatcgcgt tcggcggcgg cccgttcggc ttgggcccgc gcattatccg cttcggcctg
     1561 tgcgttggcg gcctccagct ggtgctgata gtaattctgc cgcgcctggt tctccatcgc
     1621 cacacggctg tcgacgccgg ggtcgggcgc taccgttgtg gtgtcgggat agaccgatgc
     1681 tgccagcgcc ggcgtggcgg ccagcgccgc gaaaacagcg attgctgcaa gtttcattct
     1741 gctctcctgc ttgggcgttg ccaggaagac aacaacctgc cggcgcagag gttgcggcgg
     1801 ttccttcagg aacctggatg ggaaccacgc cggagaatat tctattttcc cgcggcggat
     1861 tttccggccg cctgataagc cgacagaccc acccattcgt ggaaggcata atcgctgagg
     1921 aagagaccat cggcgatgtc gaaagtagca tgcaggcgat gctccccgga aggcatggtc
     1981 agatagtcgg taggccaggg cagcattggc cattccagct ttcgggcaac cgccatggca
     2041 cggggcatct ggatggcaga ggtggtcaac agccagacct cgcccggctt cggttgcacc
     2101 agtgctttgg agtactggat attttcaaag gtattgcgcg aacgcggctc caatatcaat
     2161 cgcgccgggt ccaatcccaa ctgcgcgaat atatagcgcg cggttttcgc ctccggatca
     2221 gccgcgccca cgcccgaccc cccgctgaac acgactttgg catgaggata gcgccgcgcc
     2281 gcctcgaagc cggcaatcac ccgaatctcg cccccattgg tggggggcac accgcgtgcc
     2341 tttaatatgg cggtgtcgaa cccctcgccc agcatcagaa tgccgtccac atgcgacggc
     2401 caggctggcc ggggatagcg attttccagc gcacggatca gcaacatgtt caggggcgac
     2461 atgcctgcca gcagcactac cagcgccgcc gccacaatca gggcgcgcgc cggccgcgcc
     2521 cgccccgcca gcccgaacag ggccgccagc atcaccagcc aggccaggac gtgactgggc
     2581 gtggccagca gccagaagag tttggacacc gcaaagaaca tggacggcat agcgtcataa
     2641 aagcgccgac cggacaagcc atcaggcagc cgggttgccg cagcgtcgct ttcgcggcaa
     2701 gaagcggtga tggagcgctt tgaaacagac gcggttgtga tcggcgcggg cgcggtgggc
     2761 ctggcggtgg cgcggcagct tgcgctgtcg gggctggaaa ccctgatcct ggaaaagaac
     2821 gatcatttcg gaatggagac cagcgcccgc aacagcgagg tcatccatgc cgggatctat
     2881 tatccgcaag gctcgttgaa ggcgcggctg tgcgtggcgg ggcgccgcct gctgtatgat
     2941 ttctgcgccg cccatggcgt gccgcacaaa gccatcggca agctgatcgt ggcgcacagc
     3001 ggccaggcgg cccagctggc cgccatcgcc aaggcggcgg ccgataacgg cgtggacgat
     3061 cttgcgcccc tcagcgccaa ggacatcgcg gcactggagc cggccgtaaa agccgaagag
     3121 ggactcttct ccccttccac cggtatcatc gacagccatc aatatatgct ggcgctgctg
     3181 ggcgacatga ccctggtacg cggcagcgaa gtgaccgcca tcatgcgccg cggcgatggc
     3241 tggtcgctgt ctgtgcgcag cggc
//
LOCUS       DATMDK010000357         2744 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2227005,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000357 DATMDK010000000
VERSION     DATMDK010000357.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2744)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2744)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2744
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2227005"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            136..789
                     /locus_tag="VNN98_06930"
     CDS             136..789
                     /locus_tag="VNN98_06930"
                     /inference="COORDINATES: protein motif:HMM:NF012894.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015288 - porin activity [Evidence IEA];
                     GO_function: GO:0042834 - peptidoglycan binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="OmpA family protein"
                     /protein_id="HWM61867.1"
                     /translation="MANPSDSQLGFRPSSAPPLNPGVAQWVAPPILAHYRQTAALTGS
                     AGTGIPAVAAVPAVSGRRGARGMGGPTSMSGDVVANLDAVPGSPAGMAAAMNGGMPPT
                     AIIYFPGDGTSLPAAARAQVRDAVAAFQAGGGTGSVKVVGHASSRTANMPVERHLEVI
                     FQKSQARANAVAQALIKAGVPADRVQIEAVGDSQPVYYESMPKGEDGNRRAEIFVQG"
     gene            916..2130
                     /locus_tag="VNN98_06935"
     CDS             916..2130
                     /locus_tag="VNN98_06935"
                     /EC_number="2.6.1.83"
                     /inference="COORDINATES: protein motif:HMM:NF006604.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LL-diaminopimelate aminotransferase"
                     /protein_id="HWM61868.1"
                     /translation="MNTDFYRIKRLPPYIFEEVNRLKAQARARGEDIIDFGMGNPDMA
                     TPDWIVDKLCETARDPRAHRYSASRGIKGLRKAHVAYYQRRFGVTLDPDREVIAALGS
                     KEGFANLAMAITAPGDVVLVPNPAYPIHAFGFMIAGAAIRHVPATSPEEYLSRIGTAT
                     RHSVPSPLALVVNYPSNPTAQVVDLDFYKEIIKFAKKHEIWVLSDLAYADIYFGDNPP
                     PSILQVDGAKDIAIEFQSLSKTYSMPGWRMGFAAGNEKLIGALARIKSYLDYGAFTPI
                     QVAAAAALNGPQTVVEEIRAVYKSRRDVLVKSMAAAGWEIPPPEASMFAWAPVPEKYR
                     SLGSMEFAKDLLIHAKVAVSPGIGFGEYGEGYVRVALVENEHRIRQAARNVKKFLTMG
                     TNIAPKDLAPAK"
     gene            2127..>2744
                     /locus_tag="VNN98_06940"
     CDS             2127..>2744
                     /locus_tag="VNN98_06940"
                     /EC_number="1.1.1.3"
                     /inference="COORDINATES: protein motif:HMM:NF004976.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004412 - homoserine dehydrogenase
                     activity [Evidence IEA];
                     GO_function: GO:0050661 - NADP binding [Evidence IEA];
                     GO_process: GO:0006520 - amino acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine dehydrogenase"
                     /protein_id="HWM61869.1"
                     /translation="MTATFKIAIAGLGTVGSGVVKALAVRGEELSRRAGRKLEITAVS
                     ARDKNKARGYAVPGWTSDVLSLAKTDADVVVELIGGDEGIARQLVETALANGKHVVTA
                     NKALLAKHGLVLAQLAEKNGVTLKFEAAAAGGIPIVKALREGLIAQPIDAVKGILNGT
                     CNYILTEMESSGRGFAEVLKEAQACGYAEADPALDVGGGDTAHKLA"
BASE COUNT          482 a          904 c          893 g          465 t
ORIGIN      
        1 gtcgcttccg cggcgccgcc ggcacccgtt gcctccgcgc cgcttgcacc ggccccttcc
       61 gccatggctg ctccgccgcc gggcgcggaa ccggctgtgc ccgccgtgcc gatgacggcc
      121 ggtgcccgta tggccatggc caatccttcc gattcccagt tgggcttcag gccctcttcg
      181 gcgccgccgc tgaatcccgg cgtggcgcag tgggtggcgc cgccgatcct ggcccattat
      241 cgccaaaccg ctgccttgac cggctctgcc ggcaccggca tccccgccgt ggcggccgta
      301 cctgccgtct ccgggcgccg tggcgcgcgg ggcatgggcg gtcccaccag catgtccggc
      361 gatgtggtcg ccaatctcga cgccgttccc ggcagtccgg ccggcatggc tgctgccatg
      421 aatggcggca tgccgcccac agccatcatc tatttccccg gcgacggcac cagcttgccg
      481 gccgccgccc gcgcccaggt gcgtgacgcc gtggccgcct tccaggccgg cggcgggacg
      541 ggcagcgtca aggtggtggg ccatgcctcc agccggaccg ccaacatgcc ggtggaacgc
      601 catctggaag tgatcttcca aaagtcacag gcgcgcgcca atgccgtggc ccaggccctg
      661 atcaaggccg gggttccggc cgaccgggta cagatcgagg cggtgggcga cagccagccg
      721 gtctattacg aatccatgcc caagggcgaa gacggcaacc gccgggcgga aatcttcgtc
      781 caaggctgat ttgtagccag ttgggcgtgc ggccatggaa taacggtccc gcgccaaatc
      841 cgccgcaatt cacccaataa tgattgcgcc tcggtgcgaa attccggatt ctcaggcgtt
      901 ttcaggactc acgacatgaa taccgatttc tatcgcatca agcggctgcc gccctacatc
      961 ttcgaggaag tgaaccggct caaggcgcag gcgcgggcgc gcggcgagga catcatcgat
     1021 ttcgggatgg gcaaccccga catggccaca cccgactgga tcgtggacaa attgtgcgag
     1081 acggcgcgcg atccccgcgc ccatcgctat tcggcgtcgc gcggcatcaa gggcctgcgc
     1141 aaggcgcatg tcgcctatta ccagcgccgc ttcggcgtca ccctggatcc cgaccgcgaa
     1201 gtgatcgccg ccctgggctc caaagaaggc ttcgccaatc tcgccatggc gatcaccgcg
     1261 ccgggcgacg tggtgctggt gcccaatccg gcttacccga tccatgcctt cggtttcatg
     1321 atcgcgggcg ccgccattcg ccatgtcccc gccacttcgc ccgaggaata tctttcccgc
     1381 atcggcacgg cgacgcgcca ttcggtgccg tcgccgctgg cgctggtggt gaattatccc
     1441 tccaacccca cggcgcaggt ggtggatttg gatttctaca aagagatcat caaattcgcc
     1501 aagaagcacg agatctgggt gctgagcgac ctggcctatg ccgacatcta tttcggcgac
     1561 aatccgccgc cctcgatcct gcaggtggac ggcgccaagg acatcgccat cgaattccag
     1621 tccctgtcca agacctattc catgcccggt tggcgcatgg gcttcgcggc cggcaatgaa
     1681 aagctgatcg gggcgctggc gcggatcaag tcgtatctgg attacggcgc cttcacgcct
     1741 atccaggtgg ccgccgccgc cgccctgaac gggccgcaga ccgtggtgga ggaaatccgc
     1801 gccgtctaca aatcgcgccg cgacgtgctg gtgaagagca tggcggcggc gggttgggaa
     1861 attccgccgc ccgaagcctc gatgttcgcc tgggccccgg tgccggagaa gtataggagc
     1921 ctgggctcga tggaattcgc caaagacttg ctgatccatg ccaaggtggc ggtgtcgccg
     1981 ggcatcggct ttggcgaata tggcgagggc tatgtgcggg tggcattggt ggagaatgag
     2041 catcgcatcc gccaggcggc gcgcaacgtg aagaaattcc tcaccatggg caccaatata
     2101 gcgcccaagg atttggcgcc agcgaaatga ccgcaacgtt caagattgcc atcgccggtc
     2161 tcggcacggt cgggagcggc gtggtgaagg cgcttgccgt gcgcggcgag gaattgtcgc
     2221 gccgcgccgg gcgcaaattg gaaatcaccg cggtttcggc gcgcgacaag aacaaggcgc
     2281 gcggctatgc ggtccccggc tggaccagcg atgtgctgag cctggccaaa accgatgccg
     2341 atgtcgtggt cgaactgatc ggcggcgacg aaggtatcgc ccgtcagctg gtggaaaccg
     2401 cgctggccaa tggcaaacat gtggtgaccg ccaacaaggc gctgctggcc aaacatgggt
     2461 tggtgctggc ccagctggcg gagaagaatg gcgtcaccct gaaattcgag gcggcggcgg
     2521 ccggcggcat tcccatcgtc aaggcgctgc gcgaaggcct gatcgcccag ccgatcgatg
     2581 cggtgaaagg catcctcaac ggcacctgca actatatcct caccgaaatg gaaagttcgg
     2641 gccgcggctt tgccgaggtg ctgaaggaag cgcaggcatg cggctatgcc gaggccgatc
     2701 ccgccctgga tgtcggcggc ggcgatacgg cgcacaagct tgcc
//
LOCUS       DATMDK010000358         2011 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2680665,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000358 DATMDK010000000
VERSION     DATMDK010000358.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2011)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2011)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2011
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2680665"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1227)
                     /locus_tag="VNN98_06945"
     CDS             complement(<1..1227)
                     /locus_tag="VNN98_06945"
                     /inference="COORDINATES: protein motif:HMM:NF017039.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61870.1"
                     /translation="MSEMDFGIPPEAAAALGDTTPMMAQYLALKAAHTDYLLFYRMGD
                     FYELFFADAAKAAEALDIALTKRGKHQGEDIPMCGVPVHAAESYLEKLIRKGHRVAVC
                     EQVEDPAEAKKRGAKSVVRREVVRLVTPGTLTEDALLEARSSNLLTALGRSGAEFALA
                     SADMSTGEFSVTAVGQGEIATELARLSPRELLVPDSLLAQEEFASLFKALGAALSPLP
                     GSRFDSANGERALKAHYNMLSLDGLGAFNRAELSAAGALVAYLELTQKGRKVALQRIA
                     RVSPAHFMGIDAATRHNLELTQTLAGQRGGSLLAGIDRTVTASGARLLAGRLAAPLTD
                     VKQIAARHDAMEGFAKDSELRRKAREALRAAPDIARALGRLSVARGGPRDLANLRDGV
                     KAARGLRDGLQKDSLGG"
     gene            1347..>2011
                     /locus_tag="VNN98_06950"
     CDS             1347..>2011
                     /locus_tag="VNN98_06950"
                     /inference="COORDINATES: protein motif:HMM:NF012608.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="malic enzyme-like NAD(P)-binding protein"
                     /protein_id="HWM61871.1"
                     /translation="MSRPSFTDEEALAFHAGDKPGKLEITPTKPMATQRDLSLAYSPG
                     VAVPVLAIAEHPELAYDYTTKGNMVAVITNGTAILGLGDLGALASKPVMEGKSVLFKR
                     FADVNSIDLEIDTKDVEEFIAAVRYLGPTFGGINLEDIKAPDCFIIEQRLRELMDIPV
                     FHDDQHGTAIICASGIINAAHLTGRKLEELKIVVNGAGAAGIACLELIKSLGVRAENV
                     ILC"
BASE COUNT          360 a          707 c          599 g          345 t
ORIGIN      
        1 gccgcccagc gagtctttct gcaaaccatc gcgcaagcct cgcgccgcct tcaccccatc
       61 gcgcagattg gcgagatcgc gcgggccccc acgcgccacc gacaagcgcc ccagggcgcg
      121 ggcaatgtcg ggcgcggcgc gcaaggcctc gcgcgccttg cgccgcagtt cggaatcttt
      181 ggcgaaacct tccatcgcat catggcgcgc ggcgatctgc ttcacatcgg tcagcggcgc
      241 cgccagccgg cccgccaaca ggcgcgcgcc gctggcagtg acggtgcggt cgatcccggc
      301 cagcaggctg ccgccgcgtt ggcctgccaa ggtctgggtc agttccaggt tgtgccgcgt
      361 ggcggcatcg atccccataa aatgcgccgg cgacacgcgc gcaatgcgct gcagcgccac
      421 cttgcggccc ttctgggtca attccagata agccaccagc gcccccgccg ccgacagttc
      481 ggcgcggttg aacgcgccca gcccatccaa ggacagcatg ttgtagtgcg ccttcagggc
      541 gcgctcgcca ttggcggaat caaagcggct gcccggcaac ggcgacagcg ccgcgcccag
      601 cgctttgaac agcgaagcaa actcttcctg cgccagcagc gaatccggca ccagcaattc
      661 gcgcggactt aagcgcgcca gctcggtggc gatctcaccc tggcccaccg cggtcaccga
      721 gaactcgccg gtggacatat ccgccgacgc cagcgcgaac tccgctccgc tgcggcccag
      781 cgccgtcagc aggttggacg accgcgcttc cagcagtgcg tcttcggtca aggttcccgg
      841 cgtcaccagc cgcaccacct cgcgccgcac caccgatttg gcgccgcgct tcttggcctc
      901 ggcaggatct tccacctgct cgcacaccgc cacccggtgg cccttgcgga tcagtttttc
      961 cagataggac tcggcggcat gcaccggtac gccgcacatc gggatatcct cgccttggtg
     1021 tttgccgcgt ttggtcaggg cgatgtccag cgcctcggcc gcctttgctg catccgcgaa
     1081 gaaaagctcg tagaagtcgc ccatgcggta gaacagcaga tagtccgtat gcgctgcttt
     1141 taacgcgaga tattgcgcca tcatgggtgt ggtgtcgccc agcgccgccg ccgcctccgg
     1201 cggtataccg aaatccatct cgctcatgcg agcgatccta gcagagccgg acgcctcact
     1261 gcgtcacgga agcttgatgc aatcgccacc tgcgtggtta ttctgtggaa aatccttctc
     1321 cgaacgtcca ccccagcagg tatccgatgt cccgcccgtc ctttaccgac gaagaagccc
     1381 tggcattcca tgccggcgac aagcccggca agctggagat cacgcccacc aagccgatgg
     1441 cgacccagcg cgacctgagc ctggcctatt cgcccggtgt cgcggtgccg gtgctggcga
     1501 tcgcggaaca tcccgagctt gcctatgact ataccaccaa gggcaacatg gtggcggtaa
     1561 tcaccaacgg caccgccatc ctgggcctgg gcgatctggg cgcgctggct tccaaaccgg
     1621 tgatggaagg caaatcggta ctgttcaagc gctttgccga cgtcaattcc atcgacctgg
     1681 aaatcgacac caaggatgtc gaggaattca tcgccgcggt gcgctatctg gggcccacct
     1741 tcggcggcat caatttggaa gacatcaagg cgcccgactg tttcatcatc gagcagcggc
     1801 tgcgcgagct gatggacatt ccggtgttcc atgacgacca gcacggcacc gccatcatct
     1861 gcgcctccgg catcatcaat gccgcgcacc tgaccgggcg caagctggaa gaattgaaga
     1921 tcgtggtgaa cggcgcgggc gccgccggca tcgcctgcct ggaactgatc aagtccctgg
     1981 gcgtgcgcgc cgagaacgtt attctctgcg a
//
LOCUS       DATMDK010000359         4852 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_642803,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000359 DATMDK010000000
VERSION     DATMDK010000359.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 4852)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4852)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4852
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_642803"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..229
                     /locus_tag="VNN98_06955"
     CDS             <1..229
                     /locus_tag="VNN98_06955"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61872.1"
                     /translation="PRRDRRNPAPMGCFLRLPLINRMPAYAHSGHSPPSDQILHAPNC
                     RPWNKGQLKSTVRYLGIEVDDALSLSEQVDI"
     gene            267..1268
                     /locus_tag="VNN98_06960"
     CDS             267..1268
                     /locus_tag="VNN98_06960"
                     /inference="COORDINATES: protein motif:HMM:NF013098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HWM61873.1"
                     /translation="MKNGALFAAFLIVCWQHADAQNQAAPLLAPKFHHLQLNSADPGA
                     AIAFYLKEFPSTSKAVWEGMPALASPNNVLIVFNKITSAPDADPNVTAYWHFGWSVTD
                     SRKSLDMFRAQNLLVPFYTDDQGNFVGISSDTYPYPPGVPGRTRAQLAEANAQNLQPT
                     HIAGNGYILGPDRAIIEFTGNAPAERLDHVHIWQDDPVCAELWYVKHLNAAPRRRRAE
                     ASPPPTEANCKLPREPEPSWPSLTKQGTYRSPTGGVSFGDVAMNWYPNQGDRPLAPSP
                     GHLIDHVGLSVLDLNAWIDKLRSEGVTFLRQPYKIGDARAVMIEGPSHEAIELVEVK"
     gene            complement(1444..3570)
                     /locus_tag="VNN98_06965"
     CDS             complement(1444..3570)
                     /locus_tag="VNN98_06965"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HWM61874.1"
                     /translation="MTDEISPQGEPADSVFAGRIDILYALGRHYLSLPFAVLCVPATL
                     MAGHAPSILPVIPLLLQMTVVIAAEQLTTAYKKRSPGSDPHFWARRYTFVSAISGATW
                     GVASLFWFVWDSFPAQAYLSLAFLGMAATEFIARSAHRPAYLAHTLFALGPLVGLLLW
                     QGGIYADCTAVLIVLFTAVLISYCRGMARLLDESVYLRNENGELVIRLQREKSEALSA
                     RDAAEASAMAKTAFIANISHELRTPLNALLGMAQLLERAELPKQQGDHVKVMLQAGLG
                     LQTLIDDVIALTRDDSDQLEDEDCDPLQAARAVARLLQPRAWEKRLHLTLSAASGLPR
                     VAADPRKVRQVLLKLTDNGLKFTERGLVDIRLDVTEDGQAVRFCISDTGHGVAPEAAH
                     LLFNAFSPGDSSYARKQQGAGLGLAVAKRVVEQAGGSIGFSSKPGEGAQFFFTLPISG
                     AMPGAASQHSEGEGLHAPPAGLSLLIFLRPPMADTTARLLEPFGNRVVQTGSMAEAVE
                     RAGKEHFDAVITGAGDADMLAAAPGMKAPLIAMLLRGDRAPAATDTVLRWPVEADQLY
                     RALGEICEPPLEGGTEAAEIQAAIDPVAFSTLEKSVGIKTLVEILQCYIVTAEQLTDA
                     LAEASAEERWDDAARLAQDIVGAAGALGLAAITRAARDFARIAREGEDRLDGERRHAL
                     RNAAQIVVGEHVRARLALSRLYPEVA"
     gene            3651..>4852
                     /locus_tag="VNN98_06970"
     CDS             3651..>4852
                     /locus_tag="VNN98_06970"
                     /EC_number="6.1.1.6"
                     /inference="COORDINATES: protein motif:HMM:NF001968.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000049 - tRNA binding [Evidence IEA];
                     GO_function: GO:0004824 - lysine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006430 - lysyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lysine--tRNA ligase"
                     /protein_id="HWM61875.1"
                     /translation="MNATTELALAAKAWPFEEARKLLARVQSRKKAGQTVDFVLFETG
                     YGPSGLPHIGTFGEVARTSWVRHAFETMSDIPTHLIAFSDDMDGLRKVPDNLPQPQML
                     AANLGKPLTSIPDPFGSHKSFGHHMNARLRAFLDRFDFRYEFYSSTATYKSGRFDAAL
                     LRILANYDKVMAVMLPTLGEERQQTYSPFLPISPRSGKVLLAKVVAHDVAKGTITYVE
                     EDGSQETVPVTGGHCKLQWKPDMGMRWAALGVDYEMYGKDHLSQAPLYDAICKIAGGV
                     PPQQFMFEMFLDESGQKISKSKGNGISLDDWLIYGSPESLALFMFQKPRAAKKLHFDV
                     IPKAVDEYIAFLDAYHAAETTDAQRLENPVWHIHGGKVPDERYPVSFALLLNLVSASN
                     AHNRDVLWG"
BASE COUNT          948 a         1518 c         1481 g          905 t
ORIGIN      
        1 cccacggcgc gacaggcgca atccggctcc gatgggctgt tttctgcgtc tgccattgat
       61 caatcgcatg cccgcttatg cgcatagcgg acattcgccg ccctccgatc agatattgca
      121 cgcccccaat tgccgtccgt ggaataaggg acagctaaaa agcaccgttc gctatctggg
      181 gattgaggtt gacgatgctc tcagtttgtc cgagcaggtg gacatctgat aacaacggac
      241 gggacaaatt agagggaaat gcgaaaatga aaaatggcgc attgtttgca gcattcctga
      301 ttgtttgctg gcaacatgcc gatgctcaga accaggcggc accgctgttg gcgccgaaat
      361 ttcatcatct acagctgaac agtgccgatc ccggcgcggc gattgctttc tatttgaagg
      421 aatttccctc gacctcaaag gccgtctggg aaggcatgcc ggcgctggct tcacccaaca
      481 atgttctgat tgtcttcaac aagatcacgt cggcacctga tgctgatccg aatgtaaccg
      541 catactggca tttcggatgg agcgtgaccg attcccgcaa gagtctcgac atgttccggg
      601 cgcaaaattt gctagtaccg ttctacacgg acgaccaggg taattttgtc ggcattagca
      661 gcgataccta tccctatccc cccggcgtgc cgggccgcac aagggcgcaa ctcgccgagg
      721 ccaacgcgca aaacctccag ccaacgcaca tcgcgggcaa tggctatatc ctgggccccg
      781 accgcgcgat catcgaattc accggcaacg caccagccga gcgtctcgac catgtgcata
      841 tctggcagga cgatcccgtc tgcgccgaac tttggtacgt gaagcacctg aacgccgcac
      901 cgcgccgccg gcgggccgag gcgagcccgc caccgacgga agcaaactgc aagcttccgc
      961 gtgagcctga accgtcatgg ccatcactga ccaagcaagg cacctatcgc agccctactg
     1021 gtggcgtaag tttcggtgat gtggcgatga attggtatcc aaaccagggc gaccggccgc
     1081 tggccccctc gcctggccat ctgatagatc atgtggggct cagcgtgctt gatctcaatg
     1141 cctggatcga caagctcaga agcgaaggcg tcaccttcct gcgacaaccc tacaagatcg
     1201 gcgatgcacg cgcggtgatg atcgaaggtc ctagtcatga ggccattgag ctggtcgaag
     1261 tgaaatagct tttgaaagac gccttatccg cctgccaatt ctatccatgc tctggagcca
     1321 atgtccgcta tgcgcggtgg cctccacccg ttgagaccac cgcgcatagc ggacattggc
     1381 tccagagcgc caaacagaat tacatcctgg tcgcctagcg cagtggcgac ctcggtcgcg
     1441 ggactaagcc acttcgggat aaagccggct cagtgccagg cgggcgcgaa catgttcacc
     1501 caccacgatc tgggcggcgt tgcgaagcgc atggcgtctt tcgccatcga gacggtcttc
     1561 gccttcgcgc gcgatgcggg caaagtcgcg tgccgcccgg gtgatcgccg ccaggcccag
     1621 cgcccccgcc gcgccgacga tgtcctgcgc cagccgcgcc gcgtcgtccc atctctcctc
     1681 ggcgctggcc tctgccagcg cgtcggtcag ttgctcggca gtgacgatgt agcattgcag
     1741 gatttccacc agggttttta tccccaccga cttttccagg gtgctgaagg ccaccgggtc
     1801 gatggcggct tgtatctccg cagcttccgt cccgccttcg agcggcggct cgcagatttc
     1861 gcccagggcg cggtagagct gatcggcttc caccggccag cgcaacactg tgtcggtggc
     1921 ggcgggcgcg cggtcaccgc gcagcagcat cgcgatcagc ggcgctttca tccctggcgc
     1981 ggcggccagc atgtcggcgt cgccggcgcc ggtgatgacg gcatcgaaat gttccttgcc
     2041 ggcccgctct accgcttcgg ccatgctacc cgtctgcacc acgcgattgc cgaacggttc
     2101 cagcaggcgg gcggtggtgt cggccatcgg aggacgcagg aagatcagca gcgacaggcc
     2161 ggcaggcggc gcatgcaggc cttcgccctc gctgtgctgg ctggcggcgc ccggcatcgc
     2221 gccggatatt ggcaaggtga aaaagaattg agcgccttcg ccgggcttgc tggaaaagcc
     2281 gatgctgccg cccgcttgtt cgacgactcg cttggccacc gccaggccca ggcccgcgcc
     2341 ctgttgcttg cgggcatagg atgaatcgcc gggcgaaaag gcattgaaca gaagatgcgc
     2401 tgcttccggc gccacgccat ggccggtatc ggagatgcaa aaacgaacgg cctggccgtc
     2461 ctcggttacg tccagacgga tgtccaccag cccgcgctcg gtgaatttca gcccattgtc
     2521 ggtgagcttg agcagaacct ggcgcacctt gcgcgggtcc gccgctacgc gtggcaggcc
     2581 ggaggcggcg ctcaaggtca gatgcaggcg cttttcccag gcgcggggct gcagcagccg
     2641 cgccacggcg cgcgccgcct gcaggggatc gcaatcctca tcttccagct ggtcggaatc
     2701 gtcgcgggtc agcgctatga cgtcgtcgat caaggtctgc aggccaaggc cggcttgcaa
     2761 catcactttg acatggtcac cctgctgctt gggcagctcg gcgcgctcca gaagctgcgc
     2821 cattcctagc agcgcgttca gtggcgtacg cagctcatgg gagatattgg cgatgaaggc
     2881 ggtcttggcc atggcgctgg cttcggcggc atcgcgggcg ctgagggctt cgctcttttc
     2941 gcgctgtagc cggatcacca gctcgccatt ctcattgcgc aaatacacac tttcatccag
     3001 caggcgcgcc atgccccggc agtagctgat cagcactgcg gtaaacaaca cgatcagcac
     3061 cgcggtgcag tcggcgtaaa tcccgccctg ccataagagc agcccgacca gcggtcccag
     3121 cgcgaacagg gtgtgcgcca gataagccgg acggtgggcc gagcgggcga tgaactccgt
     3181 ggctgccatc cccaggaagg cgaggctgag ataggcttgg gcggggaagg aatcccacac
     3241 aaaccagaac agcgaggcca cgccccaagt ggcgccggaa atggccgaga cgaaggtgta
     3301 gcgccgcgcc cagaaatgcg ggtcgctgcc ggggctgcgt ttcttgtagg cggtggtaag
     3361 ttgttcagcc gcgatcacca cggtcatctg caacagcaat ggtatcaccg gcaggatgct
     3421 gggcgcatgg cccgccatca gggtggcggg aacgcataag acggcgaagg gaagggagag
     3481 gtagtggcgg ccgagtgcgt acaggatatc gatgcggccg gcgaacaccg aatccgcagg
     3541 ttctccctgt ggcgagattt cgtcagtcat tgcgcaaatc cttgccaaag cttagctttc
     3601 gcgccctttc aaaacgctta aaccgatctt aacgaaggat gaacttcccc ttgaacgcga
     3661 cgaccgaact ggcgcttgcc gccaaggcct ggcccttcga ggaggcccgc aagctgctgg
     3721 cgcgcgtgca aagccgcaaa aaagcggggc agacagtgga tttcgtgctg ttcgagaccg
     3781 gctatggccc gtcaggcctg ccccatatcg ggacgttcgg ggaggtcgcc cgcaccagct
     3841 gggtgcgcca tgccttcgag accatgtccg acattcccac ccacctgatc gccttttccg
     3901 acgacatgga tggtttgcgc aaggtgcccg acaacctgcc ccaacctcag atgctggcgg
     3961 ccaatctggg caagccgctc acgtcgattc ccgatccctt cggcagccat aaaagcttcg
     4021 gccatcacat gaatgcgcgg ctgcgcgcct tcctggaccg gttcgatttt cgctatgaat
     4081 tctattcctc caccgccacc tacaagtcgg gccgcttcga cgcggccttg ctgcggattc
     4141 tggccaacta cgacaaggtg atggcggtga tgctgccgac tttgggcgag gagcggcaac
     4201 agacctattc gcccttcctc cccatcagtc cgcgctccgg caaggtgctg ctggccaaag
     4261 ttgtggcgca tgacgttgcc aagggcacca tcacctatgt cgaggaagac ggcagccagg
     4321 aaaccgtgcc agtgaccggc gggcactgca agctgcaatg gaagcccgat atggggatgc
     4381 gctgggcggc gctgggcgtg gattatgaga tgtacggcaa ggaccatctc tcccaggcgc
     4441 cattgtatga cgccatctgc aaaatcgcgg gcggggtgcc gccgcagcaa ttcatgttcg
     4501 agatgttcct ggatgagagc ggccagaaaa tttccaagtc caaaggcaac ggcatcagcc
     4561 tggatgactg gctgatctat ggttcgcccg aaagcctggc gctgttcatg ttccagaagc
     4621 cgcgcgccgc caagaagctg cacttcgacg tgatccccaa ggcggtggac gagtatatcg
     4681 ctttcctgga tgcctatcac gccgcggaaa caactgacgc gcaacggttg gaaaatcccg
     4741 tctggcacat tcatggcggc aaggtgcccg atgagcgcta tccggtcagc ttcgccttgc
     4801 tgctcaattt ggtgtcggcc tccaacgcgc ataatcgcga cgtgctgtgg gg
//
LOCUS       DATMDK010000360         3986 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_157164,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000360 DATMDK010000000
VERSION     DATMDK010000360.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3986)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3986)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3986
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_157164"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2159)
                     /gene="infB"
                     /locus_tag="VNN98_06975"
     CDS             complement(<1..2159)
                     /gene="infB"
                     /locus_tag="VNN98_06975"
                     /inference="COORDINATES: protein motif:HMM:TIGR00487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003743 - translation initiation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006413 - translational initiation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-2"
                     /protein_id="HWM61876.1"
                     /translation="MSDTDETKRPAKTLSLKKTETSTVKQSFSHGRTKAVVVEKKRSA
                     GPPAPAPKPVKAVEKPAEKPAAKAPEAKAPAAAAPARGVVLRQLSDEEKSRRAAALAD
                     ARVSDSEARRIAENEARRRSVEEEQLKLERAAAEKRKAEEEARKIADDIAKKRAEQEA
                     ARRFEAPKTPAELAASGEAPRRRLENEEEEEGGAKKIGGKLVPAKAPAPKKVPEGERR
                     RGKLTVTRALSDDDERVRSVASYKRHLQRVNKGHQQQPAGPAGPRDIIVPETITVADL
                     ANRMARRTVDVIKVLMKNGMMATPNDIIDADTAELVAAEYGHVVKRVAESDVLEGLAG
                     ETDDEANLVPRPPVVTIMGHVDHGKTSLLDALRKTDVVSGEAGGITQHIGAYQVNLKS
                     GQKITFLDTPGHAAFTQMRARGAKVTDLVILVVAADDGVMPQTVEAIAHAKAAGVPMI
                     VAVNKVDKGDANPTRVKTELLQHEIQVEDMGGQTQAVEVSATKGIGLDKLEEAILLQA
                     EILDLKANPDRPAEGAVVEAKLDKGRGPVATVLVQRGTLKVGDIVVAGAEWGRVRLLA
                     NERGESVKSAGPSTPIEVLGLSAPPEAGDEMVVVENEARAREVAEYRGRKRREQRQAS
                     SSRQTLDQLLQTREAGEKRLLPLVLKADVQGSSEAIQGALAKLATAEVGAQILQSGVG
                     GITESDVILAHASGAAVIGFNVRANNQARDRAKRDGV"
     gene            complement(2156..2821)
                     /locus_tag="VNN98_06980"
     CDS             complement(2156..2821)
                     /locus_tag="VNN98_06980"
                     /inference="COORDINATES: protein motif:HMM:NF006622.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding protein"
                     /protein_id="HWM61877.1"
                     /translation="MIVVAKELDETDELRERRDIVSGEVLPESRLMRFVADPDGHVVP
                     DAAAKLPGRGLWVEASKAAIDKAVEKKLFSRAAKAQVTATADLAERAEKALVTRMLGD
                     LGIARRAGSLLLGFDNVLRGLQGPKPPKLLIEAFDGSSDGKRKLYAAAHRLELGCVVI
                     ESLTSAELGLALGRENVIHAAVQPGGLAERLTFDAERLSGFRQKNLARNERADASLKE
                     SKS"
     gene            complement(2821..>3986)
                     /gene="nusA"
                     /locus_tag="VNN98_06985"
     CDS             complement(2821..>3986)
                     /gene="nusA"
                     /locus_tag="VNN98_06985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003042722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006353 - DNA-templated transcription
                     termination [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="transcription termination factor NusA"
                     /protein_id="HWM61878.1"
                     /translation="SEFGSVVVDLGKAEGVVRRDEMIPRESFRAGDRIRAYIYDVRRE
                     ARGPQIFLSRSHPQFMVRLFAQEVPEIYDGVIEIRAVARDPGSRAKIAVISKDSSIDP
                     VGACVGMRGVRVQAVVQELQGERIDIIPWNSEAATFIVNALAPAEVTKVVLDEDTHRV
                     EVVVPDEQLSLGIGRRGQNVRLASQLTGWQIDILTEAEESERRQKEFTQRTALFMESL
                     DVDETVAQLLASEGFASIEDVAYVDLGELAQIEAFDEETAQELQNRAIEFIEARNKEL
                     DDKRLALGVTDDVLEVDGITSAMAVALGEHEIKSLEDLAGCATDDLIGYYEVNKDKER
                     VRVPGALDGFNLTSDDANAIVMKARVKIGWIEEEPEMVEEEIADEGETENSKA"
BASE COUNT          562 a         1350 c         1271 g          803 t
ORIGIN      
        1 tcaacgccat cgcgcttggc gcggtcacgc gcctgattgt tggcacgcac gttaaagccg
       61 atcaccgccg ccccactggc atgggccagg atgacgtcgc tttcggtaat gccgccgacg
      121 ccggactgca ggatctgcgc cccgacttcg gccgtggcca gcttggccag cgcgccttgg
      181 atggcttcgc tggaaccctg cacatcggcc ttgagcacca gcggcaacag gcgcttttcg
      241 ccggcttcgc gggtttgcaa caactggtcc agagtctggc gcgaagacga ggcctggcgc
      301 tgttcgcggc gtttgcggcc gcgatattcc gccacttcgc gggcgcgggc ttcgttttcc
      361 accacgacca tctcgtcgcc cgcttcggga ggagcggaca ggcccagcac ttcgatgggg
      421 gtggagggac cggcgctttt caccgactcg ccgcgttcgt tggccagcag gcgcacccgg
      481 ccccattcgg cgccagccac cacgatgtcg ccgaccttca gggtgccgcg ctgcaccagc
      541 acggtggcga cggggccgcg gcccttatcc agcttggctt ccaccaccgc gccttcggcg
      601 gggcggtcgg gattggcctt gaggtccagg atttcagcct gcagcaggat ggcttcttcc
      661 agcttgtcca ggccgatgcc cttggtggcg gagacttcca ccgcctgggt ttggccaccc
      721 atatcctcga cctggatttc atgttgcagc agttcggtct tcacgcgggt ggggttggcg
      781 tcgcccttgt cgaccttatt gaccgccacg atcatcggca caccggccgc cttggcatgg
      841 gcgatggctt ccaccgtctg gggcatcacg ccgtcatcgg ccgccaccac caggatcacc
      901 agatcggtga ccttggcgcc gcgcgcgcgc atctgggtga aggcggcatg gcccggcgtg
      961 tccaggaagg tgatcttctg gcccgatttc aggttcacct gataggcgcc gatatgctgg
     1021 gtgatgccgc cggcctcgcc cgacaccacg tcggtcttgc gcaaggcgtc gagcagcgaa
     1081 gtcttgccgt gatcgacatg gcccatgatg gtgaccaccg gcggccgcgg caccaggttg
     1141 gcctcgtcgt ccgtctcgcc agccaggcct tccagcacgt cgctttccgc cacgcgcttg
     1201 acgacgtggc catattcggc cgccaccagc tcggcggtgt cggcatcgat gatgtcattg
     1261 ggcgtcgcca tcatgccgtt cttcatcagc accttgatga cgtccacggt gcggcgggcc
     1321 atgcggttgg ccagatcggc aaccgtgatg gtttccggca cgatgatgtc gcgcgggccg
     1381 gcggggccgg cgggctgctg ctgatggcct ttgttgacgc gctgcagatg gcgcttgtag
     1441 gaggcgaccg aacgcacgcg ctcatcatcg tcggacaaag cgcgggtgac ggtcagcttg
     1501 ccgcggcggc gttcgccttc gggaaccttc ttgggggcgg gcgccttggc gggcaccagc
     1561 ttgccgccga tcttcttggc gccgccttct tcttcttctt cgttctccag gcggcggcgc
     1621 ggcgcttcgc cggaggcggc cagttcggct ggggtcttgg gcgcttcaaa gcggcgggca
     1681 gcttcctgct cggcccgctt cttggcgatg tcgtccgcaa tcttgcgggc ttcttcttct
     1741 gccttgcgct tttcggcagc ggcgcgctcg agcttaagct gttcttcttc cacggagcgg
     1801 cggcgggcct cgttctcggc gatgcggcgg gcctcgctgt cggaaacccg ggcatctgcc
     1861 agggcggcgg cgcggcgcga cttttcctcg tccgaaagct ggcgcagcac cacgccgcgg
     1921 gccggcgcgg cggcggcggg cgccttggct tccggcgcct tggccgcggg cttttcggct
     1981 ggcttctcga ccgccttgac gggcttgggt gcaggcgcgg gcggcccggc ggagcgcttc
     2041 ttctccacca ccacggcctt ggtgcggcca tggctgaagc tttgcttgac ggtggaagtt
     2101 tccgtcttct tcagcgacag cgttttcgcc gggcgcttgg tttcgtcagt atcgctcatg
     2161 acttactttc ttttaagctc gcgtccgctc gctcgttccg tgccagattt ttttgccgga
     2221 agcccgaaag gcgttccgca tcaaaggtca aacgttcggc aagaccaccc ggctggacgg
     2281 cggcatgtat cacattctcg cgtcccagcg ccaagcccaa ttcggcgctg gtcaggcttt
     2341 cgatcaccac gcagcccagc tccagccggt gcgccgcggc atataatttg cgcttgccgt
     2401 cggaggaacc gtcaaaggcc tcgatcagca gcttgggcgg cttggggccc tgcaatcccc
     2461 gcagcacatt gtcgaagccc agcagcaggc tgccggcgcg ccgcgcaatc cccaaatcgc
     2521 ccagcatccg ggtgaccaga gctttttcgg cacgttccgc cagatcggca gtggccgtga
     2581 cctgcgcctt ggcggcgcgg gagaagagtt tcttctccac cgccttgtcg atggcggcct
     2641 tggaggcctc cacccacaag ccccggcccg gcagcttggc cgccgcgtcg ggaaccacat
     2701 ggccatcggg atcggcgaca aaccgcatga ggcggctctc gggcaaaacc tcgcccgata
     2761 cgatgtcgcg gcgctcccgc aactcgtccg tctcatccag ctctttcgcc acgacgatca
     2821 tcaagctttg ctgttctccg tttcgccttc atcggcgatt tcttcttcga ccatttccgg
     2881 ctcttcctcg atccagccaa tcttgacccg cgccttcatc acaatggcgt tggcgtcgtc
     2941 gctggtgaga ttgaagccgt ccagggcgcc gggaacgcgc acgcgttcct tgtccttgtt
     3001 gacctcgtaa tagccgatca ggtcgtcggt ggcgcagccg gccaggtctt ccagactctt
     3061 gatctcgtgc tcgcccagcg ccaccgccat ggcggaggtg atgccgtcca cttccagcac
     3121 gtcatcggtg acgcccagcg ccaggcgctt gtcgtccagt tccttgttgc gggcttcgat
     3181 gaattcgatg gcgcggttct gcagttcctg cgcggtctcc tcgtcaaagg cctcgatctg
     3241 cgccagctcg cccagatcga cataggccac gtcctcgatg ctggcgaagc cttcggacgc
     3301 cagcagctgg gccacggttt cgtccacgtc cagcgattcc atgaacaagg cggtgcgctg
     3361 ggtgaattcc ttctggcggc gttcggattc ctcggcttcg gtcagaatgt cgatctgcca
     3421 gccggtcagc tgcgaggcca ggcggacatt ctggccgcgg cggccgatgc ccaggctgag
     3481 ctgctcgtcc ggcaccacca cttcgacgcg gtgggtgtct tcgtccagca ccaccttggt
     3541 gacttcggcg ggggccagcg cgttgacgat gaaggtcgcc gcttcgctgt tccacggaat
     3601 gatgtcgatg cgctcgcctt gcagttcctg caccaccgcc tgcacgcgca cgccgcgcat
     3661 gccgacgcag gcgccgaccg gatcaatcga gctatccttg ctgatgacgg cgatcttggc
     3721 gcgggagccg ggatcgcgcg ccacggcgcg gatctcgatc acgccgtcat agatttccgg
     3781 cacttcctgg gcgaacagcc gcaccatgaa ctgggggtgc gaacgcgaca ggaaaatctg
     3841 cggcccgcgg gcttcgcggc gcacatcgta gatataggca cggatgcggt caccggcgcg
     3901 gaaagactcg cgcgggatca tctcgtcgcg gcgcaccacg ccttcggcct tgcccagatc
     3961 gaccacgacg gagccgaact cagagc
//
LOCUS       DATMDK010000361         2618 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2004694,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000361 DATMDK010000000
VERSION     DATMDK010000361.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2618)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2618)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2618
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2004694"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1496
                     /locus_tag="VNN98_06990"
     CDS             <1..1496
                     /locus_tag="VNN98_06990"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015267 - channel activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HWM61879.1"
                     /translation="EHQVEDTDTLKLAYDFANQWQLAYVASLFHMDDDAGVRTYLRDG
                     SGNPIYAGNNNIGGYNYNIAASTFSSQVYNYQQTQLAQGLSLTSAKDGDFAWELLASD
                     YTYLNDKQRVPTAVLPAAFTSGAGTINRMNGTGWYTLDANGVWRGWTDHELSFGAHRD
                     AEIYAQTRNNLTDWIAGGLGTVVNAARGRTATNAAWVQDIWTLFPDLKASAGLRYEDW
                     RAYAGANFSAAPALNVVQPRISASTLSPKASLAWQMSDAWRLTGSWGVAYRMPTVTEL
                     YQAITTGTTLTVPNPNLKPERASSYELAAEHRTDHGFVRLSYFEEDITSALLSQSAPL
                     VAGSATLFSFVQNVDRTQVRGVEFVVDQYDAFIPGLELMGNITAADGRIRRDNAFAAA
                     VGKFIPGVPKLKANAVATYRPDDKWSFTLGARYSDRTFGTIDNSDPISQTYQGFARYL
                     VVDTRARYKIDESWNVSVGVDNLNNDKYFLFHPFPQRTFVMEIHYAQ"
     gene            1517..2071
                     /locus_tag="VNN98_06995"
     CDS             1517..2071
                     /locus_tag="VNN98_06995"
                     /inference="COORDINATES: protein motif:HMM:NF014689.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="manganese efflux pump MntP family protein"
                     /protein_id="HWM61880.1"
                     /translation="MTFLPILLLALSMSCDAFAAALGKGARLDRPGLGEALRTGLIFG
                     GIEAITPVIGWVLGRGASRYIQAFDHWIAFGLLAVIGGKMIWDSLWRSGAEEKPQRHT
                     FTALAVTAVGTSIDALAVGVTLALVGANIIVNALAIGAATFVMVTIGVMTGRYLGEKL
                     GRYAEAAGGVILLVIGIKILLEHA"
     gene            complement(2075..>2618)
                     /locus_tag="VNN98_07000"
     CDS             complement(2075..>2618)
                     /locus_tag="VNN98_07000"
                     /inference="COORDINATES: protein motif:HMM:NF012655.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="TetR family transcriptional regulator"
                     /protein_id="HWM61881.1"
                     /translation="AESRSAILDAARRVAARDGARDLSLRGVAAEAGFAPAALYGYFR
                     NKDELLLALAADDLTSLARAMRGTGGLAGAGAAALALLSGAETMAAASAALTGAPQEN
                     NKIGDAERLFNGRLIAALRALSDASGLPSDSRQSQCDVVLVAAALAGLALLARSGRLE
                     ALGFTSDEMIARLDGRFRSA"
BASE COUNT          480 a          847 c          811 g          480 t
ORIGIN      
        1 ttgagcatca ggtggaggac accgacacgc tgaagctggc ttatgatttc gccaatcaat
       61 ggcaactggc ctatgtcgcc agcctgttcc acatggacga cgatgcgggc gtgcgaacct
      121 atctgcgcga tggatcgggc aatccgatct atgccggcaa taacaatatc ggcggctaca
      181 actacaacat cgccgccagc accttttcca gccaggttta caactaccag cagacccagc
      241 tggctcaggg cctgtcgtta acatcggcaa aggatgggga tttcgcctgg gagcttcttg
      301 ccagcgacta tacctatctc aacgacaagc agcgcgtgcc gaccgccgtc ctgccggccg
      361 ccttcaccag tggcgccggc acaatcaatc gcatgaatgg caccggctgg tatacgctgg
      421 atgccaatgg cgtatggcgc ggctggacgg accatgaatt gtctttcggc gctcatcgcg
      481 atgccgaaat ttatgcccag acccgcaaca acctcaccga ctggatcgcg ggcggcctgg
      541 gcaccgtggt caatgcggcc aggggccgga cagcgaccaa cgctgcgtgg gtgcaagata
      601 tctggacgtt gtttcctgat ctgaaagcgt cagcgggttt acgttatgag gactggcggg
      661 cctatgccgg agcaaacttc tccgccgcgc ccgcgctcaa tgtcgtccag ccgcgcatct
      721 ccgccagcac gctgtcgccc aaggcatcgt tggcgtggca gatgtccgat gcttggcgcc
      781 tgaccggctc ctggggtgtg gcctatcgca tgccgaccgt gaccgaactc taccaggcga
      841 tcaccaccgg cacgaccctg acggttccca atcccaacct gaaaccggag cgcgccagtt
      901 cctacgaact ggctgcagaa cacaggactg atcacggttt tgtgcgcctg tcctacttcg
      961 aggaggacat taccagcgcg ctgctgtcgc aatcggcgcc gctggtggcc ggttccgcca
     1021 ccctgttcag ctttgtgcag aatgtagata gaacccaggt gcgcggcgtc gagttcgtcg
     1081 ttgaccaata cgacgccttt attccaggcc ttgaactcat gggaaacatt accgcagcgg
     1141 atggccgcat ccgccgggat aacgcttttg cggcggcggt cggcaagttc atcccaggcg
     1201 ttcccaagct aaaagcaaat gccgtggcaa cttaccgtcc ggacgacaaa tggtcgttta
     1261 cgttgggggc gcgctacagt gaccgcactt tcggcacaat tgataacagc gatcccatct
     1321 cccagacgta ccagggcttc gccaggtatt tggtggtgga tacgcgggca cgatacaaga
     1381 ttgacgagag ctggaacgtc tcggttggcg tggacaatct caataacgac aagtatttcc
     1441 tcttccatcc cttcccgcag cgcacctttg tgatggaaat ccattatgcg cagtaagatg
     1501 cttgcctgaa ccacccatga cctttcttcc catcctgctg ctggccctca gcatgtcgtg
     1561 cgatgccttc gcggccgcgc ttggcaaggg cgcgcggctg gaccgtcccg gcctgggcga
     1621 ggcgcttcgc accgggttga tcttcggcgg catcgaggcg atcacgccgg tgatcggttg
     1681 ggtgctgggg cgcggcgcca gccgctatat ccaggccttc gatcactgga tcgccttcgg
     1741 gttgctggcc gtcatcggcg gcaaaatgat ctgggacagc ctgtggcgct ccggggcgga
     1801 ggaaaaaccc caacggcaca ccttcaccgc cctggccgtg actgccgtcg gcaccagcat
     1861 cgatgcgctg gcggtgggcg tgaccctggc gctggtgggc gccaacatca tcgtcaatgc
     1921 cctggcgatc ggggcggcga ccttcgtcat ggtcaccatc ggcgtgatga cgggccgcta
     1981 tctgggagaa aagctcggac gctatgcgga ggccgcaggc ggcgtgatcc tgctcgtgat
     2041 cggcatcaag atcttgctgg aacacgcctg agcatcaggc ggagcggaaa cggccgtcca
     2101 gccgcgcgat catctcgtcc gaggtgaagc ccagcgcttc cagccggccc gaccgcgcca
     2161 gcagcgccag ccccgccagg gcggcggcca ccagcaccac gtcgcactgg ctctggcggc
     2221 tgtcggacgg aaggccgctg gcgtcggaca aggccctgag cgccgcgatc agccggccgt
     2281 tgaacagccg ttcggcatcg ccgatcttat tattttcttg gggtgcgccg gtaagcgcgg
     2341 cggaggccgc cgccatggtc tcggccccgc tgagcagcgc cagggccgcg gcgcccgcac
     2401 cggcaagccc gccggtgccg cgcatggcgc gcgccaagct ggtgagatcg tcggccgcca
     2461 gcgccagcag caattcatcc ttgttgcgga aatagccgta gagcgcggcc ggggcaaagc
     2521 cggcttccgc cgccacgccg cgcaggctga ggtcacgcgc gccgtcacgc gccgccaccc
     2581 ggcgtgctgc gtcaagaatg gcgctgcgcg actccgct
//
LOCUS       DATMDK010000362         2563 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_646257,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000362 DATMDK010000000
VERSION     DATMDK010000362.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2563)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2563)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2563
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_646257"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(47..>2563)
                     /gene="ppc"
                     /locus_tag="VNN98_07005"
     CDS             complement(47..>2563)
                     /gene="ppc"
                     /locus_tag="VNN98_07005"
                     /EC_number="4.1.1.31"
                     /inference="COORDINATES: protein motif:HMM:NF000584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008964 - phosphoenolpyruvate carboxylase
                     activity [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA];
                     GO_process: GO:0015977 - carbon fixation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate carboxylase"
                     /protein_id="HWM61882.1"
                     /translation="GEIALDRLRSLSQPEMLLLIRAFSIFSQLANIADDYIARRETKA
                     LGSGAAQRLELHPGLTPKRVRAYLKDALFVPVITAHPTEVRRKSILDRENELSELLER
                     REMASLQTAERDEIDVQLKRAIRVLWQTRMLRDNRITVQDEIENNLAIFARTFLPGLP
                     LVKRRLARLFKLDGEMMPYLKSGSWVGGDRDGNPNVSPETLDYAVRRQGEIVLDYYLG
                     EIHALGAELSLSDSLIATSSALKTLAARDNQVSVHQGDEPYRRALVTCYARMAATRSR
                     LLGAEPVRRARFKAEPYAAPEDFAADLDIIAASLAENGDGDLAEGRLLNLREAVGAFG
                     FHLATMDVRQNSDVHERAVAELLKTAGATDNYLALDEAARTTLLLGELAHARPLRSPY
                     TGYSAETARELAIADRAAALKKNFGEGAVAQYVISKAATPSDLLETGLLMKEAGLFLP
                     GDKPHARLRIVPLFETIEDLRQSAAVMGTYFDAPLARAMIAAQGNLQEVMIGYSDSNK
                     DGGYVTSNWEIYSGIARLVALGKARGIRMRFFHGRGGAVGRGGGSSFDAIRALPAEAS
                     AHGIRITEQGEVVASKYGDPEIGQASLETIVAAALLAELSPQDDAVDHDGGALLAQLS
                     DTAFQAYRGLVYETTGFETYFRQATPLLEIADLKIGSRPASRTKSPKIEDLRAIPWVF
                     SWSQARVMLPGWFGFGTAAAAVGVAQLAPLYKKSAFFRTMLANMEMVLAKSSLPIARR
                     YSELVEDRAFALDVMARIEAEWHLTRDAVLAISGQPDLLAQNPRLMESIRNRLPYVDA
                     LNHLQVDLLRRRREGDAGGDIHAGIHMSINGVAAGLRNSG"
BASE COUNT          451 a          833 c          828 g          451 t
ORIGIN      
        1 gcagggcggc cccgatccaa aattgtttca tggcgtttcc ttattatcag ccgctgttac
       61 ggaggcctgc cgcgacgccg ttgatggaca tgtgaatacc ggcatggatg tcgccgccgg
      121 catcgccctc gcgccgccgc cgcagcaaat ccacctgcag atgattgagc gcatccacat
      181 aaggcaggcg gtttcgaatc gattccatca gccgcggatt ttgcgccagc aagtccggct
      241 ggccactgat cgccagcacg gcgtcgcggg tgaggtgcca ttccgcctcg atccgcgcca
      301 tcacatccag cgcgaaggcg cggtcctcca ccagttcgct gtagcgccgg gcgatgggca
      361 ggctggattt ggccagcacc atttccatat tggccagcat ggtgcggaag aaggccgact
      421 tcttatacag gggggccagc tgcgccacgc ccactgccgc cgcagcggtg ccgaagccga
      481 accagcccgg cagcatcacc cgtgcctggg accaggaaaa cacccaggga atcgcccgca
      541 aatcctcaat tttcggggat ttggtgcgtg aggcggggcg gctgccgatc ttgaggtcgg
      601 cgatttccaa aagcggcgtc gcctggcgga aatacgtctc gaagcccgtc gtctcataga
      661 ccaggccgcg ataggcctgg aaagcggtat ccgaaagctg tgccagcagg gcgccgccat
      721 cgtgatcgac cgcatcgtcc tgcggcgaaa gctcggccag cagcgcggcg gcgacaatgg
      781 tttccaggct ggcctggccg atttcaggat cgccatattt cgacgccacc acttcgccct
      841 gttcggtgat gcggatgccg tgggcgctgg cctcggcggg cagggcgcgg atggcgtcga
      901 agctggagcc gccgccgcgt cccaccgcgc cgccgcgccc gtggaagaag cgcatgcgga
      961 taccgcgcgc cttgcccagc gccacaagtc tggcgatgcc ggaatagatt tcccagttgg
     1021 aggtgacata gccgccatcc ttgttgctgt cggaatagcc gatcatcact tcctgcagat
     1081 tgccctgggc ggcgatcatc gcgcgggcca ggggggcgtc gaagtaagtc cccattaccg
     1141 ccgcgctctg gcgcagatcc tcgatggttt cgaacagcgg cacgatgcgc agccgggcat
     1201 gcggcttgtc gcccggcagg aataggcccg cttccttcat cagcaacccg gtttccagca
     1261 ggtcagacgg cgtcgcggcc ttggagatca catattgggc cacagcgcct tcgccgaaat
     1321 tctttttcag cgccgccgcc ctgtcggcga tggccaactc gcgcgctgtc tcggcggaat
     1381 agccggtgta aggcgagcgc agcgggcgag catgggccag ctcgcccagc agcagcgtgg
     1441 tgcgcgccgc ctcgtccagt gccagataat tgtccgtcgc gcccgctgtc ttcagcaatt
     1501 cggctacggc gcgttcatgc acatcgctgt tctggcgcac atccatggtg gcaagatgaa
     1561 agccgaaggc gcccaccgcc tcacgcaagt tgagcagtcg cccttccgcc aggtcgccgt
     1621 cgccattctc agccagcgag gcggcgataa tgtcgaggtc ggcggcgaaa tcctccggcg
     1681 cggcataggg ctcggccttg aaacgtgccc gccgcaccgg ctcggctccc agcaggcggc
     1741 tgcgggtcgc cgccatgcgg gcgtaacagg tgaccagggc gcggcgatag ggctcatcgc
     1801 cctgatgcac ggaaacctgg ttatcgcggg ccgccaaggt tttcaaggcg ctgctggtgg
     1861 cgatcagcga gtcggacagc gacagttccg cccccagggc gtggatctcg cccagataat
     1921 agtccagcac gatctcaccc tggcggcgca cggcatagtc caaggtctcg ggcgagacat
     1981 tgggattgcc gtcgcgatcg ccgcccaccc aggagccgga cttcagatag ggcatcattt
     2041 cgccatcgag cttgaacagg cgcgccagac ggcgcttcac caacggcagg ccgggcagga
     2101 aggtgcgggc gaaaatggcg agattgttct cgatctcgtc ctgcacggtg atgcggttgt
     2161 cgcgcagcat gcgggtttgc cacaagaccc ggatggcgcg cttgagctgc acgtcgattt
     2221 catcgcgttc cgccgtctgc aggctggcca tctcgcgccg ctccaaaagc tcgctcagct
     2281 cattctcgcg gtccaagatg gatttgcgcc gcacttcggt gggatgggcg gtgatcaccg
     2341 gcacgaacag cgcatctttc agataggcgc gcacccgctt aggtgtcagg ccgggatgca
     2401 actccaggcg ctgggccgcg cccgagccca gcgccttggt ctcgcgccgc gcgatataat
     2461 cgtcggcgat gttggccagc tgggaaaaga tggaaaaggc gcggatcagc agcaacatct
     2521 cgggttggct caggcttcgc agccggtcca gcgcgatctc ccc
//
LOCUS       DATMDK010000363         2433 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_157645,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000363 DATMDK010000000
VERSION     DATMDK010000363.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2433)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2433)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2433
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_157645"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            56..>2433
                     /locus_tag="VNN98_07010"
     CDS             56..>2433
                     /locus_tag="VNN98_07010"
                     /inference="COORDINATES: protein motif:HMM:NF025214.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HWM61883.1"
                     /translation="MEVLDLKAMAEQAVALHQQGRLGEAEALYLQILEADPVLFGPRY
                     YLGILRLQQGRNEEACDYLGVALKIFPDDLGALMNYGMALRAAGRPEDAVEIFDRALA
                     IQPSMVEGLYNRGVALADLQRFEMAVDNYDRALVLQPEMLAAMVNRGVALAAMGRFDD
                     AIAGYDRALAMQPGNAAALVHRGLAHRALGRLAQALADYDRALTINPAYDEAHYNRGV
                     ALLDLERAAEALAAFEMVMPAYHANAEMLNNRGVTLWNLKRPAEALESYERALAIEPM
                     FAEAWGNRGLALRDLKRYDEALASFDQVLQLEPRNAVAWNSRGNVLRDRKDWDAAIEC
                     YSRAVEIRPDYAEAIINRGYTLWTLKRYPAGMADVERGLALEPDYPYGRGEVLHVRMF
                     SADWHDFAARKAELEQLVRAGMRAVQPFIFQAIAETAQDAQACSRHWARDKYPEVPSA
                     PHDTAARKKPAKIRIGYLSGEFRQQATAILMAGLYERHDRSRFEIVALDAGLNDGSEM
                     RTRLEKAFDRWVDINPLDDAEAAARIRAEEIDILVNLNGYFGEARAGIFARRPAPLQV
                     NYLGFPATLGAPYIDYILADKIVIPEDEQAFYDEQVVYLPGCYQANDDRGRPMAPVPS
                     RAEAGLPPKGVVFCNFNNAYKLTPATFDSWMRVLKAVDGSVLWLLESPEPYADNLRRE
                     IQARGIAPERLIFAAELPTDQHLARMSLADLFLDGQPYNAHTTGSDALWAGVPLITRR
                     GTTFPGRVAASLLTAAGLPELVTENAADFEALAIKLAGDPKALKKLRDKLAK"
BASE COUNT          437 a          761 c          820 g          415 t
ORIGIN      
        1 ggcggtggcc caagccgctg cgcaggtctg acaagaacaa tacggaaagc acgggatgga
       61 agttctggat ttgaaagcca tggccgagca ggcggtagcc ttgcatcagc aggggcggct
      121 gggcgaggcc gaagcccttt atctgcaaat tctggaagcc gatccggtgc ttttcgggcc
      181 gcgctattat ctgggcattc tcaggctgca acagggccgc aacgaagagg cgtgcgacta
      241 tctgggcgtg gcgctgaaaa ttttccccga cgatctgggc gccttgatga attacggcat
      301 ggcgctgcgc gccgccggcc ggcctgagga cgcggtggag atattcgacc gcgcactggc
      361 gatccagccc agcatggtcg agggccttta caatcgcggc gtggcgctgg ccgacctgca
      421 gcgctttgag atggcggtgg acaattatga ccgcgccctg gtgctgcagc ccgaaatgct
      481 cgccgccatg gtcaaccgcg gcgtggcgct ggcggcgatg gggcgtttcg acgacgccat
      541 tgccggctat gacagggcgc tggcgatgca acccggcaat gcggcggcgc tggtgcatcg
      601 cggcttggcg caccgcgccc tgggccggct ggcccaggcg ctggcggatt acgatcgtgc
      661 cctgacgatc aatcccgcct atgacgaggc acattataat cgcggcgtgg cgctgctgga
      721 cttggagcgc gccgccgagg cgctggcggc gttcgagatg gtgatgcccg cctatcacgc
      781 caatgccgaa atgctgaaca atcgcggcgt gacgctgtgg aatctcaagc gcccggccga
      841 ggcgctggag agttatgaac gtgccctggc gattgagccc atgtttgccg aggcctgggg
      901 caatcgcggc ctggcgctgc gcgatctcaa gcgatatgac gaagcgttgg ccagcttcga
      961 ccaggtgttg cagctggagc cgcgcaatgc cgtggcctgg aacagccgcg gcaatgtctt
     1021 gcgcgatagg aaggactggg acgcggcgat cgaatgctat agccgcgccg tcgaaatccg
     1081 ccccgattat gccgaggcga tcatcaatcg cggctatacc ttgtggacct tgaagcgcta
     1141 cccggccggc atggcggatg tggaacgggg cctggcgctg gaacccgact atccctatgg
     1201 ccgcggcgag gtcctgcatg tgcggatgtt cagcgccgac tggcacgatt tcgctgcgcg
     1261 caaggccgaa ctggagcagc tggtgcgcgc cgggatgcgg gcggtgcagc cattcatctt
     1321 ccaggcgatt gcggaaacag cgcaggatgc gcaagcctgc tcgcgccact gggcgcgcga
     1381 caaatatccc gaagtgccca gtgcacccca tgatacggcg gcgcgcaaga agcctgcgaa
     1441 gatccgcatc ggctatctgt cgggcgagtt ccgccagcag gccaccgcca tcctgatggc
     1501 gggcctgtat gaacgccatg atcgcagccg gttcgagatc gttgccctgg acgccggcct
     1561 caatgacggc agcgagatgc gcacccggct ggaaaaggcc ttcgaccgct gggtcgatat
     1621 caacccgctg gacgatgctg aggccgccgc gcgcatccgc gccgaggaga tcgatatcct
     1681 ggtcaacctg aacggctatt tcggcgaggc ccgcgccggc atcttcgccc ggcggcccgc
     1741 accgttgcag gtgaactatc tgggctttcc cgccaccctg ggcgcgcctt atatcgatta
     1801 catcctggcc gacaagattg tgatccccga agacgagcaa gctttctatg acgagcaggt
     1861 ggtgtacctg cccggttgct accaggccaa tgacgatcgc ggccgcccga tggcgccggt
     1921 gcccagccgc gctgaagcgg ggcttccgcc caagggcgtg gtgttctgca atttcaacaa
     1981 tgcctacaag ctgacgccgg cgaccttcga tagctggatg cgggttctca aagctgtgga
     2041 cggcagcgtg ctgtggctgc tggaaagccc cgagccttat gccgataacc tgcgccgcga
     2101 gatccaggcc cgcggcatcg cgccggagcg gttgatcttc gcagccgaac tgcccaccga
     2161 ccagcatctg gcgcgcatga gcctggccga cctgtttctc gacggccagc cctacaatgc
     2221 ccacaccacc ggcagcgacg cgctgtgggc gggggtgccg ctgattacgc gacgtggcac
     2281 cacctttccg ggccgcgtcg ccgccagcct gctgacggcg gccggcctgc cggagctggt
     2341 gacggaaaat gcggcggact ttgaggcgct ggcgatcaag ctggccggcg atcccaaggc
     2401 cctgaaaaag ctgcgcgaca agctggccaa aaa
//
LOCUS       DATMDK010000364         2553 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_398452,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000364 DATMDK010000000
VERSION     DATMDK010000364.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2553)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2553)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2553
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_398452"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2015
                     /locus_tag="VNN98_07015"
     CDS             <1..2015
                     /locus_tag="VNN98_07015"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HWM61884.1"
                     /translation="KKYFGTTNAIGRQVVIARASCGKEKVSCPAAAATLRVTGVMRDL
                     PHNTQFTIGAVIPHTSPVDRIGDQGKRAWFSFNGYDYVRLAPGSDPAQMSAKLGHIMD
                     RLVNFSGDAGVHMPASRMMRTKLVPFRDVHMNTADTIGNSVPPGSWTTVYGLGLIGLV
                     ILAAACFNFTNLATARAIMRAREIGLRKCVGASRSQVAAQFLGEAVVMAVVALIFAMA
                     LVEILLPSFDSFLGRPIALNYLADWPLLLAIALIAMLAGLLSGIYPALVLSGFRPVTA
                     LRGNQSGQAGSGRLRTALVVLQFAVSIALAISTLVVFAQIDFARNQQLGFRHDNTVVI
                     QTLRRLTPDGRKSFMDMLRAYPGVSGVASSSNTPFSSNVNVNNVHLPGQSGSLTTEQL
                     LITPEFIDLYGMKLAAGRALTDERSEDAVINRPDANNDGHNILINETAARYFGFGVQG
                     AVGKTVVIDKAALHIVGVLKDFRFKGARQAVQPTFYTNDKLDSATLSVRLTGQDIPGT
                     MAFIDRTWHRMAPSTAISRSFLDDSFEKLYQSDRKQGTLFGVFVGVAILIAALGLFGL
                     AAFTVGRRTQEIGIRKVFGARTRDLAILLLWQFSIPVLIANLIAWPLAWYYLQNWLQG
                     FAYRIALSPIYFITAGLAALLIAWVTVFSHALRVARANPIHALRYE"
     gene            2024..>2553
                     /locus_tag="VNN98_07020"
     CDS             2024..>2553
                     /locus_tag="VNN98_07020"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HWM61885.1"
                     /translation="MFRNYLTIALRNIVRHKLYSFINIAGLAVGLACVVFIMLFIRDE
                     LSFDSWVPDSGNLYRVDVDAELPGRPVDHFALAPFVLGGFMKDHLPEVTAMTRLWDVP
                     MTVQVGDRQFLDDTNEADPDFFTVMKLPLVAGDPGQVLQHPESIVLSETLAKKYFGTT
                     NAIGRQVVIARASCGK"
BASE COUNT          431 a          828 c          786 g          508 t
ORIGIN      
        1 cgaaaaagta tttcggcacc accaacgcaa ttggccggca ggtcgtgatc gctcgggcca
       61 gttgcggcaa ggagaaggtc agttgcccgg ccgcggcggc gacgctgcgt gtcacgggcg
      121 tgatgcgcga cctgccgcac aacacccagt tcaccatcgg cgcggtgatt ccccacacct
      181 cgccggtcga ccgcatcggc gatcagggca agagagcctg gttctccttt aatggctacg
      241 actatgtccg cttggccccg ggcagcgatc ccgcccagat gtcggccaag ctgggccata
      301 tcatggaccg gctggtgaac ttctccggag acgccggcgt gcacatgccc gccagcagga
      361 tgatgcggac caagctggtg cctttccgtg acgtgcacat gaacaccgcc gacaccatcg
      421 gcaacagcgt gccgccggga agctggacca cggtctatgg cctggggctg atcggactgg
      481 tcatcctggc agcggcctgt ttcaacttca ccaacctggc cacggcgcgc gccataatgc
      541 gggcgcgcga gatcggcttg cgcaaatgcg tgggcgccag ccgcagccaa gtcgcggccc
      601 agttcctggg cgaggcggtg gtgatggcgg tggtggcgct gatttttgca atggcgctgg
      661 tagaaattct gctgccctct tttgacagtt tcctggggcg gccaatcgcg ctgaactatc
      721 tggccgactg gccgctgctg ctggccatcg ccctcattgc catgctggcg ggcctgctca
      781 gcggcattta tcccgcgcta gtgctgtcgg gctttcgccc cgtcacggcg ctgcgcggca
      841 accagtcggg gcaggcggga tcggggcggc tgcgcaccgc gctggtggtg ctgcagttcg
      901 cggtctccat cgccttggcc atttcaaccc tggtggtttt cgcccagatc gactttgccc
      961 gcaatcagca gctcggtttc cgccacgaca ataccgtcgt catccagaca ctgcggcggc
     1021 tgacgcccga cgggcgcaaa agctttatgg atatgctgcg cgcctatccg ggcgtttcag
     1081 gcgtggcctc gtccagcaac acgcctttct cgtccaacgt caatgtcaac aacgtacatc
     1141 tgccgggcca gtccggttcg ctgaccaccg aacaattgct gatcacgccg gaattcatcg
     1201 atctctacgg catgaagctg gcagccggcc gcgccctgac cgacgagcgc agcgaggatg
     1261 cggtgatcaa ccggcccgac gccaacaatg acggccacaa tattctgatc aacgaaaccg
     1321 cggcccgcta tttcgggttc ggcgtgcagg gcgcggtggg caagaccgtc gtcattgaca
     1381 aggcggcgct gcatatcgtg ggcgtgctga aggatttccg cttcaagggc gcacgccagg
     1441 ctgttcagcc cacattttac accaatgaca agctggattc cgccacgctg tcggtgcgcc
     1501 tgaccgggca ggacattccc ggcaccatgg ccttcataga tcgcacctgg caccgcatgg
     1561 cgccgtcgac ggcaatctcg cgcagcttcc tggacgacag tttcgagaag ctttaccagt
     1621 ccgaccgcaa gcagggcacg ctgttcggcg tttttgtcgg cgtcgccatc ctgatcgcgg
     1681 cgctgggtct gttcggcctg gctgccttca ccgtcgggcg ccgcacccag gagatcggca
     1741 tccgcaaagt gttcggcgcc cgcacccgcg acttggcgat cctgctgctg tggcagttct
     1801 ccatcccggt gctgatcgcc aacctgatcg cctggccgct ggcctggtac tacctgcaga
     1861 actggctgca aggcttcgcc taccgtatcg cgctgagccc gatctatttc atcacggcgg
     1921 gcctggcggc gttgctgatc gcctgggtca ccgtgttcag ccacgctttg cgcgtcgccc
     1981 gcgccaatcc catccacgca ctgcgctacg aataggagcc gcaatgttcc gcaactatct
     2041 caccatcgcg ttacgcaaca tcgtccggca caagctctac agcttcatca acatcgcggg
     2101 cctggcggtt ggcttggcat gcgtggtctt cattatgctg ttcatccgcg acgaactgtc
     2161 gttcgactcc tgggtgccgg acagcggcaa tctctatcgc gtcgatgtcg atgcggagct
     2221 tcccggtcgc ccggtcgatc atttcgccct ggcgcctttt gtgctgggcg gcttcatgaa
     2281 ggatcatctg ccggaggtca cggcgatgac ccggctgtgg gacgttccca tgacggtgca
     2341 ggtgggggat cgccaattcc tggatgacac caacgaggcc gacccggatt tcttcacggt
     2401 gatgaagctg ccgctggtgg cgggcgatcc cggtcaggtg ctgcagcatc cggaatccat
     2461 tgtgctgtcc gagacgctgg cgaaaaagta tttcggcacc accaatgcaa ttggccggca
     2521 ggtcgtgatc gcccgggcca gttgcggcaa gga
//
LOCUS       DATMDK010000365         2415 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1545921,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000365 DATMDK010000000
VERSION     DATMDK010000365.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2415)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2415)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2415
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1545921"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1538)
                     /locus_tag="VNN98_07025"
     CDS             complement(<1..1538)
                     /locus_tag="VNN98_07025"
                     /EC_number="4.6.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF017076.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009975 - cyclase activity [Evidence IEA];
                     GO_function: GO:0016849 - phosphorus-oxygen lyase activity
                     [Evidence IEA];
                     GO_function: GO:0032555 - purine ribonucleotide binding
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate/guanylate cyclase domain-containing
                     protein"
                     /protein_id="HWM61886.1"
                     /translation="MRIAKRFKRARLNGLAILAFAALATAVAVAARHAPVTSIAAGRL
                     DQVIYDSLYQLRPPQDMTGSEVVLVAVDQPALDAVDKDLHEGWPWPRLYWGLAAKLLG
                     QAGAKAVAFDLLFTGSSIRRGADDDMFAMAVDDAAMPVFFATKIGANGKPDAFAPPVT
                     KPVFGATNVADDKVVRIYQPQIGGVPSLAARAARAFDAKAAIPDAPFYLHYYGPHQTP
                     DGKTTFRYVSAGLLAAAGTKRLSLKQVGLSPDIFRGKIVLIGAVTAGTYDLKSTPLAG
                     EYPGLEIHATAIENFLRGERVTPLGPVAVALIAFLFSLTAAAGTILPRQTQFKVLWPS
                     LVTLALVLLAVVLFRGQHIVWLPGATPLFAVLLATFAAYAWSYLTEGRQRQAIVRSFS
                     QFVSPEVVAEIEKDPKSAVVTGERREMTVMFTDIEGFTSITEKLEDTRLVSLLNRYLE
                     EMSGLVLERRGTIDKYIGDAIMSFWNAPLSQPDHAELACRAALDMVAREKALADEFAA
                     IGMRL"
     gene            1669..>2415
                     /locus_tag="VNN98_07030"
     CDS             1669..>2415
                     /locus_tag="VNN98_07030"
                     /inference="COORDINATES: protein motif:HMM:NF012296.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004497 - monooxygenase activity [Evidence
                     IEA];
                     GO_function: GO:0005506 - iron ion binding [Evidence IEA];
                     GO_function: GO:0016705 - oxidoreductase activity, acting
                     on paired donors, with incorporation or reduction of
                     molecular oxygen [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome P450"
                     /protein_id="HWM61887.1"
                     /translation="MPARFIPVAAPVHRRRLSRLETALVARRNVLEIIPALSYRQPIV
                     SGEMLLRWHMLADPAGMKRVMLDNLSNYPKSEIMRRMLRPAIGDSLFNADGAEWKWQR
                     QAVAPVFTHRNVLALAPAMTATAARVCARLAAGGRAELVTEMLTATFDVICDVALSGR
                     EHFDSATFSKAITQYFRTAGRASLLDFLGFPDWFPRPGELMAGSSVRTMHEMVGAAID
                     ARRRQSGPPADDLLAHMLAAKDPETGQQMTP"
BASE COUNT          430 a          830 c          754 g          401 t
ORIGIN      
        1 aggcgcatgc cgatggcggc gaattcatcc gccagcgctt tttcgcgcgc caccatgtcc
       61 agcgccgccc ggcaggccag ttcggcgtga tcgggctggc tgagcggcgc gttccagaaa
      121 ctcatgatcg catcgccgat atatttgtcg atggtgccgc gccgctccag caccaggccg
      181 gacatttcct cgagatagcg gttcagcagg ctgaccagcc tggtgtcttc cagcttttcg
      241 gtgatcgagg tgaagccttc gatatcggtg aacatcaccg tcatctcccg gcgctcgccc
      301 gtcaccacgg cgctcttcgg gtctttctcg atttctgcga ccacttcggg ggacacaaat
      361 tgcgaaaagc tgcgcacgat ggcctggcgc tgacgcccct cggtcagata gctccaggca
      421 taggcagcga aggtcgccag caacaccgcg aacaaaggcg tggcacccgg cagccacacg
      481 atatgttggc cgcggaacaa caccaccgcc agcagcacca gcgccaaggt gaccaggctg
      541 ggccacaaca ctttgaactg agtctggcgc ggcaggatgg taccggctgc cgccgtcaac
      601 gagaacagga aggcgatcag cgcgaccgcc accggaccca gcggcgtgac gcgctcgccg
      661 cgcaggaaat tttcgattgc cgtggcatga atttccagcc ccggatattc gcccgccagc
      721 ggcgtggatt tcaaatcata ggtcccggcg gtgaccgcgc cgatcaatac gatcttgccc
      781 cggaaaatat cgggcgacag gccaacctgt ttcaggctca accgcttggt tccggcggcg
      841 gccaacaacc cggcagagac ataccggaag gtggtcttgc cgtccggcgt ctggtgggga
      901 ccgtaatagt gcagatagaa gggcgcatcg gggatcgcgg ccttggcatc gaaggcgcgc
      961 gccgcccgcg ccgccaggct gggcacgcca ccgatctgcg gctgatagat ccgcacgacc
     1021 ttgtcgtcgg ccacattggt ggcgccgaat accggcttgg tcaccggcgg cgcgaaagcg
     1081 tccggcttgc cgttcgcgcc gatcttggtg gcgaagaaca ccggcatggc ggcatcatcc
     1141 accgccatgg cgaacatgtc gtcatccgcg ccgcggcgga tgctcgagcc ggtgaacagc
     1201 agatcgaaag ccaccgcctt cgcacccgcc tggcccagca gttttgccgc cagcccccaa
     1261 tagagccgcg gccagggcca gccttcgtgc aggtccttgt ccaccgcatc cagcgccggc
     1321 tggtcaaccg cgaccagcac cacctcactg ccggtcatgt cctggggcgg gcgcagctga
     1381 tacagcgaat cgtagatcac ctggtccagc cggccggccg ctatcgaagt gacgggtgca
     1441 tggcgcgcgg caaccgccac tgccgtcgcc agcgcggcga aagccaggat cgccagcccg
     1501 ttcagccggg cgcgtttgaa ccgtttggcg atacgcatcg gcgaaacccc ctcggcagga
     1561 ccccggaagt ccggaacttg tccaactcta gcgggaaagc gatgctcggc gacagggccg
     1621 ccgcactgtg caaaatgcgt acgctccagc agcccccggg agataccctt gcctgcccgt
     1681 ttcattcccg tagccgcgcc cgtccatcgc cgccgcctca gccggctgga aaccgcgctg
     1741 gtggcgcggc ggaacgtgct ggaaatcatc cccgcgcttt cctatcgcca gcccatcgtg
     1801 tcgggcgaaa tgctgctgcg ctggcacatg ctggccgacc ccgccgggat gaagcgggtg
     1861 atgctggaca atctttccaa ctatcccaaa tccgagatca tgcggcgcat gttgcgcccc
     1921 gccatcggcg acagcctgtt caatgccgac ggcgccgaat ggaaatggca gcgccaggcg
     1981 gtggcgccgg tgttcaccca tcgcaatgtc ctggctttgg cgccggccat gaccgccacc
     2041 gccgcgcggg tttgcgccag gctggcagcc ggcgggcggg cggagcttgt cacagaaatg
     2101 ctgaccgcca ccttcgatgt gatctgcgac gtggctttgt cggggcgcga gcatttcgac
     2161 agcgccactt tcagcaaggc catcactcag tatttccgca ccgccggccg cgcctcgctg
     2221 ctggactttc tgggcttccc agactggttc ccccgcccgg gtgaactgat ggccggatcg
     2281 tcggtgcgca ccatgcatga gatggtgggc gcggcgatcg acgcccggcg ccgccagtcc
     2341 ggcccgcccg ccgatgatct tctcgcccat atgctggcgg ccaaagaccc ggagaccggc
     2401 cagcagatga cgccc
//
LOCUS       DATMDK010000366         2915 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2683958,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000366 DATMDK010000000
VERSION     DATMDK010000366.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2915)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2915)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2915
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2683958"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1387)
                     /locus_tag="VNN98_07035"
     CDS             complement(<1..1387)
                     /locus_tag="VNN98_07035"
                     /inference="COORDINATES: protein motif:HMM:NF017076.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CHASE2 domain-containing protein"
                     /protein_id="HWM61888.1"
                     /translation="MPIARLLLGGWGRRAAWTVLVVFLALQAGMPSLFTAPRIGLFDS
                     YQRTLPRTSLHKGVVIVAIDDISLAQLGQWPWPHHVMAKLVSAILQGHPLALGIDMLW
                     PEPDRQSPEQWLKDAGELPPSLTAALRQLPSHDAQLAEALHAGPVAIGIGGLSDTPLK
                     EDKGELAPILLSDLGAPTAMQDPPDVLPSFGTTLRSIPELDHAAAGHGVLSVTPDSDG
                     TFRRLPTVSLVSGRRAPALSLEMLRLAQPGAGWPHLYYSGHGVVGVGVGELRIPTQSD
                     GSIWVNFSSHDPSRFISAADVLRGRIPAAAFDHKLVLLGLTGLGQLDQRRTPLDYMPG
                     VEIQAQLLEDILLGQLAHRPGWAPAAELALTLLAGLLLIVLLPLLRAWWQILLIGTVF
                     LALGGLGFGLWNQLRVLLDVATPMIGQAAVVTALLGGGFAQADLQRRRLKLAAARTEG
                     ELEAARRIQMGI"
     gene            complement(1403..2329)
                     /locus_tag="VNN98_07040"
     CDS             complement(1403..2329)
                     /locus_tag="VNN98_07040"
                     /inference="COORDINATES: protein motif:HMM:NF024118.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HWM61889.1"
                     /translation="MPTPLNAKAVRKKLVNALVKGAGKNLDTPQKAEAFCEQELNFAE
                     GSTFGGNSSCVQVDVGGPDYLICDLGSGVREFALAAIAKHGPKQPQTYHILVSHVHWD
                     HIMGFPFFIPCFIPGNRIILYSCHAKLEQAIRGQNHEPCFPVEFESLGAKIEFVTLET
                     DKAYDICGAKVTGTPQMHGNDSYGYRIEKDGKTVVYTTDSEHKPEDKAEMQRAADFFQ
                     DADLVIFDAMYSLADSVSLKEDWGHSSNVMGVELCQMAGAKKLCLFHHEPVYDDARLE
                     GVFHETIRFEEITRTDTKLDICIAYDGLILDL"
     gene            complement(2359..2727)
                     /locus_tag="VNN98_07045"
     CDS             complement(2359..2727)
                     /locus_tag="VNN98_07045"
                     /inference="COORDINATES: protein motif:HMM:TIGR00377.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043856 - anti-sigma factor antagonist
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="STAS domain-containing protein"
                     /protein_id="HWM61890.1"
                     /translation="MDLHEKSAGGAIVAAAAGRIDLSNADSFKDALSASLVRAKTALI
                     LDLSGVEYISSAGLRALMIVFKTAKAENKGFGIAALQPLLVEIFTISRFNQVFPLFDN
                     VRDGVAKLAPDALSQLDARS"
BASE COUNT          551 a          924 c          934 g          506 t
ORIGIN      
        1 agatgcccat ttggatgcgg cgcgccgctt ccagctcgcc ttccgtccgg gcggcggcca
       61 gcttcagccg gcggcgctgc aggtccgcct gggcgaaacc cccacccaga agcgccgtga
      121 cgaccgcagc ctggccgatc attggggtgg cgacatccag caggacgcgc agctgattcc
      181 acaggccgaa gcccaatccg ccaagggcga gaaacactgt gccgatcaga agtatctgcc
      241 accaggcgcg caacaggggc agcagcacga tcagcagcaa gccggccaac aaggtcagcg
      301 ccagttccgc agccggagcc cagccgggcc ggtgcgccaa ctgtcccaga agaatgtctt
      361 ccagcagttg ggcctggatt tccacgcccg gcatgtaatc cagcggcgtg cggcgctggt
      421 ccagctggcc caatcccgtc agccccagca ggaccagctt gtgatcgaag gcggctgcgg
      481 ggatgcgtcc gcgcaggaca tcggcggcgg aaataaagcg gctgggatca tgggacgaaa
      541 aattgaccca gatgctgcca tcgctctgcg tggggatgcg caattctccc acacccaccc
      601 cgaccacgcc gtggccggaa taataaaggt gcggccagcc ggcgccgggc tgggccagcc
      661 gcagcatctc caggctgagg gcgggcgcgc gccggccgga aaccagcgac accgtgggaa
      721 ggcggcggaa ggtgccgtcg gaatccggcg tcaccgaaag aacgccgtgt cccgcggcgg
      781 catgatcgag ttcggggatg ctgcgcaagg tggtaccgaa gctgggcagc acgtccggcg
      841 ggtcctgcat cgcggtgggc gcccccagat ccgacaaaag gatgggcgcc agctcgccct
      901 tgtcttcctt caagggcgtg tcggatagcc cgccaatgcc gatggccacg ggcccggcat
      961 gcagcgcctc ggccagctgg gcgtcatggc tgggcaattg ccgcaaggcg gcggtcaggg
     1021 acggcggtaa ctcgcccgca tccttcagcc attgctccgg cgattgccgg tcgggctcgg
     1081 gccacagcat gtcgatgccc agcgcgaggg gatgtccctg aaggatcgcg gacaccagtt
     1141 ttgccatcac gtgatgcggc catggccatt ggcccagctg cgccaggctg atgtcatcga
     1201 tcgccacgat caccacaccc ttgtgcaggc tggtccgggg cagggtgcgt tgataggaat
     1261 cgaacaggcc gatgcggggc gcggtgaaca gcgatggcat cccggcttgc aaggccagga
     1321 agacgaccag caccgtccag gcggcgcggc ggccccagcc gcccagcagc aggcgtgcta
     1381 tcggcaagcg ggccatcagc ggtcaaagat ccaggatgag tccatcatag gcgatgcaga
     1441 tgtccagctt tgtgtcggtg cgggtgattt cctcgaaccg gatggtctcg tggaagacgc
     1501 cttccagccg ggcatcgtca tagaccggct cgtgatggaa caggcacagt tttttggcgc
     1561 cggccatctg gcaaagctcc acccccatca cattgctgga atggccccaa tcttccttca
     1621 gcgaaaccga atcagccagc gaatacatgg cgtcgaagat caccaggtcg gcatcctgga
     1681 agaagtccgc cgcccgctgc atttccgcct tgtcttcagg cttgtgttcg gagtcggtgg
     1741 tgtagacgac ggtcttgccg tccttctcga tgcgatagcc gtaggaatcg ttgccgtgca
     1801 tctgcggcgt gccggtgacc ttggcgccgc aaatgtcata ggccttgtcg gtctccaagg
     1861 tgacgaactc gattttggcg cccagcgact cgaactcgac cgggaaacag ggttcgtgat
     1921 tctgcccgcg gatcgcctgt tccagcttgg catggcagct gtagaggatg atgcggttgc
     1981 ccggaatgaa acagggaatg aaaaagggaa aacccataat gtgatcccaa tgcacatgcg
     2041 acaccaggat gtgataggtc tggggttgct tggggccgtg cttggcgatg gccgccagcg
     2101 cgaattcgcg cacgcctgag cccaggtcgc agatcaggta atccggcccg ccgacatcca
     2161 cctgcacgca ggaggaattg ccgccgaaag tgctgccttc cgcgaagttg agttcctgtt
     2221 cgcaaaaagc ctcggccttt tgcggcgtgt ccaggttttt ccccgcgccc ttgaccaggg
     2281 cgttgaccag cttcttgcgc accgccttgg cgttcagcgg tgtcggcaag gagccgcgtg
     2341 ttccccagaa aattaccttc atgagcgtgc gtcgagttgg gaaagcgcat ccggggccag
     2401 cttggcgacg ccgtcacgca cgttgtcgaa cagaggaaac acctggttga agcggctgat
     2461 ggtgaatatc tccaccagca gcggctgcaa ggcggcgatg ccgaagccct tattctcggc
     2521 cttggccgtc ttgaacacga tcatcagcgc gcgcaggcca gcgctgctga tatattccac
     2581 gccggacagg tccaggatca gggcagtttt tgcccgcacc aggctggccg acagcgcatc
     2641 cttgaagcta tccgcgttgg acagatcgat ccggccggcc gcggcggcga caatggcacc
     2701 gccggcgctt ttctcgtgca agtccattgg ccccacagcc ccaaccggcg gaaatgccgc
     2761 tattcttatg gtgccagcct atgccgtccg gccctggccc ggcaaggcta ccagttggtc
     2821 atcgaaccgt cttccagccg gttcaccggc aggaaagcgc gcttgtaagg atatttcgcc
     2881 gccagtttct cgtcgatctc cacccccagg cccgg
//
LOCUS       DATMDK010000367         3962 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_853736,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000367 DATMDK010000000
VERSION     DATMDK010000367.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3962)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3962)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3962
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_853736"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..316)
                     /locus_tag="VNN98_07050"
     CDS             complement(<1..316)
                     /locus_tag="VNN98_07050"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61891.1"
                     /translation="MTEAPRFLRPVTTPSADVGMAVTFETPLPLDSGRSLAPFTVAYM
                     TYGTLNAGKSNAVLICHALTGDQFVASDHPLTGKPGWWTTMIGPGKPIDTERYFVVCP
                     NVL"
     gene            473..1576
                     /locus_tag="VNN98_07055"
     CDS             473..1576
                     /locus_tag="VNN98_07055"
                     /EC_number="2.6.1.9"
                     /inference="COORDINATES: protein motif:HMM:NF012382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004400 - histidinol-phosphate
                     transaminase activity [Evidence IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol-phosphate transaminase"
                     /protein_id="HWM61892.1"
                     /translation="MSPSPKPGILEITPYVGGRAAVPGVTKVFKLSSNESPLGPSPAA
                     LAALDAARASLSLYPEGSAALLREAIGAVHKLDPARIVTSGDGSDALLTMLANAYLQP
                     GDECLFSEHAFLVYKIATLANSAVPVTVPEKDTNTGLKVDVEAMLAAVTPKTRMVYIA
                     NPNNPTGSYLNREEMARLHAGLPQRVLLVIDSAYAEYVTAKDYEAGIELVSKFGNVVM
                     TRTFSKLYGLAGLRIGWMYASASICDVINRIRGPFNTALMQQLMGAAAMRDRDHFWKA
                     VEHNTKWLPWITTEIRKTGLRVDDSVANFVLIHFPSEGEKTAAKADAFLSKGGIILRP
                     VGSYGLPDCLRMTVGTQEQNELAVSLLQQFMAA"
     gene            1587..2489
                     /locus_tag="VNN98_07060"
     CDS             1587..2489
                     /locus_tag="VNN98_07060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020044653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prephenate/arogenate dehydrogenase family
                     protein"
                     /protein_id="HWM61893.1"
                     /translation="MKKLAIIGLGLIGSSIAHAARRGKLAGEIAGYDASADVQERAGT
                     VGFCDTLHADIGGAVKDAELVILCAPVGAYKDIAAAIAPHLAPGAILSDVGSVKGAVI
                     RDVGPHVPRDVHFIPAHPIAGTEFSGPEAGFASLFDGRWAILTPVPGSDPAAVEKLKA
                     FWQGLGSQVDVMDSAHHDLVLAITSHLPHLIAYNIVGTAHDLEQVTEGEVIKYSASGF
                     RDFTRIAASDPTMWRDVFLNNREAVLEVLGRFNEDLSQLQRAVHNGDGQTLFDLFTRT
                     RAIRRAIIDIGQDTAAPNFGRNKP"
     gene            complement(2629..3375)
                     /locus_tag="VNN98_07065"
     CDS             complement(2629..3375)
                     /locus_tag="VNN98_07065"
                     /inference="COORDINATES: protein motif:HMM:NF021423.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2125 domain-containing protein"
                     /protein_id="HWM61894.1"
                     /translation="MFRYSSRFWLYAPISLFLAIAAAVMIHWWMVAGAFEKKLAAIKS
                     HQAIPGVTLDWRTVTVGGFPFRIDADFTDLTIAGAGAHGPFAWTTEKFATHALTYGRP
                     KAVYEAAGQQQVRWTAADGSPHAASFLPGSMRASSILGAEGLRRFDLDIIGMGAKDFT
                     IGRLQFHMRRDPDGSDLDLMLQADSVGARKQVQVYVLLNRAGSLVSLLEGDKSWPEAA
                     ANWRAQGGTAKLSQVIAPGLAADALLSPVY"
     gene            complement(3381..>3962)
                     /locus_tag="VNN98_07070"
     CDS             complement(3381..>3962)
                     /locus_tag="VNN98_07070"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61895.1"
                     /translation="TNEPELPLPLPAPRIAGERGGVVYMTRPLDRPDALLGRTYKIKW
                     LDSDHAFYITINDIEKDGRRRPFEVFINSKNMEAYAWALALTRMISAVFRRGGDVSFV
                     VDELKAIFDPRGGQWMNGRYISSLLAAIGEVIERHLIEIGFLGQRGPSFSPEAHIPAE
                     GARARFCPRCGDPSFVKLEGCDSCLSCGYSKCS"
BASE COUNT          734 a         1226 c         1288 g          714 t
ORIGIN      
        1 cgagcacatt ggggcagacc acgaaatagc gctcggtgtc gatcggcttg ccggggccga
       61 tcatggtggt ccaccagccg ggcttgccgg tgaggggatg gtcggatgcc acgaactgat
      121 cgccggtcag ggcatggcag atcaggacgg cgttgctttt gccggcgttc aaggtgccat
      181 aggtcatata ggcgaccgtg aagggtgcaa gactgcggcc gctatccagc ggcagcggcg
      241 tctcgaaggt gacggccatc ccgacatcgg ccgatggcgt cgtcaccggg cgcaggaaac
      301 gaggggcctc ggtcatcggc aaatccttga agagccgtag ctaaggcgca gccggggtga
      361 agtcaacgaa tggcagcctt gctttgcttt tgggccggtc ccgccctatc aataccggcc
      421 tttttattgg gcggtccggc ttgcgcctaa cgcccctttt tgagaacccc ccatgagccc
      481 gtcaccgaag cccggtatcc tggagatcac cccctatgtc ggcgggcgcg ccgccgtgcc
      541 gggcgtgacc aaggtgttca agctgtcgtc taacgaaagc ccgctgggtc caagcccagc
      601 ggccttggcg gcgctggatg cggcgcgcgc cagcctgtcg ctgtatcccg aaggttcggc
      661 ggcgctgctg cgcgaggcca tcggcgcggt ccataagctg gatccggcgc gcatcgtcac
      721 gtcgggcgac ggctcggacg ccctgctcac catgctggcc aatgcctatc tgcagccggg
      781 cgatgagtgc ctgttcagcg aacatgcttt tttggtttac aagatcgcca ccctggccaa
      841 cagcgcggtg ccggtaacgg taccggagaa ggacaccaac acgggcttga aggtggatgt
      901 cgaagccatg ctggcggcgg tgacgcccaa gacgcgcatg gtctatatcg caaaccccaa
      961 caatcccacc ggttcctatc tgaaccgcga ggagatggcg cggctgcatg ccggtctgcc
     1021 gcagcgcgtg ctgctggtga tcgactcggc ctatgccgaa tatgtcacgg cgaaggatta
     1081 tgaggcgggc atcgaactgg tgtcgaaatt cggcaatgtg gtgatgaccc gcactttctc
     1141 caagctgtac ggcctggcgg ggctgcgtat cggctggatg tatgcctccg cttcgatatg
     1201 cgacgtgatc aaccgtatcc gcggaccctt caataccgcg ctgatgcagc agctgatggg
     1261 cgcagcagcg atgcgcgacc gcgatcattt ctggaaggcg gtggagcaca acaccaaatg
     1321 gctgccctgg atcacaacgg aaatccgcaa gacgggtctt cgcgtggatg acagcgtggc
     1381 caatttcgtg ctgatccatt tcccttccga aggcgagaag accgccgcca aggctgatgc
     1441 ctttctcagc aagggcggca tcattctgcg cccggtgggc agctacggcc tgcctgattg
     1501 cctgcgcatg acggtgggaa cccaggagca gaacgagttg gcggtgtcgc tgctgcagca
     1561 gttcatggcg gcctgagatg gagccgatga aaaaactcgc catcatcggt ttgggcctga
     1621 tcggctcgtc catcgcccat gcggcgcggc gcggcaagct ggcgggcgag atcgccggct
     1681 atgacgccag cgccgatgtg caggagcgcg ccggcactgt cggcttttgc gacacgctgc
     1741 atgccgatat cgggggtgcg gtgaaagatg cggagttggt gatcctctgc gccccggtcg
     1801 gcgcctataa ggacatcgcc gctgcgattg cgccgcatct ggcgcccggc gccatcctgt
     1861 cggacgtggg ctcggtcaag ggcgcggtga tccgcgatgt cggcccgcat gtgccgcggg
     1921 acgtacattt cattccggcc catcccatcg ccggcacgga attctccggc ccggaagccg
     1981 gcttcgccag cctgttcgac gggcgctggg cgatcctgac cccggtgccg ggcagcgacc
     2041 cggcggcggt ggaaaagttg aaagccttct ggcaagggct gggcagccag gtggatgtga
     2101 tggacagcgc ccatcacgat ctggtgctgg cgatcacctc gcatctgccg cacttgatcg
     2161 cctataacat tgtcggcacg gcgcatgacc tggaacaggt cactgaaggc gaagtgatca
     2221 aatattccgc cagcggcttt cgcgatttca cccgcatcgc cgccagcgat cccaccatgt
     2281 ggcgcgacgt gttcctgaac aatcgcgagg ccgtgctgga agtgctgggc cgcttcaacg
     2341 aggatttgag ccagttgcag cgggcggtgc acaatggcga cggccagact ttgttcgatc
     2401 tgttcacccg cacccgcgcc atccgccgcg ccattatcga catcggccag gacaccgcgg
     2461 cgccgaactt cgggcggaat aagccctaga ttgtgttcaa ggcgatctgt gctctcatgc
     2521 ttcgacagtc gttagcgaca gcgtcgcgcg accagcatga ggagcttctc aattcctcac
     2581 cctgagcttg tcgaagggtg acgcagcgat tccatccagc cgcccgctct aatacaccgg
     2641 cgacagcagc gcgtcggcag caagtccggg tgcgatcacc tgggatagtt tcgccgtccc
     2701 gccttgcgcc cgccagttgg cggcggcttc aggccaggac ttatcccctt caagcagcga
     2761 aaccagtgat cccgcccggt tcagcaggac atagacctgc acttgcttgc gcgcgccgac
     2821 ggagtcggcc tggagcatca ggtcgagatc gctgccgtca gggtcgcgcc gcatgtgaaa
     2881 ctgcaagcgc ccgatggtaa agtccttggc gcccatgccg atgatgtcga gatcgaagcg
     2941 gcgcagacct tccgcaccga gaatggagct ggcgcgcatg ctgcccggca gaaaagacgc
     3001 cgcatgggga ctgccgtccg ccgctgtcca tcggacctgc tgttgtccgg cggcttcata
     3061 gacggccttg ggccggccat aggtcagggc gtgagtcgcg aatttctcgg tggtccaggc
     3121 gaaagggccg tgcgcgcccg cacccgcaat ggtgagatcg gtgaaatcgg cgtcaatccg
     3181 gaagggaaag ccgccgaccg tgaccgtgcg ccagtccagg gtcacgcccg ggatcgcttg
     3241 atggcttttg atggcggcca gctttttctc aaacgcgccc gccaccatcc accaatggat
     3301 catgacggcg gcggcgatcg ccaggaacag gctgatgggg gcgtagagcc agaagcggct
     3361 ggaatatctg aacacccgcg ctaactacac ttggaatagc cgcaagacaa acaggaatcg
     3421 cagccttcca gcttgacgaa gctgggatcg ccgcagcgcg ggcagaagcg ggcgcgcgcg
     3481 ccttccgccg ggatatgcgc ctcgggcgag aagctggggc cgcgctggcc caaaaagccg
     3541 atctcgatca ggtgacgttc gatcacttcg ccgatcgccg ccagcaggga cgaaatgtaa
     3601 cgcccgttca tccattggcc gccacgggga tcgaaaatcg ccttcagctc gtccaccacg
     3661 aaggagacat cgccgccgcg gcggaacacc gccgagatca tgcgggtcag cgccagcgcc
     3721 caggcatagg cttccatgtt cttggaattg atgaagacct cgaagggccg ccgccgcccg
     3781 tctttctcga tatcgttgat ggtgatgtag aaggcgtgat cgctgtccag ccatttgatc
     3841 ttataggtgc ggcccagcag cgcgtcgggg cggtccagag gacgggtcat atagaccacg
     3901 ccgccgcgtt cacccgcgat acgcggcgcg ggcaagggca gcggcagttc cggctcattg
     3961 gt
//
LOCUS       DATMDK010000368         3485 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_159265,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000368 DATMDK010000000
VERSION     DATMDK010000368.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3485)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3485)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3485
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_159265"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..848
                     /locus_tag="VNN98_07075"
     CDS             <1..848
                     /locus_tag="VNN98_07075"
                     /inference="COORDINATES: protein motif:HMM:NF044969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61896.1"
                     /translation="AVAAFPEEPERHRLKREIVSTVLINAIVNLAGPVFVLRIREVTG
                     LAAAQVARGFVLSDGAFGLSALKTRIDALDGKIDAGLQTELYDGIADQFRRATSWFLT
                     HVAADAPITETVMQYRASLDALRQSYVLNEGDKKRIEALSKHVPDDLARDWSLMRHLV
                     SALDVALLARDTGKDPDTVAPVYAAVGQTLGLDRLRAMASKFSPPEHWDRLALRRLMD
                     DLSQSQRSIADTLLDNATGVEDWAKSQDGALARTREFLGILESSGELSVAKLMLASSQ
                     IQNLG"
     gene            943..1524
                     /locus_tag="VNN98_07080"
     CDS             943..1524
                     /locus_tag="VNN98_07080"
                     /EC_number="1.14.11.-"
                     /inference="COORDINATES: protein motif:HMM:NF025024.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008198 - ferrous iron binding [Evidence
                     IEA];
                     GO_function: GO:0016705 - oxidoreductase activity, acting
                     on paired donors, with incorporation or reduction of
                     molecular oxygen [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2OG-Fe(II) oxygenase"
                     /protein_id="HWM61897.1"
                     /translation="MGGSPVLSGALVAWQGLFSGEELDTIVRLGDELALEKAELSGGG
                     AGYDNIRSTQVAWMPRGSQTEMLYGRLEDAVLRLNARYFRFDLSGLAMFQYALYGGPE
                     GGHFDWHKDYGRDPADPGQEPRKVTLSLQLSDPADYRGCELQVRAGNQIDVAPKTRGC
                     LVAFPANVLHQVTPIEAGVRRALVVWAVGPEFR"
     gene            1567..2361
                     /locus_tag="VNN98_07085"
     CDS             1567..2361
                     /locus_tag="VNN98_07085"
                     /inference="COORDINATES: protein motif:HMM:NF018352.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MipA/OmpV family protein"
                     /protein_id="HWM61898.1"
                     /translation="MKFAHIVACAILFSCWLPLAVLAAPKQEAPKDWEVTLGAGAGMR
                     PTFEGSDRYTVRPLPVLSVTWRDTISLGEGGLSAYWHRKRFRIGAGLTFDAGRKDHSS
                     GGIFESGDDRLKGLGTINAALGLRGFASYRLGPVNFDLSATKFTGRQNDGIVASLGAS
                     APLPLTKQLVVMPHVHASWANGNAMQTYFGVTAAQASASIFPRFNAGSGLRDVRGGVN
                     IIYRLSPRWFVAGDASVTRLMGDAARSPISISDTNVMVTTMIGYRF"
     gene            complement(2383..3003)
                     /locus_tag="VNN98_07090"
     CDS             complement(2383..3003)
                     /locus_tag="VNN98_07090"
                     /inference="COORDINATES: protein motif:HMM:NF018894.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0035438 - cyclic-di-GMP binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PilZ domain-containing protein"
                     /protein_id="HWM61899.1"
                     /translation="MKDAEPVVAKAGAERRRFRRVKIDLPGRLFIPSDSREARCTVTD
                     LSPGGAAIACEIIPDAGIPVVLYVDGFGRFEGNVVRRDGYGFGVAFVCTPSKRERTAE
                     QLILFLNKTLVDESVLRRHERSSQKGFAKFTRADGTITHCEVMDISVGGVSLKTDVKP
                     PIGEFVLIAQIAGRVARHHLDGIGIEFVGQEKSSDQPVHQINIVRA"
     gene            3289..>3485
                     /locus_tag="VNN98_07095"
     CDS             3289..>3485
                     /locus_tag="VNN98_07095"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61900.1"
                     /translation="MRFFAASYGHGRRLTMLAAAGILAMGLAACSSDSEDTAAAGSPF
                     TQALAKDYSDLAAQASALPAEP"
BASE COUNT          609 a         1109 c         1122 g          645 t
ORIGIN      
        1 ccgctgtggc ggcttttccc gaagaaccgg aacgtcatcg cctgaagcgc gagatcgtct
       61 cgaccgtgct gatcaacgcc atcgtcaatc tggcggggcc ggtctttgtg ctgcgcatcc
      121 gcgaagtcac cggccttgcc gcggcgcagg tggcgcgcgg ctttgtgctc agcgacggcg
      181 ccttcggcct atcggccttg aagacgcgca ttgacgcgct ggatggcaag atcgatgccg
      241 gattgcagac cgagctctat gacgggattg ccgatcaatt tcgccgcgcc acctcctggt
      301 tcttgaccca tgttgccgcg gacgcaccga tcaccgagac cgtgatgcag tatcgcgcca
      361 gcctggacgc gctgcgccag agctatgtgc tgaacgaagg ggacaaaaag cgcattgaag
      421 cactctccaa gcatgtgccc gatgatctcg cccgcgactg gtcgctaatg cgccatctgg
      481 tctctgcgct ggacgtggcg cttctggcgc gcgacaccgg caaggatccg gacacggtcg
      541 cgcccgtata tgccgcagtg ggtcaaacgc tgggactgga ccggctgcgc gccatggcca
      601 gcaaattctc cccgcccgaa cattgggacc ggctggcgct gcgccggctg atggacgatc
      661 tctcccaatc gcagcgcagt atcgcggaca cactcctgga caacgctacc ggcgtggagg
      721 attgggccaa gagccaggat ggcgcgctgg cgcgtacccg cgagttcctg ggtatcctgg
      781 aatccagcgg cgagctttcg gtggcaaaat tgatgctggc ctccagccaa atccagaatc
      841 tgggctgatc ttttcgccgg taacttccga ccgcgccaga tttgtcgtaa gatgtcgcgg
      901 tatccgtgac ttttacataa taatacaagc tcgggggcag cagtgggggg atcaccggtt
      961 ctgtccggcg cgttggtcgc gtggcagggc ctgttcagcg gcgaagaatt ggacacgatc
     1021 gtgcggcttg gcgacgagct ggcgttggag aaggctgaac tgtccggcgg cggcgcaggc
     1081 tatgacaata tccgcagcac ccaggtcgcc tggatgccgc gcgggtccca aaccgagatg
     1141 ctgtacgggc gcctggaaga cgcggtgctg cggctcaatg cccgttactt ccgcttcgat
     1201 ctgtcggggc tggcgatgtt ccagtacgcg ctttatggcg gaccggaggg cggccatttc
     1261 gactggcaca aggattatgg ccgcgacccg gccgatccgg gacaagagcc gcgcaaggta
     1321 accttaagcc tgcagctcag cgatcctgcc gactataggg gctgcgaact gcaggtgcgg
     1381 gccggcaatc agatagacgt ggcgcccaaa acccgcggct gcctggtcgc cttccccgcc
     1441 aatgtgctgc accaggtgac acccatcgaa gcgggagtcc gccgggcgct ggtggtatgg
     1501 gcggtgggac cggagtttcg ctaacgccgc atggcgcgga gagacccaaa cctgtatcgc
     1561 taggcaatga agtttgctca tatcgtggcc tgcgcgatcc tgttcagctg ttggctgccc
     1621 ttggcggtgc tggcggcgcc gaagcaagaa gcccccaagg actgggaggt cacgctgggc
     1681 gccggcgcgg ggatgcggcc gaccttcgag ggcagcgacc gttatacggt gcggccgctg
     1741 ccggtcctgt cggtcacttg gcgcgacacg atttccctcg gcgagggcgg cttgagcgcc
     1801 tattggcacc gcaagcgctt tcgcatcggc gccggcctga cgttcgatgc gggccgcaag
     1861 gaccatagca gcggcgggat tttcgaatcc ggcgacgacc gcctcaaggg actgggcacg
     1921 atcaacgccg ccttgggctt gcggggcttc gcctcctatc gcctgggccc ggtcaatttc
     1981 gatctgtcgg cgaccaaatt taccggccgg cagaatgacg gcatcgtggc gtcgttgggc
     2041 gcctcagcgc cgctgccgct caccaagcag ctggtcgtaa tgccgcatgt gcacgccagc
     2101 tgggccaatg gcaacgccat gcaaacctat ttcggcgtca ccgcggcgca agcttccgct
     2161 tccatttttc cgcgcttcaa tgccggatcg ggcctcaggg acgtgcgcgg cggcgtcaac
     2221 atcatctacc gcctcagtcc gcgctggttc gtggccgggg atgccagcgt cacgcggctg
     2281 atgggcgatg ctgcccgcag ccccatcagc atttccgaca ccaacgtcat ggtcacgacg
     2341 atgatcggct atcgtttctg aaagcaggcc gtccggcgcc ggttacgcgc ggacgatgtt
     2401 gatctggtgt accggctggt cggaggattt ttcctggccg acgaattcga tgccgatgcc
     2461 gtctaggtga tggcgcgcca cccggcccgc gatctgggcg atcaggacga attcaccgat
     2521 cggcggcttg acgtcggtct tcagcgacac gccgcccacg gaaatatcca tgacctcgca
     2581 atgggtgatg gtcccgtcgg cgcgggtgaa tttggcaaag cccttctggc tggaacgctc
     2641 atggcggcgc agcacgcttt cgtccaccag ggtcttgttg aggaacagga tcaactgttc
     2701 ggcggtgcgt tcgcgcttgc tgggggtgca gacgaaggcg acgccgaagc cgtagccgtc
     2761 acggcgcacc acattgccct cgaagcggcc gaaaccgtcg acatacagca ccaccggtat
     2821 gccggcatcg ggaatgatct cgcaggcgat ggcggcgccg cccggcgaca ggtcggtcac
     2881 ggtgcagcgc gcctcgcggc tgtcggacgg gatgaacagc cgccccggca ggtcgatctt
     2941 gacccggcgg aagcgccggc gttcggcacc cgctttcgcg accaccggtt cggcgtcctt
     3001 catggccatc gccaagccct gcacaggctt gccccaaatg ttaatgcctc gacatcttgt
     3061 acccccgccg gggtcaacag gaggttaccg ggaaccctca agatcaacca aaccgccctt
     3121 aatccttgcc cggccccgcc cagacaaaca attgaggggc aatcaagggc caaccaattt
     3181 gaaccagggg cctttttcgc ttccggccgg cgcgctatat ggaagcgtca atttcatggc
     3241 aatgaagggg ctgggcccct cggtaagccg ccagtgggga ccttataaat gcgctttttt
     3301 gcagcttcgt acggccacgg ccgccgcctg accatgcttg cagccgccgg tattctggcg
     3361 atgggcctgg ccgcctgttc cagcgacagc gaggataccg ccgccgccgg ctcacccttc
     3421 acccaggctc ttgccaagga ttacagtgac ttggcggccc aggcgtccgc cttgccggcc
     3481 gaacc
//
LOCUS       DATMDK010000369         5177 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2684671,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000369 DATMDK010000000
VERSION     DATMDK010000369.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 5177)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5177)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5177
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2684671"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..484)
                     /locus_tag="VNN98_07100"
     CDS             complement(<1..484)
                     /locus_tag="VNN98_07100"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61901.1"
                     /translation="MRVGIEESIASALLDGFSGLELVRIPAEPAGDIAVDFWIASLSP
                     ATSHRQWPHLKCVKAVQGLWAGVDALRPLIPAGVTLCNARGVHDAPTAEWAVTAALAM
                     QKYLPFYADLQRRADWSGKDRAEEIYLLSGAARDPDCPVLLEEVCDKTVLILGYGSIG
                     Q"
     gene            complement(486..1967)
                     /locus_tag="VNN98_07105"
     CDS             complement(486..1967)
                     /locus_tag="VNN98_07105"
                     /inference="COORDINATES: protein motif:HMM:NF024910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HWM61902.1"
                     /translation="MDSLHPDADHTLKRGLGLYDSTMIVAGSMIGSGIFIVAAEMARE
                     VGSAGWMMTAWVIAGVLTMAAALSYGELAAMMPRAGGQYVYLREAFSPLWGFLYGWTL
                     FLVIQTGTIAASSVGFARYLGVLVPFVSESRYLIAPIRILPTYALSLSTAQVVSLCLV
                     AFVTWTNSRGLKYGKGVQNVFTTMKIGTLVGVIVIGGLLGWNAMVVHGNFAHAWTPVG
                     VLPPAAGISPLSGFGILIGLCTAQIGSLFAADAWNNITFTAGEVRNPARNVPLSLALG
                     TIIVMTLYILANFAYMVVLPFAQIQSAPSDRVAAAVFEVIFPGIGATLIAIAIMISAF
                     GCMNGMILSGARAYFAMALDGLFFKRAANLNDAKVPASALRMQALWVAVLVLARTYNP
                     ATGTYGNLYSNLLDYVVSAALIFYILTIAGLFRLRRTQPDLPRPYRAWGYPIVPALYI
                     VAATVILAILFLYRPATTIPGVVIVLIGVPVYFAFRAGARRTA"
     gene            complement(1969..2730)
                     /locus_tag="VNN98_07110"
     CDS             complement(1969..2730)
                     /locus_tag="VNN98_07110"
                     /inference="COORDINATES: protein motif:HMM:NF024109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HWM61903.1"
                     /translation="MPRIGIPTTSMYYEGAGKGAPLLLIPGALGTGAGDFSAQIGWFA
                     ARHFHVIAPDPRGYGRSRPPERDYPADFYYRDAADMFALMAALGHERFSILGWSDGAN
                     IAAIMAAQHPARVARLVVFGGQSFLTAEEIAAFNAIRKISAWSPRAAEAMRAVYGDAL
                     DDLWDRYVAGQEALFEAGGDLYRPLLAGVICPTLILHGAKDPLVPRLHPEAIHRGIAG
                     SRLHIFPEGKHNIHLRYADEFNAIAFAFLTEPDRS"
     gene            complement(2736..4829)
                     /locus_tag="VNN98_07115"
     CDS             complement(2736..4829)
                     /locus_tag="VNN98_07115"
                     /inference="COORDINATES: protein motif:HMM:NF024753.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-binding-like beta-propeller repeat protein"
                     /protein_id="HWM61904.1"
                     /translation="MQIQTLTRGAVLAAAITLLGAGNAATQTAGPFTAAQVTAGHAAF
                     LESCAACHNKTLQGGGEAPSLVGSAFIGSWGKRGANELYDVIKTSMPMGNAGSLAPES
                     YQQIVAFILAANGATPGASAFTGDNKDKIASFATGKTPAGLLEAPVPASAARRRAPVA
                     PTGLTVTGVVKNYSPVTDAMLTHPSENDWLMHRGNYQAWDFSRLAQINTANVANLQLR
                     WVWAMDEGGRQQFNPLVHDGVMFLSNNRTNTVQAVDARTGELIWENHIGPVLDNLENA
                     TRTMALYGNLLFYPATSTTLYALDARTGKEVWHTVISSYKDDKIGGMTVIHGKLVVGL
                     TRCDDRAVQDHCWIAGYDTATGKQLWKTLTIADTGTPGGDTWGKLSNDQRAGADAWIT
                     GSYDPELNLTFWGTGQAKPSRRDERGTDGDALFSNTTLALNPDSGKLQWYYQNAPGES
                     LDLDEVYERVLVDQGDQKTVLEVGKTGILWKLDRTNGKFLDLAQTVFQNVWVKFDKKT
                     GRPTYRDDIIHQKPGTAIASCPSPEGGHDWPATSYDQPDDLLLIPLSQTCAMYGAGGQ
                     AFYEMPGSKGNLGRISAYEAKSLKPVWTFQQRAPFLTSIISTAGGVGFVGDFDRVFRA
                     FDVKTGKTLWDTRLGTGAQGFPITFSVGGEQFIAVTTGTQGGSPVQKPSTMLQEVHRS
                     QTGQAVYVFALPKQH"
     gene            complement(4841..>5177)
                     /locus_tag="VNN98_07120"
     CDS             complement(4841..>5177)
                     /locus_tag="VNN98_07120"
                     /inference="COORDINATES: protein motif:HMM:NF019095.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="CHRD domain-containing protein"
                     /protein_id="HWM61905.1"
                     /translation="KVLTVAGQFAGLPSSATAAHIYVGLAIGVPGTEALDLTVSQAVS
                     GGVSGTLTLTAKQAAAFRTGKLYVQIDSQKAPSGNLWGWLLPQHEEAPADVPQQGPWF
                     LPQLNTPSR"
BASE COUNT          982 a         1613 c         1686 g          896 t
ORIGIN      
        1 cctggccgat ggagccatag ccgaggatca gcaccgtctt gtcacagacc tcctcaagca
       61 gcacgggaca atcggggtcg cgcgccgcgc ccgacagaag atagatctcc tcagctctgt
      121 ccttgccgct ccagtcggcg cggcgctgca gatcggcgta gaaaggcagg tacttttgca
      181 ttgccagcgc ggcggtcacc gcccattctg cggtgggtgc gtcatgtacg ccgcgcgcgt
      241 tgcagagcgt gacccccgcc ggaatcagcg gccgcagcgc atccaccccg gcccatagcc
      301 cctgcacggc cttgacgcac ttcagatgcg gccattggcg atgcgatgtc gcgggcgaca
      361 aagaggcgat ccagaaatcc acagcgatgt ccccggccgg ctcggcggga atgcggacca
      421 gttccaaccc gctgaacccg tccagcaaag cggaagcgat cgactcttcg ataccgacgc
      481 gcatcttaag cagtacgccg cgcgccggcg cggaaggcga aatagaccgg cacgccgatc
      541 agcacgatca ccacccccgg gatggtggtg gcgggacgat acaggaacag gatggccagg
      601 atcaccgtgg cggcgacgat ataaagcgcg ggcacgatgg gatagcccca ggcgcgatag
      661 gggcgcggca gatcgggctg ggtgcggcgc aggcggaaca gtcctgcgat agtgaggata
      721 taaaagatca acgccgccga gacgacatag tccagcagat tgctgtagag attgccatag
      781 gtcccggtgg cgggattgta ggtacgcgcc agcaccagca ccgccaccca cagcgcctgc
      841 attctgagcg ccgaggccgg caccttggcg tcattgagat tggcagcccg cttgaaaaac
      901 aatccgtcca gcgccatggc gaaataggcg cgggcgcccg acaggatcat gccgttcatg
      961 cagccgaagg ctgagatcat gatggcgatg gcgatcaggg tggcgccgat gccgggaaaa
     1021 atcacttcaa acaccgcagc ggcgacccgg tcggacggcg cgctttggat ctgggcaaag
     1081 ggcaacacca ccatataggc gaagttggcc agtatataga gtgtcatcac gatgatggtg
     1141 cccagcgcca aggacagcgg cacattgcgg gcgggattgc gcacctcgcc cgccgtgaag
     1201 gtgatgttgt tccaggcgtc ggcggcgaac agcgaaccga tctgtgcggt acaaagcccg
     1261 atcaggatac cgaaacccga cagcggcgaa atgcccgccg cgggcggcaa cacgcccact
     1321 ggcgtccaag cgtgagcgaa attgccatgc accaccatcg cgttccagcc caacagcccg
     1381 ccgatcacga tgacgccgac cagggtgccg atcttcatgg tggtgaagac attctgcacc
     1441 cccttgccgt atttcaggcc ccggctgttg gtccaggtga cgaaggcaac cagacaaagt
     1501 gagaccactt gggccgtgga cagcgacagt gcataggtgg gcaggatgcg gatcggcgcg
     1561 atcagatagc ggctctcgga aacgaatggc accagcacgc ccagatagcg ggcgaaaccg
     1621 accgatgagg cggcgatggt gccggtctgg atcaccagga acagagtcca gccatagaga
     1681 aagccccaga gaggggaaaa agcctcgcgc agatagacat attgcccacc ggcgcgcggc
     1741 atcatcgccg ccagctcgcc ataggacagc gccgccgcca tggtcagtac cccggcgatg
     1801 acccaagccg tcatcatcca gccggcactg ccgacctcgc gcgccatttc cgccgcgacg
     1861 atgaaaatgc cggacccgat catcgacccc gccacgatca tggtggagtc gtagagcccc
     1921 agcccccgtt tgagcgtgtg atccgcgtcg gggtgaaggg aatccatgtc agctccggtc
     1981 tggttcagtc aggaaggcaa acgcgatggc attgaattcg tcagcgtatc ttaggtgaat
     2041 gttgtgcttg ccttcgggga atatgtgcag ccgcgatccg gcgataccgc gatgaatcgc
     2101 ctcaggatgc aatctgggca ccagcgggtc tttggcgccg tgcaggatca gagtcgggca
     2161 tatcacgcct gccaacagtg gccggtacag atcgccgccc gcctcaaaca gcgcctcttg
     2221 cccggcgaca tagcggtccc acagatcgtc cagcgcatcg ccatagaccg cgcgcatagc
     2281 ctctgcggcg cgcggcgacc aggccgagat tttgcggatg gcattgaagg ccgctatctc
     2341 ttccgccgtg aggaaagatt gaccgccgaa caccaccagc cgcgccaccc ttgcgggatg
     2401 ttgggcagcc atgatggcgg cgatattcgc gccgtcgctc cagcccagga tgctgaaacg
     2461 ttcatggccc agcgccgcca tcagcgcgaa catgtcggcg gcgtcacgat aatagaagtc
     2521 tgccggatag tcgcgctccg gcgggcggga gcggccataa ccacgcggat cgggcgcgat
     2581 gacatgaaaa tggcgagccg cgaaccaacc gatctgggcg gaaaaatcgc ccgccccggt
     2641 gcccagtgcg ccggggatca gcaagagcgg tgcgcccttg ccggcccctt cgtaatacat
     2701 cgacgttgtg ggaatgccga tgcggggcat aaaactcaat gctgcttggg aagcgcgaaa
     2761 acatagaccg cctggccggt ctgcgagcgg tgcacctcct gcagcatggt ggacggtttc
     2821 tgcaccgggc tgccgccctg ggtgccggtg gtgaccgcga tgaattgctc gccgccgacg
     2881 ctgaaggtga tgggaaagcc ctgcgccccg gttcccaagc gcgtgtccca caaagtcttg
     2941 ccggtcttga cgtcgaaagc gcggaacaca cggtcgaagt cgccgacaaa ccccaccccg
     3001 ccggcggtgg agatgatgct ggtcaggaac ggcgcgcgtt gctggaaagt ccagactggc
     3061 ttcaagctct tggcttcata agccgagatg cggcccagat tgcccttgct gccgggcatt
     3121 tcataaaagg cctggccgcc cgccccgtac atggcgcaag tctggctgag cgggatcagc
     3181 agcagatcgt cgggctggtc atagctggtg gcgggccagt cgtggccgcc ttccgggctg
     3241 gggcaggaag cgatcgccgt gccgggtttc tggtgaataa tgtcatcgcg gtaagtgggc
     3301 cgccccgtct tcttgtcgaa cttcacccag acattctgga aaaccgtctg cgccagatcc
     3361 aggaacttgc cgttggtgcg gtccagcttc cacaggatgc cggtcttgcc gacttccagc
     3421 acggtcttct ggtcgccctg atccaccagc acccgctcat agacttcatc caggtctagc
     3481 gattctcccg gcgcgttctg gtagtaccat tgcagcttgc cgctatcggg attgagcgcc
     3541 agcgtggtgt tggagaacaa ggcatcgcca tcggtgccgc gctcgtcgcg gcgcgacggc
     3601 ttggcctggc cggtgcccca aaaagtgaga ttgagttccg gatcgtagga gccggtgatc
     3661 caggcgtcgg cgccggcgcg ctggtcgttg ctcaacttgc cccatgtatc gccgcccggc
     3721 gtgccggtgt cggcgatggt caaggtcttc cacaattgct tgccggtggc ggtgtcgtag
     3781 cctgcgatcc agcaatgatc ctgtacagca cggtcgtcgc agcgggtcag cccgaccacc
     3841 agcttgccgt ggatcacggt catgccgccg atcttgtcgt ccttatagct ggaaatgacg
     3901 gtgtgccaga cttccttgcc ggtgcgggcg tccagggcat aaagcgtggt gctggtggcg
     3961 gggtagaaca gcaggttgcc gtacagcgcc atggtgcggg tggcgttctc cagattgtcc
     4021 agcaccgggc cgatatggtt ttcccaaatc agttcgccgg tcctggcgtc taccgcctgc
     4081 accgtgttgg tgcggttgtt cgacaggaac atcaccccgt catgcaccag cgggttgaac
     4141 tgctggcggc cgccctcgtc catcgcccag acccagcgca attgcagatt ggcgacgttg
     4201 gcggtgttga tctgcgcaag acggctgaaa tcccaggcct ggtaattgcc ccgatgcatc
     4261 agccagtcat tctcgctggg gtgggtcagc atcgcgtcgg tgacggggct gtagttcttc
     4321 actacgcctg tgacggtaag gccggttggc gccaccggcg cccgacggcg ggcggcggag
     4381 gcgggcaccg gcgcttccag aagcccggcc ggcgtcttgc cggtggcgaa gctggcgatc
     4441 ttgtccttgt tatcacccgt aaaggcgctg gccccgggcg tcgccccatt ggctgcaaga
     4501 atgaacgcta cgatctgctg ataactctcg ggcgccagag acccagcatt gcccatcggc
     4561 atggaggtct tgatcacgtc atagagttca ttggccccgc gcttgcccca gctgccgata
     4621 aaggccgagc ccaccagcga tggcgcttcg ccgccgcctt gcagggtctt gttgtgacag
     4681 gcggcgcagc tttccaggaa ggcggcgtga ccagcggtga cctgggcggc ggtgaaggga
     4741 ccggccgtct gcgtcgcggc attgcccgcg ccaagcagtg tgatggcggc cgccaacact
     4801 gccccccgcg tcagagtttg gatttgcatg gccattcctc ttagcggctg ggcgtattga
     4861 gctgcggcag gaaccagggg ccctgttgcg gtacgtcggc cggggcctct tcatgctggg
     4921 gcagcagcca gccccacaga ttgccgctgg gtgctttctg gctgtcgatc tgcacgtaaa
     4981 gcttgccggt gcggaaagcg gcggcctgtt tggcggtcag ggtcagcgtg cccgaaacgc
     5041 caccgctgac cgcctgcgac acggtgaggt cgagcgcttc ggtgcccggc acgccgatgg
     5101 cgaggccgac atagatatgc gccgcggttg cggacgatgg caggccggcg aattggccgg
     5161 cgaccgtcag caccttg
//
LOCUS       DATMDK010000370         3518 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_3390665,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000370 DATMDK010000000
VERSION     DATMDK010000370.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3518)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3518)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3518
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3390665"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..544
                     /gene="nadC"
                     /locus_tag="VNN98_07125"
     CDS             <1..544
                     /gene="nadC"
                     /locus_tag="VNN98_07125"
                     /EC_number="2.4.2.19"
                     /inference="COORDINATES: protein motif:HMM:TIGR00078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004514 - nicotinate-nucleotide
                     diphosphorylase (carboxylating) activity [Evidence IEA];
                     GO_process: GO:0019363 - pyridine nucleotide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="carboxylating nicotinate-nucleotide
                     diphosphorylase"
                     /protein_id="HWM61906.1"
                     /translation="ERVALNFLGPLSGTATLTAALVKAVEGTRARIVCTRKTLPGLRS
                     LQKYAVRCGGGFNHRFGLDDAAMIKDNHIQAAGGIAPALARLRAGLGHMVKIEVEVDS
                     LAQLEEALAHGADTILLDNMAPDDLRRAVAMAKGKATLEASGNVTLATVRAVAETGVG
                     YISSGAITHSAPNLDVGLDF"
     gene            complement(726..1349)
                     /locus_tag="VNN98_07130"
     CDS             complement(726..1349)
                     /locus_tag="VNN98_07130"
                     /inference="COORDINATES: protein motif:HMM:NF019128.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell wall hydrolase"
                     /protein_id="HWM61907.1"
                     /translation="MSQKTNDAISRSDRVLVAALAIVLATASAAIGASLTYHPSADKL
                     VAVAPVVRMVEAPKLAIVTADAVMTQLLAEHKCLSEVLYYEARGEGAGGQKAIAEVVF
                     HRMNHGDYGHSICAVVYEGANRSGCQFSFTCNGEAKRPKQVAAWRESEKLAAQILTGQ
                     VALKNATGGALNFHAVSVSPDWAGTMDRTTQIGNHIFYRGMQHMRDS"
     gene            complement(1637..>3518)
                     /gene="ppdK"
                     /locus_tag="VNN98_07135"
     CDS             complement(1637..>3518)
                     /gene="ppdK"
                     /locus_tag="VNN98_07135"
                     /EC_number="2.7.9.1"
                     /inference="COORDINATES: protein motif:HMM:TIGR01828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050242 - pyruvate, phosphate dikinase
                     activity [Evidence IEA];
                     GO_process: GO:0015976 - carbon utilization [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="pyruvate, phosphate dikinase"
                     /protein_id="HWM61908.1"
                     /translation="TGEKLLYGEFLINAQGEDVVAGIRTPQPISKLVRERQGGKKASM
                     EEAMPRAYEELRVIGEQLEQHYRDMQDVEFTVQEGKLFMLQTRAGKRTAEAALKAAVD
                     MEREGLIDKKIAITRVEPEALNQLLHPTLDPDAPREQIATGLGASPGAATGEVAFTAE
                     EAEKLAADHRDVILVRTETSPEDIHGMHAARGILTARGGMTSHAAVVARGMGRPCVSG
                     AGLLKIDAARGEMVSGNVTIRRGDVITIDGATGQVFKGKVGLRQPEMTGDFATLMGWA
                     DEVRALKVRTNADTPADAAAARKFGAEGIGLCRTEHMFFEADRIIAVRQMILADDEAT
                     RKTALAKLLPMQRSDFAAIFKEMAGLPVTIRLLDPPLHEFLPHKEEEFEEVARAAGTN
                     AGKLRARAIALHEANPMLGHRGCRLGITYPEIYEMQARAILEAALAVEEQGGKAVQLE
                     IMIPLVAFKSELGILALRIASVAAAIKQERGKVPAYLIGTMIELPRAALRAGEIAQVA
                     QFFSFGTNDLTQTTLGVSRDDAGMFLGDYLSKGVIARDPFVSLDVDGVGELIRIAVER
                     GRKTREKLKLGICGEHGGDPDTIRFCHDSGLDYVSCSPFRVPIARLAAAQAALKKSRS
                     DV"
BASE COUNT          600 a         1104 c         1120 g          694 t
ORIGIN      
        1 cgagcgggtg gcgctgaatt tcctgggccc gctttccggt accgcgaccc tgaccgccgc
       61 attggtcaag gcggtcgaag gtaccagggc ccgcatcgtc tgcacccgca aaaccctgcc
      121 cggcctgcgc agcttgcaga aatacgcggt gcgctgcggc ggcggcttca atcaccgttt
      181 cgggctggat gacgcggcca tgatcaagga caaccatatc caggcggcgg gcggcatcgc
      241 ccccgctctg gcgcggctgc gcgccggcct gggccatatg gtcaagatcg aagtggaagt
      301 ggacagcctg gcgcaactgg aagaagcgct ggcgcatggc gccgacacca tcctgctgga
      361 caatatggcg ccggacgacc tgcgccgcgc cgtggcgatg gccaaaggca aggcgacgtt
      421 ggaagccagc ggtaacgtca cgctggcgac ggtgcgggcc gtcgctgaga caggggtggg
      481 ttacatcagt tcaggcgcga ttacacattc ggcgccgaat ttggacgttg gattggattt
      541 ctagagtcgc tgggccttac accctcattg tcacggcccg gggttcgtag cgacagcgta
      601 cgaacgggcc gcccaggtga cgccgattgc gaatgtcgaa agttggccac agccaaattc
      661 ttccacaccg gtactatccc acctgggtgg cccgcattcg cgggccatga cactagtgga
      721 tgggactagc tgtcccgcat atgctgcatg ccacgataga agatgtggtt gccgatttgc
      781 gttgtcctgt ccatcgtgcc ggcccagtcg ggcgagaccg agacggcatg gaagttcagc
      841 gccccgccgg tggcgttctt cagcgccacc tggccggtga ggatttgggc cgccagcttt
      901 tcggactcgc gccaggccgc cacctgcttc ggacgcttgg cctcgccgtt gcaggtgaag
      961 gagaactggc agccggagcg gttggcgcct tcatagacca cggcgcagat cgaatggccg
     1021 taatcgccat ggttcatgcg gtggaacacc acttcggcaa tggccttctg gccgccggcg
     1081 ccttcgccgc gggcctcgta atacagcact tccgacaggc atttatgctc ggccagaagc
     1141 tgggtcatca ccgcatcggc ggtgacgata gcaagcttgg gagcctcgac catccgcacc
     1201 acgggcgcca cggcgacaag tttgtccgca gacggatgat aggtcaggga ggcgccgatg
     1261 gcggcgcttg cggtggccag gacaatcgcc agcgcggcga caagcacgcg gtcggaacgc
     1321 gagatcgcgt cattggtttt ctgagacatg agactgtaac tctttcggct cgttggtatc
     1381 gcttggtcaa tgtggcttgg tctatttcgc ccttgcgttt ctttcgcccc ttcggcgttc
     1441 agtgtgcgca gttgctattt caatcaggct tttcgatccg cgtgttcctt caaaagttcc
     1501 gaatggttcc cagcaccttg tgaggggctt atgcctccca aaaaaacgaa tcgtcaaata
     1561 aattttttca ttaacgtgac agtgcgtcat ttgacactga aaaaaccagc gtttccctgc
     1621 gccgtccgta cacagattaa acgtcgctgc gactcttttt caacgccgcc tgggcggccg
     1681 caagacgcgc aattggcacg cggaatggtg aacaggagac atagtcgagc cccgagtcgt
     1741 gacagaagcg gatggtatcg ggatcgccgc catgctctcc gcagatacca agcttgagtt
     1801 tttcacgggt cttgcgcccc cgttccaccg caatgcggat cagctcgccc acgccgtcca
     1861 catccagcga tacaaaggga tcgcgcgcga tcacgccctt gctgagatag tcgcccagga
     1921 acatgccggc atcgtcgcgc gacaccccca gggtggtttg ggtcaaatcg ttggtgccga
     1981 aggagaagaa ttgcgcgact tgcgcgattt cgccggcgcg caaggcggcg cgcggcagtt
     2041 cgatcatggt gccgatcagg taagccggca ccttgccgcg ctcttgctta atggcggccg
     2101 cgacggacgc gatgcgcagc gccaggatgc cgagctcgga cttgaaggcc accaacggga
     2161 tcatgatttc cagctgcacg gctttgccgc cctgctcttc caccgccagc gccgcttcca
     2221 ggatggcgcg ggcctgcatc tcgtagattt cgggataggt gatgcccagg cggcagccgc
     2281 gatggcccag catgggattg gcctcatgca gggcgatggc gcgggcgcgc agcttgccgg
     2341 cattggtgcc ggccgcgcgt gcgacctcct cgaactcttc ttctttgtgc ggcaggaatt
     2401 cgtgcagcgg cggatccagc agccggatgg tcaccggcaa tcccgccatc tctttaaaga
     2461 tggccgcgaa gtcgctgcgc tgcatcggca gcaatttcgc cagtgcggtt ttgcgtgtcg
     2521 cttcatcgtc cgccaggatc atctggcgca ccgcgatgat gcggtcggct tcgaagaaca
     2581 tgtgttcggt acggcacagg ccgatgccct cggcgccgaa cttgcgcgcc gcagcggcgt
     2641 cggcaggggt gtcggcattg gtgcggacct tgagggcgcg cacttcatcg gcccaaccca
     2701 tcagggtggc gaaatcgccg gtcatttccg gctggcgcag accgaccttg cccttgaaca
     2761 cctggccggt ggcgccatcg atggtgatga catcgccgcg gcggatggtg acattgccgc
     2821 tgaccatctc gccccgcgcc gcatcgatct tcagcagccc cgcgcccgag acgcagggcc
     2881 gccccatgcc gcgtgccacc accgccgcat ggctggtcat gccgccgcgc gccgtgagga
     2941 taccgcgcgc cgcatgcatg ccgtgaatgt cttccggact ggtttcggtg cgcaccagga
     3001 tgacgtcgcg gtgatcggcg gccagtttct cggcctcctc ggcggtgaag gcgacttcgc
     3061 cggtggcggc gccgggagag gcgcccaggc ctgtcgcgat ctgctcgcgc ggcgcgtcgg
     3121 ggtccagggt gggatgcaaa agctggttca gcgcttcagg ttcgacccgg gtgatggcga
     3181 tcttcttgtc gatcaggcct tcgcgctcca tatccaccgc cgctttcaag gcggcttccg
     3241 cggtgcgctt gccggcgcgg gtctgcagca tgaacagctt gccttcctgc accgtgaatt
     3301 ccacatcctg catgtcgcgg taatgctgtt ccagttgctc gccgatgacg cgcagttcct
     3361 cataggcgcg cggcatggct tcctccatcg aggctttctt gccgccctgg cgctcgcgca
     3421 ccaatttgga gatgggctgc ggggtgcgaa tgcccgccac cacgtcttcg ccctgggcgt
     3481 tgatcaggaa ttcgccatag agcagctttt cacccgta
//
LOCUS       DATMDK010000371         3813 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_651496,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000371 DATMDK010000000
VERSION     DATMDK010000371.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3813)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3813)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3813
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_651496"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..806
                     /gene="murI"
                     /locus_tag="VNN98_07140"
     CDS             <1..806
                     /gene="murI"
                     /locus_tag="VNN98_07140"
                     /EC_number="5.1.1.3"
                     /inference="COORDINATES: protein motif:HMM:TIGR00067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008881 - glutamate racemase activity
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="glutamate racemase"
                     /protein_id="HWM61909.1"
                     /translation="LSAIGIFDSGMGGLTVMRALKARLPNESFVYLGDTARLPYGTKS
                     ADTVTRYAVQASTALMGYDIKLLVVACNTASAAALPTLIQNLSPLPVVGVIEPGAEAA
                     VAAAPDGPIAVIATEGTVKGGAYVRAIQALAPHMPVVQQACPLFVALAEEGLRGGPIA
                     ELVARRYLDPLLATMPRPRGLVLGCTHFPVLKQTIAKIAGADVVLIDSAETTAMAVER
                     ILQEKSLLQDGSAQPPRFLATDAPGRFADLGRIFLGEPIDPGAVTLMDL"
     gene            complement(979..1716)
                     /gene="truA"
                     /locus_tag="VNN98_07145"
     CDS             complement(979..1716)
                     /gene="truA"
                     /locus_tag="VNN98_07145"
                     /EC_number="5.4.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020045118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(38-40) synthase TruA"
                     /protein_id="HWM61910.1"
                     /translation="MPRYRMTLEYDGGPFVGWQRQDNGASVQGVLENAIEKLSSERVT
                     VTGAGRTDAGVHALGQVAHFDLEKTFEPGKVRDALNHYLRPDPVAVLDAAVTDGEFHA
                     RFSAKSRHYLLRILNRRSPPALEDGRVWHVSHKLDAEAMHAAAQALVGQHDFTTFRAA
                     ECQAQSPVKTLDRLDVSRRADEIHIEASARSFLHHQIRSFAGTLKLVGEGKWRPRDVK
                     AALEARDRAACGPVSPPDGLYLVRVDY"
     gene            complement(1716..2612)
                     /gene="fmt"
                     /locus_tag="VNN98_07150"
     CDS             complement(1716..2612)
                     /gene="fmt"
                     /locus_tag="VNN98_07150"
                     /EC_number="2.1.2.9"
                     /inference="COORDINATES: protein motif:HMM:TIGR00460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004479 - methionyl-tRNA formyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006431 - methionyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methionyl-tRNA formyltransferase"
                     /protein_id="HWM61911.1"
                     /translation="MGTPDFAVPTLAELIAQGHDIAAVYSQPPRPKGRGMALEPGPAH
                     KFAESAKLPVKTPLSLKDAGEQAAFAALNLDAAIVVAYGLLLPKAILDAPRLGCFNLH
                     GSLLPRWRGAAPIQRAVMAGDAETGVMVMRMEEGLDTGPVLMAERVGIGRKTSGELAA
                     ELSRLGADLMVRALGALERGAVTPQAQSENGVTYAKKISKDEARIDWTRSAREIDCHI
                     RGLSAFPGAWTEADGERLKILYAEPAGGSGRPGVTLDNALTVACGDGALKLLKVQRAG
                     GKAMDADALLKGLAVPAGTQLV"
     gene            complement(2635..3153)
                     /gene="def"
                     /locus_tag="VNN98_07155"
     CDS             complement(2635..3153)
                     /gene="def"
                     /locus_tag="VNN98_07155"
                     /EC_number="3.5.1.88"
                     /inference="COORDINATES: protein motif:HMM:NF001159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042586 - peptide deformylase activity
                     [Evidence IEA];
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide deformylase"
                     /protein_id="HWM61912.1"
                     /translation="MTIRPILTAPDPRLQAVSVDVQKVDGEIRKLVDDMAMSMYAADG
                     IGLAAIQIGVAKRVLVIDLDQKEGKKNPVAYINPKILWASDETAVFEEGCLSVPEIWD
                     DVERPARIKAEYLDRDGNSRLLEADGMLATCLQHEMDHLNGVLFIDHLSRLKKSMAIR
                     KLTKAKKLKASA"
     gene            3195..>3813
                     /gene="rmuC"
                     /locus_tag="VNN98_07160"
     CDS             3195..>3813
                     /gene="rmuC"
                     /locus_tag="VNN98_07160"
                     /inference="COORDINATES: protein motif:HMM:NF014680.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA recombination protein RmuC"
                     /protein_id="HWM61913.1"
                     /translation="MELALIILAVAVVLGAVILAFARPRAAAPAPDSRLDAVLSGQGD
                     ISGQFKAAVQAQAELQRTLDERIAALDKRLGENLTDSATKTAASIAGIGERLVVIDEA
                     QKNISALSGQVVSLQQVLSNKQARGAFGQAQMEDIVRDGLPTSLYDFQFTLSNRNRPD
                     CVIRIPGNKALLVIDSKFPLEAFEGLRRAANDEDKKLALAQIRATV"
BASE COUNT          675 a         1264 c         1182 g          692 t
ORIGIN      
        1 atttgagcgc tatcggcatt ttcgattccg gcatgggcgg cctgacggta atgcgcgcgc
       61 tcaaggcacg gttgccgaat gagtctttcg tctatctggg tgataccgcg cggctgccct
      121 atggcaccaa aagcgccgac acggtgacgc gctatgcggt gcaggccagc acggcgctga
      181 tggggtatga catcaagctg ctggtggtgg cctgcaacac cgccagcgcg gccgcgctgc
      241 caaccttgat acaaaatctg tcgcctttgc ccgtggtagg cgtgatcgag cccggtgccg
      301 aagccgccgt ggcggcggcg cccgacgggc ctattgcggt gatcgccacc gaaggcacgg
      361 tgaaaggcgg cgcctatgtc cgcgccatcc aggcgttggc gccgcacatg ccagtggtgc
      421 aacaagcctg tcccctgttc gtggccctgg cggaggaagg cttgcggggc ggcccaatcg
      481 cggaactggt ggcgcggcgt tatctggacc ccctgctcgc caccatgccc agaccgcgcg
      541 ggctggtgtt gggctgcacc catttccccg tactgaaaca aaccatcgcc aagatcgcgg
      601 gcgccgatgt ggtgctgatc gacagcgccg aaaccaccgc catggcggtg gaaagaattc
      661 tacaggaaaa atccttgctg caggacggca gcgcacagcc accccgtttt ctcgccaccg
      721 acgcgccggg ccggtttgcc gatttgggcc ggattttcct gggcgagccg atagaccccg
      781 gcgcagtgac cttgatggat ctctagtaat aaaatttcaa atgtcttggc ccgcgaatgc
      841 gggccaccca ggtgacgcca gcgctccaca ttcagggcaa tcgcgaaccc aactggatgg
      901 cccacacgga gtttacactc cggccgcgct ttgcgcggac cggggtggtg ggccatgaca
      961 atttgggaat tgaaggacct agtaatccac cctcaccaga tataacccgt ccggcggcga
     1021 gaccggaccg caggcggcgc ggtcacgcgc ctccagcgcc gctttcacgt cacgcggcct
     1081 ccatttgcct tcccccacca gcttcagggt tccggcaaag gagcgtatct ggtgatgcag
     1141 aaaagaacgc gccgaggcct cgatatgaat ttcatcggcg cggcggctga catccaaacg
     1201 atccagtgtc ttgaccggcg attgcgcctg gcattccgcg gcgcggaagg tggtaaaatc
     1261 gtgctggccc accaacgcct gcgccgccgc atgcatggct tcggcatcca gcttgtggct
     1321 gacatgccag acccggccgt cttccagcgc cggcgggctg cggcgattga gaatacgcag
     1381 gaggtaatgc cgcgacttgg cggagaagcg ggcatggaat tccccgtccg tcacggcggc
     1441 gtccagcacc gcaaccggat cggggcgcag ataatggttc agggcatcgc gcactttgcc
     1501 cggctcgaat gtcttttcca gatcgaaatg cgccacctgg cccaaggcat gcaccccggc
     1561 atcagtgcgg cccgcaccgg tcaccgtcac gcgctcgctc gacagttttt caatcgcgtt
     1621 ttccagcacg ccctgcaccg aagcgccatt gtcctgccgc tgccagccga caaagggccc
     1681 gccgtcatat tccagggtca tgcgataacg cggcatcaga ccagctgcgt accggccggc
     1741 acggcaaggc ccttgagcaa tgcgtccgca tccatcgcct tgccgcccgc gcgctgcacc
     1801 ttgagaagct tcagtgcgcc gtcgccgcag gccacggtca aggcattatc cagggtgacg
     1861 ccgggccgcc cgctgccgcc ggccggttcg gcgtaaagga tcttcagccg ctcgccatcc
     1921 gcttcggtcc aggcgccggg aaaggccgac aggccgcgaa tgtggcagtc gatctcgcgc
     1981 gccgaccggg tccagtcgat gcgcgcctca tccttggaaa tttttttggc gtaggtgaca
     2041 ccattttctg attgcgcctg cggcgtgacg gcgccgcgtt ccagcgctcc cagcgcccgc
     2101 accatcagat cggcgcccag ccgcgacagt tcagccgcca gttcgccgct ggtcttgcgc
     2161 ccgattccca cccgctcggc catcagcacc gggccggtgt ccagaccttc ctccatccgc
     2221 atcaccatca cgccggtctc ggcatcgccc gccatcaccg cgcgctggat cggggcggcg
     2281 ccgcgccagc gtggcaacag cgagccatgc agattgaagc agcccagcct gggcgcatcg
     2341 agaatcgctt tgggcagcag caggccatag gccaccacaa tggcagcatc cagattcagc
     2401 gctgcgaacg ccgcctgctc gcccgcgtct ttcagcgaca agggcgtctt caccggcagc
     2461 ttggcgcttt cagcgaattt gtgagcgggc cctggctcca gtgccatgcc gcggcccttg
     2521 ggccggggcg gctgggaata aaccgcggca atgtcgtggc cctgggcgat cagttcggca
     2581 agcgtgggca ccgcgaagtc gggggtcccc atgaacgcca gtcgaagcgc cacgtcaggc
     2641 cgacgctttc agcttcttgg ccttggtgag tttgcggatc gccatgcttt tcttcagccg
     2701 cgacagatga tcgatgaaca gcaccccgtt caagtgatcc atctcatgct gcaggcaggt
     2761 ggccagcata ccgtcagcct ccagcaggcg gctgttgccg tcgcggtcga gatactctgc
     2821 cttgatgcga gcggggcgtt cgacatcgtc ccagatttcg ggcaccgaca ggcaaccttc
     2881 ctcgaacacc gccgtctcgt ccgaggccca gaggatcttg ggattgatgt aggcgacggg
     2941 gttcttcttg ccctctttct ggtccaggtc gatcaccagc acccgcttgg ccacaccgat
     3001 ctggatggcg gccaggccga tgccatcggc ggcgtacatg ctcatcgcca tgtcgtccac
     3061 cagcttgcga atctctccat ccaccttttg tacatcgaca gagacagctt ggaggcgcgg
     3121 atcgggggcg gttagaatgg ggcgtatcgt catgggctgg aaataggcgt tcaggtcttt
     3181 tgggtcaagg attcatggaa ttagcactga ttatattggc ggttgcggtg gttctgggcg
     3241 ccgtgatcct ggcctttgcc cgcccccgcg cggccgcgcc ggcacccgat tcccggctgg
     3301 acgcggtgct gtccggccag ggcgatattt ccggccagtt caaggccgcg gtccaggccc
     3361 aggccgaact gcagcgcacc ctggacgagc gtatcgcggc gctggacaag cggctgggcg
     3421 aaaacctgac cgacagcgcc accaagaccg ccgccagcat tgccggcatt ggcgagcggc
     3481 tggtggtgat cgacgaagcg cagaagaaca tctcggccct gtcgggccag gtggtcagcc
     3541 tgcaacaggt tctgtccaac aagcaggcgc gcggcgcctt cggccaggcg cagatggaag
     3601 acattgtgcg cgacgggctg cccacctcgc tctacgattt ccagttcacc ctttccaacc
     3661 gcaaccggcc cgactgcgtc atccgcattc ccggcaataa ggcgttgctg gtgatcgatt
     3721 ccaaatttcc cctggaagct ttcgaaggcc tgcgccgcgc cgccaacgac gaggacaaga
     3781 aactcgcttt ggcccagata cgcgccacgg tga
//
LOCUS       DATMDK010000372         2956 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_403414,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000372 DATMDK010000000
VERSION     DATMDK010000372.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2956)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2956)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2956
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_403414"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1697)
                     /locus_tag="VNN98_07165"
     CDS             complement(<1..1697)
                     /locus_tag="VNN98_07165"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61914.1"
                     /translation="MKLPFANFIKAHHISRAALTAGVLVAAIVFFVAGAGLRLLWGPV
                     SLGPLRGTLAGAIHDALPGIALDYDQAAIEWSRDQGRVNLVVLGARITDSAGRIVVSA
                     PKAAIGLAAAPFLRGQFVVKRITLEGVAFTLVHMKNGRIRLGSQKDAGKDDIIGRISD
                     VIDARGSESSSLESFAVRDAKLGLYDEITGLNLTAPRANLVLRSKGDTIGTSFDADVM
                     ISGRTSHVTADLTLPPDKGPILGNVAITGLDLRALGANAAFFSGVKNLPVVASASTEF
                     RIDPGGKLASAAFDITARGEIPFAAMTGKALHLSSLRLVGRYDGAARHLALTTANLDA
                     KEAHALLKGAGELFYDAGGKLERVRAELSGKSIALDMPGVFPQALGYQSLTVAADYLI
                     EPRQFNITKLNIAAPDFAFDGSGTVTLNDHGAPGLVAKLRIPAMPIRTLLRFWPIPVA
                     SGARSWINANIFAGDIGPLEAQTNFPPGMLDQAILPEDSLKLTFAMKNIEGDYIKGLT
                     RATGVTGDAVMTGDTFKANFTSGHIGPLTARGGTALIPNLHQTGTVGQFDVHVDGAMP
                     "
     gene            1871..2323
                     /locus_tag="VNN98_07170"
     CDS             1871..2323
                     /locus_tag="VNN98_07170"
                     /EC_number="1.11.1.24"
                     /inference="COORDINATES: protein motif:HMM:NF006960.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008379 - thioredoxin peroxidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peroxiredoxin"
                     /protein_id="HWM61915.1"
                     /translation="MGDKAPSFKIASDDGETISSTSLKGAPYVIYFYPKDDTSGCTKE
                     AIGFSESLKKFDKLGVTVIGISKDSLESHAKFRKKHKLKIALGSDPETKMAKDWGVWG
                     EKTLYGRKYMGMARATFLINAKGVIEQAWHKVKVPGHVEAVLEAAKAL"
     gene            2434..>2956
                     /locus_tag="VNN98_07175"
     CDS             2434..>2956
                     /locus_tag="VNN98_07175"
                     /inference="COORDINATES: protein motif:HMM:NF039598.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5930 domain-containing protein"
                     /protein_id="HWM61916.1"
                     /translation="MDTQDSRYPQKKVRFLERVWAWIHVTFPERQIYIRSDGRVQFFT
                     FGPSLQATLAGLTLIFLGWVAFATVNVIFKDRIIAAKDHRYQQMQAAYENRVADLQIS
                     YDELNGALVSAEDRFKATADGLQAKQNAIAGFLNRANQVQTGVGGHSSPAPAVLTTFL
                     AHAAPAASVGGPAA"
BASE COUNT          570 a          907 c          932 g          547 t
ORIGIN      
        1 ggcatggcgc cgtccacatg cacgtcgaac tgccccaccg tgccggtctg gtgcaggttg
       61 gggatcaagg ccgtgccgcc gcgcgcggtc agcggcccga tatggccgga tgtgaaattg
      121 gccttgaagg tgtcgccggt catgacggca tcgcccgtca ccccggtggc gcgggtcagg
      181 cccttgatgt aatcgccttc gatattcttc atcgcgaagg tcagcttgag cgagtcttcc
      241 ggcaatatgg cctggtccag catacccggg gggaagttgg tctgcgcctc cagcggcccg
      301 atatcgccgg cgaagatgtt ggcgttgatc cagctgcggg ccccgcttgc gacgggaatc
      361 ggccaaaagc ggagcagggt gcgtatcggc atggcgggaa tgcgcaactt ggccaccaat
      421 cccggcgcgc catggtcgtt cagggtcacg gttccggaac catcgaaggc aaagtccggg
      481 gcggcgatat tcagttttgt gatgttgaac tggcgcggtt cgatcagata atccgcggcc
      541 accgtcagcg actgataccc cagggcttgc ggaaacacgc ccggcatgtc gagcgcgatg
      601 ctcttgccgg aaagctcggc acggacgcgt tccagcttgc cgccggcatc gtagaacagc
      661 tcgcccgcgc ctttcagcag cgcatgagcc tccttggcgt cgagattggc cgtggtcagc
      721 gccaggtggc gggccgcacc gtcatagcgc cccaccagcc tgaggctgct gaggtgcagc
      781 gccttgcctg tcatcgccgc aaaaggaatt tcgccccgcg cggtgatgtc aaacgcggcg
      841 gaggccagct tgccgccggg atcgatccgg aattcggtgg aggcgctggc caccaccggc
      901 aggtttttca cgccgctgaa aaaggccgca ttcgccccca aggcgcgcag atccagcccg
      961 gtgatggcga cgttgcccag gatcgggccc ttgtccggcg gcaaggtcag gtcggcagtg
     1021 acatggctgg tgcggcccga aatcatcaca tcggcatcga agctggtgcc gatggtgtcg
     1081 cccttggagc gcaacaccag attggcgcgt ggcgcggtca ggttcaggcc ggtgatttcg
     1141 tcataaagcc ccagcttggc atcgcgcacc gcaaagcttt ccagcgaaga agactcgctg
     1201 ccgcgggcat cgatcacatc gctgatgcgc ccgatgatgt cgtccttgcc cgcatccttc
     1261 tggctgccca gccggatgcg gccgttcttc atatgcacca gggtgaaggc taccccctcc
     1321 agggtgatgc gcttgaccac gaactggccg cgcaggaagg gcgcggcggc caggccgatc
     1381 gccgccttgg gggcgctgac gacgatcctg cccgcggaat cagtgatccg ggcgcccagc
     1441 accaccaaat tcacccggcc ctgatcgcgg ctccattcga tggcggcctg gtcataatcc
     1501 agggcaatgc ccggcagcgc gtcgtgaatg gcccccgcca gagtgccccg cagcggcccc
     1561 agcgataccg gcccccacag caggcgcagg cccgccccgg ccacgaaaaa cacgatggcg
     1621 gctaccagca caccggcggt cagcgcagcg cggctgatgt ggtgagcctt tatgaaattg
     1681 gcaaaaggca gcttcacgca gggatttctc tggaggctgg gtgctttagt acgactgtta
     1741 ggcctaaaaa gggcaaatgt tccagcccct tggggtcatg ctgcgattgc gttcacccca
     1801 aaagatgagg ttaaatccaa ttcgttagaa gagcttggga ttttttatgg cgctggcggg
     1861 gggattgtct gtgggcgata aggccccttc tttcaagatc gcaagcgatg acggcgagac
     1921 gatttcctcg accagcctca aaggcgcgcc ctatgtcatt tacttttatc ccaaggacga
     1981 cacctccggc tgtaccaagg aagcgatcgg cttttcagaa agcctgaaga agttcgacaa
     2041 gcttggcgta acggtaatcg gtatttccaa ggatagcctg gaatcccatg ccaagttccg
     2101 caagaaacac aaattgaaga tcgccctggg ctccgatccg gagaccaaga tggcgaaaga
     2161 ctggggcgta tggggcgaaa agacgctgta cggccgcaaa tatatgggca tggcgcgcgc
     2221 cacctttttg ataaatgcca agggcgtcat cgaacaggca tggcataagg ttaaggtccc
     2281 cggtcatgtc gaagccgtgc tggaggcggc caaagcctta tgaagagtcc ttttcgccgc
     2341 gcgttaaccc cgcgattaac ctcgcgctcg tttttctggc accgcagctt gatcggcagg
     2401 ccgggtgcgg gtgaaatgca ggctgggggc gctatggaca cgcaggactc acggtatccg
     2461 caaaagaaag tgaggttcct ggaacgcgtc tgggcctgga ttcatgtcac cttcccggaa
     2521 cgccagattt atatccgcag cgacgggcga gtgcagttct tcaccttcgg cccttcgctg
     2581 caggccaccc tggcgggcct caccctgatt ttcctgggct gggtggcttt cgccaccgtc
     2641 aatgtgatct tcaaggatcg catcatcgcc gccaaggatc accgctacca gcagatgcag
     2701 gccgcctatg agaaccgggt cgccgacctg cagatttcct atgacgagct gaacggcgcg
     2761 ctggtttcgg ccgaagaccg gttcaaggct accgccgacg ggcttcaggc caaacagaac
     2821 gctatcgccg ggttcctgaa ccgcgccaat caagtgcaga ccggggtggg cgggcacagc
     2881 agccccgcac cggcggtgct gacgaccttc ttggcccatg ccgcacccgc cgcctctgtt
     2941 ggagggccag cagcgg
//
LOCUS       DATMDK010000373         2739 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2686965,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000373 DATMDK010000000
VERSION     DATMDK010000373.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2739)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2739)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2739
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2686965"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..371
                     /locus_tag="VNN98_07180"
     CDS             <1..371
                     /locus_tag="VNN98_07180"
                     /inference="COORDINATES: protein motif:HMM:NF013168.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="HisA/HisF-related TIM barrel protein"
                     /protein_id="HWM61917.1"
                     /translation="GRIVVGADAKGGKIATQGWAEVSTLTPVELGKRFEDAGVAAILF
                     TDIDGDGLLAGVNVTATAALARSLSIPVIASGGVGSIADIDALLAAKEPGIEGVVVGR
                     ALYDGRIDVAEALRRTGSAN"
     gene            complement(399..1265)
                     /locus_tag="VNN98_07185"
     CDS             complement(399..1265)
                     /locus_tag="VNN98_07185"
                     /inference="COORDINATES: protein motif:HMM:TIGR00180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000910 - cytokinesis [Evidence IEA];
                     GO_process: GO:0007059 - chromosome segregation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ParB/RepB/Spo0J family partition protein"
                     /protein_id="HWM61918.1"
                     /translation="MTPPNQDRPRGLGRGLSALIGDEVAAVKGEAAARKDTRTLPVAF
                     LQPGRYQPRKSFDEQPLADLAASIKEKGVLSPILVRPIGLDRYEIVAGERRWRAAQIA
                     KLHDVPVVVRELADDQALEIAIIENVQRADLNAIEEGAAYEELIEKFGRTQEDVAREV
                     GKSRSHVANTIRLLRLPEQVKAWVRDGKLTAGHARTLLGAADPEARARELIAGEMTVR
                     QAEQRSAVKKKPGGKPAKDPNIADLEASISNRLGLTVHIIHKGDKGGEMKISYKSLEQ
                     LDELTRRLSKSG"
     gene            complement(1262..2068)
                     /locus_tag="VNN98_07190"
     CDS             complement(1262..2068)
                     /locus_tag="VNN98_07190"
                     /inference="COORDINATES: protein motif:HMM:NF013793.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ParA family protein"
                     /protein_id="HWM61919.1"
                     /translation="MSHPKKPRILVIANQKGGVGKTTTAINLGTALAAVGEPTLVIDI
                     DPQGNASTGLGFHRQDRKLTTYEVLAGTAKLAEAIVPTRIPGLALVPATVDLSGAELE
                     LADMPRRNFILKDALTEYSVHGENAFSYILIDCPPSLTLLTLNAMAAADAVMVPLQCE
                     FFALEGLSQLMKTIELVRDRLNPTLEIQGVVLTMFDKRNKLSDQVAADVRQTLGEKVY
                     TTMIPRNVRVSEAPSHGVPALVYDLRCPGSQAYIKLAGELIQRERLRVAA"
     gene            complement(2007..>2739)
                     /gene="rsmG"
                     /locus_tag="VNN98_07195"
     CDS             complement(2007..>2739)
                     /gene="rsmG"
                     /locus_tag="VNN98_07195"
                     /EC_number="2.1.1.170"
                     /inference="COORDINATES: protein motif:HMM:TIGR00138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005575 - cellular_component [Evidence
                     IEA];
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0031167 - rRNA methylation [Evidence IEA];
                     GO_process: GO:0046118 - 7-methylguanosine biosynthetic
                     process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="16S rRNA (guanine(527)-N(7))-methyltransferase
                     RsmG"
                     /protein_id="HWM61920.1"
                     /translation="SPRQPSPSSWPTSGVKRSKVLFGPEEFAAQTGVSRETLSRLKAY
                     ANVLADWNARHNLVSKTSLTDLWKRHFWDSAQLAPLVPAEAQTLADLGSGAGFPGLLL
                     AAMLPNVAVTLFEATAKKCAFLQAAAERMGLTVTIENARMEDLPPRAFDVVTARACAP
                     LPKLLEYAHSFMGPNSVCLFLKGQNVGSELTEAHKCWNMKLSQVPSQTDPSGAIVTVR
                     EPGPRHVASQKTAHPGHRQPKGRRR"
BASE COUNT          471 a          836 c          891 g          541 t
ORIGIN      
        1 ccggccggat cgtggtcggc gccgatgcga agggcgggaa aatcgccacc caaggctggg
       61 ccgaagtcag caccttgacc ccggtcgaac tgggcaagcg gttcgaggat gccggggtcg
      121 ccgccatcct gttcaccgac atagacggcg acgggttgct ggcgggggtc aatgtcacgg
      181 ccaccgccgc cctagcgcgc agtctgtcta ttccggtgat cgcctcgggc ggggtcggct
      241 ccatcgccga tatcgacgcc ctgctggcag caaaagagcc cgggatcgaa ggcgtggtgg
      301 tgggccgggc gctgtatgac ggccgcatcg acgtggccga agccctgcgc cgcactggca
      361 gcgcaaatta accattcgtt aacaaagact tgaagcgctt agccggactt gctgagacgg
      421 cgtgtgagct cgtccaattg ctccagggat ttgtaggaaa tcttcatttc cccaccttta
      481 tcccctttgt ggatgatgtg aacagtcagc cccaagcggt tggaaatgct ggcttccagg
      541 tccgcgatgt tggggtcttt ggcgggtttt ccaccgggct ttttcttcac cgccgaacgc
      601 tgttcggcct ggcgtacggt catctcgccg gcgatcaatt cccgcgcccg ggcttccgga
      661 tcggccgctc ctaacagtgt tcgggcgtgg ccggccgtca gtttgccgtc ccgcacccag
      721 gcttttacct gctcgggcag gcgcagcaat cggatggtgt tggcgacatg ggaacggctt
      781 ttccccactt cgcgggcgac atcttcctgg gtgcggccga acttctcgat cagctcctca
      841 taggccgccc cctcctcgat cgcgttcagg tcggcgcgct ggacgttttc gataatggcg
      901 atttccagcg cctggtcgtc cgccagctcg cgcaccacca ccggcacgtc gtgcagcttg
      961 gcaatctggg cggcgcgcca gcggcgctcg cctgccacga tctcataacg gtccaggccg
     1021 atgggccgca ccaggatggg cgacagcacg cccttctcct tgatgctggc cgccagatcg
     1081 gccagcggct gctcgtcgaa actcttgcgc ggctggtaac gccccggctg caggaaggcg
     1141 accggcaaag tgcgggtgtc tttgcgggcg gcggcctcgc ccttcaccgc cgcgacttcg
     1201 tcaccgatga gcgccgaaag accgcgcccc aatccgcgcg gccgatcctg gttgggaggt
     1261 gtcatgccgc gaccctgagc cgttcgcgct gaatcaattc gcccgccagt ttgatatagg
     1321 cctgactgcc gggacagcgc agatcataga ccagcgccgg cacgccatgg ctgggagcct
     1381 cggaaacacg gacgtttctg gggatcatgg tggtgtagac tttctcgccc agggtctggc
     1441 gcacatcggc ggcgacctga tcggacagct tgttgcgctt gtcgaacatg gtcagcacca
     1501 caccctgaat ttccaaggtg gggttaagtc tgtcgcgcac cagttcgatg gtcttcatca
     1561 attgtgacag gccttccagg gcgaagaatt cgcattgcag cggcaccatc accgcatccg
     1621 ccgccgccat ggcgttcaag gtcagcaagg tgagggaggg cgggcagtcg atcaggatgt
     1681 aggaaaaggc attttctccg tgtacggaat attccgtcag cgcgtccttc aaaatgaaat
     1741 tgcgccgggg catgtcggcc agctccagtt cggcgcccga cagatcgacg gtggccggca
     1801 ccaacgccaa gccggggatg cgggtgggca cgatggcctc cgccagcttg gccgtaccgg
     1861 ccagcacctc ataggtggtg agcttgcggt cctggcggtg gaagccaagg cccgtggagg
     1921 cgttgccctg ggggtcgatg tcgatcacca gggtcggctc gcccaccgcg gccagggcgg
     1981 tgcccagatt gatcgcggtg gtggtcttac cgacgccgcc cttttggttg gcgatgacca
     2041 ggatgcgcgg ttttttggga tgcgacatga cgggggcccg gctctctcac ggtcactata
     2101 gcacccgacg ggtcagtctg gcttgggacc tgagagagtt tcatgttcca acatttatgg
     2161 gcttcggtca attcagaccc cacattttgt ccttttagga acaagcaaac actgttcggg
     2221 cccatgaagc tgtgagcata ttccagcagc tttggcaggg gggcacaggc ccgggcagtg
     2281 accacgtcga aggcccgagg cggcaagtct tccattcggg cattttcgat ggtgacggtg
     2341 aggcccatcc gctcagccgc tgcttgcagg aaggcgcatt tcttggcggt ggcctcaaac
     2401 agggttacgg cgacgttggg gagcatcgcc gccagcagca ggccgggaaa gccggcgccg
     2461 gagcccaggt cggctagtgt ttgggcttcg gccgggacga ggggcgccaa ttgggcgcta
     2521 tcccagaaat gccgcttcca cagatcggtc aggctggtct tggagaccag attgtgccgg
     2581 gcattccagt cggccaaaac attggcatag gccttaagcc gggacaatgt ttcacgtgaa
     2641 acacccgtct gggccgcgaa ttcttcaggc ccgaacagca cttttgacct tttgacccct
     2701 gacgtgggcc aggacgaggg tgagggctgc cgcggtgac
//
LOCUS       DATMDK010000374         3122 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2925415,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000374 DATMDK010000000
VERSION     DATMDK010000374.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3122)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3122)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3122
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2925415"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1523
                     /locus_tag="VNN98_07200"
     CDS             <1..1523
                     /locus_tag="VNN98_07200"
                     /inference="COORDINATES: protein motif:HMM:NF024753.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="PQQ-binding-like beta-propeller repeat protein"
                     /protein_id="HWM61921.1"
                     /translation="ILHGRTYDNQRFSPFTQINKSNVKTLRPTAIIQTGITKTTEMTP
                     IEVDGVLYLETGDNNIQAYDAITGKELWAYSPALGYSNLCCGQQARGVAVAYGKVYAA
                     QLDGHVVALDARTGKMVWKTDHADALPQPAYFYSFTLAPIAYNGLILVGNAGAEWPTR
                     GFLEALDASTGKLVWRFNTTAAPDQPGGKSWSGDSWKYGGGSVWNTPAIDVKNNLILF
                     ATGNPNPDLDGTSRKGDNAYTNSIVAIESKTGKLKWWYQEVAHDVWDYDACAPVVLFD
                     TIDEHGKLVPAAAEAGKVGNVFIVNRLTGKLLYKSQPFVEQSANIFSPPSRQGTTLLP
                     GVSGGSLWQPPAFSPRTGYFYVLGANVPMTFTTIDFQDSKPGGPWVGRHTGGVMKRAD
                     GPQSGTLTAIDVNNGKIGWQYKSPQPMFGGVLATASDLVFAGEMSGDFNAFDASSGAK
                     LWSHHFDRGVCSPPITYRVKGVQYVAVGANGCRGGHVPLGTPVFSDEIAIFALKSP"
     gene            1828..>3122
                     /locus_tag="VNN98_07205"
     CDS             1828..>3122
                     /locus_tag="VNN98_07205"
                     /inference="COORDINATES: protein motif:HMM:NF019335.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor plug domain-containing
                     protein"
                     /protein_id="HWM61922.1"
                     /translation="MGASALLIASSAYAQEAPSGPVESVTVSSSRIMSAGFNAPTPTT
                     VLGSDFIQSQAKDTIFTTVTQLPSMMGSTGQEANVNGTSGGTNGLSSFNLFGLGTIRT
                     LTLLDGQRFMPANVTGVPDISEFPQLLIQRVDVVTGGASASWGSDAIAGVVNFITDKK
                     FVGFKANMSTGLSTYGDNAALLLQGAIGTSFAGGRGHFEISGEFQHEDGVQGGWRQLT
                     CCGGRSDNSLTHGRTWFIEPTILQYASPGVQSATNPGGAPAGQPQYFVTANGQQNQLG
                     RYGLINSGPLAGTAFGPNGTTYAFNYGTGPAGVNIATGFGGTAQGVPVRSGSASGSAS
                     TPGSVTNCIVQFCAGGEIDNQTGSGVTLASPLTRGDIYTRLSYDLTPNTEVYMTYNWS
                     QVGTSNIPNPDMWLGSLPGIGGGTGQSNISPVALTTGIVS"
BASE COUNT          627 a         1000 c          896 g          599 t
ORIGIN      
        1 ggatcctgca tggccgcacc tatgacaatc agcgcttctc gcccttcacc cagatcaaca
       61 agtccaatgt gaagacgctg cgtcctaccg ccatcatcca gaccggcatc accaagacca
      121 ccgagatgac gccgatcgaa gtggacggcg tgctgtatct ggaaaccggc gacaacaata
      181 ttcaggctta tgacgccatc accggcaagg agttgtgggc ctattcgccg gctttgggtt
      241 attccaacct gtgctgcggt cagcaggcgc gcggcgtcgc cgtcgcctat ggcaaagtgt
      301 acgccgccca gctcgacggc catgtcgtgg cgctggacgc gcgcaccggc aagatggtgt
      361 ggaagacgga tcacgccgac gccctgcctc agcccgctta tttctattcc ttcaccctgg
      421 cgcccatcgc ctataacggc ttgatcctgg tgggcaatgc gggggcggaa tggccgacgc
      481 gcggattcct ggaagcactg gatgcaagca ccggcaagct ggtgtggcgc ttcaacacca
      541 cggcggcgcc ggaccagccc ggcggcaaga gctggagcgg cgacagctgg aaatatggcg
      601 gcggctcggt gtggaacacg cccgccatcg atgtgaagaa caatctgatc ctgttcgcca
      661 ctggtaaccc caatcccgac ctggacggca ccagccgcaa gggcgacaac gcctatacca
      721 attccattgt cgccatcgaa tccaaaaccg gcaaactcaa atggtggtac caggaagtcg
      781 cccatgacgt gtgggactat gacgcctgcg cccctgtggt gctgttcgac accatcgacg
      841 agcatggcaa actcgtgccg gcggcggccg aggccggcaa ggtcggcaat gtcttcatcg
      901 tcaaccgtct caccggcaag ctgctgtaca agtcgcagcc ctttgtcgag cagagcgcca
      961 acatattttc gccgcccagc cgccagggca ccacgcttct gcccggcgtc agcggcggct
     1021 cgctgtggca gccaccggcc ttctcgccgc gcaccggata tttctacgtc ctgggcgcta
     1081 atgtcccgat gaccttcacc accatagatt ttcaggacag caagcccggc gggccctggg
     1141 tcggccgtca caccggcggc gtgatgaagc gcgccgatgg tcctcaatcg ggcaccttga
     1201 ccgcgattga cgtgaacaat ggcaagatcg gctggcagta caaatcgcct cagccgatgt
     1261 tcggcggcgt gctggcgacg gccagcgacc tggttttcgc gggcgaaatg agcggggatt
     1321 tcaacgcctt cgatgccagc agcggcgcca aattatggag ccatcatttc gatagaggcg
     1381 tctgctcgcc gcctatcacc tatcgggtga agggtgtgca gtatgtcgcc gtgggcgcca
     1441 atggctgccg cggcgggcat gtgccgctgg gcacgcccgt gttcagcgac gagatcgcga
     1501 ttttcgcact gaagtcgcca tagataccgg cgaaggcgcc gccttgaaac gcgtgttgaa
     1561 cattggtcgt atttgaagga ttgcgcgaaa tttcgcgcag acacccacca gcaaaattcg
     1621 cttttgtgcc gcgatgcagc aatggaagtt ttgggtggcg tagcaaaatt gctacagcat
     1681 cgaatttgaa atctgcctag tctgaataca attcggctca agttcgaaat acgtccaggg
     1741 ggaaatgcga tgactctcag aaatcatggg aggattccgg ccaatcggca attcttctcc
     1801 gcaaaaaaat ctggtctctt cgcaaccgtg ggtgccagcg cgctgctgat cgcatcttcc
     1861 gcttacgcgc aggaagctcc cagcggaccc gttgaatcgg tcacggtttc gtcgtcgcgc
     1921 atcatgagtg cgggcttcaa tgctcccacg ccgaccaccg tgcttgggtc cgacttcatc
     1981 cagagccagg ccaaggacac gatcttcacc accgtcaccc agctgccttc gatgatgggc
     2041 agcaccggcc aggaagccaa tgtcaacggc accagcggcg gcaccaacgg cctttcctct
     2101 ttcaatctgt tcggcctggg cacgatccgc accctcaccc tgctggacgg ccaacgcttc
     2161 atgcccgcca acgtcacggg cgttcccgac atcagcgaat tcccacaact gttgatccag
     2221 cgcgtcgacg tcgtcaccgg cggcgccagc gcgtcttggg gttcggacgc catcgccggc
     2281 gtggtgaact tcatcaccga caagaaattc gtcggcttca aggccaatat gtccaccggc
     2341 ctttccacct atggcgacaa tgccgccctg ctcctgcagg gagcgatcgg caccagcttc
     2401 gccggtggcc gcggacattt tgaaatctcc ggcgaattcc aacacgagga tggcgtgcaa
     2461 ggcggctggc gccagctcac ctgctgcggc ggacggtcgg acaattcttt gacccacggc
     2521 cgtacttggt tcatcgagcc gacgatcctg cagtatgcaa gccctggcgt tcaatctgca
     2581 actaatcctg gcggcgcgcc cgccggccaa ccgcaatatt tcgtcaccgc caatggccag
     2641 cagaatcagt tgggacgcta tggcctgatc aatagcggcc cattggcggg tacggcgttt
     2701 ggccccaatg gcacgaccta tgccttcaac tatggtaccg gcccggccgg cgtgaacatc
     2761 gccaccggct ttggcggcac cgcacagggc gtgcccgtga ggagcggcag cgcctccggt
     2821 agcgcgagta cgcccggctc agtcaccaat tgtatcgttc agttctgcgc cggcggcgag
     2881 atcgacaacc agaccggctc cggtgtcacc ctggcttcgc cgttgacccg tggcgacatt
     2941 tatacccgtt tatcctatga cctcacgccc aacaccgaag tctatatgac ctacaactgg
     3001 tcccaggtcg gcacctccaa tattcccaat cccgatatgt ggctgggttc tctgccggga
     3061 ataggtggcg gcaccggaca gagcaacatc agtcctgttg ctctgaccac aggcatagta
     3121 tc
//
LOCUS       DATMDK010000375         2771 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_857943,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000375 DATMDK010000000
VERSION     DATMDK010000375.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2771)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2771)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2771
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_857943"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..263)
                     /locus_tag="VNN98_07210"
     CDS             complement(<1..263)
                     /locus_tag="VNN98_07210"
                     /inference="COORDINATES: protein motif:HMM:NF018942.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0030416 - methylamine metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MauE/DoxX family redox-associated membrane
                     protein"
                     /protein_id="HWM61923.1"
                     /translation="MVPVAHEFLTIVALAGRVCVGLILITAAAQKFGHWRILSGVISN
                     YRLLPRILVAPAAALLPPLEMTLGLLLLAGFAQGWAALAATLL"
     gene            complement(263..1486)
                     /locus_tag="VNN98_07215"
     CDS             complement(263..1486)
                     /locus_tag="VNN98_07215"
                     /inference="COORDINATES: protein motif:HMM:NF018172.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0042597 - periplasmic space [Evidence
                     IEA];
                     GO_function: GO:0030058 - amine dehydrogenase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amine dehydrogenase large subunit"
                     /protein_id="HWM61924.1"
                     /translation="MFLSAKTVSAITAVAALILVPSGIALGQTNGVASPLQHVSPTGA
                     VTIPQAEVPSVGTLAPAQPHWVFVNRGNGQDGTRIFDGDTGKMKGMVNMYGQDSFAFD
                     PLGKNFYVAQTIWSKLDRGTRQDMLLVYDVTSLKLTAEIAIPGRMLIGNRTHNLVITA
                     DGKKALIYNMQPSSSVNVVDLDKHAFEQKIELPGCATMLTNTINGFSALCSNGTMATV
                     AMDGPKPSITRSAPFFSATEDPIFDTSILDPKTGKATLLSYSGLITPVTLGAAPKIGA
                     AWSIQQAAFMRKGTYTAMDVNWMPGGRQPIAVHHASGRIYVLMHMGEYWSEYESAQEI
                     WILDGNTHKLIGRHALPGELKDKLANIAVSQDGEPQVYVSDGSGNTFVLDAQTLEKKQ
                     KMDNSGGGILYTVQP"
     gene            complement(1656..>2771)
                     /locus_tag="VNN98_07220"
     CDS             complement(1656..>2771)
                     /locus_tag="VNN98_07220"
                     /EC_number="4.2.1.8"
                     /inference="COORDINATES: protein motif:HMM:NF013429.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008927 - mannonate dehydratase activity
                     [Evidence IEA];
                     GO_process: GO:0006064 - glucuronate catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="mannonate dehydratase"
                     /protein_id="HWM61925.1"
                     /translation="FSRRGMLAASSSALLAGAAGPALAAASNVGGMPQEGPGTPKLTM
                     YVSADPTGSELKKVKQIGIDIVDMPDMPPPPWTEDWFRKRQDLLAAQGLKLGIVMVPW
                     FKNGAMEPEFLKVVHGLPGRDAMIDKLKSSIVAAGKVGLPVVEYDFFPHRANEGYKEI
                     PGRGGSGLLSFDYDRMKDLPPIPSEGAVSYDKVWENLTYFLKALVPVAEKAGVRLCVH
                     PNDPPPKMSRGSGQILNTLKDWKRLIETVDSPSNGLTFDCGVTRELGEDPVAVARYFA
                     SRDRMNHCHFRNVKLTKPNEKYVEVWNDQGDDNLLAVMKELIKNKYTRLIMPEHPRSM
                     ENDKDQKNGGYTGWVYNVGYARAMMQVALMELRGGKG"
BASE COUNT          550 a          843 c          828 g          550 t
ORIGIN      
        1 aatagcagcg tggccgcgag cgcggcccag ccttgcgcaa aaccggcaag caacagcagt
       61 cccagcgtca tctccaacgg cggcagcagc gccgcagcgg gggcgaccag tatccggggc
      121 agcaagcgat aattggaaat cacgccggac aggattcgcc agtgcccgaa cttttgcgcc
      181 gccgccgtta tcaggatcag gccaacgcaa acccggcccg ccaaagcgac gatggtcaga
      241 aattcatggg ccacaggcac catcagggct gcaccgtgta aaggatgccg ccgccggaat
      301 tgtccatctt ctgctttttc tcaagcgtct gggcgtccag cacaaaagtg ttgccgctgc
      361 catcgctgac atagacttgc ggttcgccgt cctggctgac cgcgatgttg gccagcttgt
      421 ccttgagctc gccgggcagc gcatgacggc cgatcagctt gtgggtatta ccgtcaagta
      481 tccagatttc ctgggcggat tcatactcgc tccaatattc gcccatatgc atcagcacat
      541 aaatccgccc ggaagcgtga tgaacggcaa tcggctggcg gccgcccggc atccagttca
      601 cgtccatcgc cgtgtaggtg cctttgcgca tgaaagccgc ctgctggatg gaccaggccg
      661 cgccgatctt gggcgccgcc cctaaggtga ccggcgtgat caagccgcta tagctcagca
      721 aggtggcctt gccggtcttg ggatccagaa tggaagtgtc gaagatcgga tcctcggtgg
      781 ccgagaagaa gggcgcagag cgggtgatgc tgggcttggg cccatccatt gccacggtcg
      841 ccatggtgcc gttggaacac agggccgaaa aaccgttgat ggtgttggtc aacatggtgg
      901 cgcagccggg cagctcgatc ttctgttcga aggcatgctt gtccaagtcc acgacattga
      961 ccgaagacga aggctgcatg ttgtagatca gcgccttctt gccgtcggcg gtgatcacca
     1021 gattgtgggt gcggttgccg atcagcatgc ggccggggat cgcaatctcc gccgtcagct
     1081 tcaggctggt cacatcatag accagcagca tgtcctggcg ggtgccgcga tccagcttcg
     1141 accagatggt ctgggcgaca tagaaattct tgcccagcgg atcgaaggca aaactgtcct
     1201 ggccatacat attgaccatg cccttcatct tgccggtgtc accgtcgaag atgcgggtac
     1261 cgtcctggcc gttgccgcga ttgacaaaga cccagtgcgg ctgcgccgga gccagggtgc
     1321 ctacgctggg aacttccgcc tgcgggatgg tcaccgctcc ggtgggagag acatgctgca
     1381 ggggcgaggc gacaccgttg gtttggccca gcgctatacc cgaaggcacc aggatcagcg
     1441 cggcaactgc cgtgattgcg gacaccgttt ttgcggacaa aaacatcgtt attcccctat
     1501 agccgctttc gggcctgctt ttttgacagc tttggcctgg aaaagcaggg agtcaacgcg
     1561 aaaagagcac caaaaaccgc cgctgagcgg ctggctgagg gcggcaacaa gcgctgccat
     1621 cgggccgccg gcaatctcgc tttaaaatgc ggcaatcacc ccttgccgcc gcgtaactcc
     1681 atcagggcga cctgcatcat cgccctggca tagcccacgt tataaaccca gccggtatag
     1741 ccgccattct tctggtcctt gtcattctcc atgctgcggg gatgttcggg catgatcagg
     1801 cgggtgtatt tgttcttgat cagctccttc atcaccgcca gcagattgtc gtcgccctgg
     1861 tcgttccaca cctcgacata tttctcattg ggcttggtca gtttcacgtt gcggaaatgg
     1921 caatggttca tgcggtcgcg gctggcgaaa tagcgggcaa ctgcaaccgg gtcctcgccc
     1981 agttcgcggg tgacaccgca atcgaaggta agaccgttgg atggcgaatc caccgtctcg
     2041 atcaaccgct tccagtcttt caaggtattg agaatctggc cggaaccacg gctcattttg
     2101 ggcggcgggt cattgggatg tacgcacagc cgcacccccg ctttctcggc caccggcacc
     2161 agcgctttca ggaaataggt aaggttttcc caaaccttat cgtagctgac ggcgccttcg
     2221 gacggaatcg gcggcaggtc cttcatgcgg tcgtaatcga aggacagcag gcccgaaccg
     2281 ccgcggccgg gaatttcctt gtagccttcg ttggcgcggt ggggaaagaa atcatactcc
     2341 accaccggca gcccaacctt gcccgccgcg acgatggaag atttgagctt gtcgatcatg
     2401 gcatcgcgcc caggcaggcc gtgcacgact ttgaggaact ccggttccat cgcgccattc
     2461 ttgaaccagg gcaccatcac gatccccagc ttcaatcctt gcgccgccaa aaggtcctgg
     2521 cgcttgcgga accagtcttc ggtccagggc ggcggcggca tgtcgggcat gtccacaata
     2581 tcgatgccga tctgcttgac ctttttcagt tcggacccgg tgggatcagc cgagacatac
     2641 atggtgagct tgggtgtacc cggaccttcc tgcggcatgc cgccgacgtt ggaagcggca
     2701 gccagggccg gaccggccgc gccagccagc aacgcactgc tggacgccgc caacatgccg
     2761 cgccgggaaa a
//
LOCUS       DATMDK010000376         2264 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_405980,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000376 DATMDK010000000
VERSION     DATMDK010000376.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2264)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2264)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2264
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_405980"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..361
                     /locus_tag="VNN98_07225"
     CDS             <1..361
                     /locus_tag="VNN98_07225"
                     /inference="COORDINATES: protein motif:HMM:NF044849.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61926.1"
                     /translation="LAGQPSAALGEVAPSYRPGVTPTDLSSCLPDYAIAAIREALPAF
                     GRQIKGFDRADAVLTGVETRTSSPIRIQRGEDYQSLNTRGLYPAGEGAGFAGGILSAA
                     VDGIRVAEAVAKSIANA"
     gene            complement(358..1077)
                     /locus_tag="VNN98_07230"
     CDS             complement(358..1077)
                     /locus_tag="VNN98_07230"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HWM61927.1"
                     /translation="MSLTVDSVTKKFRRFPALNGASFVAPQGSFVSLLGPSGSGKTTL
                     LRILGGLEFADSGTVRFADLNWLDMPARIRNAGFVFQQYALFKHMTVADNIAFGLRVR
                     PRGRRPSGADIKRRVTELLALVQLAGLEDRYPSQLSGGQRQRVALARALAIEPRMLLL
                     DEPFGALDAKVRKELRADLRRIHDHAGVTTVFVTHDQEEAFAVADLVAVMKEGRIEQY
                     GAPADVRRNPRTAFVSEFLSA"
     gene            complement(1087..1971)
                     /gene="cysW"
                     /locus_tag="VNN98_07235"
     CDS             complement(1087..1971)
                     /gene="cysW"
                     /locus_tag="VNN98_07235"
                     /inference="COORDINATES: protein motif:HMM:TIGR02140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0015419 - ABC-type sulfate transporter
                     activity [Evidence IEA];
                     GO_process: GO:0008272 - sulfate transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate ABC transporter permease subunit CysW"
                     /protein_id="HWM61928.1"
                     /translation="MKAFLNGRSGSRRRSFKSPTEDPLWLKLLLSAVAISFIAIVLLF
                     PLVLVFTEAFAKGFAAFWEAIVEPDSLAAVRLSLTVAAIAVPLNTVFGIAAAWSIAKF
                     DFPGKTFLVTLIDLPFSVSPVVSGLIYVLVFGMQGWFGRGLADHDIHILFALPGMVLA
                     TIFVTFPFVARELIPLMVDQGRDEEEAAISLGASGLSTFLRVTLPNIKWGLLYGVLLC
                     NARALGEFGAVSVVSGHIRGQTNTMPLHIELLYNNYNYVGAFAVAALLAMLALVTLAL
                     KTLLEWRYADELAAAHRH"
     gene            complement(1968..>2264)
                     /locus_tag="VNN98_07240"
     CDS             complement(1968..>2264)
                     /locus_tag="VNN98_07240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016655420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HWM61929.1"
                     /translation="LGATRLQTIARIVFPPLLPAILTGAAMAFARGVGEYGSIIFIAG
                     NIPAVSEIAPLLIVTKLEQYDYAGAAAIGVVMLATSFVLLLALNGLQSWAAKRR"
BASE COUNT          471 a          731 c          712 g          350 t
ORIGIN      
        1 tctcgccggg caaccgtcag ccgcattggg cgaagtggcc ccctcctatc gccccggcgt
       61 gacgcccacg gatctgtcgt cctgtctgcc ggactatgcc atcgccgcga tccgcgaggc
      121 tctgcctgcc ttcgggcggc agatcaaggg ctttgaccgc gccgatgcgg tgctgacggg
      181 cgtggagacg cgcacctcca gccccattcg catccagcgc ggcgaagatt atcaaagcct
      241 gaatacgcgc ggcctttatc ccgcaggcga aggcgcgggc ttcgccggcg gcattctatc
      301 ggcggcggtc gatggcatca gagtggcgga agcggtcgcg aaatccatcg cgaacgctta
      361 ggcgctcaaa aactccgaca caaaggcggt gcgaggattg cgccgcacat cggcgggcgc
      421 gccatattgc tcgatgcgcc cctccttcat caccgccacc aagtcggcca cggcgaaggc
      481 ttcttcctgg tcgtgggtga cgaacacggt ggtcactccg gcatggtcat ggatgcggcg
      541 caggtcggcg cgcaattcct tgcgcacctt ggcgtccagc gcgccgaaag gttcgtccag
      601 cagcagcatg cgcggctcaa tggcgagcgc gcgcgccagc gccacacgct ggcgctggcc
      661 gccggacaac tggctgggat agcggtcttc caggccggcc agctgtacca gcgccagcaa
      721 ttcggtcacc cgccgcttga tgtcggcacc gctgggccgc cggccccgcg gccttacccg
      781 aaggccgaag gcgatattgt ctgccacggt catgtgtttg aacaaagcat attgctggaa
      841 gacaaaaccg gcattgcgga tgcgggccgg catgtccagc caattgaggt cggcaaaacg
      901 caccgtgccg ctgtcggcga attccagccc gcccaggata cgcagcaagg tggtcttgcc
      961 cgagcccgac ggccccagca acgacacgaa gctgccctgg ggcgcgacga aactggcgcc
     1021 gttcaaggcc gggaagcgac ggaatttttt ggtgacagaa tcaacggtca aggacatcgt
     1081 cttctcctaa tggcgatgcg ccgcggccaa ctcgtccgcg tagcgccatt ccagcagtgt
     1141 tttgagggca agggtgacca gcgccagcat cgccagcagg gcggcgacgg cgaaggcgcc
     1201 gacataattg taattgttgt agagcagctc gatatgcagc ggcatcgtat tggtctggcc
     1261 gcgaatatga cctgacacca ccgacacggc gccgaactcg cccagggcgc gggcgttgca
     1321 gagcagcacg ccatagagca agccccattt gatattgggc agggtcacac gcaggaaggt
     1381 ggataggccc gaggcaccca gcgaaatagc ggcctcttcc tcgtcgcggc cctgatccac
     1441 catcagcggg atcagttcac gcgccacgaa gggaaaagtg acgaagatgg tcgccagcac
     1501 catccccggc agcgcgaaca ggatgtgaat gtcatgatcc gccagccccc gcccgaacca
     1561 gccctgcatg ccgaacacca gcacatagat caatcccgac accaccggcg acaccgagaa
     1621 aggcaagtcg atcaaggtca ccaaaaaggt cttgccggga aaatcgaact tggcgatgga
     1681 ccaggcggcg gcgatgccga acacggtgtt cagcggcacg gcaatggcag ccaccgtcag
     1741 cgacagtctg acggcggcca ggctgtccgg ctccacaatg gcctcccaga aggcggcaaa
     1801 acccttggcg aaggcctcgg tgaataccag caccagcggg aacagcagca cgatggcgat
     1861 aaaagaaatc gccaccgcgc tcaacaacag cttgagccac agcgggtctt cggtggggct
     1921 tttgaaggag cgtcggcgag agccggagcg accatttaaa aaagctttca tctgcgtttc
     1981 gccgcccagc tttgcagccc attcagcgcc agcagcagca cgaagctggt ggccagcatc
     2041 accacgccga tcgccgccgc tccggcataa tcatactgtt ccagcttggt gacgatcagc
     2101 agcggcgcga tctcgctgac cgccgggatg ttgccggcaa tgaaaatgat ggagccgtat
     2161 tcgccgacgc cgcgggcgaa ggccatggcc gcgccggtca ggatggccgg cagcaagggc
     2221 gggaacacga tcctggcgat ggtctgcagc cgcgtcgcgc ccaa
//
LOCUS       DATMDK010000377         3413 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2927112,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000377 DATMDK010000000
VERSION     DATMDK010000377.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3413)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3413)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3413
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2927112"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1044)
                     /locus_tag="VNN98_07245"
     CDS             complement(<1..1044)
                     /locus_tag="VNN98_07245"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HWM61930.1"
                     /translation="MLLNKGRESEALQLCRGVLEQEPDNFPALYTAGTIFLQRGDSAT
                     AEAFLKHAVNISPDRPEVHNNLGLAFAKQSKLADAIAQFEKALALRAQYPNALLNLGN
                     ALRRTGQAAAAIAAYDRAILLSPQDADLHYSRGGALEDLSHYPDAIAAYQMAIKLRPA
                     FAQAYNNLGNAFFAAGKLQEACDAFTAAIHNKPDYAEAHANRASARFGLRDLAGALEN
                     CDIAISLNPLLAEAYCNRCAVRREMGEIAAATADGIKALEIRPDYLDAQWNLALIQLL
                     TGDWGTGWAGFELRFRKAIGRIEKPAPDVPDWAGESLVDKDLLIYCEQGLGDTIQFIR
                     LALALRHIAKHIVV"
     gene            complement(1152..2228)
                     /locus_tag="VNN98_07250"
     CDS             complement(1152..2228)
                     /locus_tag="VNN98_07250"
                     /EC_number="1.14.11.-"
                     /inference="COORDINATES: protein motif:HMM:NF025024.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008198 - ferrous iron binding [Evidence
                     IEA];
                     GO_function: GO:0016705 - oxidoreductase activity, acting
                     on paired donors, with incorporation or reduction of
                     molecular oxygen [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2OG-Fe(II) oxygenase"
                     /protein_id="HWM61931.1"
                     /translation="MEIEERASHGDGQAQLALAMRHESEGRHEMARGWFARAAQTGQP
                     NALRRLAENLMVQPPIRPREGAEIMLSAAMGGDAKASFICAAIAGQASDDPARWHQAL
                     DFLAQAKRQGSAEAADALTLLAGLQTEAPWDGAVRHMDQARDAALAASHTRFETPRIG
                     TCEKFASPAECDWLIARAATRLTDAELYDPAGDGGFRNDALRNNRDAGFNMVQSDLVL
                     VQLQARIAALMELDMQEMEPAMVLQYAPGQYFAPHCDGLDPSLAPQAREIARNGQRVA
                     TLLIYLNDDYQAGDTDFPDLGWRFKGARGDALWFWNVDGAGRCDPRTRHAGLAPSGGE
                     KWLLSQWIRQRSGPQQSAYAAQWT"
     gene            2349..>3413
                     /locus_tag="VNN98_07255"
     CDS             2349..>3413
                     /locus_tag="VNN98_07255"
                     /inference="COORDINATES: protein motif:HMM:NF016974.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0018193 - peptidyl-amino acid modification
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartyl/asparaginyl beta-hydroxylase
                     domain-containing protein"
                     /protein_id="HWM61932.1"
                     /translation="MTMNPAADPKLGALVEAADRAMQAGRLEEAARGWESVLNLVPDH
                     PRALMHLGQHALYRGEPQQARHLLERAALADPANPAVALNLSFVFRALGDAAGEGAAL
                     TRALTIDPYFLPALLARAGLLERSGQVRQAAKVYKDVLTILPPHAPLDSWLAEPVAHA
                     RAMVESNRAAIADHLKPRLDAVRRSHPQADLARFEEARDVMIGARKAFLSEPTLLHYP
                     RLPAIPFYSREEFPWLEAVEKATPVIQQELAALLAAGDGDFSPYVDHPGGVPLNQWAG
                     LNRSADWSAYFPLKEGRRIADHVRQCPKTAALLQTLPLAEIPGIAPAAFFSALKPRTL
                     IPPHTGVTNTRLVVHIPLVVP"
BASE COUNT          613 a         1112 c         1042 g          646 t
ORIGIN      
        1 cacgacaata tgcttggcga tatggcgcag cgccaacgcc aggcgaataa actgaatagt
       61 gtctcccagg ccctgttcgc aatagatcag cagatcctta tccaccaggg attcaccggc
      121 ccaatcggga acgtcgggcg ccggtttctc aatccggccg atggccttgc ggaagcggag
      181 ttcgaaacct gcccacccgg tcccccaatc gcccgtcaga agctggatga gcgccaaatt
      241 ccattgggcg tcgagataat cgggccggat ctccagcgcc ttgatgccgt ctgccgtggc
      301 agcggcaatt tcgcccatct cgcgccggac agcgcatcga ttgcagtagg cctccgccag
      361 caatgggttc agggagatgg cgatatcgca gttctcaagc gcgccggcga gatcccgcaa
      421 cccgaagcgc gccgaagcgc ggttggcatg ggcttccgca taatcaggtt tattatgaat
      481 ggcggcggta aaagcatcac atgcctcttg caatttgccg gccgcaaaaa aagcattgcc
      541 gagattgttg taggcctggg cgaatgcagg cctgagctta atagccattt gatacgccgc
      601 tatggcgtcg ggatagtgcg acagatcttc aagtgcaccg ccgcggctat aatgaagatc
      661 cgcatcctgg ggagacagca aaatggcgcg atcataggcg gctatggccg cggccgcctg
      721 gccggttcgt ctcagggcat tgcccaaatt caacaacgca ttgggatatt gtgcgcgaag
      781 cgccaaggct ttttcaaact gcgcgatagc gtccgcaagc ttgctctgct tcgcaaaggc
      841 caagcccaga ttgttgtgaa cttcgggcct gtcgggactg atatttaccg catgcttcag
      901 aaatgcttcc gcggtagcgg aatcgccccg ctgcagaaat attgttccgg ccgtgtaaag
      961 cgctgggaaa ttatcgggct cttgttccaa cacacccctg catagctgca gagcttcgct
     1021 ttccctcccc ttgttaagca gcattatggc atcttgaata attctggcgg ttgctggcat
     1081 gtgagtatgc tttagccatt ctcgggtgtt ggcctggtcg acacctgctt aagctaatcc
     1141 agccctcacc gctaagtcca ttgcgccgca taggccgatt gttgtggacc ggaccgctgc
     1201 cgaatccact ggctcagcag ccatttctca ccaccggacg gcgccaggcc ggcgtggcgg
     1261 gtgcgcgggt cgcagcgtcc ggcgccatca acgttccaga accacaaggc atcgccccgc
     1321 gcgcccttga agcgccagcc cagatcgggg aaatcggtat cgcctgcctg ataatcgtcg
     1381 ttgagataaa tcaacagggt cgcgacacgc tgcccgttgc gcgcgatctc gcgcgcctgg
     1441 ggcgcaaggg acggatcgag cccgtcgcaa tggggcgcga aatattggcc cggtgcatac
     1501 tgcagcacca tggcgggctc catctcctgc atatccagtt ccatcagcgc ggcgattcgg
     1561 gcctgcagct gcaccagcac aagatcggac tgcaccatgt tgaagccggc gtcccgattg
     1621 ttacgcagcg catcgttgcg aaagcctccg tcgccggccg gatcgtacag ttcggcatcc
     1681 gtcaggcgcg tggcggcgcg cgcgatcagc cagtcgcact ccgcggggct ggcaaatttt
     1741 tcgcacgtgc cgatgcgcgg cgtctcgaac cgggtgtgcg aggcggccag tgcggcatcc
     1801 cgggcctggt ccatatgccg gaccgcgccg tcccacggcg cttcggtttg cagacccgcc
     1861 agcaaggtca gagcatccgc tgcttccgca gatccctgcc gcttggcttg ggcgagaaaa
     1921 tccagcgcct gatgccagcg cgccgggtcg tcgctggcct gaccggcgat ggcggcgcag
     1981 atgaaagaag ccttcgcgtc gccgcccatg gccgccgaca gcattatttc agcgccctcg
     2041 cgcgggcgga tgggaggctg caccatcagg ttttccgcca accggcgcag ggcattcggc
     2101 tggccggttt gcgcggcgcg cgcgaaccag ccgcgcgcca tctcgtggcg cccttcactt
     2161 tcatgccgca tggcaagcgc cagttgcgcc tgcccgtcgc cgtgggaggc gcgttcttct
     2221 atttccatgt tggcccccaa agcatggaac gctcagccag catgggccaa tatgttttgg
     2281 ctggcaacgg ttgccgtggc agggcagccg gatacactgg cagtcttgaa ggccgcagga
     2341 cccgtaccat gacgatgaac cccgcggcgg accccaagct aggcgcgctg gtcgaagcgg
     2401 ccgaccgggc gatgcaggcg ggccgcctgg aagaggcggc gcggggctgg gaaagcgtac
     2461 tgaacctcgt tcccgatcat ccccgggcac tgatgcatct gggccagcac gctttgtacc
     2521 gcggcgagcc gcaacaggcg cgccatcttc tggagcgcgc ggcgctggcc gatccggcaa
     2581 accccgcagt ggcgctcaat ctgtcttttg tctttcgcgc cctgggcgac gccgccggcg
     2641 aaggcgctgc cctgacccgg gcgctgacga tcgatcctta ttttctgccc gcccttctgg
     2701 cgcgcgccgg gctgctggaa cgcagcggtc aggtgcgcca ggcggccaaa gtttacaagg
     2761 atgtcttgac tatcctgccg cctcacgcac cgctggactc ctggctggcc gaacctgtgg
     2821 cccatgcccg cgctatggtc gaaagcaacc gcgccgccat cgccgatcat ctcaagccgc
     2881 ggctcgatgc ggtgaggcgc agccatcccc aggccgatct ggcgcgcttt gaggaagccc
     2941 gggacgtgat gatcggggcc cgcaaggcgt ttttgtctga gcctactctg ctgcattacc
     3001 cgcgcctgcc ggcaatcccc ttttattcgc gggaagaatt tccctggctg gaggcggtgg
     3061 agaaagccac ccctgtcatc cagcaggaac tggcggcgct gctggcggcg ggcgacggtg
     3121 atttttcgcc ctatgtcgat catcccggcg gggtgccgct caaccaatgg gcaggcctca
     3181 accgctcggc ggactggagc gcctatttcc ctttaaagga aggccgccga atcgccgatc
     3241 atgtccggca atgccccaaa accgccgccc tgctgcaaac cctgcccttg gccgagatac
     3301 cggggatcgc gcccgccgcc ttcttttcag ctctcaagcc ccgcaccctg atcccgcccc
     3361 ataccggggt caccaacacc aggctggtgg tccacatccc gctggtcgtg ccg
//
LOCUS       DATMDK010000378         2813 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1327123,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000378 DATMDK010000000
VERSION     DATMDK010000378.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2813)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2813)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2813
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1327123"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(92..913)
                     /gene="hpnC"
                     /locus_tag="VNN98_07260"
                     /pseudo
     CDS             complement(92..913)
                     /gene="hpnC"
                     /locus_tag="VNN98_07260"
                     /inference="COORDINATES: protein motif:HMM:TIGR03464.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0004311 - farnesyltranstransferase
                     activity [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="squalene synthase HpnC"
     gene            complement(958..2148)
                     /locus_tag="VNN98_07265"
     CDS             complement(958..2148)
                     /locus_tag="VNN98_07265"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR03469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HWM61933.1"
                     /translation="MIAGLLFGFLPLAIWLYLLLFHNGFWLLRERDTLPVSEPAAWPP
                     VVAVVPARDEAEVIQRSIGSLAAQDYPGSFRIVLVDDQSDDGTADLARGLNSERLTVL
                     TGAPRPPGWTGKLWAMKQGSDHAVAFENGSGPQPEFLWFTDADIAHNADNLRQLVARA
                     QSGDRVLVSLMVRLHCRSVAEHFLIPAFVFFFDMLLPFGAVNDPKSRTAAAAGGCMLA
                     RRSALEKAGGIEAIRHNIIDDCALGRAMKAQGPIWLGLTDRAASLRPYDHISDIRHMV
                     TRTAYAQLGYSPLVLAATLLGLGLVYLAPVMTALFAWGISQMAGWLAWIVMAVMYQPM
                     LRYYRLSPLWGPALPLIGVFYAAFTLQSAIQHWAGRGGMWKGRAQANAQKADVEANVN
                     GGPA"
     gene            complement(2145..>2813)
                     /locus_tag="VNN98_07270"
     CDS             complement(2145..>2813)
                     /locus_tag="VNN98_07270"
                     /inference="COORDINATES: protein motif:HMM:NF013530.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent epimerase/dehydratase family
                     protein"
                     /protein_id="HWM61934.1"
                     /translation="ERVVYTSSVAALKPGAAAVDETSRHTPQSVIGAYKRSKLVAERE
                     VERLVREEGLPCVIVAPSTPIGPRDVKPTPTGRVIVEAATGRMPAFVDTGLNLVHVDD
                     VAQGHLLALDKGRIGENYILGGTDVALETMLGDIAFLSGRRAPTVKIPRAPLFPLAWA
                     AEAFARVTGKEPFLTADALRMSRYRMFFSSEKAKRELGYTARPYREGLKDALTWFRDN
                     GYLA"
BASE COUNT          543 a          931 c          886 g          453 t
ORIGIN      
        1 ggcatcagcc gcatggcgat gtaaaaggaa ctgccgctgg cctttttctt gacggccttg
       61 gcggccggag cgccgatatt ttctgcgttg gtcatggcga tctctgggat gatcttgagc
      121 gagtgaggcg catcaaggcg aaggcgggaa agcgtttgag gaacaaggcg gccacgtcca
      181 tcttggaatg atgcaccggc tgggacagag gatcgcggtt catcagcaag ctattcagat
      241 cgtcggccag ggtttgaatg agatcgactt ccagcgcaag ccggccgtct tggatggcgc
      301 cggcaaaggg gcgcgcgatg tccagcagcc cggcattctt gcgcgccagg gcggaaatca
      361 ccccggccag cgccgaattg gccttgtcct ggcccagcgc ctccacccca atgccggcat
      421 ccgccagcaa aggctcgggg atatagaccc ggttcaattc gcgataatcc ttggcgcaat
      481 cctgcaggtg attgatcacc tgcagcgcgg cgcacagcgc gtcattggcg ggccacagac
      541 tttgcccctc gccatgcacg tccaacacaa accggcccac cggcatggcg ctgtagcggc
      601 aatagtcgat cagatcgtcc cagtcccgat aacgcagctt ggcgcagtcg cggcggaagg
      661 cttccagcag atccaaggca tgaaccggcg acaaaccgtg ctccgccagc acggcgcgca
      721 gcctgacgcc ttccggcacc gtatcgcttt cgcccgtcag gctggtgcgc atctgttcca
      781 gcagcgccag cttggcgtcc ggcgcggcgg cgggattgtc ggccacgtca tcggcggcgc
      841 gcacgaattt gtagaaggcc agcaccggcg ggcgatgctt gggcgcgatc aggaaagaag
      901 cgacggggaa attctcgtca ccatggccct agcccgattg gagttcggcg acactgctca
      961 tgccgggcct ccattaacat tggcctcgac atccgccttc tgggcattgg cttgggcgcg
     1021 gcctttccac atcccgcccc ggcccgccca atgctggatg gcggattgca aggtgaaggc
     1081 ggcgtagaag acgccgatca acggcagcgc cgggccccag agcggtgaca ggcgatagta
     1141 gcgcagcatc ggctggtaca tcaccgccat gacgatccag gccagccagc cggccatctg
     1201 cgagatgccc caggcgaaca gcgccgtcat caccggcgcc agataaacca gacccagccc
     1261 cagcaaggtg gcagccagca ccagaggcga atagcccagc tgggcataag cggtgcgcgt
     1321 caccatatgg cgaatgtcgg agatgtgatc gtaggggcga agcgaagcgg cgcggtccgt
     1381 aaggcccagc cagatggggc cttgcgcctt catcgcccgg ccaagggcgc agtcatcaat
     1441 gatattgtgc cggatagcct cgatcccgcc ggccttttcc agcgcactgc gccgcgccag
     1501 catgcagccg cccgccgcgg ccgcggtcct gctcttggga tcgttgaccg cgccaaaggg
     1561 gagcagcatg tcgaaaaaga acacaaaggc gggaatcagg aaatgctccg ccacgctgcg
     1621 gcaatgcagc cgcaccatca gcgacaccag caccctgtcg ccgctttgcg cgcgcgccac
     1681 cagttgccga agattgtccg cgttatgggc gatatcggca tcggtgaacc aaaggaattc
     1741 cggctgcggc ccacttccgt tttcaaaagc tacggcatga tcgctgccct gtttcatcgc
     1801 ccacagcttg cccgtccagc ccggcggacg cggcgcgccg gtcagcaccg tcaggcgctc
     1861 cgaattcagc ccccgcgcca gatcggcggt gccatcgtcc gactggtcgt ccaccagcac
     1921 gatgcggaag gaccccggat aatcctgggc ggccaaactg ccgatgctgc gctggatcac
     1981 ttcggcctca tcgcgcgcag gcaccactgc caccaccggc ggccaggcgg cgggctcgct
     2041 taccggcaaa gtatcgcgct cgcgcagcag ccagaacccg ttatggaaca acagcaggta
     2101 caaccagatc gccagcggca ggaagccgaa caagagccct gcgatcatgc cagataccca
     2161 ttgtcgcgga accaggtcag cgcatccttg aggccttcgc gatagggccg cgcggtatag
     2221 cccaattcgc gcttggcctt ttcggagctg aagaacatgc gatagcgcga catgcgcagc
     2281 gcatcggcgg tgagaaaagg ttccttgccg gtgaccctgg cgaacgcctc cgccgcccag
     2341 gccagcggaa acaggggcgc gcgcggaatt ttcaccgtcg gcgcgcggcg gcccgagaga
     2401 aaggcgatgt cgcccagcat ggtctccagc gccacgtcgg tgccgcccaa gatgtaattc
     2461 tcgccgatgc gccccttgtc caaggccagc aggtgtcctt gagccacgtc atcgacatgc
     2521 accaggttga gcccggtatc gacaaaggcc ggcatgcgcc cggtggcggc ttccacgatc
     2581 acccgccccg tgggcgtggg tttgacgtcg cgcggaccga tgggggtgga cggcgccacg
     2641 atcacgcaag gaagcccttc ctcacgtacc agacgctcga cctcgcgttc ggccaccagc
     2701 ttgctgcgct tgtaggcgcc aatcacgctt tgcggcgtgt ggcgggaggt ttcatccacc
     2761 gcggcggccc ccggcttcag ggccgcgacc gaggaagtat agaccacccg ttc
//
LOCUS       DATMDK010000379         2404 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2688717,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000379 DATMDK010000000
VERSION     DATMDK010000379.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2404)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2404)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2404
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2688717"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..280)
                     /locus_tag="VNN98_07275"
     CDS             complement(<1..280)
                     /locus_tag="VNN98_07275"
                     /inference="COORDINATES: protein motif:HMM:NF012339.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2Fe-2S iron-sulfur cluster-binding protein"
                     /protein_id="HWM61935.1"
                     /translation="MVSLQINGQSRDIDISPDTPLLWALRDVLGMTGTKFGCGIAQCG
                     ACTVHLDGQPVRSCMLAVGAIGNRKITTIEAIGETPAGAKVQKAWLDLE"
     gene            complement(441..1541)
                     /locus_tag="VNN98_07280"
     CDS             complement(441..1541)
                     /locus_tag="VNN98_07280"
                     /inference="COORDINATES: protein motif:HMM:NF023568.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HWM61936.1"
                     /translation="MARFWMLLLLLAGLAAPALAQETQTRDHSITVMSTVPVLAGQKS
                     ELYVRERALPEVLRRGAGDRIVLFVHGAGTPAEVSFDVPYQDYSWMGYLAAAGYDVFA
                     VDMTGYGRSARPAPMNDKCNLSPAQQIGFGVNCPQSYPGALTNITSDWNDISAAVAFI
                     KKLRHVEKLNLIAWSQGGPRAGGWTALHPEQVAKLILLAPAYNRATKSEAPPLPVPGP
                     VFNTQSHDEFIANWDRQAPCPGQYDPAAAASVWSEMLKSDPVGAGWSPAVRRASIASS
                     GWGWTQDRVKAMTIPTLMISGGNDKQVNPDRVRDFYADIGSPQKLFVDLGCSSHNAMW
                     EKNHLILFKASLEWLEKGTVEGQSNTMLKLGY"
     gene            complement(1657..>2404)
                     /locus_tag="VNN98_07285"
     CDS             complement(1657..>2404)
                     /locus_tag="VNN98_07285"
                     /inference="COORDINATES: protein motif:HMM:NF015431.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="LysR substrate-binding domain-containing
                     protein"
                     /protein_id="HWM61937.1"
                     /translation="LLKAHELSEKQVEGEVLLSITEGLGTYWLLPKLAEFQRPNPKLT
                     LNLRCAQIPPDLLRLEADVSVQLRRPEGADLKVMKLGYLHMMFFASQSYIDAHGCPKT
                     IPELENHRLVVLTDEGGNWENAYQKALSGILSPGLVSLRNNVSSAHFWSIVNGAGIGI
                     LPTYVKALGSNLVPLDIGEIHKHEIWLTYRSDAKRIARIRKTIDWIVQCFDPGKHPWF
                     RNDFVHPSRFAELYKGKALAGTLASPQAYR"
BASE COUNT          473 a          687 c          756 g          488 t
ORIGIN      
        1 cttccagatc gagccaggct ttttggactt tggcgccggc cggcgtttcg ccgatggctt
       61 cgatggtggt gatcttgcgg ttgccgatcg cgcccaccgc cagcatgcag gaacgcaccg
      121 gctggccgtc cagatgcacg gtgcaggcgc cgcattgggc gataccgcag ccgaatttgg
      181 tgccggtcat gcccagaaca tcgcgcaagg cccagagcag gggcgtgtca ggcgagatgt
      241 ctatgtcgcg ggattggccg ttgatctgga gcgagaccat cgtgttcccc ggattgaatt
      301 ttcagcaacg ctatcagcat ggcggcggtt tgaaaacgga aagcaaagaa aggccggcat
      361 ggcgcaccgc aaccggaaag tgccgatcgg ctggacctgg ccgccgtaaa atgtctggcc
      421 gggcaatgac ttcgccgccg ctagtagccc agtttcagca tggtgttgga ctggccctcc
      481 accgtaccct tttccagcca ttccagcgat gccttgaaca ggatcagatg gttcttttcc
      541 cacatggcgt tgtgggagga gcagcccagg tcgacgaaca atttctgcgg gctgccgata
      601 tcggcgtaga aatcgcgcac ccgatccggg ttcacctgct tgtcgttgcc gccgctgatc
      661 atcaaggtcg gtatggtcat ggccttgacg cgatcctgag tccaacccca gcccgaagag
      721 gcgatcgagg cacgccgcac cgccgggctc cagcccgcgc ccacaggatc ggatttgagc
      781 atttccgacc acaccgatgc ggcggcggct ggatcatact gaccagggca aggtgcctgg
      841 cggtcccagt tggcgatgaa ttcgtcatgg ctctgggtgt tgaacacggg gcctggcacg
      901 ggcagcggcg gcgcctcgga tttggtggcg cggttgtagg caggcgccag caggatcaac
      961 ttggccacct gctcgggatg cagggcggtc cagccgccgg cgcgcgggcc gccctgcgac
     1021 caggcgatca ggttgagttt ttccacatgc cgcagctttt tgatgaaagc caccgctgcc
     1081 gagatgtcgt tccagtccga ggtgatgttg gtcagggcgc cgggatagct ttgcgggcag
     1141 ttgacgccga agcctatctg ctgcgcgggt gacaggttgc atttgtcgtt catcggcgcg
     1201 ggccgcgccg agcggccata gccggtcatg tccaccgcga acacgtcata gccggcggcg
     1261 gcgagatagc ccatccagct gtaatcctga tagggcacgt cgaagctgac ttccgcgggt
     1321 gtgccggcgc catgcacgaa cagcacgatc ctgtcgccgg cgccccggcg caagacctct
     1381 ggtaaggcgc gctcacggac atagagttcg gatttctgcc cggcgaggac cgggacggtg
     1441 gacatcaccg tgatactgtg gtcgcgggtt tgcgtttctt gcgccagagc gggcgcggca
     1501 agcccggcca gcagcaacaa caacatccag aaacgtgcca tgctctttcc tccccttatt
     1561 ttggggggaa gtatcgtccc aatcgggcgg tggggaaagg gacgggccag gctgctggtt
     1621 ttgtgcagcg cgcaataacg taccgcgaat ggcaagtcag cggtaggcct gtgggctggc
     1681 aagtgtgcct gccagcgcct tgcctttgta cagttcggca aaacgcgacg ggtgaacaaa
     1741 atcattccgg aaccagggat gtttgcctgg atcaaaacat tgcacgatcc agtcgatcgt
     1801 ctttcgtatg cgggcgatcc gcttggcgtc cgaacgatag gtcagccaga tttcatgttt
     1861 atggatctcg ccgatatcca atggaaccag attggagcca agcgccttga cgtaagtcgg
     1921 aagaataccg attccggcgc cattgacgat ggaccagaaa tgggcgctgc tcacattgtt
     1981 gcgaagggat accagtccag gcgacaggat gccggataaa gccttttgat aggcattttc
     2041 ccaatttcct ccctcgtctg tgaggacgac gagacgatgg ttctcaagct ctgggatggt
     2101 cttcgggcat ccatgggcgt caatgtagga ttgggacgca aaaaacatca tgtgcaaata
     2161 acccagcttc atcactttca gatcggcccc ttcggggcgc cgcaattgca ctgaaacatc
     2221 cgcctccagg cgaagcagat cgggagggat ttgtgcgcat ctcaaattca gcgtcagctt
     2281 gggattgggg cgctggaatt cggccagctt gggcagaagc caataggttc ccagtccctc
     2341 tgtaatggag agcagcactt cgccttcaac ctgcttctcg gaaagttcgt gcgccttcaa
     2401 aaga
//
LOCUS       DATMDK010000380         2689 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1555330,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000380 DATMDK010000000
VERSION     DATMDK010000380.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2689)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2689)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2689
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1555330"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            203..1279
                     /locus_tag="VNN98_07290"
     CDS             203..1279
                     /locus_tag="VNN98_07290"
                     /inference="COORDINATES: protein motif:HMM:NF021603.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2336 domain-containing protein"
                     /protein_id="HWM61938.1"
                     /translation="MSDMGRLAQLAMNPQGGASREEIYLAVASLYRIQGTGLNERERE
                     LMREILRRLTRDVEMAIRIALAQRLADDTTAPHDLILLLVDDTIEVARPLILKSPLLT
                     ESDVLRLIAEAGIGHQEAVAGRPHITVPVTDALAACEHETVLLALVRNATARISSATY
                     ETLVEKSRALTGLQEPLIRRPDLPPQLASNMCEWVSDALKTYIKTNYAMASKTVEVAL
                     SQANMVLQREPAAPKDPPADSAQKLIEKLAASGQLKAGFLMRVLSQGQVDLFDLAFSR
                     LLNVELVPFRTGFYDGGARLVALACRAAGIDRSVFTTVFNLSRQGRGMSVVLTAADHA
                     AAEAVFSGFTRQSAMDELRGALAS"
     gene            1346..2098
                     /locus_tag="VNN98_07295"
     CDS             1346..2098
                     /locus_tag="VNN98_07295"
                     /EC_number="2.7.1.23"
                     /inference="COORDINATES: protein motif:HMM:NF003406.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003951 - NAD+ kinase activity [Evidence
                     IEA];
                     GO_process: GO:0006741 - NADP biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0019674 - NAD metabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD kinase"
                     /protein_id="HWM61939.1"
                     /translation="MIKLHFTAVPHAEESVTALRARYGDAGPDEADIVVALGGDGFML
                     QTLHSFTGKGKPIYGMNRGTVGFLMNEYHQDDLLERLAAAEKAVIHPLKMTAYTQSRE
                     VEARAFNEVSLLRETRQAAKLRILVDGKPRISELICDGVLVATPAGSTAYNLSAHGPI
                     LPIDADLLALTPISAFRPRRWRGALLPHRAKVRFEMLENRKRPVSAVADDFEVRDVTA
                     VDVAEDRSISMTMLYDAGHNLDERILAEQFSD"
     gene            2290..>2689
                     /locus_tag="VNN98_07300"
     CDS             2290..>2689
                     /locus_tag="VNN98_07300"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HWM61940.1"
                     /translation="MSGYRFDRLKVLVVDDNAHMRKLVTTILQAFGVIHIFEADSGDR
                     AWAILRDANPDVVVLDWVMEGLSGLELIQMIRTNSTAPNPFVPVIMLSGHTSMDHVRQ
                     ARDAGVNEFIAKPVSIKTMMSRLVAVIEHPR"
BASE COUNT          478 a          899 c          838 g          474 t
ORIGIN      
        1 cgaggtggtg ccctggtcga tggccaggag gtagggtttc tgcccgcgca tagggcaaaa
       61 gggcacatgt tttgcccccc gggcgcaaga gacttaatgt gctgttaagg gtccctttga
      121 taaatatcaa agtagaaagg ctgcaaaagg cagccgattt gcagaacgca tggggcatca
      181 cgtggggctt accgcacacg atatgagcga tatgggccgc ctggcccagc tcgccatgaa
      241 tcctcaaggc ggcgccagcc gcgaggaaat ctatctcgcg gtcgcttcgc tgtatcgcat
      301 ccagggcacc gggctgaacg agcgcgagcg cgaattgatg cgcgagatcc tgcgccgtct
      361 gacccgcgat gtggaaatgg cgatccgcat cgccctggcc cagcgcctgg ccgacgacac
      421 caccgcgccg catgacttga tcctgctgct ggtggacgac acaatcgagg tcgcccgtcc
      481 gctgatcctc aaatcccccc tgctcaccga aagcgacgtg ctgcggctga tcgccgaggc
      541 cggcatcggc catcaagaag cggtggcggg ccgtccccat atcaccgttc cggtcaccga
      601 cgcgctggcc gcttgcgaac atgaaaccgt gctgctggcc ctggtgcgca acgccaccgc
      661 ccggatttcc agcgccacct acgagaccct ggtggaaaaa tcccgtgccc tgaccgggct
      721 gcaggagccg ctgatccgcc gtcccgacct gccgccgcaa ctggccagca atatgtgcga
      781 atgggtgtcg gacgcgctga agacctacat caagaccaac tatgcgatgg cgtcaaagac
      841 agtggaagtg gcgctgtccc aggccaatat ggtgctgcaa cgcgagccgg ccgcgcccaa
      901 ggacccgccc gccgacagtg cccagaagct gatcgaaaag cttgccgcca gcggccagct
      961 caaggccggt ttcctgatgc gggtgctgag ccagggccag gtggatttgt tcgatcttgc
     1021 cttctcccgc ctgctgaacg tggaactggt acccttccgc accggtttct atgacggggg
     1081 cgcgcgcctt gtggcgctgg cctgccgcgc cgccggcatc gaccgttcgg ttttcaccac
     1141 ggtgttcaac ctgtcgcgcc aggggcgcgg catgtcggtg gttctgaccg ctgcggacca
     1201 tgcggcggcg gaggcggtct tttcgggctt cacccgccag agcgcgatgg acgagctgcg
     1261 cggcgccctc gcctcctgaa ccactttcgc catttttgcg ccctttgccc cctgtgctag
     1321 gctgctttct ccctagggcg cttccatgat caaactgcat ttcaccgccg taccgcacgc
     1381 ggaggagtcc gtcacggccc tgcgggcgcg ctatggcgat gccggtcccg atgaggccga
     1441 catcgtggtg gcgctgggcg gcgacggctt catgctgcag accctgcaca gcttcaccgg
     1501 caagggaaaa ccgatctacg gcatgaaccg cggcaccgtc ggtttcctga tgaacgaata
     1561 tcaccaggac gatctgctcg aacgcttggc cgccgccgag aaggcggtga tccatcccct
     1621 caagatgacg gcctacaccc agtcccgcga ggtggaggcc cgcgccttca acgaagtctc
     1681 gctgctgcgc gagacgcgcc aagccgccaa gctgcgcatc ctggtggacg gcaagccgcg
     1741 catctccgaa ctgatctgcg atggcgtgct ggtggccacc cctgccggct ccaccgccta
     1801 caacctctcc gcccatggcc cgatcctgcc gatcgacgcc gacctcctgg cgctgacgcc
     1861 gatttcggcc ttccgccccc ggcgctggcg tggggcgctg ctgccccacc gcgccaaggt
     1921 gcggttcgaa atgctggaaa accgcaagcg cccggtcagc gccgtggccg acgatttcga
     1981 agtgcgcgac gtcaccgctg tggacgtggc cgaggatcgc agcatctcca tgaccatgct
     2041 gtacgatgcc ggccataacc tggacgagcg catcctggca gagcaattct ccgattaacc
     2101 ccccgtccac aatcctgccc agcccacctc ccccgcgcgc gcggcagcgc gcttgcatgg
     2161 ggggaggtgg ccgtagcagc gcttgcgatg cgaaggccgg aggaggaaag cggacttcac
     2221 gaaagcttaa ggcccattaa tgtagattgt gggcaggcgc gccctatatg gggccgcacg
     2281 ggtatgggta tgagcggcta tcgtttcgac cggctgaagg ttcttgtggt ggacgacaac
     2341 gcccacatgc gcaagctcgt caccaccatc ctgcaggcct ttggcgtcat ccatatcttc
     2401 gaggcggaca gcggcgaccg cgcctgggcc atcctgcgcg atgccaatcc cgatgtggtg
     2461 gtgctggact gggtgatgga aggcctgtcg gggctggaac tgatccagat gatccgcacc
     2521 aattccaccg cccccaatcc ctttgtgccg gtgatcatgc tgagcggcca cacctcgatg
     2581 gaccatgtgc gccaggcgcg cgacgccggc gtcaacgagt tcatcgccaa gccggtctcg
     2641 atcaagacca tgatgtcgcg gctggtggcg gtgatcgagc atccccgcc
//
LOCUS       DATMDK010000381         2386 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1328291,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000381 DATMDK010000000
VERSION     DATMDK010000381.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2386)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2386)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2386
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1328291"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..334
                     /locus_tag="VNN98_07305"
     CDS             <1..334
                     /locus_tag="VNN98_07305"
                     /EC_number="1.1.1.86"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003234988.1"
                     /note="catalyzes the formation of
                     (R)-2,3-dihydroxy-3-methylbutanoate from
                     (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and
                     isoleucine biosynthesis; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ketol-acid reductoisomerase"
                     /protein_id="HWM61941.1"
                     /translation="HEVKLIVDLIYEGGIANMNYSISNTAEYGEYVTGPRIITDETKA
                     EMRRVLKDIQTGKFARDWVLENKAGQSSFKATRALGDAHQIEEVGAKLRAMMPWIAKN
                     KLVDTAKN"
     gene            415..1779
                     /locus_tag="VNN98_07310"
     CDS             415..1779
                     /locus_tag="VNN98_07310"
                     /inference="COORDINATES: protein motif:HMM:NF016289.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M28 family peptidase"
                     /protein_id="HWM61942.1"
                     /translation="MHFRGVAFGLGLCLAASAALADPQTAAALRDKALTDNTAWNLLE
                     SLTSEIGPRPAGSPAVARARDWGVAKLNALGFTNVHVEPFAKTAWLRGAESGEVVGSF
                     PHKLALLGLGNSPSTPPDGITAGVTVFKSLAELKAAPENCCAGTIVLVNQPMIRTQDV
                     TGYATAVAARSAAPEAARRGAVAYLVRSISTSTNRSPHTGAMRPPGPGMKVIPAAALG
                     VPDADLIEHLAARGPVRVHLALQSHMEDATAWTVSGDILGSDPKAGVIVIGGHLDSWD
                     PGTGAIDDGAGIAITVAAAKLVAGTHPRRTIRVVMWGSEETGGSSAAYLAAHKTDLGD
                     IVIAGESDLGADTIYSLQLPAGAWDAPDIKPLEAVLAPLKIMASSVPAEEGGSDVEDI
                     HGAGVPVLVLNQDASRYFDYHHTADDTLAIVDPVQLRQNVAAWAATLSVLADSHFDFR
                     KGGK"
     gene            1776..2258
                     /locus_tag="VNN98_07315"
     CDS             1776..2258
                     /locus_tag="VNN98_07315"
                     /inference="COORDINATES: protein motif:HMM:NF016701.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GFA family protein"
                     /protein_id="HWM61943.1"
                     /translation="MTQRPPIPPPPYTGRCLCGTVRWRLDARPLAVNACHCMDCKKST
                     GATNVLMLLARNQDFSVSGETQVYRKRADSGRELDISRCAKCGTRLFHHNLASTALVF
                     ITAGTLDDPSWAVPTSHIWVEKISPGVVMQDDAIKVVGQPGDRQILMDAFAKVYGDGA
                     "
BASE COUNT          421 a          781 c          778 g          406 t
ORIGIN      
        1 gcacgaagtg aagctgatcg tcgacctgat ctatgaaggc ggcatcgcca acatgaatta
       61 ctccatctcc aacaccgccg aatatggcga gtatgtcacc ggcccgcgca tcatcaccga
      121 cgagaccaag gcggaaatgc gccgcgtgct gaaagacatc cagaccggca agttcgcccg
      181 cgactgggtg ctggagaaca aggccggcca atcttctttc aaggccaccc gcgccctggg
      241 cgacgcccac cagatcgagg aagtgggcgc aaaattgcgc gccatgatgc cctggattgc
      301 gaagaataag ctggtggaca cggcgaaaaa ttaggcgccg gtcagggttg ccaaaaacag
      361 gctggtggcc ggcctacagg cctgattagc ttctccccag caggggagag tctgatgcat
      421 tttcgcggcg ttgcgtttgg tttgggtctt tgtcttgcgg cgtcggcggc cttggccgac
      481 ccgcaaacgg ccgccgccct gcgcgacaag gctctgaccg acaacaccgc ctggaacctg
      541 ctggaatccc tgaccagtga gatcgggccg cgtcccgccg gcagccccgc cgtggcgcgg
      601 gcccgcgact ggggcgtggc caagctgaat gccctgggtt tcaccaatgt ccatgtcgag
      661 ccctttgcca aaaccgcctg gctgcgcggg gcggaatccg gcgaagtggt ggggtcattc
      721 ccgcacaaac tggctctgct ggggctgggc aatagcccgt ccaccccgcc ggacggcatc
      781 accgccggcg tgacggtgtt caaaagcttg gccgaactca aggccgcgcc tgagaattgc
      841 tgcgccggca cgatcgtgct ggtgaaccag cccatgatcc gcacccagga cgtcaccggc
      901 tatgccaccg cagtcgcggc gcgctcggct gcgccagagg cggccaggcg cggcgcggtt
      961 gcctatctgg tgcgctccat ctccacctcg accaaccgca gcccgcacac cggcgccatg
     1021 cggccgccgg ggccgggcat gaaagtcatt cccgccgccg cgctgggcgt gcccgacgcc
     1081 gacctgatcg agcatttggc ggcgcgcgga ccggtacggg tgcatctggc gctgcaatcc
     1141 cacatggaag acgccaccgc ctggacggtc tccggcgaca ttctgggcag cgatcccaag
     1201 gccggcgtca tcgtgatcgg tggccatctc gacagctggg atcccggcac cggcgccatt
     1261 gacgatggcg cgggcatcgc catcaccgtg gccgccgcca agctggttgc ggggacccat
     1321 ccccggcgca ccatccgcgt ggtgatgtgg ggatcggagg agaccggcgg ctccagcgcc
     1381 gcctatctcg ccgcacacaa gacggacctg ggcgatatcg taatcgcggg cgagagcgat
     1441 ctgggcgccg acactatcta cagcctccag cttcctgccg gggcctggga tgcgcccgac
     1501 atcaagccgc tggaggcagt cctggcgccg ctgaagatca tggcctcttc tgtgccggcc
     1561 gaagagggcg gctcggatgt ggaggatatt cacggcgcgg gtgtgccggt gctcgtgctg
     1621 aatcaggatg ccagccgcta tttcgactat caccacacgg cggacgacac tttggcgatc
     1681 gtggacccgg tgcagctgcg ccagaatgtg gcggcctggg cggcgacgct gagcgttttg
     1741 gccgacagcc atttcgattt ccgcaaaggt ggcaagtgac gcagcgtcca ccgattccgc
     1801 cgccgcccta taccggcaga tgtctctgcg ggacggtgcg ctggcggctg gatgcccgcc
     1861 cgctggcggt taatgcctgc cattgcatgg actgcaagaa aagcaccggc gccaccaatg
     1921 tcttgatgct gcttgcccgc aaccaggatt tttccgtcag cggcgaaacc caggtctacc
     1981 gcaagcgcgc cgattccggc cgcgaactgg atatcagccg ttgcgccaag tgcggcacgc
     2041 gcctgttcca ccacaatctg gcctccaccg cgctggtctt catcacggca ggcaccttgg
     2101 atgatccgtc ctgggcggtt ccaacctccc atatctgggt cgaaaagatt tcgccgggtg
     2161 tggtgatgca ggacgacgcc atcaaggtgg tgggccagcc cggcgaccgc cagattttga
     2221 tggatgcctt cgccaaagtg tatggcgacg gcgcatgacg cttggcacgc cgctgtcgcc
     2281 cgccgccgtc cgggtgatgc tgctgggctc gggcgagttg ggcaaggaag tcatcatcga
     2341 gctgcagcgg ctgggcgtgg aaaccattgc ggtggaccgt tacgcc
//
LOCUS       DATMDK010000382         2343 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1330154,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000382 DATMDK010000000
VERSION     DATMDK010000382.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2343)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2343)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2343
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1330154"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..421)
                     /locus_tag="VNN98_07320"
     CDS             complement(<1..421)
                     /locus_tag="VNN98_07320"
                     /inference="COORDINATES: protein motif:HMM:NF012692.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ROK family protein"
                     /protein_id="HWM61944.1"
                     /translation="MRFGIDLGGTKTEIVALAADGGVALRRRVPTPKDYDSLLRAVAE
                     LVTGAEAELGRRGTVGMAIPGSESFGSNLIKNANTTYLIGKPLRRDLETALERPVRLA
                     NDANCFALSEASDGAAAGAGTVFGVIAGTGVGGGVVID"
     gene            complement(421..684)
                     /locus_tag="VNN98_07325"
     CDS             complement(421..684)
                     /locus_tag="VNN98_07325"
                     /inference="COORDINATES: protein motif:HMM:NF023518.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3572 domain-containing protein"
                     /protein_id="HWM61945.1"
                     /translation="MTPENAEILALEGLGWLAGEEDGIQRFQAQSGIEAAALRDAAGS
                     PEIGVAILDFLLGNEDLLLRFCESASLSPKELHLARHRLGGEV"
     gene            799..1173
                     /locus_tag="VNN98_07330"
     CDS             799..1173
                     /locus_tag="VNN98_07330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008260440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HWM61946.1"
                     /translation="MDAKTKTVLIVEDNELNMKLFHELLDAHGYNILQTKDGMEALDI
                     AREHHPDLILMDIQLPEVSGLEVTKWLKEDDSLKGIPVVAVTAFAMKGDEDVIRQGGC
                     EAYISKPISVTSFLETVRRFIG"
     gene            1180..>2343
                     /locus_tag="VNN98_07335"
     CDS             1180..>2343
                     /locus_tag="VNN98_07335"
                     /inference="COORDINATES: protein motif:HMM:NF007135.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PleD family two-component system response
                     regulator"
                     /protein_id="HWM61947.1"
                     /translation="MTARVLVVDDILSNVKLLEAKLSAEYFEVITAFNGLECLSKMEA
                     GAPDIVLLDVMMPGMDGFEVCRRIKSNPKTAHVPVVMVTALDQPSDRVAGLDAGADDF
                     LTKPVDDAALFARVRSLVRLKMMTDELRMRESTGQGMGLIDPAMTFTENNPAGRILVI
                     EDRAESVAWFSSALAPTHEIASADTFEEALVRVKGGDFDLIVVSLGMRGFDGLRLCSQ
                     LRSLPEGRHVPILVVVSDGDRRKLTQALEMGVNDYLTRPVDKNELVARVRTQLRKKRY
                     ADRLRHNVQLSLEMAITDQLTGLHNRRYMSRHLDTLIAGAQKNGRPLAFVIMDIDFFK
                     RVNDTHGHDIGDEVLKEFAARINANVRGIDLACRYGGEEFVVAMPDTDITFATN"
BASE COUNT          460 a          769 c          692 g          422 t
ORIGIN      
        1 cgtcgatcac cacaccgccg cccacgccgg tgccggcaat gacgccgaag acagtccccg
       61 cgcccgccgc ggcgccgtcg ctggcttccg acaaggcaaa acaattggcg tcattggcca
      121 ggcgcacagg ccgctccagc gccgtctcaa gatcccgccg cagcggtttg ccgatgagat
      181 aagtcgtatt ggcattcttg atcagattgc tgccgaaact ttcgctgccg gggatcgcca
      241 tgccgaccgt gccgcgccgg cccagttccg cctccgcccc cgtcacaagt tccgccaccg
      301 cccgcagcag cgagtcgtaa tccttgggcg tgggaactct gcggcgcagc gccacgccgc
      361 catctgccgc cagcgccacg atttcggtct tggtgccgcc cagatctatg ccgaaacgca
      421 tcagacttct ccgccaagcc gatgccgcgc caggtgtaac tctttgggcg aaagtgaggc
      481 gctttcgcaa aagcgcagca gcaagtcctc atttcccagc agaaagtcga gaatcgccac
      541 gcctatctcc gggctgccgg cagcatcgcg caaagcggcg gcctcgattc ccgactgggc
      601 ctggaagcgc tggatgccgt cttcctcccc ggccagccag ccaaggcctt ccaaagcaag
      661 gatttcggcg ttttcggggg tcatggagcg ggcatcgtca agggagcgtt aagacataat
      721 ccctaatact ggtcaaaaca gccagagctc ctttcgggcg ctgggacttg gcgcggacct
      781 gcgccggaga gcaaagccat ggacgccaaa accaaaacgg tcctgatcgt ggaggacaat
      841 gagctcaaca tgaagctctt ccacgaactg ctggacgccc atggctacaa tatcctgcag
      901 accaaggacg gcatggaagc gctggacatc gcccgcgaac accaccccga cctgatcttg
      961 atggacatcc agctgccgga agtcagcggc ttggaagtca ccaagtggct gaaggaagat
     1021 gattccctca agggcattcc tgtcgtcgcg gtcaccgcct tcgccatgaa gggcgacgag
     1081 gacgtcattc gccagggcgg atgcgaggcc tatatctcca aacccatttc ggtgaccagc
     1141 tttttggaaa ccgtgcggcg cttcatcggg taacattcca tgacggcccg cgtcctcgtc
     1201 gtcgatgaca ttctttccaa cgtcaagctt ctggaagcga agctgtcggc ggaatatttc
     1261 gaggtcatca cagctttcaa cgggttggag tgcctctcca agatggaggc gggcgccccc
     1321 gacatcgtgc tgctggacgt gatgatgccc ggcatggacg gtttcgaagt ctgccgccgc
     1381 atcaaatcca atcccaagac cgcccatgtt ccggtggtga tggtgaccgc gctggatcag
     1441 cccagcgacc gggttgccgg cctggatgcc ggcgccgacg atttcctcac caagccggtg
     1501 gacgatgccg ccttgttcgc ccgggtgcgt tcgctggtgc gcttgaagat gatgaccgac
     1561 gaattgcgga tgcgcgaatc gaccggccag ggcatgggcc tgatcgatcc cgccatgacc
     1621 ttcaccgaga acaatcccgc ggggcgcatc ctggtcatcg aggaccgcgc cgaatccgtg
     1681 gcctggttca gcagcgccct ggcgcccacc catgaaatcg cctccgccga cacctttgaa
     1741 gaagcgctgg tgcgggtgaa gggcggcgac ttcgacctga tcgtggtgtc gctgggcatg
     1801 cgcggctttg acggattgcg cctgtgctcg cagctgcgct ccctgccgga ggggcgtcac
     1861 gttcccattc tggtcgtggt cagcgatggc gaccgccgca agctgaccca ggcgctggaa
     1921 atgggcgtca acgattacct gacccgtccg gtggacaaga acgaactggt ggctcgcgtc
     1981 cgcacccagc tgcgcaagaa gcgctatgcc gaccggctgc gccacaatgt ccagctcagc
     2041 ctggaaatgg cgatcaccga ccagctcacc ggcctgcaca atcgccgcta tatgagccgc
     2101 catctcgata cgctgatagc cggcgcccag aagaatggcc gcccgctggc cttcgtcatc
     2161 atggacatcg acttcttcaa gcgggtcaac gacacccatg gccacgacat cggcgacgaa
     2221 gtgctgaagg aattcgccgc ccgcatcaat gccaatgtgc gcggcatcga cctggcctgc
     2281 cgttatggcg gcgaggaatt cgtggttgcc atgcccgata ccgacatcac tttcgccacc
     2341 aat
//
LOCUS       DATMDK010000383         2442 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_408739,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000383 DATMDK010000000
VERSION     DATMDK010000383.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2442)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2442)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2442
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_408739"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..682)
                     /locus_tag="VNN98_07340"
     CDS             complement(<1..682)
                     /locus_tag="VNN98_07340"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61948.1"
                     /translation="MTADVVRPLGSAQDSKARDAMLPFLAMLAALMLYSVLRALLLAT
                     AQSTALPCLALDAAALAGAVALARVRYADIPVLMHPLMRGIGLVVFVQVVFDSAALFY
                     GPAEFVTGRNGLFFEGGAAIALVSGALGLWRPSFLVPLFFHYVAFRHQIGVITGVDIS
                     KTDYLSMLDIGNFLTVGAFVVIVLAQPMAARLLPASVDGNWLRDRAAGLIWACAVGAH
                     LGNYFVSGW"
     gene            899..2275
                     /locus_tag="VNN98_07345"
     CDS             899..2275
                     /locus_tag="VNN98_07345"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61949.1"
                     /translation="MELDVGRTPALNPHIAARFVGALTGMRVGLRESLARRPFLKNVS
                     IMLTGAALGQSVSILLSPVLTRVFSPQQFGILSVYTAILSIIVVMASLRYEMTLPLAA
                     CDEDAINLAAVCGCALVATTAVLALAAFTFPISWARLIWPTALSARRVHIYSGMLVLG
                     FFCLGAYYIVLYMATRQGAYRAIANTRVGQGVVGPLSQIGMGLAHLGGHGLVLGSIIG
                     QSAGTFGLLRKVLQGRDDLLKAVSWRRMTALAARYRRFPLIASWAALLDLAGGNQLLY
                     LLVSVQFSPRIAGFIFLAERIVARPLAIVGTSILQVFLGEAGKTVSSDPAKLKSRFYQ
                     VTTRQFGLALVWIVTANLLAAALFPLAFGAKWSEGVVYLQAMSLGYLIQAVVLPVFHT
                     LQIMEKQALAAIWQVGRLVTVTAGFALCVQLNVSAPWTIFCYSATQAASCLVLFALIA
                     KSIQELQR"
BASE COUNT          420 a          784 c          774 g          464 t
ORIGIN      
        1 tccagcccga gacgaaataa tttcccagat gcgcgccgac ggcgcaggcc cagatcaagc
       61 cggcggcacg gtcgcgcagc cagttgccat ccacgcttgc cggcagcagc cgcgccgcca
      121 tcggctgcgc caggacgatc acaacgaacg cccccaccgt cagaaagttg ccgatatcca
      181 gcatgctgag ataatcggtt ttggaaatgt cgacgccggt gatgacgcca atctggtggc
      241 ggaaagcgac atagtgaaag aacagcggca ccaggaagct gggccgccac agccccagcg
      301 cgccggacac cagcgcgatc gccgcgccgc cctcgaagaa caggccattg cggcctgtca
      361 cgaattccgc cggtccataa aacagcgccg cgctgtcgaa aaccacctgc acgaatacca
      421 ccaggccgat gccgcgcatc aggggatgca tcaggacagg gatgtccgca tagcggacgc
      481 gcgccagcgc tacggcgccc gcaagggcgg cggcatccag cgccagacaa ggcagcgcgg
      541 tgctttgcgc cgtcgccagc aatagcgccc gcaagacact gtagagcatc agtgccgcca
      601 gcattgccag gaacggcagc atggcatcgc gtgccttgct gtcctgcgcg cttcccagag
      661 gccgcacgac gtctgcggtc atgctcatcg gacatccgtc ctttgctaca tcggcccttg
      721 agatcggttc ttggagccgg agacccgcgg gaaccgctgg cgaatttttt tagtccattt
      781 ccgctccctc gcgcgtgaca tcgctgtgac ccggcatttg agcgctgcac ggccccaaaa
      841 agccggtgat actgggcaat catgggggaa ctggccgcgt cggcattgtg aggaaaaatt
      901 ggaactggac gtggggcgca cgcctgctct caacccgcac atcgcagccc gctttgtcgg
      961 cgccctgacc ggcatgcggg tgggcctgcg ggaatcgctg gcgcggcggc cttttttgaa
     1021 gaatgtttcg atcatgctga ccggcgcggc gctgggacag tcggtcagca tcctgctttc
     1081 gcccgtgctg acgcgggttt tttcgcccca gcagttcggc attctcagcg tctataccgc
     1141 catactctcc atcatcgtgg tgatggcatc gctgcgctat gagatgacat tgccgctggc
     1201 cgcttgcgat gaggacgcga tcaacctggc ggcggtgtgc ggctgcgcgc tggtggcgac
     1261 gactgctgta ctggcgctgg ccgccttcac ctttcccata tcctgggcgc ggctgatctg
     1321 gcccacggcg ctgagcgcca ggcgggtgca tatttacagc ggcatgctgg tgctgggctt
     1381 cttctgcctg ggggcctatt acatcgtgct ctatatggcg acacgccagg gggcctaccg
     1441 tgccatcgcc aacacccgcg tcggacaggg cgtggtcggg ccgctgtccc agatcggcat
     1501 gggactggcg cacctgggcg gacatggcct ggtgctgggt tcgatcatcg gtcaatcggc
     1561 cggcaccttt ggattgctgc gcaaagtgct gcaggggcgc gatgacctgc tgaaggcggt
     1621 gtcctggcgc aggatgacgg cgctggcggc gcgctatcgc cgctttcccc tgatcgccag
     1681 ctgggcggcg ctgcttgatc tggcgggcgg caaccagctt ctctacctgc tggtgtcggt
     1741 gcaattttcc ccccgcatcg ccggattcat tttcctggcc gagcgcatcg tggcgcggcc
     1801 gttggcgatc gtgggaactt cgatcctgca agtctttctg ggtgaggcag gcaagaccgt
     1861 ttccagcgac cccgccaagc tcaagtcgcg cttttatcaa gtgacgacgc ggcaattcgg
     1921 ccttgcgctg gtctggatcg tgacggcaaa cctgctggcg gcggcgctgt ttccgcttgc
     1981 cttcggcgcg aaatggagcg agggggtggt ctatctccag gccatgagcc tgggctatct
     2041 gatccaggcg gtggtgctgc cggtgttcca caccttgcag atcatggaaa aacaggcact
     2101 ggccgcgatc tggcaagtcg gccggctggt gactgtgacg gcgggcttcg cgctttgcgt
     2161 gcagctgaat gtttccgcgc cctggaccat cttctgctac agcgccaccc aggctgccag
     2221 ctgcctggtg ctgttcgcgc tgatcgccaa atccattcag gagctgcagc gatgaaacat
     2281 gtccgaaaaa cctgcgccat tctgctgctc agcgtccagc cggcgctggc ggcacccttc
     2341 tgcgtggaga ataccggcct gccgccgcaa tgcctatatg tcgatcccgg ccaatgccag
     2401 gccgaagccg accggatcaa tggacgctgc accgccaacg ct
//
LOCUS       DATMDK010000384         5468 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_3397844,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000384 DATMDK010000000
VERSION     DATMDK010000384.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 5468)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5468)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5468
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3397844"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..847
                     /locus_tag="VNN98_07350"
     CDS             <1..847
                     /locus_tag="VNN98_07350"
                     /EC_number="1.2.1.11"
                     /inference="COORDINATES: protein motif:HMM:NF011456.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004073 - aspartate-semialdehyde
                     dehydrogenase activity [Evidence IEA];
                     GO_function: GO:0016620 - oxidoreductase activity, acting
                     on the aldehyde or oxo group of donors, NAD or NADP as
                     acceptor [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_process: GO:0008652 - amino acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="aspartate-semialdehyde dehydrogenase"
                     /protein_id="HWM61950.1"
                     /translation="TVETLTDDAFAGVDIALFSAGGGISRHYAPVAVKAGAVVVDNSS
                     AFRTDPAVPLVVPEINARRIADHKGIIANPNCAAITTLVPLWPVHRVNPVRRLIVSTY
                     QAASGGGAALMEELELSTRAYLDGKDYAPKVVKYPYAFNLFSHNTAIDMATGYNDEES
                     KVIKETKKIFEDERIAVSATCIRVPVLRAHSVSMTFECERAITPDEVRGLLEKAPGVR
                     IVDDWANNYFPMPKDASGQGDVLAGRIRTDLSDLSGKSISMFVAADQLLKGAALNAVQ
                     IAELL"
     gene            complement(954..1658)
                     /locus_tag="VNN98_07355"
     CDS             complement(954..1658)
                     /locus_tag="VNN98_07355"
                     /inference="COORDINATES: protein motif:HMM:TIGR02396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="COQ9 family protein"
                     /protein_id="HWM61951.1"
                     /translation="MSDTPKKPAKKKPTAKAETQSEPPGRSDQQMREAVLAAALPHAA
                     FDGFTDSVLQKAGTEAGVTKPDLARLFENGPISLIEFYSAWADAEMEQRLAATDLKAM
                     KIRERIATAVKTRLAVLKPQKEAARRAAALLSLPMHAALGAKLLYRTVDAMWRAAGDT
                     STDFNFYTKRGILAGVYGSTAIRWFNDTSSDEKPTEDFLAARIENVMQFEKFKAKAKD
                     ALSNFPAFADWAKPKK"
     gene            complement(1663..2211)
                     /gene="def"
                     /locus_tag="VNN98_07360"
     CDS             complement(1663..2211)
                     /gene="def"
                     /locus_tag="VNN98_07360"
                     /EC_number="3.5.1.88"
                     /inference="COORDINATES: protein motif:HMM:NF001159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042586 - peptide deformylase activity
                     [Evidence IEA];
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide deformylase"
                     /protein_id="HWM61952.1"
                     /translation="MALLKIARMGHPILATPAHMVSDPKSPEIRRLINDMVETMMDAN
                     GAGLAAPQVHVPLRVVVFQAPDDRADPDRCEEERFDHTAPLTVLINPEIEVLDLSPEG
                     GWEGCLSVPGLRGWVARPAHIRYRGFGIDGETIERVARGFHARVVQHECDHLDGRLYT
                     SRMDDLSRLIFESEIRHFQVAG"
     gene            2337..2549
                     /gene="rpsU"
                     /locus_tag="VNN98_07365"
     CDS             2337..2549
                     /gene="rpsU"
                     /locus_tag="VNN98_07365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020041874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S21"
                     /protein_id="HWM61953.1"
                     /translation="MQIIVRDNNIDQALKALKKKMQREGIFREMKLRGAYEKPSEKRA
                     RERAEAVRRYRKLQRKRLQREGLLPR"
     gene            complement(2546..2758)
                     /locus_tag="VNN98_07370"
     CDS             complement(2546..2758)
                     /locus_tag="VNN98_07370"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61954.1"
                     /translation="MRWFRKKKIAEDLKTVTEVAGDQIAPGAGTFLLVLAGVAAGAAA
                     AYVVSQRRQKKKAASRAALPKSDKAP"
     gene            complement(2942..3997)
                     /gene="dmeF"
                     /locus_tag="VNN98_07375"
     CDS             complement(2942..3997)
                     /gene="dmeF"
                     /locus_tag="VNN98_07375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017980771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008324 - monoatomic cation transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006812 - monoatomic cation transport
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CDF family Co(II)/Ni(II) efflux transporter
                     DmeF"
                     /protein_id="HWM61955.1"
                     /translation="MAHDHTLHSHDHDHGHDHGHGHGHSHDHGRIHIESGTEFGAGPH
                     DHGIWTRDHVFLGSGHSSAETRAKWAAIITAVFMCVEIAAGFTYHSMALLADGAHMAT
                     HVGALGLAAGAYWLARRHAGSGRFTFGSGKFGDLAAFSSAIILGITALVVAVESLQRI
                     LAPVAVQYGDALLIACVGLAVNLISALILKDSHSHDHGHHGHDHGHGQDNNMRAAYVH
                     VLADAATSVLAIVALACGYYFGLRILDPISGLVGAFVIASWSYGLIRDSAMVLLDADA
                     DPKQSDEIRAFLEGELKARIPDLHLWRLGPGHRGLIVSLISPDAISAEAVKDTLRRRY
                     PDLSHVTVEVAVCADCT"
     gene            complement(4216..>5468)
                     /locus_tag="VNN98_07380"
     CDS             complement(4216..>5468)
                     /locus_tag="VNN98_07380"
                     /inference="COORDINATES: protein motif:HMM:NF019157.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="tannase/feruloyl esterase family alpha/beta
                     hydrolase"
                     /protein_id="HWM61956.1"
                     /translation="LSGYATMSTDNGHVDGANGEHGLSWAYKHPEKMVDWAGRALHLS
                     TIAAKKTVAAFYGKPAGKNYFISCSAGSHHAIMEATRFPPDYDGMVGGAAPWKWTALM
                     FGHTWNSMPAMKDQSALTAQSVAILNRGMIKACDKLDGLEDGVIADPRRCTVDPVQFQ
                     CSDSNKIECLTPVQVAAARHIYAGATKSDGTRLMPGQVRGGELGWLAQSGGATPGGSS
                     WDFWRQAVFQDPDFKNVNFDFDKDTERALATKLSGSTLAEVYDEKPNLDGFKARGGKF
                     IFFQGWADPVITPLMDVDFYNRIVARYGQAATDTFFRFFLLPGMGHCSGGAGFSHIGG
                     ATGAPIKDDPDHDMVEALERWVTKDEAPSLFIAAHVNDAKQVTATRPICRYPLEAQYV
                     DRGDTGNAANFICHVPEAFAPQPM"
BASE COUNT         1021 a         1704 c         1735 g         1008 t
ORIGIN      
        1 gacggtcgag acgctgaccg acgacgcctt tgcaggcgtg gacatagccc tgttctcggc
       61 cggcggcggc atctcccggc actatgcgcc cgtcgcggtg aaagccggcg ccgtggtggt
      121 ggacaattcc tccgccttcc gcaccgatcc cgccgtcccg ctggtggtgc cggaaatcaa
      181 tgcgcgccgc atcgcggacc acaaaggcat catcgccaac cccaactgcg ccgcgatcac
      241 caccctggtg ccgctatggc cggtgcatcg ggtcaatccg gtgcggcgat tgattgtctc
      301 cacctatcag gcggcgtcgg gcggcggcgc ggccctgatg gaggagctgg agctttccac
      361 ccgcgcttat ctggacggca aggactatgc gcccaaggtg gtgaagtatc cctatgcctt
      421 caatctcttc agccacaaca ccgctatcga catggccacg ggctataacg atgaagagag
      481 caaggtcatc aaggagacca agaaaatttt cgaagacgag cggatcgcgg tcagcgccac
      541 ctgcatccgc gtgccggtgc tgcgcgctca ttcggtgtcg atgaccttcg agtgcgagcg
      601 ggccattacg ccggacgagg tgcgtgggct gctggagaaa gcaccaggcg tgcgcatcgt
      661 ggacgactgg gcgaacaatt atttccccat gcccaaggac gcgtcggggc agggcgacgt
      721 gctggccgga cgcatccgca cagatctgtc cgatctatcc ggcaagtcca tcagcatgtt
      781 cgtagcggcg gatcagcttt tgaaaggcgc ggcgctgaac gcggtgcaga tagcggagtt
      841 gctgtaattt tcctgtcatg cccgcgaaag cgggcatcca actttccatc cggcggcaat
      901 tgctcgaagt tggattcccg cttacgcggg aatgacaatg gttgggccgg tggttatttt
      961 ttcggtttcg cccaatcggc aaaagccgga aagttggaca gcgcgtcctt ggccttggcc
     1021 ttgaacttct cgaactgcat gacgttttcg atacgggcgg cgaggaagtc ttcggtgggt
     1081 ttctcgtcgc tactggtgtc gttgaaccag cgtatggcgg tggaaccata gaccccggcc
     1141 aggatgccgc gcttggtgta gaaattgaaa tcggtggagg tgtcgccggc cgcccgccac
     1201 atcgcatcca ccgtacggta gagcagcttg gcgcccagcg ccgcatgcat gggcagcgac
     1261 aacagcgccg ccgcgcgccg tgccgcttcc ttctggggct tgaggaccgc cagccgggtc
     1321 ttgacggcgg tagcgatgcg ctcgcggatc ttcatggctt tgaggtcggt tgccgccagg
     1381 cgctgttcca tctccgcatc cgcccaggcg gaataaaatt cgatcaggct gatggggccg
     1441 ttctcgaaca gccgcgccag gtcgggcttt gtgacgcccg cttccgtgcc ggccttctgc
     1501 agtaccgaat cggtaaagcc gtcaaaggcg gcatggggca gggcggcggc cagcaccgct
     1561 tcacgcatct gctggtcgct cctgcccggg ggttcagact gggtttcggc tttcgccgtt
     1621 ggtttctttt tggcgggctt cttgggggtg tcgctcatgg ccttagcctg ctacctgaaa
     1681 gtgacggatc tcggactcga aaatcagccg cgaaagatca tccatccgcg aggtgtaaag
     1741 ccgcccgtcc aggtgatcgc attcatgctg caccacgcgc gcatgaaagc cgcgcgccac
     1801 ccgttcgatg gtttcgccgt cgatgccaaa gccgcgatag cggatatggg cgggacgcgc
     1861 gacccagccg cgcagtcccg gcaccgacag gcagccttcc cagccgcctt cggggctaag
     1921 gtccaggacc tcgatttcgg ggttgatcag cacggtcagg ggggcggtgt ggtcgaaccg
     1981 ctcctcctcg caccgatccg gatcggcccg gtcgtccggg gcctggaaca ccaccacccg
     2041 caggggaaca tgaacctgag gggcggccaa accggccccg ttggcgtcca tcatggtttc
     2101 caccatgtca ttgattaggc ggcggatttc cggacttttg gggtcggaga ccatatgggc
     2161 cggggtggcc aggatggggt ggcccatgcg ggcgattttg aggagtgcca tacccggaaa
     2221 tatggccccg ccggcggacc cggccaaggc ctgaaatcgt taaaccccgc gggtagacag
     2281 ggaaaatgcc gtctgctatc acccgcgcct cttaattttc gcaccggagc caggctttgc
     2341 agatcatcgt ccgcgacaac aacatcgacc aggcgctgaa ggcgctgaag aagaagatgc
     2401 agcgcgaagg catcttccgg gagatgaagc tgcgcggcgc ctatgagaag cccagcgaaa
     2461 agcgcgcccg cgagcgcgcc gaggccgtgc gccgttaccg caagctgcag cgcaagcgcc
     2521 tgcagcgcga aggcttgctg ccgcgctaag gggctttatc ggatttcgga agggccgccc
     2581 ttgaggcggc ctttttcttt tgacggcgct ggctgaccac ataggccgcc gccgcacctg
     2641 ccgcgacgcc cgccagcacc agcaggaagg tgcccgcccc cggcgcgatc tgatcgcccg
     2701 cgacctcagt gacggttttc aagtcttcgg cgatcttctt tttacgaaac cagcgcatcg
     2761 tctttgtgtc cgcgcaaggt gcggaacagc aaggttgcgc ccgccagaat gccgcccagc
     2821 acgatgccgc ctaccagcag cacgagcccg cccccgtcga ccgagcttaa tcctgcgagg
     2881 gttctgcccg tgtcatctcc ggcctcggag gtaccttcgc gatcccacat cgaaatctct
     2941 ttcatgtgca gtcggcgcag accgccactt ccaccgtgac atgggagagg tcgggatagc
     3001 ggcggcgcag ggtgtctttg acggcttcgg cgctgatcgc gtcgggtgag atcagcgaaa
     3061 cgatcaagcc gcgatggccg gggcccagac gccacagatg caggtcggga atgcgcgcct
     3121 tgagttcgcc ttccagaaag gcgcgaattt catcggattg cttgggatcg gcgtcggcgt
     3181 ccagcagcac catggcgctg tcgcggatca ggccatagga ccaggaagca atgacgaagg
     3241 cgcccaccaa cccgctgatg gggtccagga tcctcagccc gaaataataa ccacaggcca
     3301 gcgccacgat cgccagcacg ctggtggcgg cgtcggccag cacatgcaca taggccgcgc
     3361 gcatattatt gtcttggcca tggccgtggt catggccgtg atggccatgg tcatgcgaat
     3421 gactgtcttt gagaatcagg gcgctgatca ggttgaccgc cagcccgacg caggcgatca
     3481 gcagcgcgtc gccatactgg acggcgacgg gggccaggat gcgctggagg gattccaccg
     3541 ccaccaccag cgcggtgatg cctaagatga tggcgctgga aaaggccgcc agatcgccga
     3601 acttgcccga tccaaaagtg aagcggccgc tgccggcatg acgccgcgcc agccaatagg
     3661 cgcccgccgc caggcccagc gccccgacat gggtcgccat atgcgcgccg tctgccaaga
     3721 gcgccatgga gtgataggta aagccggctg cgatctccac gcacatgaag acggcggtga
     3781 tgatggcggc ccatttggcg cgcgtctcgg cgctggaatg gccgctcccc agaaagacgt
     3841 gatcgcgcgt ccagatgcca tggtcatgcg ggcctgcgcc aaactctgtg ccagactcta
     3901 tgtgaatgcg cccatgatca tggctgtgac catgaccgtg tccgtggtcg tgcccatgat
     3961 catgatcgtg cgaatgcaag gtgtggtcgt gcgccatggc ggcagtttag cgcggcgggc
     4021 gccaaaaatc ccccaggaat tccccaagaa gccctaagcg attgcgccca ggaacggcag
     4081 catgaggctg gccgcgagca acgcgcccac cagcaaaagc cggggatttc taacagggcg
     4141 tccataaatc atcatgagcg gcaaataggc tgctttgccc gctttgcaag cccgtcaaaa
     4201 ggccgcgcga tttgtttaca tcggctgtgg cgcaaaggcc tcagggacgt ggcagatgaa
     4261 attggcggca ttgccggtgt cgccacggtc aacatactgc gcttccagcg gatagcggca
     4321 gatcgggcgc gtggcggtga cctgctttgc gtcattcaca tgggctgcga taaacagcga
     4381 gggtgcttca tccttggtca cccagcgctc cagcgcctcg accatatcgt gatcggggtc
     4441 gtccttgatg ggtgcgccgg tggcgccgcc gatgtgcgaa aagccggcgc cgcccgaaca
     4501 atggcccatc cccggcagca ggaagaagcg gaagaaggta tcggtcgccg cctggccgta
     4561 gcgggcgacg atgcggttat aaaaatccac gtccatcaac ggcgtgatca ccggatcggc
     4621 ccagccctgg aagaaaatga acttgccgcc gcgcgccttg aagccatcga ggttcggctt
     4681 ctcgtcgtaa acttccgcaa gtgtcgagcc cgacagtttt gtggcaagcg cccgctccgt
     4741 atccttgtcg aaatcgaaat tcacattctt gaaatccgga tcctgaaaaa cggcctgacg
     4801 ccagaagtcc caactgctgc cgccgggtgt cgccccgccg ctctgcgcca gccagccgag
     4861 ctcgccaccg cgcacctggc ctggcatcaa tcttgtgccg tcggacttgg tggccccggc
     4921 atagatatgc cgcgccgccg ccacctgcac cggggtcagg cattcgatct tgttgctgtc
     4981 gctgcattgg aactggacgg gatcgacggt gcagcggcgc ggatcggcga tgacgccgtc
     5041 ttccaagcca tcaagcttgt cgcaggcctt gatcatgccg cgattcagaa tcgcgacgct
     5101 ttgcgcggtg agggcgctct ggtctttcat cgccggcatg ctgttccagg tgtgaccgaa
     5161 catcagcgct gtccatttcc acggcgccgc gccgccgacc atgccgtcat agtcgggcgg
     5221 aaagcgcgtc gcttccatga tggcgtgatg gctgccggcc gagcaggaga tgaaataatt
     5281 cttgcccgcc ggcttgccgt agaaggcggc gacggttttc ttggcggcga tggtggacaa
     5341 atgcagcgcc cgacccgccc aatccaccat cttttcggga tgcttgtagg cccaactcag
     5401 cccatgctcg ccattggcgc cgtcgacatg gccgttgtcg gtggacatgg tggcgtaacc
     5461 ggacagca
//
LOCUS       DATMDK010000385         3197 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_862854,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000385 DATMDK010000000
VERSION     DATMDK010000385.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3197)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3197)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3197
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_862854"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..292
                     /locus_tag="VNN98_07385"
     CDS             <1..292
                     /locus_tag="VNN98_07385"
                     /inference="COORDINATES: protein motif:HMM:NF039797.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF6491 family protein"
                     /protein_id="HWM61957.1"
                     /translation="VDDFKGLPGGRSLIVTDSFRKKFKITLQGRCNNLQSNPTLVFKA
                     RAPGRLACLTRGDTVLSSSYGGPPDRCFIRMIEAYSPDTERSDTAVAPDRKN"
     gene            559..1077
                     /locus_tag="VNN98_07390"
     CDS             559..1077
                     /locus_tag="VNN98_07390"
                     /inference="COORDINATES: protein motif:HMM:NF012383.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009116 - nucleoside metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosyltransferase family protein"
                     /protein_id="HWM61958.1"
                     /translation="MTLPQIIYSKDEIQVRLLEVVKQLAVLENRPQVAAPVLVGAFVF
                     AADLVRAMAEEGLQLETEMIWLRSYGNARTGAAISVLAAPTDHVRGKHVLLVDGILDK
                     GHTIRRSTSLLLEAGAASVKTVVAVDKLHDDAVVKADFALFTGVKDFIVGYGMDDAGQ
                     YRALPYIGKVDS"
     gene            complement(1083..2093)
                     /locus_tag="VNN98_07395"
     CDS             complement(1083..2093)
                     /locus_tag="VNN98_07395"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61959.1"
                     /translation="MRKSIAAALLALAAFPAPALAWGGAGHRMIGELAARNFPKDIPA
                     FLKSPVAVWQIGELAQEPDISRNAGQPHDADSDPGHFLDVSDDGSILGGPKLPALPAT
                     RRDYDTALRAVKSDEYKAGFLPYAIMDGWQQLVKDFALLRRDMAALKYARKFAMTAAE
                     KKSYAESQAVRQILTLRDLGVWAHYVGDGSQPLHASVHYNGWGEGPNPQGFVVTPGLH
                     AKFESDFVNANITEKDVAAVLRPYGGCGCTIQQQTQNYLLATAAQVVPTYELEKAGAF
                     DSATPAAKEFAAQRIAEGAAMLRDMVTDAWQAAGAATLGYKSKESVADIEAGKADPRK
                     LD"
     gene            complement(2159..>3197)
                     /locus_tag="VNN98_07400"
     CDS             complement(2159..>3197)
                     /locus_tag="VNN98_07400"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HWM61960.1"
                     /translation="TRDLNNLCFEQVTGGSAGFPTCTTATPSAVGTNGTVTLPGVTST
                     PAAPVLFVPPAQKTVNYNRLLPNVGFTFTPFGPQHQFYVDYAAGIAAPRTDNLYNGGS
                     NGKCQTPTTAGCLYSAFTVVNPETSTNYDIGYRYTSDLVNLTLTAYNTQFKNRIVTTF
                     DQDQGISVDRNIGSVNVDGVDAEVEVRPDQNWDIYSSLAYNHSRVSGSAQSIVLLSAT
                     SAPLDLAGKTLVETPAWTFSQRVEYKWDDLTFGLGGKFVSSRWITDANDFKVPSYTTV
                     DADVRYDLTSLGWDGSYIKVNVWNLGNQRYLGNLTTRVCYRPGVTGCTTLPAVTPGAP
                     RTIQATLRTEF"
BASE COUNT          598 a          950 c         1016 g          633 t
ORIGIN      
        1 ggtcgatgat ttcaaagggc tgccaggcgg ccgctcgctg atcgtcaccg atagttttcg
       61 caagaagttc aagattacct tgcagggccg gtgcaacaat ttgcaatcca acccgacgct
      121 tgtcttcaag gccagggcgc cgggaaggct ggcctgtctc acccgcggcg acaccgtgct
      181 atcgagcagc tatggcggac cgccagatcg ctgcttcatc cggatgatcg aggcctacag
      241 ccccgatacg gagcgctccg atactgcggt ggcgccagat cgaaaaaatt gacgtaatga
      301 ccctgttttt cttaagcact tgagagacgt gagcggtcgg atccggccgc gcgggattga
      361 tcttttgggg agccccgatt cacatggcaa tcctatccac agccatttta cggaccaatc
      421 cgttatccaa gttcatcccc ggaccatcgc gcgtataagg cttctaaagg ccaatgaagc
      481 gcggacaatc cggctcggat caatggccgc agcaagcaca gatgttgggc aatatctgct
      541 cacaagtgag gacagagaat gactttgccc cagatcatct attcaaagga cgagatccaa
      601 gtccgcctgc tcgaagtggt caagcagctt gctgttttgg aaaacagacc ccaggttgcc
      661 gcaccggtgc tggtcggcgc cttcgttttt gcggcggacc tggtgcgggc gatggcggaa
      721 gaaggcctcc aactggagac cgagatgatc tggctgcgat cttacggaaa tgcgcgaacc
      781 ggagcggcca tttctgtcct tgccgcgcca accgatcacg tccgcggcaa acatgtgttg
      841 ctcgtcgacg gcattctgga caagggccac accattcgcc gctccaccag cctgttgctg
      901 gaggccggcg ccgcgtcggt gaagaccgtg gtcgcggtgg acaagctgca tgacgacgcg
      961 gtggtgaagg ccgattttgc gcttttcacg ggcgtgaaag actttatcgt cggctacggc
     1021 atggacgatg ccggccaata tcgggccttg ccctatatcg gaaaagtcga ctcctagagg
     1081 ccttagtcca gcttgcgggg atcggccttg cccgcttcga tatcggccac gctttccttg
     1141 ctcttgtagc cgagcgtcgc cgcgcccgcc gcctgccagg catccgtcac catgtcgcgc
     1201 aacatggcgg cgccctcggc gatacgctgg gcggcaaatt ccttcgcggc gggcgtggca
     1261 ctgtcgaagg cgccggcctt ttccagctca taggtcggca ccacctgcgc cgccgtggcc
     1321 agaaggtaat tctgcgtctg ctgctggatg gtgcagccgc agccgccata cggccgcaat
     1381 acggccgcca cgtctttttc agtaatgttg gcgttgacaa aatcgctttc gaacttggca
     1441 tgcaggccgg gcgtgacgac gaaaccttgt ggattcggcc cctcgcccca gccattgtaa
     1501 tgaacgctgg catgcagcgg ctggctgccg tcgccgacat aatgcgccca cacgcccaga
     1561 tcgcgcaggg tcagtatctg gcgcaccgcc tgcgactctg cataggattt cttctcggcc
     1621 gccgtcatgg cgaatttgcg ggcatatttc agggccgcca tgtcacggcg cagcaaggcg
     1681 aagtccttca ccagctgctg ccagccatcc atgatggcat agggcaggaa acccgccttg
     1741 tattcgtcgc tcttcaccgc gcgcagggcg gtgtcgtaat cgcggcgcgt ggcgggcagc
     1801 gccggcaatt tcggcccgcc caggatgctg ccgtcgtcgg agacatccag gaaatgtccc
     1861 ggatcgctgt cggcatcatg cggctggccg gcgttgcggg aaatgtccgg ttcctgcgcc
     1921 aattcgccaa tctgccacac cgcgacaggg cttttcagga aggcgggaat gtccttgggg
     1981 aaattcctgg ccgccaactc cccgatcatc cggtggccgg cgccgcccca ggccaaggcc
     2041 ggagcgggaa aggcggccag tgccaacaga gccgcggcga tcgattttcg catgacacct
     2101 ccacaaaaga aaaaggccgg cttttcagcc agccctcttc gaagatcata ccacggcttt
     2161 agaattccgt gcgcagcgtg gcctggatgg ttcgcggcgc gccgggggtg acggccggca
     2221 gggtggtaca gccggtgacg cccggacggt agcagactct ggtcgtcagg ttgcccagat
     2281 agcgctggtt gcccaggttc cacacgttga ccttgatgta ggaaccgtcc cagccgagcg
     2341 aggtgagatc gtagcggaca tcggcatcga cggtggtata gctcggcacc ttgaagtcgt
     2401 tggcgtcggt gatccagcga ctgctgacga acttgccgcc caggccaaag gtcaagtcgt
     2461 cccacttgta ttcaacacgc tgcgagaagg tccaggcagg ggtttccacc agtgtcttgc
     2521 ccgccaggtc gagcggcgcg ctggtcgccg acagaagaac gatggactgg gcgctgccgc
     2581 taacgcggct gtgattgtag gcgagcgagg aataaatgtc ccagttttgg tcggggcgca
     2641 cttccacctc ggcatccacg ccatcgacat ttaccgaacc gatattacgg tcgacgctga
     2701 tgccctggtc ctggtcgaag gtggtgacga tgcggttctt gaactgggtg ttgtaggcgg
     2761 tgagcgtcag gttcaccaga tcggaggtgt agcggtaacc gatgtcgtag ttggtgctgg
     2821 tttccggatt gaccactgtg aaggccgaat agaggcagcc cgccgtggtc ggggtctggc
     2881 acttgccgtt ggagccgcca ttgtacaggt tgtcggtacg cggcgccgcg atgccggcgg
     2941 catagtccac atagaactga tgctgcgggc cgaatggcgt gaaggtaaag ccgacattgg
     3001 gcagcaggcg gttgtagttc accgtcttct gggccggcgg cacgaacagg accggcgcgg
     3061 ccggtgtgct ggtgacgccc ggcaaggtca cggtgccgtt cgtgcccacc gccgacggcg
     3121 tcgccgtggt gcaggtgggg aagccggcgc tgccgccggt gacctgttca aagcatagat
     3181 tgttcaggtc gcgggtc
//
LOCUS       DATMDK010000386         3985 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1333088,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000386 DATMDK010000000
VERSION     DATMDK010000386.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3985)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3985)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3985
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1333088"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            102..1259
                     /locus_tag="VNN98_07405"
     CDS             102..1259
                     /locus_tag="VNN98_07405"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HWM61961.1"
                     /translation="MLRQIWIVSALNFKSLESRFWQSMVIVVGLAATIGVMLSMLSLS
                     AGMREAYLRAGDPGRAIVVSKGADSEPQSSITRDVAPLIADAPGIAKDKDGKPLADRG
                     LNMGVPVLRKDGSKGYTTMRGLADKGQGVRPELHIVAGRMFQPGRREMIVGVGAQTLF
                     QHMQIGDKVILPDGEWPIVGVFATGDLLEGQLLGDTETLLAAMHKSAYNTVLVRLASP
                     NSLDTFKRALTTNPALSVTVERHSDWYKRVASESTFVLALLAYIVGAVMAIGALFGCL
                     NTMYAAVSTRGREIATLRALGYGAFPVAVSVILEAVLLAVAGALIGAAIAWALYDGKQ
                     DVFGNSVFHLSVSRTQFGLGVTWAVAVALLGGILPSVRAARRPVVEALRAT"
     gene            1301..2500
                     /locus_tag="VNN98_07410"
     CDS             1301..2500
                     /locus_tag="VNN98_07410"
                     /inference="COORDINATES: protein motif:HMM:TIGR01730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HWM61962.1"
                     /translation="MNIENDKSSLLASLKIERGAPVKRRGGPSPLLIGAAAVAVVAIA
                     AAAWFFWPDGRIPVHVITASAEGSGGTAGSGLDASGYVVARRKATLSAKILGKLTEVN
                     FEEGQLVKAGDIVARLDDTNYAAALHQAEAQAIQAKAALDNAAPIYIRYQSLKTQGAI
                     STDAVANQRALYDAARTGYSVSQAQVAFAQSNLRDTLVRAPFDGVVTVKVAQVGEVVA
                     PQASGGGDTRTGIVTIVDMNSLEVQVDVSENYIERVEVGGAATIHLDAYPDWDIPGSV
                     IAIIPTADQSKGTVAVRIAIKAKDSRILPQMAARVSFLTAPPEKGAVQAVARVSVPPG
                     AVLANGKTGTVFLIGADGVIEKRDVALGLKTAQAVTILSGISAGDQLAGDNLDKLHDG
                     DKVKIQE"
     gene            complement(2522..>3985)
                     /locus_tag="VNN98_07415"
     CDS             complement(2522..>3985)
                     /locus_tag="VNN98_07415"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HWM61963.1"
                     /translation="AIATPAIGGAGWWLTHRGGIPMDAGAMAVLPFDNNSSDQTLAYM
                     SHSVPDELIRLLTNLTSFTVRPFHSVQAFLQDNPKNQDPGIGLGVGHTVNGSFSRSAA
                     GLWLGVSIVDEVRQQQVWADSFQADPDHLTGMMEMVVAKVGSVLRLQLGADNIRTAIG
                     CDSDQAYILYLRAIGLEQEITRENNASATQALQQAVALDPNFARAHAALAECYVTSLY
                     WNLSTGQALLDQAETAARRAITLRPDLAESHYALAYTLEEKGKRNDAILEYFASLRAN
                     KRYARAVENVARYLFYMAEFDRSIEMWDAVARIDPTSNKPHLRRAMCYFFKGDSGKAA
                     SENAQAEKLARGVDELTLCAFTYAWLKDFKSANRVLDRLAQSQPSASQLAEVRAWIFT
                     QQGKIPAARAQMAEVLKANSSYGLWDEIATLYAIQGDREQAITLLTRAVDAGAPLYAW
                     YASDFFKSVRGDPGYQAVLKKLSDEYAPLKKQIPKVN"
BASE COUNT          719 a         1253 c         1266 g          747 t
ORIGIN      
        1 tggtggcatt cgccagttcc gctttgcctg cgcttcggct gaaacagatg gacattgcaa
       61 ccgccctttc tgggcgaaca taagatcgga gacattaggc catgctgcgc cagatatgga
      121 ttgtttccgc cctgaacttc aaaagcctcg agagccggtt ctggcagtct atggtgattg
      181 tggtggggct ggccgccacc attggcgtga tgctgtccat gctgtcgctg agcgcgggca
      241 tgcgcgaggc ctatctcagg gccggcgatc caggccgcgc catcgtggtt tccaagggag
      301 cggacagcga gccccaaagc agcatcacgc gcgacgtggc gcccttgatc gccgatgcac
      361 ccggcatcgc caaggacaag gatggcaagc cgttggcaga caggggcttg aacatgggcg
      421 tgcccgtcct gcgcaaggac ggcagcaagg gctacaccac catgcgcggc ctggccgaca
      481 agggacaggg cgtaagaccg gagctccaca ttgtggcagg ccgcatgttc cagcccggca
      541 gacgcgagat gatcgtgggc gtgggcgctc agaccttgtt ccagcacatg cagatcggcg
      601 acaaagtaat cctgcctgat ggcgagtggc ccatcgtggg tgtgttcgcc actggcgacc
      661 tgctggaagg ccagttactc ggcgataccg aaactctact cgccgccatg cacaagtctg
      721 cctataatac cgttctggtg cggctggcgt cgccgaattc actagatacg ttcaagcggg
      781 cgctgaccac caacccagct ttgtcggtga cggtggaacg ccattccgac tggtacaagc
      841 gcgtcgccag cgagtcgacc ttcgttctcg cacttctggc ctatattgta ggcgcggtga
      901 tggcgatcgg cgccctgttc ggttgtctca acaccatgta tgcggcggtc tcgacgcgag
      961 gccgcgagat cgcaaccttg cgcgccttgg gttatggcgc ttttccggtc gctgtgtcgg
     1021 tgatcctgga ggcggtctta ctggctgtgg cgggcgccct gatcggcgcc gccatcgcct
     1081 gggcgctgta tgacggaaag caggatgttt tcggcaacag cgtctttcat ctttccgtct
     1141 cgcgcaccca attcggactg ggcgttacct gggcggtggc agtggcgctc ctggggggaa
     1201 tcctgccctc cgtccgtgcc gcgcgccggc cggtggtgga agccttgcgg gcaacgtagt
     1261 attgttccgc aggtgatcgg tgtgacatga gctgggcgac atgaatatcg agaacgacaa
     1321 atcctcattg ctggcttcgc tcaagatcga gcgcggcgcg cccgtgaaaa ggcgcggcgg
     1381 cccctcgccg cttctcattg gcgcggcggc tgtggccgtg gtagcaatcg cggcggcggc
     1441 ctggttcttc tggcccgacg gacgcattcc cgtccatgtc atcaccgcca gcgcggaagg
     1501 cagtggcggc acggccggtt cggggctgga tgcgtcgggc tatgtggtgg cacggcgcaa
     1561 ggccaccctg tcagcaaaga ttctcggcaa gctgactgaa gtgaatttcg aggaaggcca
     1621 gttggtcaag gccggcgaca tcgtggcgcg gctggacgat accaactatg cggcggcgct
     1681 gcatcaggcc gaggcccagg ctatccaggc caaggcggcg ctggacaatg ccgcgccgat
     1741 ctatatccgc taccagagcc tgaagacaca gggcgccatc tccaccgacg ctgtggccaa
     1801 ccagcgcgcc ctctacgatg ccgcgcgtac cggctatagc gtgtcgcagg cacaggtggc
     1861 gtttgcccaa agcaatttgc gcgatacgct ggtgcgcgcg cccttcgacg gcgtggtcac
     1921 ggtcaaggtg gcgcaggttg gcgaagtcgt cgccccgcag gcgtctggcg gcggtgacac
     1981 ccgcaccggc atcgtcacca tcgtggacat gaattcgctg gaggttcagg tggacgtcag
     2041 cgaaaactac attgagcgcg tggaggtcgg cggcgcggcc accatccatc tcgacgccta
     2101 tcccgactgg gacattcccg gttcggtgat cgccatcatc cccaccgccg accagagcaa
     2161 gggcaccgtg gcggtgcgca tcgccatcaa ggccaaggac tcccgcatcc tgccgcagat
     2221 ggcggcgcgg gtctcgttcc tcaccgcgcc ccccgaaaaa ggtgcggtcc aggcggtggc
     2281 gcgggtcagc gtgccgcccg gcgcggttct ggccaacggc aaaaccggca ccgtcttcct
     2341 gatcggtgcc gacggcgtga tcgaaaagcg cgacgtggcg ctggggctga aaacggccca
     2401 ggccgtcacc atcctgtccg gcatctccgc cggcgaccaa ctggccggcg acaatttgga
     2461 caagctgcat gacggcgaca aggtcaagat tcaggaatag tccgcgccgt ctcttcgatg
     2521 ctcagttcac tttcggaatc tgctttttca gcggcgcata ttcgtctgag agcttcttga
     2581 gcacggcctg gtagcccgga tcgccgcgca ccgatttgaa gaaatccgag gcgtaccagg
     2641 catagagcgg cgcgcccgca tcgacggcgc gggtcagcag cgtgatagcc tgctcccggt
     2701 cgccctgaat ggcgtatagc gtggcgattt cgtcccaaag gccgtagctg ctgttcgcct
     2761 tcagaacctc cgccatctgc gcccgcgccg cgggaatctt gccctgctgg gtgaaaatcc
     2821 aggcgcgcac ttccgccaac tgtgatgcgg agggttgcga ctgcgccagc cggtccaaca
     2881 cacggttggc ggacttgaag tccttcagcc aggcataggt gaaagcgcac aaggtcagct
     2941 catccacacc acgggccagc ttctccgctt gggcattctc ggatgccgcc ttgccggaat
     3001 cgcccttgaa gaaatagcac atcgcccggc gcaaatgcgg cttgttgctg gtgggatcta
     3061 tcctggccac cgcgtcccac atctcaatcg agcggtcgaa ctccgccata tagaacaaat
     3121 agcgcgccac attctccacc gcgcgggcgt agcgcttgtt ggcgcgcagg ctggcaaaat
     3181 attccaggat ggcgtcgttg cgcttgccct tttcttccaa ggtataggcc aacgcgtaat
     3241 gggattctgc cagatcgggc cgcagtgtga tcgccctgcg cgccgcggtt tccgcctggt
     3301 ccagcagcgc ctgtcccgtc gacaggttcc agtacagact ggtgacatag cattcggcca
     3361 acgcggcatg ggcgcgggcg aaattgggat ccagcgcgac ggcttgctgc agggcctggg
     3421 tggcgctggc attgttctcc cgcgtgatct cctgctccag gccaatggcg cgcagataga
     3481 gaatataggc ctggtcgcta tcacagccga tcgcggtgcg gatattgtcc gcgccgagtt
     3541 gaagccgcag caccgagccg accttggcca ccaccatctc catcatcccg gtcagatgat
     3601 ccggatcggc ctgaaaggaa tcggcccaga cctgctgctg gcgcacctcg tccacgatcg
     3661 acacgcccag ccacaacccc gccgcgctgc gcgaaaagct gccattcacg gtatggccca
     3721 cccccaggcc gataccgggg tcctggtttt tgggattgtc ctgcaaaaac gcctgaacgc
     3781 tgtggaacgg ccgcaccgtg aaagaagtga gattcgtcag caaccgtatg agttcgtcgg
     3841 gcaccgaatg gctcatatag gccaaggtct gatcgctgga attgttgtcg aagggcagca
     3901 ccgccatggc cccggcatcc atcggtatcc cgccgcggtg ggtcaaccac cagcctgcgc
     3961 cgccaatcgc cggtgtggcg atagc
//
LOCUS       DATMDK010000387         2093 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_659198,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000387 DATMDK010000000
VERSION     DATMDK010000387.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2093)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2093)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2093
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_659198"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..923)
                     /locus_tag="VNN98_07420"
     CDS             complement(<1..923)
                     /locus_tag="VNN98_07420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004350825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HWM61964.1"
                     /translation="MNLSKFFIDRPIFAGVISIAVFLAGLLSMFLLPISEYPEVVPPS
                     VVVTAQFPGANPKVIAETVATPLEEQINGTENMLYMFSQAASDGTLTLTVTFALGTDP
                     NLAQQLVQNRVNQALPRLPEVTRNLGVTTIKSSPDLTMVVHLLSPNNRYDMLYLRNYA
                     VLNVKDRLAKIQGVGQVQMFGSGDYAMRLWLNPQKIAERKMTADEVINAVRRQNVQVA
                     AGVINGPPYGSKGELQLPINAQGRLSDPDQFANIVIKRDNGVVTRLADVARVEVQASQ
                     YGLRSLLDNKQAVAIPIFQAPGSNAIQISDNV"
     gene            complement(967..>2093)
                     /locus_tag="VNN98_07425"
     CDS             complement(967..>2093)
                     /locus_tag="VNN98_07425"
                     /inference="COORDINATES: protein motif:HMM:TIGR01730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HWM61965.1"
                     /translation="LVVLGGGWFAFHHMASADATQVAAISPAVPVSVMTIKPQKVRIW
                     SEFSGKLDAVDYAEIRPEVSGRITEIRFKDGQNVKAGDVLFVIDPRPYQAAVAKAAAD
                     LQSARTNAALAKTNLIRADNLRKANAIALQSYDQSANAADVTNAAIQGTEATLAQARL
                     DVDHAYVKAPISGKVSRAEITLGNLVQVTTGAPLLTSIVSEDGIYADFDVDEQTYVQS
                     IHAHAGTQAEQQKIPVELTLAGDNGHVYKGFIQSFDNRISTGSGTIRARARFENTDGA
                     LVPGMFVSVRLANADDSTVLLVPERAIGTDQSKKFVFVAGKEGKADFREVTLGQTVDG
                     QRVVLSGLAKGERVIVDGTQHVMPGALIQAQEVSGKVAAK"
BASE COUNT          376 a          623 c          681 g          413 t
ORIGIN      
        1 acattgtcgg agatctggat ggcgttggag ccgggggcct ggaaaatcgg aatcgccacc
       61 gcctgcttgt tatccagcag cgagcgcagg ccgtattggg aggcctgcac ttccacccgc
      121 gccacgtcag ccaggcgcgt caccacacca ttgtcgcgct tgatgacgat gtttgcgaac
      181 tggtcgggat cggacagccg gccctgagcg ttgatcggca gttgcaactc gcccttgctg
      241 ccatagggcg ggccgttgat cacaccggcc gcgacctgca cattctggcg gcgcacggca
      301 ttgatcacct cgtcggcggt cattttgcgc tcggcgatct tttgcgggtt cagccacagc
      361 cgcatggcgt aatcgcccga accgaacatc tgcacctggc ccacaccttg gatcttggcc
      421 agccggtcct tgacgttcag caccgcgtaa ttgcgcagat acagcatgtc atagcggttg
      481 ttgggcgaca gaagatgcac gaccatggtg aggtcgggcg aactcttgat ggtggtgacg
      541 cccagattgc gggtcacttc cggcaggcgc ggcagcgcct gattgacccg gttctgcacc
      601 agctgctggg ccaggttggg atcggtgccc agggcgaagg tcacagtcag ggtcagggtg
      661 ccgtccgagg cggcctggga gaacatgtaa agcatgttct cggtgccgtt gatctgctct
      721 tccagcggcg tcgccacggt ttcggcgatt actttgggat tggcgccggg aaactgcgcc
      781 gtcaccacca cagacggcgg cacgacttcg ggatattccg aaatcggcag caggaacatc
      841 gacagcaatc ccgccaggaa aacggcgatg gagatcaccc cggcgaagat cggccggtcg
      901 atgaagaatt tggagaggtt cacgaaacgt ccttatagat tatttttatt gcggaccggt
      961 gacggcttat ttcgccgcca cctttccgga tacttcctgg gcctggatca gcgcgccggg
     1021 catgacatgc tgggtaccgt ccacgatcac gcgctcacct ttggcaaggc ctgacagaac
     1081 cacgcgctgg ccgtcaacgg tttggcccag agtgacttcg cggaagtcag ccttgccttc
     1141 cttaccggcg acgaagacga acttcttgct ctggtcggtg ccgatggcgc gttcgggcac
     1201 cagcagcacg gtggaatcgt cggcattggc cagccgcacc gagacgaaca tgcccggcac
     1261 cagcgcgccg tcggtatttt caaagcgggc gcgggcgcga atggtgcccg aaccggtgct
     1321 gatgcggttg tcgaagctct ggatgaagcc cttatagaca tggccattgt cgccggccag
     1381 cgtcagctcc accggaatct tttgctgctc ggcctgggtg ccggcatggg cgtggatgct
     1441 ctgaacataa gtctgctcat cgacatcgaa gtcggcatag atgccgtcct ccgacacgat
     1501 ggaagtgagc agcggcgcgc cagtcgtcac ctgcaccaga ttgcccagcg taatctcggc
     1561 gcggctgacc ttgccggaga tcggcgcctt tacataagca tgatccacat ccagccgggc
     1621 ctgggccagg gtggcttcgg tgccctggat ggcggcgttg gtgacatcgg cggcattggc
     1681 cgactggtca taggactgca gcgcgatggc attggctttg cgcagattgt cggcgcggat
     1741 cagattggtc ttggccaggg ccgcattggt gcgggccgat tgcaggtcgg cggcggcctt
     1801 ggccaccgcc gcctgatagg ggcgcggatc gatcacgaac agcacgtcgc cggccttgac
     1861 gttctggccg tccttgaagc ggatttcggt gatgcggccg gaaacctcgg ggcggatttc
     1921 ggcataatcc accgcatcca gcttgccgga gaattccgac cagatccgca ctttttgcgg
     1981 ctttatggtc atgacgctga cgggcacggc cgggctgatg gcggcgacct gggtggcgtc
     2041 agcgctggcc atgtggtgga aggcgaacca gccgccaccc agcacaacca ggg
//
LOCUS       DATMDK010000388         3716 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1093165,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000388 DATMDK010000000
VERSION     DATMDK010000388.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3716)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3716)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3716
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1093165"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..699
                     /locus_tag="VNN98_07430"
     CDS             <1..699
                     /locus_tag="VNN98_07430"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61966.1"
                     /translation="GLGAAQVTPSVEIFADILGRSIASDELVEEFLETDWNGLAVHLT
                     LNRVAPQAAPIGTVDLDGLFPDSAYFRDWLHSGNADYLVLMTGDGAYRFADVKAIIRL
                     LEQQQSLGGVFGSRTQSRRQFITSIQAAYGENRLLYGLGKAAAFFLSMLFYFRTGVIF
                     SDPLTGLRVFRRRSLAGLPAIKGDAPLALVRQLIRQGVEVAELPVLYRTFSGFTDPNW
                     RVRRGLRNLASLLS"
     gene            696..1424
                     /locus_tag="VNN98_07435"
     CDS             696..1424
                     /locus_tag="VNN98_07435"
                     /inference="COORDINATES: protein motif:HMM:NF024214.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NTP transferase domain-containing protein"
                     /protein_id="HWM61967.1"
                     /translation="MKICALIPAAGRGMRLGSDTPKILTPLTAQETVWSILYAKLAPL
                     VDHIHLVLSPDGAAAFPPLPANVSTSVQSTPTGMGDAIFCGYGAWSRYDAVLIVWGDQ
                     VFVSSDTISRALVAMGKMERHAVLPITRMATPYVEYVFDGPRLTRVLQSREGDATTPN
                     GFSDVGTFLLGTPGLQPAWEDYLASAPRGSGTGEINFLPFLPFLSARGWSVTPLTVAD
                     ATEARGINTQDDLAFFQSLYKNAP"
     gene            1421..2308
                     /locus_tag="VNN98_07440"
     CDS             1421..2308
                     /locus_tag="VNN98_07440"
                     /inference="COORDINATES: protein motif:HMM:NF027681.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent epimerase/dehydratase family
                     protein"
                     /protein_id="HWM61968.1"
                     /translation="MKNVLVTGGAGFIGSHLCEGLLARGLGVRVLDSLIYGRREWVPA
                     GCEFLEGDIRDIAACQRAAAGMDGVFHCAAMSRSGPSQEQIEVCTASNITGTQNMLLA
                     ARDAGVKRFIYSGSSTYYGNRATPHRESDPPNLLNIYDLTKRVGEQYCLLFDPDLPCV
                     VLRYFNVYGPRQPETGAYALVLGIFLRRHAEGKALEIHGDGAQRRDFVHVRDVVAANI
                     AAYESGTRGEVFNVGSGTSISVKELASMISPDQVHTPARKGDSLATLADISKIQAALG
                     WTPKVGFEDGLNELKALAK"
     gene            complement(2301..3203)
                     /locus_tag="VNN98_07445"
     CDS             complement(2301..3203)
                     /locus_tag="VNN98_07445"
                     /inference="COORDINATES: protein motif:HMM:NF013088.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter"
                     /protein_id="HWM61969.1"
                     /translation="MNRIGFVSAVAASTLFGVGGTLAQFLFQQRGVNIDWLVTMRLLS
                     SGAVLLLISAMRQGRGILAVWRTDAVALILFGLLGMLAVQYTYMAAIRDSNNATATVL
                     QFTAPAMIAVWLALAGRRLPSAPEAAAIGLAMLGTFFLVAHGKIGALSISPPALFWGV
                     ASAVAAAFNSLQPVRMLRKYGATAVGGWGMLVGGVALSFVQAPWKVEGAWDMWTYGFT
                     GFILLFGTLVAFYLYITALRLIGAQKSSLLTCAEPLSAAALAVWWLGVPWGGMDWLGT
                     ACILITIVLLAKEQSEESQSEKVT"
     gene            complement(3216..>3716)
                     /locus_tag="VNN98_07450"
     CDS             complement(3216..>3716)
                     /locus_tag="VNN98_07450"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61970.1"
                     /translation="PAKFADAAVYGAIAYTVFNKASGPLEPANSADLVLTARNIHDWM
                     WTPGYAEKGMADFYAVLKPGGILAVEDHRADPRPQIGDARDGYVATANIVAMAKKAGF
                     VLEASSEINANPKDTKDHPFGVWTLPPTRQSAPDGKPDNPAFGHAKYDAIGESDRMTL
                     RFRKPT"
BASE COUNT          660 a         1214 c         1152 g          690 t
ORIGIN      
        1 gggctgggcg ccgcgcaggt cacgccgagc gtcgagatct tcgccgacat attgggccgc
       61 tccatcgcca gcgacgaact ggtggaagag tttctggaga ccgactggaa cgggttggcg
      121 gtgcatctca ccctcaatcg cgtcgcgccg caagccgcgc ccatcggcac cgttgatctg
      181 gacggattgt tcccggacag cgcctatttc cgcgactggc tgcacagcgg caacgccgat
      241 tacctggtgc tgatgaccgg cgacggcgcc taccgtttcg ccgacgtcaa ggccatcatc
      301 cgcctgctgg aacagcagca atcgctgggc ggcgtgttcg gctcgcgcac ccagagccgg
      361 cggcagttca tcacctccat ccaggccgcc tatggcgaga accgcctgct ttatgggctg
      421 ggaaaggcgg ccgccttctt tctcagcatg ctgttctatt tccgtaccgg ggtgatcttc
      481 tccgatccgc ttaccggctt gcgcgtcttt aggcggcgga gtctggcggg cctgcccgcg
      541 atcaagggcg atgcgccgct ggcgctggtg cgccagctga tccgccaggg tgtcgaagtg
      601 gcggaactgc cggtgctgta ccgcactttt tccggcttca ccgatcccaa ctggcgggtg
      661 cggcggggtt tgcgcaacct cgccagcctg ctgtcatgaa aatctgcgcc ctcattcccg
      721 ccgccggccg cggcatgcga ttgggcagcg acacgcccaa gattctcacg ccgttaacgg
      781 cacaggaaac cgtctggtcg atcctgtatg ccaagcttgc gccgctggtg gatcacatcc
      841 atctggtgtt gtcgcccgat ggcgcggcgg cgtttccgcc tttacccgcc aatgtctcca
      901 cctccgttca gtccacaccc accggcatgg gtgacgccat tttttgcggt tacggtgcct
      961 ggtcgcgcta tgatgcggta ttgatcgtct ggggcgatca agtcttcgtg tccagcgaca
     1021 ctatcagccg agccctcgtc gccatgggca aaatggaaag gcacgccgtg ctgccgataa
     1081 cacggatggc caccccttat gtcgaatatg tcttcgacgg cccccggctg acccgggtgt
     1141 tgcagagccg cgaaggcgat gccaccacgc cgaacggttt ttccgatgtc ggcacctttc
     1201 tgctgggaac gccggggctc cagcccgcct gggaggacta tctggcaagc gcgccgcgtg
     1261 gcagcggaac cggcgagatc aatttcctgc ccttcttgcc gttcttgtcc gcgcgcggct
     1321 ggtccgtcac gcccctgacc gtggctgatg ccaccgaagc gcggggcatc aacactcaag
     1381 acgatctcgc ctttttccaa agcctgtata agaacgcccc atgaaaaatg ttttggtcac
     1441 cggcggggct ggattcatcg gcagccatct ttgcgaaggc ctgctggcgc gcgggcttgg
     1501 cgtgcgggtg ctggacagtt tgatctatgg ccggcgcgaa tgggtacccg ctggttgcga
     1561 attcctcgaa ggtgatatcc gcgacatcgc cgcctgccag cgcgccgccg ccgggatgga
     1621 cggggtgttt cattgcgccg ccatgtcccg ttccggtccg tcgcaggagc agatcgaggt
     1681 ctgcacggcg tccaacatta ccggcaccca gaacatgctg ctggcggcgc gggacgccgg
     1741 cgtaaagcgc ttcatctata gcggctcctc cacttattac ggcaaccgcg ccacgcccca
     1801 tcgggaaagc gacccaccca atctgctcaa tatctacgac ctgaccaaac gggtgggcga
     1861 gcaatattgc ctgctgttcg atcccgatct gccctgtgtg gtgctgcgct atttcaacgt
     1921 ctatggcccg cgccagccgg agaccggcgc ctacgctctg gtgctgggca tattcctgcg
     1981 ccgccatgcc gaaggaaagg cgctggagat tcatggcgac ggggcgcagc gccgcgactt
     2041 cgtgcatgtg cgcgatgtgg tggccgccaa tatcgcggct tatgaaagcg gcacgcgcgg
     2101 cgaagtgttc aatgtcggca gcggcaccag catctccgta aaagaactgg cgagcatgat
     2161 atcgcccgac caggttcaca ccccggcgcg caaaggcgat tccctggcca ccctggccga
     2221 tatttccaag atacaggccg cgctgggctg gaccccgaag gtcgggttcg aggatgggct
     2281 gaatgaactc aaggctttgg ctaagtaact ttttctgact ggctttcttc cgactgttct
     2341 ttcgccagca gcacgatggt gatcaggatg caggcggtgc ccagccagtc cattccgccc
     2401 cacggcacgc ccagccacca caccgccagc gccgccgccg acagtggttc ggcacaggtg
     2461 agcaggctgg acttctgcgc cccgatcagg cgcaacgctg tgatgtaaag ataaaaggcc
     2521 accagggtac caaacagcag gatgaagccg gtgaagccat aggtccacat gtcccacgcg
     2581 ccttcgacct tccacggcgc ttggacgaat gacagcgcca ccccacccac cagcatgccc
     2641 cagccgccca ccgccgtggc gccatacttt cgcagcatcc gcaccggctg gagagagttg
     2701 aaggccgccg cgaccgcaga cgccacgccc cagaacaacg ccggcggtga aatagacagc
     2761 gcgcctatct tgccatgcgc caccaggaag aaggtgccca gcatcgccaa cccgattgcc
     2821 gccgcttccg gggcactggg caggcggcgg ccggccaatg ccagccacac agcgatcatc
     2881 gccggggcgg tgaattgcag caccgtagca gtggcgttgt tggaatcccg gatcgccgcc
     2941 atataagtgt attgcacggc cagcatgccc agcaggccga acaggatcag cgccaccgca
     3001 tcggtgcgcc ataccgccag gatgccgcgc ccttgtcgca tggccgagat cagcagcaac
     3061 accgcgcccg acgacagcag ccgcatggtc accagccagt cgatattgac gccgcgctgc
     3121 tggaacagga attgcgctaa ggtgccgccc accccgaaca gggtggaggc cgccacggct
     3181 gagacaaatc cgattcggtt cacgcctcag tcttactagg tgggcttccg gaagcgcagg
     3241 gtcatgcggt cgctttcgcc gatggcgtca tacttggcat ggccgaaagc gggattgtcc
     3301 ggcttgccgt cgggcgcgct ttggcgggtg ggcggcaggg tccagacgcc gaaagggtga
     3361 tccttggtgt ccttgggatt ggcgttgatc tccgaactgg cctccagcac gaagcccgct
     3421 ttcttggcca tggccacgat attggcggtc gcgacatagc cgtcgcgggc atcgccgatc
     3481 tgcggcctgg gatcggcgcg gtggtcctcc accgccagaa tcccgcccgg cttcagcacc
     3541 gcatagaaat cggccatgcc tttttcggca tagcccgggg tccacatcca gtcatggatg
     3601 ttgcgcgccg tcagcaccag gtcggcggag ttggcgggct ccagcgggcc ggatgccttg
     3661 ttgaacacgg tataggcaat ggcgccatag acggcggcat cggcgaattt ggcagg
//
LOCUS       DATMDK010000389         2189 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_3400466,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000389 DATMDK010000000
VERSION     DATMDK010000389.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2189)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2189)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2189
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3400466"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            87..1211
                     /locus_tag="VNN98_07455"
     CDS             87..1211
                     /locus_tag="VNN98_07455"
                     /inference="COORDINATES: protein motif:HMM:NF014684.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HWM61971.1"
                     /translation="MTRKLPLWVDIGLVPLANILLAFAVAALVVLAIGASPAQALSAM
                     LSGALGSSEGIGYTLYYATNYIFTGLAVAIAFHAGLFNIGGEGQATLGGLGAGLAALA
                     LDHGVSPLLAVPLSIAAAAGFGALWAAIPAWLQAWRGSHIVITTIMFNFLAASLMVYL
                     MVNVLIAPGSMSPESVEFTAAQLPVISDLLNAHGIAVEASPLNLSFLLALLACVLVWL
                     LIWHTPFGYEVRTLGFNPHAALYAGINPKRLTLMVMCLSGALAGCVGVNEILGVHHRL
                     LLDFAAGYGFGGIAVSLMGRNHPLGIVLAALLFGILQQGGTELSFDIPTITRDMVVAI
                     QGLVILFSGALANLPRPWLEAPFLWLAQKRARVVDAAVEA"
     gene            1208..2182
                     /locus_tag="VNN98_07460"
     CDS             1208..2182
                     /locus_tag="VNN98_07460"
                     /inference="COORDINATES: protein motif:HMM:NF014684.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HWM61972.1"
                     /translation="MNDFLDALLPTLAGTLRTATPLMLCAMGGLFSERSGIIDVGLEG
                     KMLAGAFAACTIAALTGSAWLALLGAVGVAVALAALHGYAAITHRGNQVVSGVAINIL
                     ASGLTMVFGNAWFGQGGQTPALAPSARFMPIIFPGTDSIAKIPLIGPVYALLFSGNSL
                     LVYVALLSVAATWWVVSKTRFGLRLRAVGEAPAAIDAAGISVAWLRYRALLLCGVLTG
                     IAGSYIGIAQNANFSKDMSAGQGYIALAALIFGKWRPLPAFGACLIFGLLDAVAIRLQ
                     GVSVPLIGAVPVQLIQALPYLLTVVLLAGLIGRAVAPKAIGVPYEKEH"
BASE COUNT          284 a          701 c          750 g          454 t
ORIGIN      
        1 gtcggcgagg tcgagggcgc ccgcgccgac gaacgcaccc tgggcttgat gatggccaat
       61 gtgtggccca ctgccggaac agccgcatga cccgcaagct gccgctttgg gtggatatcg
      121 gcctcgtccc gctcgccaat atactgctgg ccttcgcggt ggcggcgctg gtggtgctgg
      181 cgatcggcgc cagccccgcc caagccctga gcgccatgtt gtcgggcgcg ctgggcagct
      241 ccgaaggcat cggctacacg ctctattacg ccaccaatta catcttcact ggccttgcgg
      301 tggccatcgc ctttcatgcc ggccttttca atataggcgg cgaggggcag gcgacgctgg
      361 gcggtctggg cgccggcctg gcggcgctgg cgctggatca tggtgtctct ccgttgctgg
      421 cggttccctt gtccatcgcg gcggcggccg gctttggcgc gctgtgggcc gcgatcccgg
      481 cttggctgca ggcctggcgc ggcagtcaca tcgtcatcac caccatcatg ttcaacttcc
      541 tggccgcctc gttgatggtc tatctgatgg tcaatgtgct gatcgcgccc ggctccatgt
      601 cgccggaaag cgtcgagttt accgccgcgc agctgccggt gatcagcgac ctgctcaatg
      661 cgcatggcat cgcggtggag gcttcgccgc tcaacctgtc cttcctgctg gcgctgctgg
      721 cctgtgtgct ggtctggctg ctgatctggc atacgccctt cggctatgag gtccgcaccc
      781 tgggcttcaa cccccatgcg gcgctctatg ccggcatcaa tcccaagcgc ctgaccttga
      841 tggtgatgtg cctgtcgggg gcgctggcgg gctgtgtcgg ggtcaacgag atattgggcg
      901 tgcatcaccg gctgctgctc gacttcgcgg ccggttatgg ctttggcggc atcgccgtgt
      961 cgttgatggg ccgcaaccat ccgctcggca tcgtgctggc ggctttgctg ttcggcatcc
     1021 tgcagcaggg cggcaccgaa ttgtccttcg acattcccac catcacccgc gacatggtgg
     1081 tggcgatcca gggcctggtg atcctgttct ccggcgcgct ggccaacctg ccgcgtccct
     1141 ggctggaagc gcccttcctc tggctggcgc aaaagcgcgc cagagtggtg gatgcagcgg
     1201 tggaggcatg aacgattttc tggacgcgct gctcccaacg ctggccggca ccttgcgcac
     1261 cgccacgccg ctgatgctgt gcgccatggg cgggctgttt tcggaacgca gcggcatcat
     1321 cgatgtgggg ttggaaggca agatgctggc cggcgctttc gccgcctgca ccatcgcggc
     1381 gctgaccggc tccgcctggc tggcgctgct gggcgcggtc ggcgtcgcgg tggcgctggc
     1441 ggcgctgcac ggttatgccg ccatcaccca tcgcggcaat caggtggtgt ctggcgtggc
     1501 gatcaacatt ctggccagcg ggctgaccat ggtgttcggt aatgcctggt tcggccaggg
     1561 cggacagacc ccggcgttgg cgccctcggc ccgcttcatg ccgattattt tccccggcac
     1621 ggacagcatc gccaaaattc ccctgatcgg gccggtctat gccttgctgt tcagcggcaa
     1681 ttccttgctg gtctatgtcg cgctgctcag cgtggcggcg acctggtggg tggtgagcaa
     1741 gacccgcttc ggcctacgcc tgcgggcggt gggcgaggcc ccggccgcca tcgatgcggc
     1801 gggcatttcc gtcgcctggc tgcgctatcg cgccttgctg ctctgcggcg tgttgaccgg
     1861 catcgccggg agctatatcg gcatcgccca gaacgccaat ttcagcaagg acatgagcgc
     1921 cggccagggc tatatcgcgc tggcggcgct gatcttcggc aagtggcggc cgctgccggc
     1981 ctttggcgcc tgcctgatat tcggtctgct tgacgcggtg gcgatccggc tgcaaggcgt
     2041 aagcgtgccg ctgattggag cggtgccggt gcagctgatc caggcgctgc cctatctgct
     2101 gacggtggtg ctgctggcgg ggttgatcgg gcgggcggtg gcgcccaagg caattggcgt
     2161 gccgtatgaa aaagaacatt gaagaggcc
//
LOCUS       DATMDK010000390         3827 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2467669,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000390 DATMDK010000000
VERSION     DATMDK010000390.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3827)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3827)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3827
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2467669"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..557)
                     /locus_tag="VNN98_07465"
     CDS             complement(<1..557)
                     /locus_tag="VNN98_07465"
                     /inference="COORDINATES: protein motif:HMM:NF012593.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015293 - symporter activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation:dicarboxylase symporter family
                     transporter"
                     /protein_id="HWM61973.1"
                     /translation="MLRGMTLWVLVAMLLGTGVGLFCHAAIADKETLAAVTGGLGLIA
                     TIFLRAIRMIIAPLVFSTLLTGVGRIRDTATVGRIALQAMTWFVIASVAAILVALAAA
                     EILAPGAGMHMTAAAALPGAPAAAPLTLATFVTHLVPVSIIDAMANNEILQIVVFALV
                     AGVAVSRMGAKGETLLALAEGVSQL"
     gene            complement(609..2108)
                     /locus_tag="VNN98_07470"
     CDS             complement(609..2108)
                     /locus_tag="VNN98_07470"
                     /inference="COORDINATES: protein motif:HMM:NF014877.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphomannomutase/phosphoglucomutase"
                     /protein_id="HWM61974.1"
                     /translation="MIKPRSDLVPNTADYENLPLVTANGFREYDARWLFGKEINLLGI
                     QALGLGLGTYLHDIGVQPKVVTGHDYRSYSLSIKQALTIGLLRAGCEVHDIGLALSPV
                     AYFAQFALDCPAVAMVTASHNENGWTGVKMGAQRPLTFGPDEINVIKDIVLNGKGKER
                     SGGAYVAVPDMRETYLAAVTKGHKLSRPIKVIAACGNGTAGAFAPEALRRIGAEVVGM
                     DDVLDFTFPKYNPNPEDMEMLHAMGVGVKEQGADLCLGFDGDGDRCGVVDDTGREIFA
                     DKIGVMLARGLSATHKNAQFVVDVKSTGLYLTDPVLKANGVKTDYWKTGHSYIKRRTA
                     ELGALAGFEKSGHFFFNPPIGHGYDDGIVAGIQVLKMLDAAGPGAKLSALFDGLPQSW
                     GSPTMAPFCPDEKKYTVVEAMVKEYTALKDKGETLLGQKIASVVTVNGVRVTLEDGSW
                     GLVRASSNKPSLVVVVESPASEANMRAMFADIDARLSQHPEVGEYDQKI"
     gene            complement(2189..2380)
                     /locus_tag="VNN98_07475"
     CDS             complement(2189..2380)
                     /locus_tag="VNN98_07475"
                     /inference="COORDINATES: protein motif:HMM:NF018946.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61975.1"
                     /translation="MSEKTGEIARESSNYRCERCHQLVRFSQGDLIPACPQCGCESFD
                     ISNPRFERQDGSLEPHEPG"
     gene            2478..3260
                     /gene="cobA"
                     /locus_tag="VNN98_07480"
     CDS             2478..3260
                     /gene="cobA"
                     /locus_tag="VNN98_07480"
                     /EC_number="2.1.1.107"
                     /inference="COORDINATES: protein motif:HMM:TIGR01469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004851 - uroporphyrin-III
                     C-methyltransferase activity [Evidence IEA];
                     GO_process: GO:0019354 - siroheme biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III C-methyltransferase"
                     /protein_id="HWM61976.1"
                     /translation="MDNNIAAKLGLAELQPGWVWLVGAGPGDPGLITALGLQALSQAD
                     VILYDALVDETLLTLATAEKIYAGKRAGVKSCKQDEISDLLVTLAKEGKRVLRLKGGD
                     PFVFGRGGEEAQALARAGVPFRIVPGITAGIGGLAYAGIPVTHRDTNHAVTFITGHGT
                     DGKLTKLDWASVSRGAPTLVFYMARKFAGEIAQALLAAGRGADEPAAIVANAARPNQQ
                     VIFTNLAGLEAAAQTAPALCIMVVGENVALAKELSWLAKTSA"
     gene            complement(3232..3408)
                     /locus_tag="VNN98_07485"
     CDS             complement(3232..3408)
                     /locus_tag="VNN98_07485"
                     /inference="COORDINATES: protein motif:HMM:NF018630.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1289 domain-containing protein"
                     /protein_id="HWM61977.1"
                     /translation="MKICTYDPGTGDPGTGLCLGCGRTLEEIAAWSALGDAERRAVME
                     QLPERLRQMSSPAN"
     gene            3527..>3827
                     /locus_tag="VNN98_07490"
     CDS             3527..>3827
                     /locus_tag="VNN98_07490"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61978.1"
                     /translation="MAKAQFHKNQRVYVKPVGTWALIEHVVPHWAKGLDEPIRIHYDV
                     GLGREFAAEELLSEEPLGDKTPSDTQAWRVVRARNKWQPAEDCARHPVPGTYPVVI"
BASE COUNT          730 a         1234 c         1190 g          673 t
ORIGIN      
        1 atcagttgcg acacgccttc ggccagcgcc agcaaggtct cgcccttggc gcccatgcgg
       61 ctgaccgcga cacccgccac cagggcgaaa accacgatct gcaaaatctc gttgttagcc
      121 atggcgtcga tgatcgagac cggcaccaga tgggtgacaa aggttgccag ggtcagcggc
      181 gcggcggcgg gcgcgccggg cagcgccgcg gcggcggtca tatgcatgcc ggcgccgggg
      241 gcgagaattt cagccgccgc caacgccacc aggatcgcgg ccaccgaggc gatgacgaac
      301 caggtcatgg cctgcagcgc aatgcgcccc acggtggcgg tatcgcggat gcggcccacc
      361 ccggtcagca atgtggaaaa caccagcggc gcgatgatca tgcggatggc gcgcaggaag
      421 atagtagcga tcaagccgag gccgccggta acagcggcga gcgtctcttt gtccgcgatc
      481 gcggcgtggc agaaaagccc cacgcccgtg cccagcagca tggccaccag cacccacaat
      541 gtcatgccgc gcaacatcac aaagcccccg cgaaatcgcg gcgagcctag cacggcaaga
      601 cgcgccgtct agattttctg gtcgtactcg cccacttcgg gatgctggct cagtcgcgcg
      661 tcgatgtcgg cgaacatcgc ccgcatattg gcctccgacg ccgggctttc caccaccacc
      721 accaaggacg gcttgttgga ggaagcccgc accagacccc agctgccgtc ttccaaggtg
      781 acgcgcacgc cgttcaccgt gaccacgctg gcgatcttct ggcccagcag cgtttcgccc
      841 ttgtccttca gtgcggtgta ttccttcacc atcgcctcga ccacggtgta ttttttttca
      901 tcgggacaga agggcgccat ggtgggtgag ccccagcttt gcggcagccc gtcaaacagc
      961 gccgacagct tggcgccggg cccggccgca tccagcatct tcagcacctg gatgccggcg
     1021 acaatgccgt cgtcgtaacc gtgaccgata ggcggattga agaagaaatg gcccgacttt
     1081 tcaaaacccg ccagcgcgcc cagttcggca gtgcggcgct tgatataaga atggccagtc
     1141 ttccaataat cggtcttgac gccattggcc ttcagcaccg ggtcggtcag gtaaagccca
     1201 gtggatttca catccactac gaactgagca ttcttgtgcg tggcggaaag accgcgcgcc
     1261 agcatcaccc cgatcttgtc ggcgaagatt tcgcgccccg tatcgtccac cacgccgcag
     1321 cggtcgccat cgccgtcaaa gcccaggcaa agatcggcgc cctgttcttt cacccccaca
     1381 cccatggcgt gcagcatttc catgtcttcg ggattgggat tgtatttggg gaaggtgaaa
     1441 tccagcacat cgtccatgcc caccacttcg gcgccgatgc ggcgcagcgc ttcgggcgcg
     1501 aaggccccag cggtgccgtt gccgcaggcc gcgatcacct tgatggggcg cgacagtttg
     1561 tggcccttgg tcactgccgc gagatacgtc tcgcgcatgt cgggcacggc gacataggcg
     1621 ccgccggagc gttccttgcc cttgccgttc agcacaatgt ccttgatcac gttgatctca
     1681 tccggcccga aggtcagcgg ccgctgagcg cccatcttca cgccggtcca gccattctca
     1741 ttatggctgg cggtcaccat cgccaccgcg gggcagtcca gcgcaaattg cgcaaagtaa
     1801 gccaccggcg acagcgccag gccaatgtca tgcacttcgc agccggcccg cagcaggccg
     1861 atggtcagcg cctgcttgat cgacaatgaa taggaacggt agtcgtggcc ggtgacgact
     1921 ttgggctgaa cgccgatatc gtgcagataa gtgcccaagc ccaggcccag cgcctggatg
     1981 cccagcaggt tgatttcctt gccgaacagc cagcgcgcat catattcgcg aaaaccgttg
     2041 gcggtgacca agggcaggtt ttcgtaatcg gcggtattgg gaacaaggtc ggaacggggc
     2101 ttgatcacgt tatatctctg ttggaagcgc ggcagcttgg cccggctggg ggcaaaagcg
     2161 caacattgcg gcctgcgacc aattatggtc agcccggctc atgcggctcc aaactgccgt
     2221 cctggcgctc aaaacgcgga ttggagatgt cgaagctctc acagccgcat tgggggcagg
     2281 cggggatcag gtcgccttgc gaaaagcgca ccagctgatg gcagcgttcg cagcgatagt
     2341 tggaggactc gcgcgcgatc tcgccggttt tctcactcat accagagtcc attctcgatt
     2401 gtcgttagcc aacgcgggta tgctgcccgc gttcccgccc gcactgtttt tcgtcatggc
     2461 catgatatag ttggacaatg gacaacaata tcgccgcaaa gctgggcctg gcagagttgc
     2521 aaccgggctg ggtctggctg gtcggcgccg gtcccggtga tcccggcctg atcaccgcgc
     2581 tgggactgca ggcgctgtcc caggccgacg tcattctcta cgacgccttg gtggacgaga
     2641 cgctgctgac cctggcgacg gctgaaaaaa tctatgccgg caagcgcgcc ggcgtgaaga
     2701 gctgcaagca ggacgaaatc tccgacctgc tggtgacgct ggccaaagaa ggcaagcgcg
     2761 tgctgcggct gaaaggcggc gatcctttcg tgttcggccg cggcggcgag gaagcccagg
     2821 cgctggcgcg cgcgggtgtg cccttccgca tcgtgccggg gatcacggcc gggatcggcg
     2881 ggctggccta tgccggcatc cccgtcaccc atcgcgacac caaccacgca gtcaccttca
     2941 tcaccggcca cggcacggac ggcaagctga ccaaattgga ctgggcgtcg gtgtcgcgcg
     3001 gcgcgccgac cctggtgttc tatatggcgc gcaaattcgc gggcgagatc gcccaggcgc
     3061 tgctggcggc ggggcgcgga gccgatgaac ctgccgccat cgtcgccaat gcggcgcggc
     3121 ccaaccagca ggtgatcttc accaacttgg ccggattgga agcggccgca caaaccgcgc
     3181 ccgcgctttg catcatggtg gtcggcgaga atgtggcctt ggcaaaagaa ctcagttggc
     3241 tggcgaagac atctgcctga ggcgttccgg cagctgttcc atcaccgcgc ggcgctcggc
     3301 atcgccgagg gcggaccagg ccgcgatttc ctccaaggtc cgtccgcagc ccaggcacag
     3361 gcccgtgccg ggatcgcccg tgccgggatc gtaagtgcag attttcacgc atggcgtatc
     3421 cataaccctg catttatgcg gctttagatc gaaccggtac aatggcctta accgaggctt
     3481 aacagcgctt ctctagagtt ggcgggcagt ttcggaaaat cccactatgg caaaagcgca
     3541 gttccacaag aaccagcggg tttacgtgaa accggtcggc acctgggcgc tgatcgagca
     3601 tgtcgtgccg cactgggcca agggcctgga tgagcccatc cgcattcatt atgacgtggg
     3661 cctgggccgc gaattcgccg ccgaggaatt gctcagcgaa gaaccgctgg gcgacaagac
     3721 tcctagcgac acacaggcct ggcgcgtggt gcgggcccgc aacaaatggc agcccgccga
     3781 agattgcgcc cgccatccgg tgccgggcac ctatcccgtg gtcatca
//
LOCUS       DATMDK010000391         5491 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1796719,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000391 DATMDK010000000
VERSION     DATMDK010000391.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 5491)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5491)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5491
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1796719"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1513)
                     /locus_tag="VNN98_07495"
     CDS             complement(<1..1513)
                     /locus_tag="VNN98_07495"
                     /inference="COORDINATES: protein motif:HMM:NF014516.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RecN"
                     /protein_id="HWM61979.1"
                     /translation="MLAALTIRDIVLIEQAALEFAPGLNVLTGETGAGKSILLDSLGL
                     AVGGGAKGRASVRAGAAQGSATAVFEPEKNHAAWAMLRDQAMEGSEEIVLRRTLASDG
                     RSRAFINDEAVSVGLLKDLGSLLLEVHGQQDDRGLFDTATHRLLLDGFGGLNGDAQTV
                     AALFAELSAARAALEALKALAARAEAEADFVRAAASELSDFAPDVGEEERLAAERALG
                     MNAARIVEEVSSALESLSGERGAETGLAQALKKLSRMNEEARKIAAPAETALEQAYAL
                     AEEARRELDSLLSRLDSDTGSLERKEERLFALRALARKYGVTPDQLPATRDDFLAKQE
                     ALTAGGSQIKQAEAKVAAARDAYLAAARKLSKAREGAARKLEAAVAGELTPLKLGHAK
                     FRVAFEKLDDDKGAATGLERIAFEVATVEGAAFGSLTKIASGGELARFSLALKVALAQ
                     VSSPAAMVFDEVDRGVGGAVADAVGERLQRLAETTQVLLVTHSPQVAARAARHF"
     gene            complement(1529..2392)
                     /locus_tag="VNN98_07500"
     CDS             complement(1529..2392)
                     /locus_tag="VNN98_07500"
                     /inference="COORDINATES: protein motif:HMM:TIGR03302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamD"
                     /protein_id="HWM61980.1"
                     /translation="MISAARLKVFARAALLGGAMALLAGCSLFGGKDDETNNANKDAA
                     NYRERSVEQIYADGWRAINAGAWDVCAAQFNEVDRQHPYSVWARRAMLISAFCSYQSN
                     AYPQAIATADQYISLHPGSPEVAYAFYIKAISLYEQIVDIARDQSNTEGALVALQDVV
                     QRFPDTEYARDATLKIDLTNDHLAGKEMAVGRYYLSRGDYIGAINRFRTVVDQYQTTP
                     QIAEALERICEAYYSLGLDSEAQTAAAVLGRNYPGSGWYKDAYNILKGRNLKPLEDRK
                     SWISQAFHRIF"
     gene            complement(2546..3388)
                     /gene="lpxC"
                     /locus_tag="VNN98_07505"
     CDS             complement(2546..3388)
                     /gene="lpxC"
                     /locus_tag="VNN98_07505"
                     /EC_number="3.5.1.108"
                     /inference="COORDINATES: protein motif:HMM:TIGR00325.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008759 - UDP-3-O-[3-hydroxymyristoyl]
                     N-acetylglucosamine deacetylase activity [Evidence IEA];
                     GO_process: GO:0009245 - lipid A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-acyl-N-acetylglucosamine deacetylase"
                     /protein_id="HWM61981.1"
                     /translation="MTPRRTLAHPVTASGTALHSGVPVTMTLSPAAGGSGIVFRRTDL
                     NADIPARYDLVSETRLGTVIGSGSAKVGVVEHLMAAAAGLEIDDLLVSLDGPEPPILD
                     GDALSYLTLLESGGTAEQAQTRLAIKLRKPVTVESGEARASLLPDDALSYSYELSFPV
                     IGEQYYAFAFSRAGFKAEIAPARTFGFLSELEALNKMDLAKGASLANTLALDASGVVN
                     HERQRFADEFVRHKILDAIGDMALAGAPLIARFEGRKSGHTTNNALLRALFADPSNYE
                     MAEL"
     gene            3485..4408
                     /locus_tag="VNN98_07510"
     CDS             3485..4408
                     /locus_tag="VNN98_07510"
                     /EC_number="3.4.23.-"
                     /inference="COORDINATES: protein motif:HMM:NF025341.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004190 - aspartic-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="retroviral-like aspartic protease family
                     protein"
                     /protein_id="HWM61982.1"
                     /translation="MRWICAFVALLTLAGSAHATLPAEQSYRIDRKGRLVTDVYVDGQ
                     GPFVFVIDTASSRSLMFEHVRQKLGLGQSQPQRMTVYGINDIADVMAVKPDELRIAGE
                     AVHGLTMGVLPETEGAGPDGVLGIDALSRYFVVLDRSAMRIKFLPPGEDSAKPYTNWT
                     KVQLTPRALKNFPIQFWYLKTRFNGSTLTALFDLGASTTMMNWQAAERLGARKIHYAA
                     IYGPPPVELQDVLGKLAPAVRIDGLEIRLLSLSWNKQSSLVADAPVFDYFDLDELPAA
                     IVGPGLLRNNSLAIDFAGQKLYVGPTLTNGG"
     gene            complement(4468..>5491)
                     /locus_tag="VNN98_07515"
     CDS             complement(4468..>5491)
                     /locus_tag="VNN98_07515"
                     /inference="COORDINATES: protein motif:HMM:NF023746.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61983.1"
                     /translation="ITELQQFVHTLIVIPNQNLFRVANERTTMAQAFAMADEVLHAGV
                     RGVTDLIVMPGLINLDFADIKSVISEMGKAMMGTGEAEGEDRAMKAADMAISNPLLDD
                     VTMKGAKGVLINITGGPDLMLFEVEQAANRIRSEVDPDANIIFGNTILDDMEGRIRVS
                     VVATGIDADQMRMPLPEKVRPLHPHLNLKQPARVAQPVPVAAAPLANPVHATMEALAS
                     QMGAEKSPAEDYILGGEDAPEIPAAAAKYPATEAYRPLEQQPLATRTAEPEKKSGWGF
                     FGRKKAPEMRAEPMPEPRVAAPRATAQTMPAPAEMPRNNAEDLFPDHKRDEQFEIPAF
                     LRRQSN"
BASE COUNT          930 a         1768 c         1753 g         1040 t
ORIGIN      
        1 ggaagtggcg cgcggcgcgg gccgccacct ggggcgaatg ggtgaccagc aagacttgcg
       61 tggtttcggc caggcgctgc agccgttcgc ccaccgcatc ggccaccgcg ccgcccacgc
      121 cccgatccac ttcgtcgaac accatggcgg cgggggatga cacctgcgcc agcgccactt
      181 tcagcgccag ggagaaacgc gccagctcac cgcccgaggc gattttcgtc aggctgccga
      241 aagcggcgcc ctccacagtg gcgacttcaa aggcgatgcg ttccaacccg gtggcggcac
      301 ccttatcgtc atccagcttt tcgaacgcga cgcggaattt ggcgtggccc agtttcagcg
      361 gtgtcagctc gccggccacg gcggcctcca gcttgcgggc ggcgccctcg cgcgccttgg
      421 acaatttgcg cgcggcagcg agataagcat cgcgggcggc ggcaaccttg gcctccgcct
      481 gtttgatctg gctgccgccc gccgtcaacg cttcctgctt ggccaggaaa tcatcgcggg
      541 tagcgggcag ttggtccggc gtcacgccat atttgcgcgc cagggcacgc agcgcgaaca
      601 gccgctcttc cttgcgctcc aaactcccgg tgtcgctatc cagccgcgac agcagactgt
      661 ccaactcccg ccgggcctct tccgccaagg cataggcctg ttccagcgcc gtttcggcgg
      721 gggcggcgat cttgcgcgcc tcctcattca tgcgcgaaag cttcttcagc gcctgtgcca
      781 ggccggtttc cgcgccgcgc tcacccgaca gcgattccag cgccgaggaa acttcttcga
      841 ctattcgcgc tgcgttcatg cccaaggcgc gttccgcggc caaccgctcc tcctcgccca
      901 cgtccggcgc gaagtcggac agttcggacg ccgcagcgcg gacgaaatcg gcttcggctt
      961 cggcgcgggc ggccagcgcc ttcaacgctt ccagcgcggc gcgggccgcg gacaattcgg
     1021 cgaatagcgc ggccacggtc tgcgcgtcgc cgttcaagcc gccgaaccca tccagcaaca
     1081 ggcggtgggt ggccgtgtcg aacaacccgc gatcgtcctg ctggccatgc acttccaaga
     1141 gcaggctgcc cagatccttg agcagaccca cactcaccgc ctcgtcattg atgaaggcgc
     1201 ggctgcgccc gtcgctggcc agggtccggc gcaatacgat ttcttcgctg ccttccatcg
     1261 cctggtcgcg caacatcgcc caggcggcat ggtttttttc cggctcgaac accgccgtgg
     1321 ccgagccctg ggcggcgccg gcgcgcacgc tggcgcggcc cttggcgccg ccgcccactg
     1381 ccaagcccag cgaatcaagc agaatggatt tgcccgcccc ggtttcgccg gtcagcacgt
     1441 tcaggcctgg cgcgaattcc agcgccgcct gctcgatcag cacgatatcc cggatagtca
     1501 gcgccgcgag cacgggtgct ccgaatcgtc agaaaatgcg atggaaagcc tgactgatcc
     1561 aggacttcct gtcttcaagc ggcttcaggt tacggccctt caagatgtta taggcgtcct
     1621 tgtaccagcc cgaaccgggg taattgcgcc ccagcacggc ggcggcggtc tgcgcctcgc
     1681 tgtccaggcc caggctgtaa taggcctcgc agatgcgctc caaggcttcg gcgatctgcg
     1741 gcgtggtctg atactggtcc accacggtgc ggaaacggtt gatggcgccg atataatcgc
     1801 cgcgcgacag gtaataacgg cccaccgcca tttccttgcc cgccagatgg tcgttggtca
     1861 ggtcgatctt gagagtggcg tcgcgggcat attcggtgtc gggaaagcgc tgcaccacgt
     1921 cctgcagcgc caccaatgcg ccttcggtat tggactggtc gcgggcgatg tccacgatct
     1981 gctcatacag cgaaatcgcc ttgatgtaga aggcataggc cacttccggg ctgcccggat
     2041 gcaatgagat atactggtcg gcggtggcga tagcctgcgg ataggcattg gactgatagg
     2101 agcagaaggc gctgatcagc atggcgcggc gggcccacac cgaataggga tgctggcggt
     2161 ccacttcatt gaactgggcg gcgcagacgt cccaggcccc cgcattgatc gcccgccaac
     2221 cgtcggcata aatctgttca acgctgcgct cgcggtaatt ggcggcgtcc ttgttggcgt
     2281 tgttggtctc atcgtcctta ccgccgaaca gcgagcagcc ggccaacaag gccatggccc
     2341 cgcccagcag ggcggcgcgt gcaaaaacct tcaggcgggc ggcagagatc attgctatcc
     2401 ttgtggcgca aaaagtaagt atttcaatgg cttacttggg catgccgccc gtatcgcgca
     2461 tcatgccctt tatatacagc ggcagcggcg attcaggaaa gcgcagtttt cctccccgct
     2521 tttcgcagcg cgccaaccgg caggattaaa gttccgccat ctcgtagttg gaggggtccg
     2581 cgaacagcgc ccgcagcagg gcattgttgg tggtatggcc ggatttcctg ccttcgaagc
     2641 gggcgatcag cggggcgccc gccagcgcca tgtcgcctat ggcatccagg atcttgtgac
     2701 gcacgaactc gtcggcaaag cgctgacgct cgtgattgac cacgccggac gcgtccagcg
     2761 ccaaggtatt ggccagcgag gcgcccttgg ccaggtccat cttgttcagc gcttccaact
     2821 cgctgaggaa tccaaaagtg cgcgccggag cgatctcggc cttgaagccg gcgcggctga
     2881 aggcgaaggc gtaatattgc tctccgatca cgggaaagct gagttcatag ctataggaca
     2941 gcgcgtcgtc cggcagcagc gaggccctgg cctcgccgct ttccaccgtc acgggtttgc
     3001 gcagcttgat cgcaaggcgc gtctgcgcct gttccgccgt gccgcccgat tccagcaggg
     3061 tgagatagga taaggcatcg ccgtccagga tggggggttc ggggccatcc agactcacca
     3121 gcagatcgtc gatctcaagc cctgccgccg cggccatcag atgctcgacc acgcccacct
     3181 tggcactgcc cgagccgatt accgtgccca gccgggtctc gctcaccagg tcgtagcggg
     3241 cgggaatgtc ggcgttcagg tcggtgcggc gaaagacgat gccgctgccc ccggcggcgg
     3301 gcgacagggt catggtcacc ggcacccccg aatgcagtgc ggtgccgctg gcggtgaccg
     3361 gatgggcaag ggtgcggcgg ggagtcatgg cagcagtgta gcccgaacgc caaaggcgcc
     3421 gaaagcggtt gcggcccggc gccggcaggc gtttacttcc ccgtcggctt agggagtaag
     3481 ccgtatgcgt tggatttgcg cctttgtcgc tttgctaacg ctggccgggt ccgcccacgc
     3541 gactttgccc gccgaacaat cttatcgcat cgaccgtaaa ggccggctgg ttaccgacgt
     3601 ctatgtcgac ggccaggggc catttgtctt tgtgatcgac actgcctcgt cgcgctcgct
     3661 gatgttcgag catgtgcgcc agaagctggg gttgggtcaa tcccagccgc aacggatgac
     3721 ggtttatggc atcaacgata tcgccgatgt gatggcggtg aagccggatg aattacgcat
     3781 cgcgggcgaa gcggtccatg gcctgaccat gggcgtactg cccgagaccg aaggcgccgg
     3841 tcccgatggc gttctgggca tagatgccct gtcgcgctat ttcgtggtgc tggaccgcag
     3901 cgcgatgcgc atcaaattcc tgccaccggg cgaagactcc gccaagccct atacgaattg
     3961 gacgaaagtt caattgacgc cacgcgcgct gaaaaacttt cccatccaat tctggtatct
     4021 caagacccgc tttaacggca gcactctgac cgccctgttc gatctgggcg ccagcaccac
     4081 catgatgaac tggcaggccg ccgagcgatt gggtgcgcgc aaaatccatt acgcggccat
     4141 ctatggcccg ccgccggtgg aactacagga cgtgctgggc aagctggcgc cggccgtccg
     4201 gatcgacggg ctggaaattc ggctgctgag cctgtcctgg aacaagcagt cgtccctcgt
     4261 cgccgatgct ccggtgttcg attatttcga tctggatgaa ctgccggcgg cgatcgtggg
     4321 gccggggctg ctgcgcaaca attctctggc gatcgatttc gcgggccaga aactgtatgt
     4381 cgggccgacg ctgacaaacg gcggctgatg cccctcaaaa gaaaagggcg gcccaagccg
     4441 ctcttttcga ttctttgctt cagctgatca gttcgattgg cggcgcaaga aggccgggat
     4501 ttcaaactgc tcatcccgct tgtggtccgg gaacagatct tcggcattgt tgcgcggcat
     4561 ttccgccggg gctggcatgg tctgggctgt ggcgcgcggt gcggcaacgc gcggctccgg
     4621 catcggctcg gcccgcattt cgggcgcctt cttgcggccg aagaagcccc agccgctttt
     4681 cttttccggc tcggcggtgc gggtggccaa gggctgctgt tccagcggac gataggcttc
     4741 ggtggcgggg tacttggcag ccgcggccgg gatttccgga gcatcttcgc cgcccaggat
     4801 atagtcctcg gccgggctct tttcggcgcc catctggctg gccagcgcct ccatggtggc
     4861 atgcaccgga ttggccagcg gcgcggccgc gaccggcacg ggctgcgcca cgcgggccgg
     4921 ttgcttgagg ttcagatgcg gatgcagcgg ccgcactttt tccggcaggg gcatgcgcat
     4981 ctggtcggca tcgatgccag tggcgaccac tgaaacgcgg atgcgccctt ccatatcgtc
     5041 caggatggtg ttgccgaaga tgatgttggc gtcgggatcc acttccgaac ggatgcggtt
     5101 ggcggcctgc tcgacctcga acagcatcag gtccggaccg ccggtgatgt tgatcaagac
     5161 gcccttggcg cccttcatcg tcacatcatc cagcagcgga ttggagatcg ccatatcggc
     5221 ggccttcatg gcgcggtctt cgccctcggc ctcgccggtg cccatcatcg ccttgcccat
     5281 ctcgctgatc accgacttga tgtcggcgaa atcgagattg atcaggcccg gcatcacgat
     5341 caggtcggtg acgccgcgca cgccggcatg cagcacttcg tcggccatgg caaaagcttg
     5401 tgccatggtg gtgcgctcat tggcgacgcg gaacaggttc tggttgggaa tgacgatcag
     5461 ggtatggacg aactgctgca gttcggtgat g
//
LOCUS       DATMDK010000392        11018 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2468852,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000392 DATMDK010000000
VERSION     DATMDK010000392.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 11018)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11018)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11018
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2468852"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..423)
                     /locus_tag="VNN98_07520"
     CDS             complement(<1..423)
                     /locus_tag="VNN98_07520"
                     /inference="COORDINATES: protein motif:HMM:NF015338.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease/exonuclease/phosphatase family
                     protein"
                     /protein_id="HWM61984.1"
                     /translation="MQKLKIATWNVNSVRHRINLVTRFLRDEQPDVLCLQETKVLNEL
                     FPAEAFRKLGYGHQAIHGQKAYHGVAVLAKKPFRETGAQDFCREGHARHMGVTLDNGV
                     ELHNFYVPAGGDIPDPKRNDKFAHKLHFLQAMEKFFARR"
     gene            694..819
                     /locus_tag="VNN98_07525"
     CDS             694..819
                     /locus_tag="VNN98_07525"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61985.1"
                     /translation="MTNFRIQIPQNSFNNRVAEAFQVATIALVGVLGILTFAATI"
     gene            complement(926..1981)
                     /gene="tsaD"
                     /locus_tag="VNN98_07530"
     CDS             complement(926..1981)
                     /gene="tsaD"
                     /locus_tag="VNN98_07530"
                     /EC_number="2.3.1.234"
                     /inference="COORDINATES: protein motif:HMM:TIGR03723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     transferase subunit TsaD"
                     /protein_id="HWM61986.1"
                     /translation="MTGKPLTILGIETSCDETAASVVRGRPPGPGAILSNVIFSQTEA
                     HAPYGGVVPEIASRAHLEILDSIIERALDEANITLAELDGIAATAGPGLIGGVMVGLT
                     TAKALALATGKPLLAVNHLMGHALTARLSHGVEFPFLLLLVSGGHCQLVGVGGVDDFR
                     LYGSTIDDAVGEAFDKTAKILGLPYPGGPAVEAAARSGNPRAYDLPRPLLEKKGSVRA
                     GADFSFSGLKTALRQLAQTEISVEDASASFQAAVIDILCDRSRIAMAMFRSDFPSSNR
                     LVVAGGVAANQAIGLGLARLCEAEGFTARIPPPRLCTDNAAMIAWAGVERLAAGGTGD
                     ALSTSPRARWPLATGSI"
     gene            2018..2719
                     /locus_tag="VNN98_07535"
     CDS             2018..2719
                     /locus_tag="VNN98_07535"
                     /EC_number="4.2.1.75"
                     /inference="COORDINATES: protein motif:HMM:NF014641.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004852 - uroporphyrinogen-III synthase
                     activity [Evidence IEA];
                     GO_process: GO:0006780 - uroporphyrinogen III biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0006782 - protoporphyrinogen IX
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III synthase"
                     /protein_id="HWM61987.1"
                     /translation="MRILVTRPVEDGEDIAAHLAEMGHQALLAPLLTVRFHDGPPLEH
                     SGPGLEDVQAILATSANGVRALARRTARRDFSIFAVGPQTAEEARNCGFTEIKNADGD
                     AKALAEAATRWASRKGVLLHVCGEDAPGTLAENLSLRGFQVRRVVLYAIEPAVQLPPQ
                     AVAALKAGALDAAMFFSPRSARIFGVLADGLPTENLAALCISAATAQALVSLSFARVA
                     VAARPNQAAMLALVE"
     gene            2882..4417
                     /locus_tag="VNN98_07540"
     CDS             2882..4417
                     /locus_tag="VNN98_07540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019965835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="circularly permuted type 2 ATP-grasp protein"
                     /protein_id="HWM61988.1"
                     /translation="MQTSRMQHEVFANTEDFGGPDIVAGPARVSRPGVDAPYANYALG
                     KPYDEMFAPDGQPRAPYATIDSRVSSLPLEELNRRQQACEQSFLHQGITFTVYNDNKA
                     TERIIPTDLLPRIVTAKEWDRIERGLTQRIHALNLFLRDIYTDGRVLKDGVIPRSMIY
                     GSKHYRREMRGIPVPHGAYVNICGSDLIRNEAGDFVVLEDNLRVPSGVSYMLANRDVA
                     RRAFPAVFRSMGVRPIEHYPLELLATLRSLTPFHEDVSIAILTPGVFNSAYFEHAFLA
                     RQMGVELVEGRDLLINDNVVYTRTTSGLKRIDVIYRRIDDDFIDPLIFREDSALGVPG
                     LFNAYRAGNVMIANALGTGVADDKAVYAYVPRLIRYYLAEEPILDNVETYLCREDKSL
                     QHVLANLDRLVVKAVGESGGYGMLIGPHASQTERDDFAEKIRADPENYIAQPTIQLST
                     APTFVGNGIEARHVDLRPFILHGAETKLVPGALTRVALKRGSLVVNSSQGGGSKDTWV
                     LSQ"
     gene            4611..5555
                     /locus_tag="VNN98_07545"
     CDS             4611..5555
                     /locus_tag="VNN98_07545"
                     /inference="COORDINATES: protein motif:HMM:NF016086.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-E domain-containing protein"
                     /protein_id="HWM61989.1"
                     /translation="MLSRVADSLYWMSRYIERAEHTARLIAVKLESMVEQTPEDAAAS
                     WARVTESLTGEKTVPLHLDAFAITRRLAFDRDNDNSLITSLALARNNARQVREALSNE
                     VWENLNRLYLRLTPVTMDSIWVHTPARLFREVLEEMHALEGVTYSTLSHGEGWYFLEL
                     GRHIERVQQLGRLLDVHFSAAQNSENSPKYFDWLVLLKFCTAFEPYTKQYTASIRPQK
                     IAEFLLFDSEFPHSICFSVDRVTEALARVAPGAPPARRAAVERLAGRLKAAVDFGQVD
                     ELMSGGVAAFIADITKQCEQIHKALYSSYITYGAETVL"
     gene            5743..6714
                     /locus_tag="VNN98_07550"
     CDS             5743..6714
                     /locus_tag="VNN98_07550"
                     /inference="COORDINATES: protein motif:HMM:NF013961.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglutaminase family protein"
                     /protein_id="HWM61990.1"
                     /translation="MFYSIRHVTRFRYSGPVRESVMELRMQPRSEGPQTLRSFQISTN
                     PRAQLYAYTDHLGNAVYHFNLLREHEELRIEAQATVELAAMPVWPDTLDALEWSRYND
                     FNLTDDHFDMLEPSRFARFSPELESFMKIADLQKPVGDPFTALRTLQRGIYDSFEYES
                     GVTEVNSPIEVALEQRRGVCQDFAHIMTAIARAWGIPCRYVSGYLYHKGSRDRSSANA
                     THAWVEAYLPSLGWVGFDPTNNIMAGERHVRAAVGRDYADVPPTRGTYKGGADSELSI
                     AVSLEPTQAPVRHEDFLKVARPMASPTPTASMPERLYHQQQQQQQQE"
     gene            6766..7068
                     /locus_tag="VNN98_07555"
     CDS             6766..7068
                     /locus_tag="VNN98_07555"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61991.1"
                     /translation="MTKRKKRELGGRLEVDGYPLRWTLKSEQIWDPKGDHVGLRLSVE
                     REDETRRELVLEYPFHDGGRTLRPDINPHTLESDIRRAMEAGWKPKSRGRPFFFQL"
     gene            7175..7570
                     /gene="flbT"
                     /locus_tag="VNN98_07560"
     CDS             7175..7570
                     /gene="flbT"
                     /locus_tag="VNN98_07560"
                     /inference="COORDINATES: protein motif:HMM:NF001995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0048027 - mRNA 5'-UTR binding [Evidence
                     IEA];
                     GO_process: GO:0006402 - mRNA catabolic process [Evidence
                     IEA];
                     GO_process: GO:1902209 - negative regulation of
                     bacterial-type flagellum assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis repressor FlbT"
                     /protein_id="HWM61992.1"
                     /translation="MPLKLSLKPGEKFVLNGAVLANGDKRTSLVIQNKACVLREKDIM
                     QPEGANTPARRIYLAIMMMYLDGEASEEPYNEFALRMTEFMGAIRTPAILSACVDISR
                     DVAQGAYYKALIACRKLFDLEQERLSYEP"
     gene            7560..7907
                     /gene="flaF"
                     /locus_tag="VNN98_07565"
     CDS             7560..7907
                     /gene="flaF"
                     /locus_tag="VNN98_07565"
                     /inference="COORDINATES: protein motif:HMM:NF018959.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0044781 - bacterial-type flagellum
                     organization [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis regulator FlaF"
                     /protein_id="HWM61993.1"
                     /translation="MSLKAYKAAQVATEDPRLTEYRLFGQVTGALLNAKQAGAAGAPL
                     VEAVDWNRRLWRTLAADCMDDRNTLTQDVRAKIISLSLWVAKYSRSVTREKAPLDPLI
                     EINRTIMQGLQAS"
     gene            8286..9113
                     /locus_tag="VNN98_07570"
     CDS             8286..9113
                     /locus_tag="VNN98_07570"
                     /inference="COORDINATES: protein motif:HMM:NF012874.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0071973 - bacterial-type
                     flagellum-dependent cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin"
                     /protein_id="HWM61994.1"
                     /translation="MSFSVNTNTGAQVALQYLNATQGQLDQTQSAINSGLKVATAKDD
                     GAIYAIAQNQRGAVAGFSSVINSLNNGSSSIDVALSAGQSISDLLIQLKTKALSAADP
                     SLDTASRQALNANFTALRDQITTIVKNAVFNNFNLVDGSTVQVQALASSDGTRRITVQ
                     AQNMKLSGSIVTIKTTSTISTQAKASALIAVIQTSLTNVNSALAKLSSGAAKFSIQAT
                     FSQKLSDTLTAGIGNLVDANMAQESAMLQSLQVKQQLGVQALSIANQAPQTILSLFK"
     gene            9708..10535
                     /locus_tag="VNN98_07575"
     CDS             9708..10535
                     /locus_tag="VNN98_07575"
                     /inference="COORDINATES: protein motif:HMM:NF012874.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin"
                     /protein_id="HWM61995.1"
                     /translation="MSFSVNTNSGALVALQYLSATQGQLNQTQSAINSGLKVANARDD
                     GAIYAIAQNQRGQVAGYSAVINSINNATSSVDVALSAGQSISDLLIQLKTKALAAADS
                     SLDTASRQALNANFTALRDQITTIVSNAVFNGFNLVNGSTGQITALASADGTRRITTA
                     AQNMKLSGSIVTMKSTATISTQAKASTLVATIQTSLTNVNSALAKLSSGAAKFSIQAT
                     FAQKLSDTLTTGIGNLVDANMAQESAMLQSLQVKQQLGVQALSIANQAPQTILSLFR"
     gene            complement(10792..>11018)
                     /locus_tag="VNN98_07580"
     CDS             complement(10792..>11018)
                     /locus_tag="VNN98_07580"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61996.1"
                     /translation="VTLLMQGGTCPVAGSSDGAVREIATRAASALGLEGTPVVCEIVM
                     HQGVPHVTEISARLCGPDFLDSAIALALGG"
BASE COUNT         2141 a         3522 c         3228 g         2127 t
ORIGIN      
        1 tcggcgcgcg aagaatttct ccatcgcctg caggaaatgc agcttgtggg cgaacttgtc
       61 gttccgcttg gggtcgggaa tgtcgccgcc ggcgggcaca tagaaattgt gcagctcgac
      121 gccattgtcc aaggtcacgc ccatgtgacg cgcgtgccct tcgcggcaga aatcctgggc
      181 gccggtctcg cggaacggtt ttttcgccag caccgccacc ccgtgatagg ccttctggcc
      241 gtggatcgcc tgatggccat agcccagctt gcggaaggcc tcggccggaa acagctcgtt
      301 cagcaccttg gtctcctgca ggcacaggac atcgggctgc tcgtcgcgca gaaaacgggt
      361 caccagattg atccggtggc gcacggaatt gacgttccag gtggcgattt tcaacttttg
      421 catcccttct atgctgcaac tgcacagcgc gttgcccgtg atagccagtt tattaccatt
      481 acagcgactt caaaggctta cagcaaaatt tcacactgaa tattactaaa aacgcataac
      541 tagcagtcat tgtattgcaa tgcttggggg tctatatcgc agtgcaacaa agagttcttg
      601 agagacagca aaaatacatt acaaggtacc ttgcgtaaca cggtagcttg cggtacaagt
      661 ctctcaggct ttgatttcac aaaggagtat cccatgacca acttccgcat tcagatcccg
      721 caaaacagct tcaacaatcg cgtcgccgag gccttccagg tcgccaccat cgccctggtc
      781 ggcgttctcg gtatcctgac cttcgccgcg acgatctaac taaatctgcg ccaagggcca
      841 tctagccccc ggcggcggag ccgccaataa taaatagagc cggtggccaa cggccaccgg
      901 gctctgccgg cggagccgcc aataatcaaa tggagccggt ggccaaaggc caccgggctc
      961 taggtgaggt cgagagggca tcgcccgtgc ctccggccgc cagccgttcc acccccgccc
     1021 aggcgatcat cgccgcattg tcggtgcaga gcctgggggg tggaatacgg gcagtgaagc
     1081 cctccgcctc gcatagccgg gccaggccca agccaatcgc ctgattggcg gccacgccgc
     1141 ccgccaccac cagcctgttc gaactgggaa aatcgctgcg gaacatcgcc atggcgatgc
     1201 ggctgcggtc gcagagaatg tcgatcaccg ccgcctggaa actggcgctg gcgtcctcga
     1261 cactgatttc cgtttgcgcc aactggcgca gcgccgtctt caagcccgaa aaagaaaaat
     1321 ccgcgcctgc gcggactgac cccttctttt ccaacaaagg acgcggcaaa tcataggcgc
     1381 ggggattgcc gcttctggcc gccgcttcca ccgcggggcc gccgggatag ggcaggccca
     1441 atatcttcgc ggtcttgtcg aaggcttcgc ccaccgcatc gtcgatcgtg ctgccgtaaa
     1501 ggcggaaatc atcgacgccg cccacgccga ccaactggca atggccgccc gataccaaaa
     1561 gcagcaggaa tggaaattcc acgccgtggc tcagacgcgc cgtcaaagcg tggcccatca
     1621 gatgattgac cgccagcagc ggcttgcccg tggccaaagc cagtgccttg gcggtggtca
     1681 gtcctaccat cacgcccccg atcaagccgg gcccggcggt ggcggcgata ccgtccagtt
     1741 cagccaaagt gatattggcc tcgtccaggg cgcgttcgat gatggagtcc aatatttcca
     1801 gatgggcacg ggaggcgatt tccggcacca ccccgccata gggggcatgg gcctcggtct
     1861 ggctgaaaat cacgttggac aggatagcgc caggccctgg ggggcgcccg cgcaccaccg
     1921 aagccgcggt ttcgtcgcag ctggtttcga tgcccagtat ggtgagaggc ttgcctgtca
     1981 tgggccgctg ctttacgccg aataaaaggg agcgaccatg agaattttgg tcaccagacc
     2041 agtggaagac ggcgaagata tcgccgcaca cctggcggaa atgggtcatc aggcgctgct
     2101 ggcgccgctg ctgaccgtgc gcttccatga cggcccacct cttgaacatt cggggccggg
     2161 ccttgaggat gtgcaagcca ttttggccac cagtgccaac ggcgtccgcg ccctggcccg
     2221 ccgcacggcg cggcgcgatt tctccatttt cgcggtgggt ccgcagactg cggaagaagc
     2281 gcgcaattgc ggattcaccg agatcaagaa cgccgacggt gatgccaagg cgctggcgga
     2341 agcggccacc cgctgggcgt cgcgaaaagg tgtgctgctg catgtctgcg gcgaagacgc
     2401 gccggggacc ttggcggaaa atctcagcct gcgcggtttt caggtgcgcc gcgtggttct
     2461 gtacgcgatc gaaccggcgg tgcagctgcc gccccaggcc gtcgccgcct tgaaagccgg
     2521 tgcgctggat gcggcgatgt tcttctcgcc gcgcagtgcg cgcatcttcg gcgtgctggc
     2581 cgatggtctg cctacggaaa acctggcagc gctgtgcatc agcgcggcga cggcgcaggc
     2641 tttggtctcg ctatccttcg cccgggtggc ggtggcggcg cggcccaatc aggcggccat
     2701 gctggcgctg gtagaataac ctactgaata ataaagatat tctctttagg gcaacgagca
     2761 atatcgccca ggccgggcag gccagcagcc gctctgcgcc ctggcctttc accgctctgt
     2821 cctgcggctt ttgcgcatta tccgaaaatg aaagcagcgc ttgcgaggag ccccgccctc
     2881 tgtgcagact tcgcgtatgc agcatgaagt tttcgccaat acagaagact ttggcggacc
     2941 cgatatcgtg gcggggccgg cgcgggtttc ccgtcccggg gtggatgcgc cctatgccaa
     3001 ttacgcgttg ggcaagccct atgacgagat gttcgcaccc gacggccagc cgcgcgcgcc
     3061 ttatgccacc atcgattcgc gtgtttcctc cctgccgctg gaagaactga atcgccgcca
     3121 gcaggcttgc gagcaaagct tcctgcacca gggcattacc ttcaccgtct ataacgacaa
     3181 caaggccacc gagcggatca ttcccaccga cctcttgccg cgtatcgtca cggccaagga
     3241 atgggaccgt atcgagcgcg gcttgaccca gcgcatccat gccctgaatc ttttcttgcg
     3301 cgatatctat accgatgggc gggtgctgaa ggatggggtg ataccgcgct ccatgatcta
     3361 tggctccaaa cattaccgcc gcgagatgcg cggcatcccg gtgccgcacg gcgcctatgt
     3421 gaacatctgc ggcagcgatc tgatccgcaa cgaagccggc gactttgtgg tgctggaaga
     3481 caatctgcgc gtgccttcgg gcgtcagcta catgttggca aatcgcgatg tggcgcggcg
     3541 tgcttttccg gcggtgttcc gctccatggg tgtgcgcccg atcgagcatt atccgctgga
     3601 attgctggcg accttgcgct cgctcacccc ttttcacgaa gacgtttcca tcgcgatcct
     3661 gacgcctggc gtgttcaact ccgcctattt cgagcacgcg tttctggccc gccagatggg
     3721 ggtggagctg gtggaaggcc gcgatctgct gatcaatgac aatgtcgtct atacccgcac
     3781 cacttcgggg ctgaagcgca tcgatgtcat ctatcgccgc attgatgacg atttcatcga
     3841 tccgctgatc ttccgcgaag attcggcgct gggcgtaccg ggcctgttca acgcctatcg
     3901 cgccggcaat gtgatgatcg ccaatgcgct gggcaccggc gtggccgacg acaaggcggt
     3961 ctatgcctat gtgccacgcc tgatccgcta ttatctggcg gaagagccga ttctggacaa
     4021 tgtcgagact tacctttgcc gcgaagacaa atcgctacag catgtgctgg ccaatctcga
     4081 cagactggtg gtcaaggcgg tgggcgaaag cggcggctat ggcatgctga tcggtccgca
     4141 tgcctcccaa accgagcgcg acgactttgc cgagaagatc agggccgatc cggaaaatta
     4201 catcgcccag cccaccatcc agctttccac cgcccccacc tttgtcggca acggcatcga
     4261 agcgcggcat gtcgatctgc ggcccttcat cctgcacggc gccgagacca agctggtgcc
     4321 cggcgccctg acccgcgtcg cccttaagcg tggcagcctg gtggtgaatt ccagccaagg
     4381 cggcggttcg aaagacactt gggtgctcag tcaatgagcc aatctctcac cattcccccg
     4441 atgtcatggc ccgcaaatgc gggccaccca ggtgatgccg aattcggtgc cgaaaaatgg
     4501 gtcgatattc ttttcttcga gttcaccgct gttcccaact gggtggcccg cacggagttt
     4561 acactccggc cgcgcttcgc gcggaccggg gtggcgggcc atgacatttc atgctgagcc
     4621 gcgtcgcaga ttccctctac tggatgagcc gctatatcga gcgggccgag cataccgccc
     4681 ggctgatcgc ggtgaagctg gaatccatgg tggagcaaac cccggaggac gccgccgcca
     4741 gttgggcgcg ggtgaccgaa tccctgaccg gcgagaagac cgtgccgctg catctggacg
     4801 ctttcgccat cacccgcagg ctggccttcg accgcgacaa tgacaattcg ctgatcacct
     4861 ccctggcgct ggcgcgcaac aatgcccgcc aggtgcgcga ggcactgtcc aatgaagtgt
     4921 gggaaaacct caaccgcctt tacctgcgcc tgacgccggt gacgatggat tcgatctggg
     4981 tccatacgcc tgcaaggctg ttccgtgagg tgctggagga aatgcatgcc ctggagggcg
     5041 tgacctattc caccctcagc cacggcgaag gctggtactt tctggagctg ggccgccata
     5101 tcgagcgggt gcagcaactg ggccggctgc tggacgtgca tttcagcgcc gcccagaata
     5161 gcgagaacag ccccaaatat ttcgactggc tggtgctgct gaaattctgc accgcctttg
     5221 aaccttacac caaacagtat accgcctcga tccggccgca aaagatcgcc gaattcctgc
     5281 tgtttgattc cgaatttccc cactccatct gcttttcggt ggaccgcgtg accgaggcct
     5341 tggcgcgggt ggcaccgggc gctccgccgg cgcgccgcgc ggcggtggaa cggctggccg
     5401 gccggctgaa agccgcggtg gatttcggcc aggtcgatga attgatgtcg ggcggcgtcg
     5461 ccgccttcat cgccgacatc accaaacagt gcgaacaaat ccataaggcg ctttactcgt
     5521 cctacattac atatggcgcg gagaccgtgc tttgatgttt gacccccatc cgtcgcaact
     5581 cgaatcggct ccgccgatat ctcgttgcgc cgttcggcca tcttggccga tggcctcact
     5641 ccccctttcc gtgcttcgca cgaaggggga aggaagctgt cggatgctga cggtcgcgcc
     5701 gcggaatgcg gcgctcgcgc tacacatgcg tacggtgctt tgatgtttta ttccatccgc
     5761 cacgtcacgc gctttcgcta ttccggcccg gtgcgcgagt cggttatgga gctgcggatg
     5821 cagccgcgct cggaagggcc ccagaccctg cgcagcttcc aaatctccac caatccccgc
     5881 gcccagctct atgcctatac cgatcacctg ggcaatgcgg tctatcactt caatttgttg
     5941 cgcgagcatg aagaactgcg gatcgaagcc caggcgacgg tggagctggc ggcgatgccg
     6001 gtatggccgg acacgctcga tgccctggaa tggagccgct acaacgactt caatctcacc
     6061 gacgatcatt tcgacatgct ggagccgtcc cgcttcgccc gcttctcgcc cgagctggaa
     6121 agtttcatga agatcgccga cctgcaaaag ccggtgggcg atcctttcac ggcgctgcgc
     6181 accctgcagc gcggcatcta cgattccttc gaatatgaat ccggcgtcac cgaagtgaat
     6241 tcacccatcg aagtggcgct ggaacagcgc cgcggcgtct gccaggactt cgcccatatc
     6301 atgacggcga tcgcgcgggc ctggggcata ccctgccgct atgtctcggg ttatctttat
     6361 cacaagggct cgcgcgaccg ttcttccgcc aacgccaccc atgcctgggt ggaagcctat
     6421 ctgccgtcct tgggctgggt gggcttcgat cccaccaaca acatcatggc gggcgagcgc
     6481 catgtccgcg ccgcggtggg ccgcgactat gccgatgtgc cgcccacccg cggcacctac
     6541 aagggcggcg ccgacagcga actgtcgatt gcggtgtcgc tggagccgac ccaggcgccg
     6601 gtgcgccacg aggatttcct gaaagtggcc cgcccgatgg cctcgcccac ccccaccgcc
     6661 tcgatgcccg aacggcttta tcaccagcag caacaacagc agcagcagga atagcgggcg
     6721 ccaacgccct gctcacgccg gttcgcgcct atgctatgaa ggcgcatgac caagcggaaa
     6781 aaacgcgaat tgggcggcag gctggaagtc gatggctatc ccctgcgctg gaccttgaaa
     6841 agcgagcaga tctgggaccc caagggcgac catgtcggcc tgcgcctgtc ggtggagcgc
     6901 gaagacgaaa cccgccgtga actggtgctg gaatatcctt ttcacgatgg cggccggacc
     6961 ctacgccccg acatcaaccc gcacacgctg gaaagcgaca ttcgccgcgc catggaggcc
     7021 ggctggaaac ccaaatcacg cggccggccc ttctttttcc agctctagcg cggcggcgat
     7081 gcttaacctt tcgtaaaccc gaagctgcaa agcgtcaggc ttttgttaac gcaagcaggt
     7141 ctatcgtcct tcccgaacca aagggaaggg cgccatgccg ctgaaattgt cgttaaagcc
     7201 gggcgagaaa ttcgtgctga atggcgcggt tctggccaat ggcgacaagc gcaccagcct
     7261 ggtgatccag aacaaggcct gcgtgctgcg cgaaaaggac atcatgcagc ccgaaggcgc
     7321 caacacgccg gcgcgccgca tctatctggc tatcatgatg atgtatctgg acggcgaagc
     7381 cagcgaagaa ccctataacg aattcgccct gcgcatgacc gaattcatgg gcgcgatccg
     7441 cacccccgcc atcctcagcg cctgcgtgga tatcagccgc gatgtggcgc aaggcgctta
     7501 ttacaaggcg ttgatcgcct gccggaagct ttttgacttg gaacaggagc gtttgagcta
     7561 tgagccttaa agcctataag gccgcgcagg tcgcgaccga agatccccgc ctgacggaat
     7621 accgcctgtt cggccaggtc accggcgcat tgctcaacgc caagcaagcg ggcgccgccg
     7681 gcgccccgct ggtcgaagcg gtggactgga accgccgcct gtggcgcacc ctggccgccg
     7741 actgcatgga tgaccgcaac accctcaccc aggatgtgcg cgccaagatc atctcgctgt
     7801 cgctgtgggt ggcgaaatat tcgcgcagcg tgacgcgcga aaaagcgccg ctggatcccc
     7861 tgatcgagat caaccgcacc atcatgcaag gcctgcaggc cagctaattc ggcctcggag
     7921 tttgaacttg aaaagccagc gcctagcgct ggctttttta ttgaccccca tccgtcgcag
     7981 ctcgaatcgg cttcgccgat atctcgctgc gacaccttcc cccttctcgt gcttcgcacg
     8041 aagggggaag gaagctgtcg gcaacggctt gtcgcgccgc gatgtgcggc gctcgagaca
     8101 ggcaagaaat gccggatgcg gcaagggatg cctaacggcg gacagccgtt aatgaaatta
     8161 acctagcaaa accaggaact tgtcaagtta acgccatggc acgggcgttg caaaacctcc
     8221 tgcgggtcat ttgcccaagg gcccgcagaa cgcgtggtcc accaccagaa aaacggagaa
     8281 tacccatgtc ctttagcgtc aacaccaaca ccggcgcgca ggtcgcgctg cagtatttga
     8341 atgccactca gggtcagctt gaccagaccc agagtgcgat caatagcggc ctcaaggtag
     8401 cgacggcgaa agacgatggc gcgatctacg ctattgccca gaaccagcgc ggcgcagtgg
     8461 ccggtttttc atccgtgatc aacagtctca ataacggttc gtcctccatt gacgtcgccc
     8521 tttcggcggg ccagtcgatt tcggacttgc tgatccagtt gaagaccaag gcgctttccg
     8581 cggctgaccc ctcgctcgat accgcgagcc gtcaggcgtt gaatgcgaac ttcacggcct
     8641 tgcgcgatca gatcaccacg atcgtcaaga atgccgtctt caacaacttc aacctggttg
     8701 acggttccac cgtgcaggtt caggccctgg cgtcctcgga cggcacccgc cgtatcacgg
     8761 tccaggctca gaacatgaag ctgtcgggtt cgatcgtgac gatcaagacc acgtccacga
     8821 tctcgaccca ggccaaggcc tcggccttga tcgcggtgat ccagacctcg ctgaccaacg
     8881 tcaactcggc tttggccaag ctgtcgtcgg gcgctgcgaa gttctcgatc caggcgacct
     8941 tcagccagaa actgtccgat accctgactg cgggcatcgg caacctcgtc gatgccaaca
     9001 tggcgcagga aagcgccatg ctgcagtcgc tgcaggtcaa gcagcagctg ggcgtgcagg
     9061 ctctgtcgat cgccaatcag gcgccgcaga ccatcctgtc gctgttcaag taaaaacctc
     9121 tttcgagggg gcttataaag aggcggtgct ttgcaccgcc tctttttctt ttaatgcgct
     9181 ccggctcgcg ccgacgcttg tgaggcggtg cgaaagcatc gccccttttt cttattgatg
     9241 gcgctccggc tcacgcctac attcggcggc gcttcgcgcc accttttatt atgacgctcc
     9301 ggctcacgcc tacgcgctcg gcggtgcttt gcactgcccc tttttctttt atcgcggttg
     9361 tgggtgcttc accgccacgc gcgttcatct ttgttaaaca tgaagctgtg ccggcgtgaa
     9421 ccattatttt ccgcgggttt ccgcgatttt tcgcaggccc cttttatgaa aagtggagtt
     9481 atttgcctat cctgcccggc aagagttgcc ggtggcggca atttttgccg ggcagggcgc
     9541 gccgcacggt aacgcctgcc ggaccctatt ttcctcaccg gcgcaaaatc gatggttgac
     9601 caggtcttac cgcgaaccgg cacggcgctt gccaagggct gtgcgggcaa aacgcccaaa
     9661 gagcattgca aaacgcgttg ctctgatacc agaacggaga gaccaatatg tcctttagcg
     9721 tcaacacaaa tagcggcgcc ctcgttgcgt tgcagtatct gtccgccacc cagggccagc
     9781 tgaatcagac tcagtcggcc atcaacagcg gcctgaaagt cgccaacgcc cgcgatgatg
     9841 gcgcgatcta cgccatcgcc cagaaccagc gcggccaggt tgccggttat tctgccgtca
     9901 tcaactcgat caacaacgcc acttcttcgg ttgacgtcgc cttgtcggcg ggccagtcga
     9961 tttcggacct gctgatccag ctgaagacca aggcgctcgc cgcggctgac tcctcgctcg
    10021 ataccgcgag ccgtcaggcg ctgaacgcca acttcaccgc cctgcgcgat caaatcacca
    10081 cgatcgtgag caatgcggtg ttcaacggct tcaatctggt gaacggttcg accggccaga
    10141 tcactgctct ggcctcggcc gacggcaccc gccgtatcac gaccgctgcc cagaacatga
    10201 agctgtcggg cagcatcgtg accatgaagt ccacggccac gatctcgacc caggcgaagg
    10261 cgtccactct ggtcgccacg atccagacct cgctgaccaa cgtcaactcg gctctggcca
    10321 agttgtcttc gggcgctgcg aagttctcga tccaggcgac cttcgcccag aagctgtccg
    10381 ataccctgac gacgggcatt ggcaacctgg tcgatgccaa catggcgcag gaaagcgcca
    10441 tgctgcagtc cttgcaggtc aagcaacagc tgggcgtgca ggctctgtcg atcgccaatc
    10501 aggcgccgca gaccattctc tcgctgttcc gctaagccac ggcatgggcg gtgtcccttt
    10561 tcagaggcac cgcctatcgc cagccgctgc cggacgaccg taagaatacg gcttccgccc
    10621 cggggcgtag ggaccagttc tttctggtgg gtaggtgaag agcgaagagc ccggggggcg
    10681 cttcgctctt caccgctttt atttggtcgc accgcgaggc acccactcgc gttcgcggtt
    10741 gctcttgcaa aagacggaca ccccgggggg cggtccgtct tttgtggttg ttcagccacc
    10801 cagcgccagg gcgatggctg aatccaggaa atcagggccg caaagccgcg ccgaaatttc
    10861 ggttacatgc ggcacgccct gatgcatcac gatctcgcac accacaggcg tgccctccag
    10921 gcccagcgcc gacgcggcgc gggtcgcgat ctcgcggacg gcgccgtcag acgatcctgc
    10981 cacagggcat gttccgccct gcatcaatag cgtgacgc
//
LOCUS       DATMDK010000393         2701 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1096215,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000393 DATMDK010000000
VERSION     DATMDK010000393.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2701)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2701)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2701
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1096215"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..239)
                     /locus_tag="VNN98_07585"
     CDS             complement(<1..239)
                     /locus_tag="VNN98_07585"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM61997.1"
                     /translation="MSEMTPAFAGMKNIGSGVGVHAALRPYNIVSVLARKDQAQAVMD
                     KAGVTDAACQSGTNDVTALGIGPGRWLFLGSTLEQL"
     gene            complement(232..>2701)
                     /locus_tag="VNN98_07590"
     CDS             complement(232..>2701)
                     /locus_tag="VNN98_07590"
                     /inference="COORDINATES: protein motif:HMM:NF013720.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="glycine cleavage T C-terminal barrel
                     domain-containing protein"
                     /protein_id="HWM61998.1"
                     /translation="DPDSYEKAHAFCDLLVAGSGPAGLMASLAAARSGARVILCDEDF
                     VFGGRLLSENYIIDGQRGADWAGEVVEELRGLANVTLLSRTALLSVYDGNSYAALERV
                     SDHLAAPVLHQPRQRLWKIVAKRTVIATGSHERIIAFGGNDRPGVMQASAIRTYVNRY
                     AAVPGDNVGIFTATGDGWRTAIDLIGAGVKIAAVVDLRPYVNARLIAAAEAVGVRVFL
                     NAEVVGVLGGARLRGIEISTDGRNALTVNCDVLGVSGGFNPALGLSSHLGSRPVWSDK
                     AAAFVPDQLPPGLDVAGAARGVFSLAACLADGVRAAGKSIAVPSASEDSDELAPLWRT
                     RRRRGKAFVDMQNDVTDKDIELAVQEGFNNSEHLKRYTTLGMATDQGKTGALVGQAIM
                     AALTGRSPSTLSPPIARPPSVPVAIGAYAGLHRGADFRPTRLTAGHAWAQERGAVFTE
                     TGQWLRAQWFAQPSEKDWLESVSREAAHVRRGVGVCDVSTLGKIDIQGPDAGAFLDRV
                     YINTFSTLAVGKARYGVMLREDGFVMDDGTTSRFAPDHYFMTTTTANAGKVMQHLEFC
                     HQALWPELDVQMISVTEQWSQYAVAGPRARDVMQKLVDRDISHEAFPFLAVADLTIAG
                     GTRARLLRISFSGELAYELAVPARCGDAAIRALMAAGAEFGIAPYGTEALGVLRIEKG
                     HAAGNELNGQTTARDLGLGKMMSSKKDYIGRVLAARPALVDPQRPALAGVKPVDRNKR
                     LRGGAHFFVPGMKVCPENVEGHMTSICFSPTLGHWIGLGLLKRGPQRIGEKLRAFDPM
                     HGEDFAVEVCSPVFVDPEGARLHV"
BASE COUNT          495 a          944 c          800 g          462 t
ORIGIN      
        1 agctgctcca gcgttgatcc cagaaacagc cagcggcccg gaccgatacc caaagcggtg
       61 acatcatttg tgccgctttg gcacgctgca tccgtgaccc ccgccttgtc catcaccgcc
      121 tgggcctgat ctttgcgcgc cagcacactg acgatattgt atgggcgcaa ggcggcatgc
      181 acgcccacac cgctgccgat gttcttcatg ccggcaaagg ccggcgtcat ctcagacatg
      241 cagccgcgcc ccttccggat ccacgaacac cggcgagcac acctctaccg cgaaatcctc
      301 gccgtgcatc ggatcgaagg cgcgcagctt ttcgccgatc cgttggggac cgcgcttcag
      361 caggcccagg ccgatccagt gacccagcgt cggcgagaaa cagatcgagg tcatatggcc
      421 ttcgacattt tccggacaga ctttcatgcc gggaacaaag aaatgcgccc cgccacgcag
      481 acgtttgttc ctgtccaccg gtttgacccc ggccagtgcc ggacgctgcg ggtccaccag
      541 cgccgggcgc gccgccagga cgcggccgat atagtccttt ttgctggaca tcatcttgcc
      601 caacccgagg tcgcgcgccg tggtctgacc attgagttcg ttgcccgcgg catggccctt
      661 ttcgatgcgc agcacaccca gcgcctcggt gccgtaaggt gcaatgccga attccgcccc
      721 ggccgccatc agcgcccgga ttgccgcatc gccgcagcgc gccggcaccg ccagttcata
      781 ggccagctcg ccggagaaag atatccgcag cagccgcgcc cgcgtgccgc ccgcgatggt
      841 gagatcggcc acagccagaa acggaaatgc ttcatgggaa atatcccggt ccaccagttt
      901 ttgcattacg tcacgggccc gcggccccgc cacggcatat tgcgaccatt gctcggtcac
      961 cgatatcatc tgcacgtcca gctccggcca cagcgcctga tgacagaatt ccagatgctg
     1021 catcaccttg ccggcattgg ccgtggttgt tgtcatgaaa taatgatcgg gagcgaagcg
     1081 cgaagtggtg ccatcgtcca tcacaaaacc gtcctcgcgc agcatcacgc catagcgcgc
     1141 cttgccgacc gcaagtgtcg aaaaggtgtt gatatagacc cggtccagga acgccccggc
     1201 atcggggccc tggatgtcga tcttgcccag ggtcgagaca tcgcagaccc caacaccgcg
     1261 ccgcacatgc gccgcttcgc ggctgacgct ttccagccag tctttttcgc tcggctgcgc
     1321 gaaccattgg gcgcgcagcc actggccggt ttcggtgaag acggcgcccc gctcctgcgc
     1381 ccaagcgtgc cctgcggtca ggcgggtggg acggaagtcg gcgccgcgat gcaggccggc
     1441 ataggcgccg atggcgaccg gcacactggg cggccgcgcg atgggcggcg acagggttga
     1501 agggctgcgc cccgtcagcg ccgccatgat cgcctgaccg accagcgccc cggtcttgcc
     1561 ctgatcggtc gccatcccca aggtggtata acgcttgaga tgttcgctgt tgttgaagcc
     1621 ttcctgcacc gccagttcga tatccttgtc cgtgacatcg ttctgcatat ccacgaaagc
     1681 cttgccgcgg cggcggcggg tgcgccacag cggcgccaac tcgtcgctgt cctcgctggc
     1741 gctgggcacg gcgatgcttt tgccggcggc gcgcacgccg tcggccaaac aggcggccag
     1801 ggagaacacg ccgcgcgccg cgccggcaac gtccagtccc ggcggcaact ggtccggcac
     1861 aaaagcagcc gccttgtccg accataccgg ccgcgatccc agatgcgagg acagacccaa
     1921 agccggattg aagccgccgg acacgcccag cacatcgcaa ttgacggtca gggcattgcg
     1981 cccgtcggtg gaaatctcga tgccgcgcag ccgcgcgccg ccaagcaccc ccaccacttc
     2041 ggcgttgaga aaaacccgca cgcccaccgc ttccgccgct gcgatcaagc gcgcattgac
     2101 gtaagggcgc aggtccacca ctgccgcaat cttcacgccg gcgccgatca ggtcgatggc
     2161 agtccgccag ccatcacctg tcgccgtgaa gatgccgaca ttgtctcccg gcaccgcggc
     2221 gtagcggttt acgtaggtgc ggattgcgga tgcctgcatc accccaggtc tgtcgttgcc
     2281 gccgaacgca attatgcgtt catgactgcc ggtggcgatc accgtccgct tggcgacgat
     2341 cttccacaag cgctggcgag gctggtgaag cacgggcgca gcgagatggt cgcttacccg
     2401 ttccagcgcc gcatagctgt ttccatcata gacgctcagc agcgcggtgc gggacagtaa
     2461 tgtgacattg gcgagaccgc gtaattcctc caccacttca ccggcccagt cggcgccgcg
     2521 ctgtccatca attatatagt tttcagacaa tagccggccg ccgaacacaa aatcctcgtc
     2581 gcacaggatc acccgtgcgc cgcttcgggc ggcggcaaga ctggccatca agcccgcggg
     2641 cccggaaccc gctaccagca gatcgcagaa tgcgtgcgcc ttctcatagc tgtcggggtc
     2701 a
//
LOCUS       DATMDK010000394         3912 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1800114,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000394 DATMDK010000000
VERSION     DATMDK010000394.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3912)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3912)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3912
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1800114"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..273
                     /locus_tag="VNN98_07595"
     CDS             <1..273
                     /locus_tag="VNN98_07595"
                     /inference="COORDINATES: protein motif:HMM:NF012698.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HWM61999.1"
                     /translation="YTFHPSAKLLQVGGRKVRLTEKETNILKFLHASAGTVPRDILLH
                     EVWGYGPAVATHTLETHIYRLRKKIEQDPAKAQILLTEGGGYRLSA"
     gene            419..2449
                     /locus_tag="VNN98_07600"
     CDS             419..2449
                     /locus_tag="VNN98_07600"
                     /inference="COORDINATES: protein motif:HMM:TIGR02074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008658 - penicillin binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PBP1A family penicillin-binding protein"
                     /protein_id="HWM62000.1"
                     /translation="MGKRPGKPASNGPQKRPPGGPSRAPQGGGASRVPHADSAPAPRR
                     KRRATWPYVLVMLGAWGVIFGGLFFSHFLSSLPDVRHLMISGPSQDVTILDDRGRLIA
                     RRGLTQGAMVRAEDLPDYVSNAFIAIEDRRFRSHMGIDPIGLSRAAVQNMMSGHVVQG
                     GSTLTQQLAKNLFLSPSRTFDRKLQEAMLALYLESRYSKNQILTLYLNRVYFGAGVYG
                     IEAASEKFFGKHASELGLTEAAMIAGSVKAPARYNPLSDIDAGLQRAQLVLRAMQDAG
                     FIDDASRAMAQATRPRIVRTNGTPGSGWFADWIMAHLNDYVGATTEPITVETSFDLET
                     QALAEHAVANGLDTEGGKFNASQAALVAMTPDGAVRAMVGGRNYGGSTFNRATDAVRQ
                     PGSAFKPFVYLTALEHGHTPDDIVNDGPVDIHGWKPTDFDGHFKGQMPLIEAFAESSN
                     SVAAQLTAEVGAKDVARTARRLGIASPLMEVSSLALGTSGVTALELTGAYASFANGGN
                     GVQPFGVLKIHTRSGRVLYARRASGLGAVMSAHDNMQMTRLMTEVTATGTGKAARLDD
                     RPTAGKTGTTQDFHDAWFVGFTADLVCGVWLGNDNNAPMGKATGGTLPARIFHGFMTD
                     AEQGLPVRPLIGATLVASAQQLSDQMTPAAQPEDKSRPDTFQKILNGLFGGT"
     gene            complement(2702..3391)
                     /locus_tag="VNN98_07605"
     CDS             complement(2702..3391)
                     /locus_tag="VNN98_07605"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013980.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008237 - metallopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SprT family zinc-dependent metalloprotease"
                     /protein_id="HWM62001.1"
                     /translation="MKIDGRMLEVRVHLNPRARRMIVKVNPATGEVSVTAPSRRGLAH
                     ALDFARGEKAWIAGQLAKAPGPVALAAGAIVPFKGESHEIRAADRGPAPVWRDEGVIW
                     VRGRAAHAPRRVLDFLKNEARKTFEARVLEHASALGVKPSRITVRDTASRWGSCSSGR
                     SLSFSWRLILAPDFVLDYVVAHEVAHLREMNHSPRFWAHVKSLVPDLDAPQRWLKVNG
                     RELQRYAAGPA"
     gene            3426..>3912
                     /locus_tag="VNN98_07610"
     CDS             3426..>3912
                     /locus_tag="VNN98_07610"
                     /inference="COORDINATES: protein motif:HMM:NF014639.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="disulfide bond formation protein B"
                     /protein_id="HWM62002.1"
                     /translation="MNKVLNNKSGLPKLRRSAIFVQRIASYLKDISPVMIRDEQIARI
                     VGAGAMALILGALGFQYIAHLAPCEMCHWQRWPHIAAAVIGLIGVTLWKKDARTLAVA
                     AIILVAMSGLIGAYQWGMQAGLLPGPGACTVAHAYVMGSNAPPPEVSCNVVTWSLFGL
                     SL"
BASE COUNT          709 a         1273 c         1215 g          715 t
ORIGIN      
        1 tacaccttcc atccctccgc caagctgttg caggtgggcg ggcgcaaggt gcggctgacc
       61 gagaaggaaa ccaacatcct caagttcctg cacgccagcg cgggaactgt gccgcgcgat
      121 atcctgctgc acgaagtgtg gggctatgga cccgcggtgg ccacccatac cctggaaacc
      181 cacatctacc gcctgcgcaa gaagatcgag caagaccccg ccaaagcgca gattttgctg
      241 accgaaggtg gcggataccg gctttccgcc tgactttttt tgggtcgcgc gtcgcatgac
      301 gctggcgcta acgaccctgc gcggctgctc cgcagccgct ccgggttgcc ggtcgctccg
      361 gtagcatctc agtgaccttg tttaacggcc gttaaccttc gcggcctaga acagcggcat
      421 gggaaaaagg cccggcaaac ccgcatccaa cggcccgcag aagcgcccgc cgggcggccc
      481 gtcgcgtgcc ccgcaaggcg gcggcgcatc gcgcgtgccg catgccgact ccgcccccgc
      541 tccccggcgc aagcgccgcg ccacttggcc ctatgtcctg gtgatgctgg gcgcctgggg
      601 cgtgatcttc ggcggcctgt tcttttcgca tttcctgtcc agcctgcccg atgtccgcca
      661 tctgatgatc agcggcccgt cacaggacgt caccatcctg gatgatcgcg gccgcctgat
      721 tgcgcggcgc ggcctgaccc agggcgccat ggtgcgggcc gaagatttgc ccgactatgt
      781 gtccaacgcc tttatcgcca tcgaggatcg ccgcttccgc tcgcatatgg gcatcgatcc
      841 catcggcctt tcgcgcgcgg ccgtgcagaa catgatgagc gggcacgttg tgcaaggcgg
      901 ctcgaccttg acccagcagt tggccaagaa tctgttcctc agccccagcc gcaccttcga
      961 ccgcaagctt caggaagcca tgctggccct gtatctggag tcgcgctatt ccaagaatca
     1021 gatcctgacc ttgtatctca accgcgtcta tttcggcgcg ggggtttacg gcatcgaagc
     1081 ggcgtcagag aaattcttcg gcaaacatgc cagcgagttg ggcctgaccg aggcggcgat
     1141 gatcgcgggc agtgtcaagg cgccggcgcg ctacaatcct ttgtccgaca tcgacgccgg
     1201 tctgcagcgc gcccagctgg tgttgcgtgc catgcaggat gccggcttca tcgacgatgc
     1261 cagccgcgcc atggcgcagg cgacgcggcc gcgcatcgtg cgcaccaacg gcacgccggg
     1321 ttcgggctgg ttcgccgatt ggatcatggc ccatctgaat gactatgtcg gcgccaccac
     1381 cgaaccgatc accgtggaaa ccagcttcga tctggagacg caggccctgg ctgaacacgc
     1441 cgtggcgaac ggcctggaca ccgaaggcgg gaaattcaac gccagccagg cggcactggt
     1501 ggcgatgacg ccggacggcg cggtgcgcgc catggtggga gggcgcaact atggcggctc
     1561 aactttcaac cgcgccaccg acgcggtgcg ccagccgggc agcgccttca agccctttgt
     1621 ctatctcacc gccttggaac acggccacac gcctgacgac atcgtcaatg acggtccggt
     1681 ggacattcac ggctggaagc ctaccgattt cgacggccat ttcaaaggcc agatgccgct
     1741 gatcgaagcc ttcgccgaat cgtccaattc cgtcgccgct cagctcaccg ccgaagtcgg
     1801 cgccaaggat gtcgcgcgca ccgcaaggcg gctgggcatc gcctcgccgc tgatggaagt
     1861 ttcctccctg gcgctaggca cctccggcgt gacggcgctg gaattgaccg gcgcctatgc
     1921 gtcattcgcc aatggcggca acggcgtgca gcctttcggt gtgctgaaaa tccacacccg
     1981 ctccggcagg gttctgtatg cccgcagggc ctcgggcctg ggcgcagtga tgagcgcgca
     2041 tgacaatatg cagatgacgc gcctgatgac cgaagtgacc gccaccggca ccggcaaggc
     2101 ggcgcggctg gatgaccgcc ccaccgcggg caagaccggc accacccagg atttccatga
     2161 cgcctggttt gtcggcttca ccgccgatct ggtgtgcggc gtgtggctgg gcaatgacaa
     2221 taacgcgccg atggggaagg ccaccggcgg caccttgccg gcgcgcattt tccacggctt
     2281 catgaccgat gccgagcaag gcctgccggt gcggccgctg atcggcgcca ccctggtcgc
     2341 atctgcgcag cagctatcgg atcagatgac gccggcggcg cagccggaag acaagtccag
     2401 gcccgacacg ttccagaaaa ttctgaacgg gttattcggc gggacttaaa acgtgttgtg
     2461 gccggcctcg ccttccttcc ctctcccctt gagggagagg aagaaaaatc attgggttag
     2521 cggagcgcaa cgacgctcaa cccattgatt tttcaggtga ggggtgagtt gggcgcaaac
     2581 gcacccctca cctagcaaaa tctaagtact tggcttcgct tgcgcttcgc caagtgcaag
     2641 attttgcgtc ctctccctca aggggagagg gaaactgcga gcaaccttga taacagcgac
     2701 cctaagctgg ccctgcagca taacgctgca attcgcgccc atttaccttc agccagcgct
     2761 gcggcgcatc caggtcaggc accaggcttt tcacatgcgc ccagaagcgc gggctgtgat
     2821 tcatctcgcg cagatgcgcc acttcatgcg ccaccacata atccagcaca aaatccggcg
     2881 ccagaatcag ccgccaggaa aaggacagcg agcggccgga cgaacaggag ccccagcggc
     2941 tggcggtatc acgcactgtg atgcgcgaag gcttgacccc cagcgcggag gcatgttcca
     3001 gcacccgggc ctcgaaagtc ttgcgggctt cgtttttcag gaaatccagc acccggcgcg
     3061 gcgcatgtgc cgcacggccg cgtacccaga tcacgccttc atcccgccac accggcgcgg
     3121 ggccccgatc ggcggcgcga atttcatgac tttcgccctt gaagggcacg attgcgcctg
     3181 ctgccagcgc caccggcccc ggcgctttcg ccagttggcc ggcgatccag gctttttcgc
     3241 cgcgcgcgaa atccagcgca tgcgccaggc cgcgccgcga cggcgcggtg acgctgactt
     3301 cgccggtggc gggattgacc ttgacgatca tgcgccgggc gcggggattg agatgcacgc
     3361 gcacctccag catccggcca tcgatcttca acagctcgtg acgggcgggg gacggcggct
     3421 tttttttgaa caaggtttta aacaacaaga gcggtttgcc taagctgcgc agatcggcga
     3481 tatttgtaca gcggattgca tcgtacctga aagatatttc tcccgtcatg attcgtgatg
     3541 aacagattgc aaggatagtg ggcgccggcg cgatggcgct gattctcggc gcgctgggct
     3601 ttcagtatat cgcgcatctg gcgccttgcg agatgtgcca ttggcagcgc tggccgcata
     3661 tcgccgcggc ggtaatcgga cttattggtg tcacattgtg gaagaaagat gcgcgcacgc
     3721 ttgcggttgc cgccatcata ctggtcgcga tgtccggcct gatcggcgct tatcaatggg
     3781 gcatgcaggc ggggctgctg cctgggcctg gcgcctgcac cgtggcgcat gcctatgtca
     3841 tggggagcaa tgcgccgccg cccgaggtca gttgcaatgt tgtgacctgg agcctgttcg
     3901 gcctgtcgct gg
//
LOCUS       DATMDK010000395         2137 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1802215,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000395 DATMDK010000000
VERSION     DATMDK010000395.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2137)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2137)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2137
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1802215"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1072)
                     /locus_tag="VNN98_07615"
     CDS             complement(<1..1072)
                     /locus_tag="VNN98_07615"
                     /inference="COORDINATES: protein motif:HMM:NF024785.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP phosphoribosyltransferase regulatory
                     subunit"
                     /protein_id="HWM62003.1"
                     /translation="MPAFPYYNAPAIDALNSQAVALLKLFASRGYVREEPAVLQPAEI
                     FLDRSGEEIRRRTFTLMDPSGRELCLRPDLTIPICRQAVLDNRSVPARIAYNGLVFRH
                     QPGEPHRPTQFFQAGVELLGLENRAAGETEILSLAVESLRVCGLADFSLRIGDLALFG
                     ALVDALALPAQWRSRLKRHFWRAGYVESLLYWLGHGDGAAKLPGTRAEIEALLDARGD
                     APQAGRTREEIILRALDRAAEAANLRLDAKVADAIARLLDISGPAAEALANIRALLKT
                     AGINLDPQLAAMEARLATLKALGVDPARVQFTAHFGRNMEYYTGFVFELWARDKEGPV
                     QVAGGGRYDTMMEMLGAKSAVSA"
     gene            complement(1072..>2137)
                     /locus_tag="VNN98_07620"
     CDS             complement(1072..>2137)
                     /locus_tag="VNN98_07620"
                     /inference="COORDINATES: protein motif:HMM:NF024785.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ATP phosphoribosyltransferase regulatory
                     subunit"
                     /protein_id="HWM62004.1"
                     /translation="GSASPSADAELLMMLSDTLEALGLKRGDYIVKLNNRKLLDGVLE
                     ASGVALEDRARRGIVLRAIDKIDRLGVEGVSALLGEGRKDESGDFTKGAGLSPDQAHR
                     ILAFVAPDAADEEAHLRQIGTLVGSSAVGAAGLNELEQIVRLLSACGYGPDRVMFDTG
                     VVRGLDYYTGAVFEAQLTFPIQNEDGEEVVFGSVAGGGRYDDLVARFTGQQVPATGIS
                     IGVSRLMSALASRGLMAASGSPLIVVTVFDKAEAAASFAIVQELRAAGLRAEAYVGNG
                     KMGDQFKYADKRGAAIAVIEGGDERVRGEVTLKDLALGTELAKSVESRAEWVANREAQ
                     KSVKRGALVAEIKAMLKGRG"
BASE COUNT          365 a          757 c          667 g          348 t
ORIGIN      
        1 tggcgctgac cgcacttttg gcgcccagca tttccatcat cgtatcgtac cgcccgccgc
       61 ccgcgacctg caccggacct tccttgtcgc gcgcccacag ctcgaacacg aagccggtgt
      121 aatattccat gttgcggccg aaatgggcgg tgaattgcac gcgcgcgggg tcgacgccca
      181 gcgctttcag cgtggccagc cgtgcctcca tcgccgcaag ctggggatcg agattgatgc
      241 cggcggtctt cagcaaggcg cggatgttgg ccagcgcctc cgccgccgga ccggaaatgt
      301 ccagcagccg ggcgatggcg tcggccacct tggcgtccag ccgcaggttc gcggcctcgg
      361 cggcgcggtc cagggcgcgc aggatgatct cttcgcgggt gcggcctgct tgcggcgcgt
      421 cgccgcgcgc gtccagcagc gcctcgatct cggcgcgggt gccgggcaat ttcgcggcgc
      481 catcgccatg gcccagccag tagagcaggc tttcaacata gccagcgcgc cagaaatggc
      541 gcttgagacg cgagcgccat tgcgccggca gcgccagcgc gtccaccagg gcgccgaaca
      601 gcgccagatc gccgatgcgc agcgaaaaat ccgcaagccc acaaacacgc agggactcga
      661 cagccagaga caggatttcg gtttcgcccg cggcgcggtt ttccagtccc aatagctcca
      721 cgcccgcctg gaagaactgg gtgggacgat gcggttcgcc cggctggtgg cggaagacca
      781 gcccgttata ggcgatgcgc gccggaacac tgcgattgtc cagcaccgcc tggcggcaga
      841 tcggaatggt gagatcgggg cgcaggcaca attcgcggcc cgacggatcc atcagggtga
      901 aggtgcggcg gcgaatttcc tcacccgaac ggtccaggaa tatctcggcc ggctgcagca
      961 cagccggttc ctcgcgcaca tagccgcgcg aagcgaacag cttcaaaagc gccaccgcct
     1021 ggctgttaag cgcatcgatg gcgggcgcat tataataggg aaaggcgggc attagcccct
     1081 gcccttcagc atcgccttta tctcggccac cagtgcgccg cgcttgacgc tcttttgcgc
     1141 ctcgcggttg gccacccatt cggcccggct ttccaccgac ttggccagtt ctgtgcccag
     1201 cgccagatct ttcaaggtga cctcgccgcg cacccgttcg tcaccgcctt cgatcaccgc
     1261 gatggcggcg ccgcgcttgt cggcatattt gaactggtcg cccatcttgc cattgccgac
     1321 ataggcctcg gcgcgcaggc cggccgcgcg caattcctgc acaatggcga aagacgccgc
     1381 ggcctcggct ttgtcgaaca cggtgaccac gatcagcggc gacccggatg cggccatgag
     1441 cccgcgcgag gccagcgccg acatcaggcg cgacacgccg atggagatgc cggtggccgg
     1501 cacttgctgg ccggtgaagc gcgccaccag gtcgtcataa cgcccgccgc ccgccaccga
     1561 gccgaacacc acctcttcgc catcctcgtt ctgaatcgga aaagtcagct gcgcctcgaa
     1621 tactgcgcca gtgtaatagt cgagcccgcg gaccacgccg gtatcgaaca tcacccgatc
     1681 ggggccgtag ccgcaggcag aaagcaaccg cacgatctgt tccagttcgt tcagtcccgc
     1741 cgcgccgaca gcgctgctgc cgaccagggt gccgatctgg cgcagatggg cctcttcatc
     1801 cgccgcatcg ggcgccacga aggccagaat gcgatgggcc tgatcggggc tcagccccgc
     1861 gcccttggta aagtcgccgg attcgtcctt gcggccttcg cccagcagcg ccgacacgcc
     1921 ctccacaccc agccggtcga tcttgtcgat cgccctgagc acaataccgc gccgggcgcg
     1981 gtcttccagc gccacgccgc tggcttccag cacgccgtcc agcagcttgc ggttgttcag
     2041 cttgacgatg tagtcgccgc gcttcaggcc cagcgcctcc aaagtgtcgg acagcatcat
     2101 caacagttcg gcgtcggcgc tgggcgacgc gctgccc
//
LOCUS       DATMDK010000396         2862 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2033173,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000396 DATMDK010000000
VERSION     DATMDK010000396.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2862)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2862)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2862
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2033173"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            228..659
                     /locus_tag="VNN98_07625"
     CDS             228..659
                     /locus_tag="VNN98_07625"
                     /inference="COORDINATES: protein motif:HMM:NF019017.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1489 domain-containing protein"
                     /protein_id="HWM62005.1"
                     /translation="MPVHIIKLCVGCDSLTDLAQWQKKRLKEKRAKGQKPELIHVTRM
                     TPKRADEVLGGGSLYWVIKGQIAARQKLLAFRAVKKNGVPHCGLVYDKELVPVVARPR
                     RAFQGWRYLETKDAPPDLAKTKGAKNLPEALQRELAALGLL"
     gene            complement(676..1506)
                     /gene="panC"
                     /locus_tag="VNN98_07630"
     CDS             complement(676..1506)
                     /gene="panC"
                     /locus_tag="VNN98_07630"
                     /EC_number="6.3.2.1"
                     /inference="COORDINATES: protein motif:HMM:TIGR00018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004592 - pantoate-beta-alanine ligase
                     activity [Evidence IEA];
                     GO_process: GO:0015940 - pantothenate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pantoate--beta-alanine ligase"
                     /protein_id="HWM62006.1"
                     /translation="MTKIVTTVAELRAALAPLKPGRIGMVPTMGALHAGHVSLVTEAR
                     KQAGAVLVSIFVNPAQFAPNEDFDAYPRTLDADLAKLGDAVDIVFTPTAREIYPDGHA
                     TTISVGGPSAGLETDFRPHFFSGVATIVAKLLIAAMPDIALFGEKDYQQLLVVKRLVH
                     DLALPVQIIGAPTVREADGLALSSRNAYLSDSERKVAARLNAILKDAIIKARTTGDLR
                     AAEAQAIEALWKAGFDHVDYVAIRDAENLDHIAVLDHPARILAAVRIGKTRLIDNMAI
                     "
     gene            complement(1506..>2862)
                     /locus_tag="VNN98_07635"
     CDS             complement(1506..>2862)
                     /locus_tag="VNN98_07635"
                     /inference="COORDINATES: protein motif:HMM:NF012970.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="D-alanyl-D-alanine carboxypeptidase"
                     /protein_id="HWM62007.1"
                     /translation="MQTPLPVSYHASIQKPTKLGLRPGETISVDTAIRAIVIRSANDV
                     AVVIAEALGGTESHFAELMTAKARQLGMKETNYHNASGLPDPLQISTASDLAVLGRHL
                     AYDYPQYFPYFGLSGFNYKGAWYPTHDNLIGRYDGADGIKTGYTGASGFNLVSSVTRG
                     TTHIIAVVMGGRTAMRRDLEMVRLLDQTFAQVSANPNLVARANVPWQQVAQNAPAPAI
                     AGFSLPQVATNQFAALSPVPQTVQNEDEDAAEAVRAPDENFSLIHAEGVAPAAGKPAA
                     PAPQSAAPQAAAPQAPPQPAVPPAVAKAAGPAPAVRPSPRPDSFLAVAQAQLIKTQLV
                     KTAVNTVNAPKPQMRPSLREDAGEGDAEVTPSPGHNWTIQIGAYADKALADAQLKTYY
                     GKAQDVLARASRIIAPITSPQGHTLYRARFGLYAEQEAREVCNRLTQRGQTCFAAVQT
                     R"
BASE COUNT          494 a          859 c          975 g          534 t
ORIGIN      
        1 ctcattctcg gcgcggcggg cggccgcttc cttggcgcgg tccatgaacg ggttttgcgc
       61 ataggccggg gcgcttgcca tggccgccaa cagcacaaga gatgtcatgc cgaatttcat
      121 tcctgaggct cccctgatta ttttctggtt ggcaaaatgc tgccatgaga tcgggcattt
      181 cgcaatctgc aattgtattt ctgttgcagt gcggttaagg cgtcctcatg cccgttcata
      241 tcatcaagct ttgcgtcggc tgcgatagcc tgaccgacct cgcccaatgg caaaaaaagc
      301 ggctgaagga aaaacgggca aaaggccaga agccggaatt gattcacgtt acacggatga
      361 cacccaagcg cgccgatgag gtgcttggcg gcgggtcgct ctattgggtg atcaaaggcc
      421 agattgctgc aaggcaaaaa ctgctggcct tccgcgcggt caagaagaac ggcgtccccc
      481 attgcggcct ggtctatgac aaggagctgg tgccggtggt ggcgcggccg cggcgcgcct
      541 ttcagggttg gcgctatctg gaaaccaagg acgcgccgcc agacctggcc aagaccaagg
      601 gggccaagaa cctgcccgaa gcgctgcagc gcgaactcgc cgcgctggga ctgctgtaga
      661 ttcgcagtcg aaagactaga tcgccatatt gtcgatcagc cgcgtcttgc cgatccggac
      721 cgccgccaga atgcgggcgg ggtggtccag caccgcgata tggtccaggt tttcggcatc
      781 gcgaatggcg acatagtcca catgatcgaa gccggctttc catagcgctt cgatggcctg
      841 ggcttccgcc gcgcgcagat cgccggtggt acgcgccttg atgatggcgt ctttcagtat
      901 cgcattcagc cgggccgcaa ctttgcgctc gctgtcgctc agataggcat tgcgcgacga
      961 cagcgccagc ccgtcggcct cgcgcacggt gggggcgccg atgatctgga ccggcagggc
     1021 caggtcgtgc accagccgtt tcaccaccag cagctgttga taatcctttt ctccgaacag
     1081 cgcgatgtcg ggcatcgccg cgatcagcag cttggccacg atggtggcga cgccgctgaa
     1141 aaaatgcgga cggaagtcgg tttccaatcc cgcgctgggg ccgcccacgg aaatcgtggt
     1201 ggcatggcca tcgggataga tttcccgcgc cgtgggcgtg aagacaatgt cgacggcatc
     1261 gcccagtttg gccaggtcgg catccagggt gcggggatag gcgtcgaaat cctcgttcgg
     1321 tgcgaactgg gcgggattga cgaagatgct gaccaggacg gcgccggcct gtttcctggc
     1381 ttcggtcacc agcgagacat ggcccgcatg cagcgcgccc atggtgggca ccatgccgat
     1441 gcgtccgggc ttgagaggag ccagcgccgc gcgcagctcc gccaccgtcg tgacgatttt
     1501 ggtcattacc gtgtttgcac ggccgcgaag caggtctggc cgcgctgggt cagccggttg
     1561 cagacctcgc gcgcttcctg ttcggcgtac agcccgaagc gggcgcgata aagggtatgg
     1621 ccctggggcg aagtgatcgg cgcgatgatc cgggaagccc gcgccagaac gtcctgcgcc
     1681 ttgccgtaat aagttttgag ctgcgcatcg gccagcgcct tgtcggcata ggcgccgatc
     1741 tggatggtcc aattgtgccc cggcgagggc gtgacttcgg catcgccttc gcctgcatcc
     1801 tcacgcaggc tgggacgcat ctgcggcttg ggggcattca ccgtgttgac ggcggtcttg
     1861 accagctggg tcttgatcaa ttgggcttgg gcgactgcca gaaagctgtc aggacggggg
     1921 ctgggacgca cggcgggcgc tgggcccgcg gccttggcca cggcaggcgg cacggcgggc
     1981 tgcggcggcg cttggggcgc cgcagcctga ggcgcggccg actggggcgc gggcgcggcg
     2041 ggcttgcccg cagcaggggc gacgccttcc gcatgaatca gggagaagtt ttcgtcgggc
     2101 gcgcgcaccg cttcggcggc gtcttcgtcc tcgttctgca cggtctgggg caccggcgac
     2161 agcgcggcga actggttggt ggcgacctgc ggcagactga aaccggcgat ggccggcgcc
     2221 ggagcgttct gcgccacctg ctgccacggc acattggcgc gcgccaccag attgggattg
     2281 gccgatacct gggcgaaagt ctgatccaac agccgcacca tctccagatc gcggcgcatg
     2341 gcggtgcgtc cgcccatcac cacggcgatg atgtgggtgg tgccgcgcgt caccgagctc
     2401 accagattga atccgctggc gccggtatag ccggtcttga tgccgtcggc gccgtcatag
     2461 cggccgatca gattgtcgtg ggtgggatac caggcacctt tgtagttgaa gcccgacagg
     2521 ccgaaataag ggaaatattg cggatagtca taggccaggt gacggcccag gaccgccaag
     2581 tcgctggcgg tcgaaatctg caacggatcg ggcaggcccg aagcattgtg gtagttggtt
     2641 tccttcatcc ccagctggcg ggccttggcc gtcatcagtt cggcgaagtg ggattcggtg
     2701 ccgcccaggg cttcggcaat caccaccgcc acatcgttgg cgctgcggat cacgatggcg
     2761 cgaatggcgg tgtccaccga aatggtctcg cccggacgca gccccaattt ggtcggcttc
     2821 tggatggagg cgtgatagct gaccggcagc ggcgtctgca tg
//
LOCUS       DATMDK010000397         2004 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2700949,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000397 DATMDK010000000
VERSION     DATMDK010000397.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2004)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2004)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2004
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2700949"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..379)
                     /locus_tag="VNN98_07640"
     CDS             complement(<1..379)
                     /locus_tag="VNN98_07640"
                     /inference="COORDINATES: protein motif:HMM:NF018513.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM62008.1"
                     /translation="MSQHDLYLLAIALIVILAVVVAIARFKVHPFPALVIGALVLGLW
                     AGASPDHVLKSFRTGFGETLANVGVLLALGAMFGELLASSGGAERVSSALLKIGGPRL
                     VPWTMGAVAMILGLPLFFEAGVVL"
     gene            complement(575..1027)
                     /gene="queF"
                     /locus_tag="VNN98_07645"
     CDS             complement(575..1027)
                     /gene="queF"
                     /locus_tag="VNN98_07645"
                     /EC_number="1.7.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020808490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0033739 - preQ1 synthase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="preQ(1) synthase"
                     /protein_id="HWM62009.1"
                     /translation="MVKKSIQLGRAVKAPASPQEAVLDTVPNPHPDSDYLVRFTAPEF
                     TTLCPITGQPDFAHLVIDYVPGKKLVESKSLKLFLGSFRNVGAFHEDCTVKIGKRVRA
                     VIKPEFIRIAGYWYPRGGMPIDVFWQSGKVPQGVWLPDTGVQSYRGRG"
     gene            complement(1032..1421)
                     /locus_tag="VNN98_07650"
     CDS             complement(1032..1421)
                     /locus_tag="VNN98_07650"
                     /EC_number="4.1.2.50"
                     /inference="COORDINATES: protein motif:HMM:NF013411.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0070497 -
                     6-carboxy-5,6,7,8-tetrahydropterin synthase activity
                     [Evidence IEA];
                     GO_process: GO:0008616 - queuosine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="6-carboxytetrahydropterin synthase"
                     /protein_id="HWM62010.1"
                     /translation="MTKRAPKADIPGMIELSQEFGFDAAHYLGNGAAENRRLHGHSFY
                     AEVTLRGEADPATGFLRDFGEVDAALKAIRETLDHRLLNDIEELGVPTLENLAKYIFV
                     RAKTALPEVVRVKLRRPSYGQTCTYEG"
     gene            1475..>2004
                     /gene="lepB"
                     /locus_tag="VNN98_07655"
     CDS             1475..>2004
                     /gene="lepB"
                     /locus_tag="VNN98_07655"
                     /EC_number="3.4.21.89"
                     /inference="COORDINATES: protein motif:HMM:NF021981.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006465 - signal peptide processing
                     [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase I"
                     /protein_id="HWM62011.1"
                     /translation="MIKHPLIRHLAGWLIEPLVAIILVTCATTAIAQPFCIPSGSMEP
                     TLQIGDALLGSKFAYGYSRYSLPRAVGPASDTRLFGKLPARGDVVIFRLPRDTGETLI
                     KRVIGLPGDRIQMVRGRLVINGRTVPLETAGIGKVEDSRGHWHEIGKFTETLPGGVKH
                     TIFKAGWDGVLDDTRV"
BASE COUNT          404 a          652 c          593 g          355 t
ORIGIN      
        1 tcagcaccac gcccgcctcg aaaaacagcg gcaggcccaa gatcatcgcc actgcgccca
       61 tagtccaggg caccagccgc ggaccgccga tcttcagcag cgccgatgac acccgctccg
      121 cgccgcccga actggccagc aattcgccga acatggcgcc cagcgccagc aacacaccga
      181 cattggccaa agtctcgcca aagccggtgc ggaaactttt cagcacatga tcgggcgacg
      241 cgcccgccca caggcccagc accagcgccc cgatcaccag cgcaggaaat ggatgcactt
      301 tgaaacgcgc aatggcgacc accaccgcca gaatgacgat gagcgcgatg gccagcagat
      361 acaaatcgtg ctgcgacatg aaagatcccc ccggatccga ctcagccggg cgttcccggt
      421 tcagaatcga aggttagcat actggttgta gaggcacagc cttacccgcg gccgcgataa
      481 gatcgtacgc cgggatctgg aagccgctta gcttttctta cgagcaaagc gagttagaaa
      541 ggcttgcgtc ccccggcttg tccgggggac ccattcatcc gcggccgcga taagactgca
      601 caccggtatc cggcagccat acaccttgag gaactttgcc gctctgccag aacacgtcaa
      661 tcggcatgcc gccgcgcgga taccaatagc cggcgatgcg gatgaattcg ggcttgatca
      721 cggcccggac gcgcttgccg atcttgacgg tgcagtcctc atgaaaggcg ccgacattgc
      781 ggaaactgcc caggaacagt ttcagcgatt tggattcgac cagctttttg cccggaacat
      841 agtcgatcac cagatgcgcg aagtccggct ggccggtgat cgggcacaga gtggtgaatt
      901 ccggcgcggt aaagcgcacc agataatcgc tgtcaggatg gggattgggt accgtgtcca
      961 acaccgcttc ctgcggcgat gcgggcgctt tgacggcgcg gcccaactga atgctctttt
     1021 tgaccatcgc tctagccctc gtatgtgcaa gtctggccat aagacggacg gcgcagtttc
     1081 acccgcacca cttcgggcag cgccgtcttg gcgcgcacaa agatgtattt ggccaggttc
     1141 tccaaggtgg gaacaccgag ttcttcgatg tcgttcagca gccggtgatc cagggtttcg
     1201 cggatcgcct tcagcgccgc atccacttcg ccgaaatcgc gcaggaagcc ggtcgccgga
     1261 tccgcctcgc cgcgcagcgt aacctcggca tagaaagagt ggccgtgcag gcggcgattt
     1321 tccgccgcgc cattgcccag ataatgggcc gcgtcaaagc cgaattcctg gctgagttct
     1381 atcatgccgg ggatatcggc ttttggagcc cttttggtca aggattaacg cgaaaagcta
     1441 ttgccaggct cagcccccgg gcgacaatgg cgccatgatc aagcatcccc ttatccgcca
     1501 cctggccggc tggctgatcg aacccctggt ggcgatcatc ctggtgacct gcgccaccac
     1561 cgccatcgcc cagccgttct gcattccttc gggctccatg gagccgaccc tgcagatcgg
     1621 tgacgccctg ctgggcagca agttcgccta tggctatagc cgctattccc tgccccgcgc
     1681 cgtgggaccc gcctcggaca cgcggctgtt cggcaaactg ccggcgcgcg gcgatgtggt
     1741 gatcttccgc ctgccgcgcg acaccggtga gaccctaatc aagcgcgtca tcgggcttcc
     1801 tggcgaccgt atccagatgg tccggggccg gctggtgatc aatggccgca ccgtgccctt
     1861 ggagacagcc ggaatcggga aagttgagga tagccgcggc cactggcacg agatcggcaa
     1921 attcaccgag accctgccgg gcggggtcaa acacaccatc ttcaaggcgg gctgggacgg
     1981 ggtgctggac gatacgcggg tctt
//
LOCUS       DATMDK010000398         2244 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_3169976,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000398 DATMDK010000000
VERSION     DATMDK010000398.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2244)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2244)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2244
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3169976"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..439)
                     /locus_tag="VNN98_07660"
     CDS             complement(<1..439)
                     /locus_tag="VNN98_07660"
                     /inference="COORDINATES: protein motif:HMM:NF016873.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-formylglutamate amidohydrolase"
                     /protein_id="HWM62012.1"
                     /translation="MTENAFEAIPGSQNSSLLLLLCDHASNGLPPGLGTLGLEPQLFA
                     THIAYDIGAAAVTRTLAAAYGAPALLGRWSRLLIDLNRGADDPTLVMKLSDGSIIPGN
                     RDADAAEVARRVAAYHAPYHAVIAAELDRIGSGAVIVSLHSFTP"
     gene            505..912
                     /locus_tag="VNN98_07665"
     CDS             505..912
                     /locus_tag="VNN98_07665"
                     /inference="COORDINATES: protein motif:HMM:NF018037.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1036 domain-containing protein"
                     /protein_id="HWM62013.1"
                     /translation="MRRTPLLLALAFGPLCFGAGPALAAFNVCNKTGLAVRTALGRFD
                     GTNWSSEGWWTIQPRACAAILTGPLQGRYYYLYASDGGAGTWEGKTRFCVAPEKRFKS
                     VGRGDCVKRGFDRRGFFEVDTGKKPDWTQSLSN"
     gene            924..>2244
                     /gene="pyk"
                     /locus_tag="VNN98_07670"
     CDS             924..>2244
                     /gene="pyk"
                     /locus_tag="VNN98_07670"
                     /EC_number="2.7.1.40"
                     /inference="COORDINATES: protein motif:HMM:NF004491.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004743 - pyruvate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate kinase"
                     /protein_id="HWM62014.1"
                     /translation="MRRRRKTKILATLGPASNTPAMMRALFDAGVDVFRINMSHTSHE
                     MLKQMHGALRALSEEVGRPIGILCDLQGPKIRLGVLPGGSRMLVQDERIRLVLGESSD
                     KPEEIPIPHPEIFQAIKQKHALLIDDGKIRLRLLRKSDTFAEAVVEVGGEIKNRKGVN
                     MPDTLLPMSAMTPKDRADLDAALELGVDWIALSFVQRPEDVAELKKIVAGRAGVLAKI
                     EKPKALASLHGILELADALMVARGDLGVEMPLERVPGLQKQITRAARKAGKPVVVATQ
                     MLESMILSPMPTRAEVSDVATAVFDGADAVMLSAESASGSFPVEAVQTMDRIAMSVED
                     DELYHSIIESQRGTPEKTTPDAIMAAVHEVTQTIEARAIVCWTKSGITAMRATRERSQ
                     APIIAPTPSIETARRLCLVWGTHSVITEDIRDFDDMVKRASQIARQEG"
BASE COUNT          417 a          724 c          737 g          366 t
ORIGIN      
        1 gcggcgtgaa actgtgcagg gagacgatca ccgcgccgct gccgatgcgg tccagttcgg
       61 cggcgatcac ggcgtgatag ggcgcatgat aggccgcgac ccgccgcgcc acctcggccg
      121 cgtccgcatc gcggtttccc ggaatgatgc tgccatccga cagcttcatc accagggtgg
      181 gatcgtcggc gccccggttg agatcgatca gcagccgcga ccagcgcccc agcaaggccg
      241 gcgcgccata ggcggccgcc agggtgcgcg tcaccgccgc cgccccgatg tcataggcga
      301 tgtgggtggc aaacagctgg ggctccagcc ccagcgttcc caagccgggc ggcaggccat
      361 tggaggcgtg atcgcaaagc agcagcagca gcgagctgtt ttgggaccct gggatggcct
      421 caaaggcgtt ttccgtcatg cggttgccat ataggatcgg gaggcgttga cggccaagca
      481 ctttcacgcc aaaccgggtt cacaatgcgt cgcacgcccc tgctcctcgc tctggccttc
      541 ggcccactat gtttcggggc cggccccgcg cttgccgcct tcaatgtctg caacaagacc
      601 ggcctggcgg tgcgcaccgc cctgggccgc ttcgacggca ccaactggag cagcgagggc
      661 tggtggacca tccagccccg cgcctgcgcc gccatcctga ccggccctct gcagggccgg
      721 tactattatc tctatgccag cgacggcggt gccgggacct gggagggcaa gacccgtttc
      781 tgcgtcgcgc ccgagaaacg cttcaagtcg gtggggcgcg gcgactgcgt caagcgcggc
      841 ttcgatcgcc gcggcttctt tgaagtggat acgggcaaga agcctgactg gacacaatcg
      901 ctctccaatt aggacataat tttatgcgcc gccgccggaa aacaaaaatc ctcgccaccc
      961 tgggcccggc ctccaacaca ccggcgatga tgcgggcttt gttcgatgcc ggggtggacg
     1021 tgttccgcat caatatgagc cacaccagcc atgagatgct gaaacagatg cacggggcct
     1081 tgcgggctct gtcggaggag gtgggacggc cgatcggcat cttgtgcgat cttcaagggc
     1141 cgaagatccg gctgggcgtc ctgcccggcg gctcgcgcat gctggtgcag gacgagcgca
     1201 tccgcctggt gctgggcgaa tccagcgaca agcccgaaga gattccgatt ccccatcccg
     1261 aaatcttcca ggccatcaag cagaagcatg ccctgctgat cgatgacggc aagattcggc
     1321 tgcggctgct gcgcaaatcc gatacctttg ccgaagccgt ggtggaagtg ggcggcgaga
     1381 tcaagaaccg caagggcgtc aacatgcccg acaccttgct gccgatgtcg gccatgacgc
     1441 ccaaggaccg cgccgatctg gacgcggcgc tggaactggg ggtggactgg atcgcgctat
     1501 ccttcgtgca gcgccccgaa gacgtggcgg aactgaagaa gatcgtggcg ggccgcgccg
     1561 gtgtgctggc caagattgaa aaacccaagg ccctggcctc gctgcacggc atattggaat
     1621 tggccgacgc gttgatggtg gcgcgcggcg atctgggggt ggaaatgccg ctggagcgcg
     1681 tgcccggcct gcaaaagcag atcactcgcg ctgcccgcaa ggcgggcaag ccggtagtgg
     1741 tggcaaccca gatgctggaa tccatgatcc tgtcgcccat gcccacccgg gccgaagttt
     1801 cggacgtggc caccgccgtg ttcgatggcg ccgatgcggt gatgctgtcg gcggaatccg
     1861 ccagtggcag ttttccggtg gaagcggtgc agaccatgga ccgcatcgcc atgtcggttg
     1921 aggatgacga gctgtatcat tccatcatcg aatcccagcg cggcacgccg gaaaagacca
     1981 cgccagacgc catcatggcg gcggtgcatg aagtgaccca gaccatcgag gcccgcgcca
     2041 tcgtgtgctg gaccaaatcc ggcatcaccg ccatgcgcgc gacgcgggaa cgcagccagg
     2101 cgccgatcat cgcccccaca ccctcgatcg aaaccgcgcg gcggctgtgc ctggtatggg
     2161 gcacccacag cgtcatcacc gaggatatcc gcgacttcga cgatatggtg aagcgcgcca
     2221 gccagatcgc ccgccaggaa ggtt
//
LOCUS       DATMDK010000399         4056 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1804400,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000399 DATMDK010000000
VERSION     DATMDK010000399.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 4056)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4056)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4056
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1804400"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..771
                     /locus_tag="VNN98_07675"
     CDS             <1..771
                     /locus_tag="VNN98_07675"
                     /inference="COORDINATES: protein motif:HMM:NF012958.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase-fold protein"
                     /protein_id="HWM62015.1"
                     /translation="PFPAEQLSKPGRYERHVYVYIPKQYVPGSAAPFMVVQDGHGYIN
                     RMAPVLDTMIAAHRVPAMIVIAPDSGGSDAQGSERGLEYDTLSDRYSNWVESELLPAV
                     TKNYGVKFTSDPEGRATMGGSSGAICAWTMAWYHPEHYHKVLSYSGTFVNQASPQDAK
                     TPRGGWEYHANLIPKTAKKPIRMWMEVGEKDLHFDDAESTWHNWPLANNRMAAVLKKK
                     GYDYRYVFATGAHHVDPRVVKQTLPAALEWLWRDYPKS"
     gene            complement(863..1900)
                     /locus_tag="VNN98_07680"
     CDS             complement(863..1900)
                     /locus_tag="VNN98_07680"
                     /inference="COORDINATES: protein motif:HMM:NF015751.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-keto-3-deoxygluconate permease"
                     /protein_id="HWM62016.1"
                     /translation="MQLAIKRGLERIPGGMVIVPLTIGALIGTFAPGTARFFGSFTGA
                     LFSGALPILAVFYVCMGATIPFETLPQVAGKGGVLLAAKVAMGVIAALVVGHFLGTKP
                     VETGLLAGLSTLAVVVAINDTNGGLYMALMGRYGTPQEMGAYSIMSLESGPFITMITL
                     GGLLAFPWQTLLGAILPLAIGIALGNLDREMRDFLGKAAPALIPFFAFAIGASLNLAT
                     VWRAGLLGLALGVLVLVISCIVMFLADRVSGGKGVAGLAAAATAGNAAAVPALVAAAN
                     PAYAAAAPAATVLVAASVVITMLTVPLVTAWWARKIVAARSSPNCHGPQMRATQVTVV
                     ALEELSRSKIS"
     gene            2013..3695
                     /locus_tag="VNN98_07685"
     CDS             2013..3695
                     /locus_tag="VNN98_07685"
                     /inference="COORDINATES: protein motif:HMM:NF024753.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-binding-like beta-propeller repeat protein"
                     /protein_id="HWM62017.1"
                     /translation="MTRISTTLKLAVLAALATPVAAQQLAPTPPVRPEPPPVLKLMEP
                     GPAVPDWLSYNYDSQRTGWNRGETILSTKTVGKLKPLWNIQLTTASSALVLSTLTAPV
                     VAGGVTTPGGPKDLVFSISIEDTLTALDAASGQIVWQKKFPNPLKPLRPASISCSNTE
                     QATPVIDKAKGVIYFTASDGKLRGAKLGDGAQAITPTDMVQPFSRSWSLNLVDDVVYT
                     TAARGCGGSPAQPIEFGTVAAMDVSDPAHPSLSRFYTGKGRPAGPWGASGVAWGPQGA
                     YVSTADGPNNPGSGIYGDMVLAVRPHAWGLNDSFTPTHWKYVNARDLDLGSGGVLLFT
                     LGKRNILATASKETVIYLLDADNLGGVDHMSALYQSPRWGNDTQDFQANGIWGNLATS
                     LNDKGERWLYTPMWGPPAKAGPKFPIANGDAADGSIMAFKVVEENGKPVLQPGWISRD
                     LNLAAPPVVANGVVYALQTAESTIQVPKSVFNADGSRNPWTPEQGANNRIMVPHATMT
                     LFAFDADTGKQLWSSGKTMDGNTVHFTQPVVALGKLFAVDHAGHLWAFGLKR"
     gene            3898..>4056
                     /locus_tag="VNN98_07690"
     CDS             3898..>4056
                     /locus_tag="VNN98_07690"
                     /inference="COORDINATES: protein motif:HMM:NF012722.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase dimerization/phospho-acceptor
                     domain-containing protein"
                     /protein_id="HWM62018.1"
                     /translation="MQLRKYTECAIRAARAEAELNHRSKSSFLSTMSHELRTPLNAII
                     GFSDLIRTP"
BASE COUNT          787 a         1345 c         1251 g          673 t
ORIGIN      
        1 ccgttcccgg ccgagcaact gtccaagccc ggccgctatg agcgccatgt ctatgtctat
       61 atccccaagc aatatgtgcc gggcagcgcg gcgcctttca tggtggtgca ggacggccat
      121 ggctatatca accgcatggc gccagtgctg gacactatga tcgcggcgca ccgcgtgccc
      181 gccatgatcg tcatcgcgcc ggattccggc ggcagcgacg cccagggttc agagcgcggg
      241 ttggaatacg acaccttgtc ggatcgctat tccaactggg tggaatccga actgctgccg
      301 gcggtgacga agaattatgg cgtgaagttc acgtccgatc cggaggggcg cgccaccatg
      361 ggcggctcgt cgggcgcgat ctgcgcctgg accatggcct ggtaccatcc cgagcactat
      421 cacaaggtac tgagctattc gggcaccttc gtgaaccagg cctcgcccca ggacgccaag
      481 acgccgcgcg gcggctggga gtatcacgcc aatttgattc ccaaaacggc gaaaaagccc
      541 atccgcatgt ggatggaagt gggcgaaaag gacctgcatt tcgacgatgc ggaatccacc
      601 tggcacaatt ggccgctggc caataaccgc atggcggcgg tgttgaagaa aaagggttat
      661 gattatcgct atgtcttcgc cacgggggcg catcacgtcg atccgcgggt ggtgaagcag
      721 accttgccgg cggcgctgga atggctgtgg cgcgattatc cgaagagctg aactcgatgt
      781 catggcccgc caccccggtc cgcgcgaagc gcggccggag tgtaaactcc gtgcgggcca
      841 cccagttggg ccaagctcaa tatcaactga ttttactgcg gcttaattct tctaaagcaa
      901 ccactgtcac ctgggtggcc cgcatttgcg ggccatgaca attggggctg cttctggcgg
      961 caacaatctt cctcgcccac caggcagtga caagcggcac tgtcagcatg gtgatcacta
     1021 cgctggccgc caccagcaca gtggcggcag gggccgccgc cgcataggcc ggattggcgg
     1081 cggcgaccaa cgcgggcacg gcggcggcat tgcccgccgt tgccgcggcc gccagccccg
     1141 ccacaccctt gccgccgctg acgcggtcgg ccaggaacat cacgatgcag gagatcacca
     1201 gcaccaacac gcccagcgcc agtcccaaca atcccgcccg ccaaaccgtg gccaagttga
     1261 gcgaggcgcc gatggcgaaa gcgaaaaagg ggatcagcgc cggcgcggcc ttgcccaaaa
     1321 agtcgcgcat ctcgcggtcc agattgccca gcgcaatgcc gatagccagc ggcaggatgg
     1381 cgcccagcag ggtctgccag ggaaaagcca ggaggccgcc caaggttatc atggtaatga
     1441 aggggccgga ctccagcgac atgatcgaat aggcacccat ctcttgcggc gtgccgtagc
     1501 ggcccatcag cgccatataa agcccgccat tggtgtcgtt gattgccacc accaccgcca
     1561 gggtggaaag cccggccagc aatccggtct ctactggctt ggtccccagg aaatggccca
     1621 ccaccagcgc cgcgataacc cccatcgcca ccttcgctgc cagcagcacg ccgcccttgc
     1681 ccgcaacctg gggcagggtc tcgaacggga tggtggcgcc catgcagaca tagaacaccg
     1741 ccagaatggg cagggcgccg ctgaacagcg ccccggtgaa cgagccgaag aagcgcgccg
     1801 tccccggcgc gaaggtgccg atcagcgcgc cgatggtcag cggcacgatc accatgccgc
     1861 cgggtatgcg ctcgaggccg cgcttgatcg ccagctgcat ttttccccct attttcggtc
     1921 agtttagccg cgcccaggct cagttgacag ccgggatggg gatgggggac gcttgacttc
     1981 aagatggctt cttgaccgtc gcaggggacc ggatgaccag gatttcaacc acacttaagc
     2041 ttgcggtttt ggccgcgctc gctacgcccg tggcagccca gcagttggcg ccgacgccgc
     2101 ctgtccgccc cgagccgccg ccggtgctca agctgatgga gccgggtccc gcagtgcccg
     2161 actggctgtc ctacaattac gattctcagc gcaccgggtg gaatcgcggt gaaaccatcc
     2221 tgtcgacgaa gacggtgggt aagctgaagc ctttgtggaa catccagctc accaccgcgt
     2281 ccagcgccct ggtcctttcc actctgaccg cgcccgtggt ggccgggggc gtgaccacgc
     2341 caggcgggcc caaagatctg gtgttcagca tcagcatcga agacaccttg accgcgctgg
     2401 acgcggccag cggccagatc gtgtggcaga agaagttccc caatcccctg aaaccgctgc
     2461 gtccggcttc catcagctgc tccaataccg agcaggcgac gccggtgatc gataaggcca
     2521 agggggtgat ctatttcacc gccagcgacg gcaagctgcg cggcgccaag ctgggcgacg
     2581 gtgcgcaggc catcaccccc actgacatgg tgcagccctt cagccgcagc tggagcctca
     2641 atctggtgga cgatgtggtc tacaccacgg cggcgcgcgg ctgcggcggc agtcccgctc
     2701 agcctatcga attcggcacc gtggcggcga tggacgtttc cgatcccgcc catcccagcc
     2761 tgtcgcgctt ctataccggc aagggccgtc ccgccggtcc ctggggcgcc agcggcgtgg
     2821 cctggggccc gcaaggcgcc tatgtcagca cggccgacgg ccccaacaat ccgggcagcg
     2881 gcatctatgg cgacatggtg ctggcggtgc gcccgcacgc ctggggcctg aacgacagct
     2941 tcaccccgac ccactggaaa tacgtcaacg cccgcgacct cgatctgggt tcgggcgggg
     3001 tgctgctgtt caccctgggc aagcgcaaca tcctcgccac cgcctccaag gagacggtga
     3061 tctatctctt ggacgccgac aatctgggcg gggtggatca catgagcgcg ctgtaccagt
     3121 cgccgcgctg gggcaacgat acccaggact tccaggccaa tggcatatgg ggcaatctcg
     3181 ccaccagctt gaacgacaag ggcgagcgct ggctttacac cccaatgtgg ggcccgcccg
     3241 ccaaggcggg accgaaattt cccatcgcca atggcgatgc cgccgatggc agcatcatgg
     3301 ccttcaaggt ggttgaggaa aacggcaagc cggtgctgca gccgggatgg atttcacgcg
     3361 acctcaacct ggccgcgccg ccggtggtag ccaatggcgt ggtctatgcc ctgcagacgg
     3421 cggaaagcac catccaggtg cccaagagcg ttttcaatgc cgacggcagc cgcaatccct
     3481 ggacgccgga gcagggcgcc aacaaccgca tcatggtgcc gcatgctacc atgaccctgt
     3541 tcgccttcga cgccgacacc ggcaagcagt tatggtccag cggcaaaaca atggacggca
     3601 acacggtgca ttttacccag ccggtggtgg cgctgggcaa gctgttcgcg gtggaccatg
     3661 ccggacatct ctgggccttc ggcctgaagc gttaagacag gtattgcgca tacaatacaa
     3721 ctacagggta caactcctgt gattgcgatt gccggcccgt taaccggcgg caaaggcctc
     3781 gccctctagg ttgccgcgac tgccgggggg ttgtttgccg tggccatgcc gggccgaaat
     3841 ctgcgtccgc agaaaaccag ccgcttgctt gccaggtatt gcgacacctt cggcgaaatg
     3901 cagctgcgca agtataccga atgcgccatc cgtgccgccc gcgccgaggc cgaactcaat
     3961 caccgctcca agtcgagctt tctttcgacc atgagccatg agctgcgcac cccgctcaac
     4021 gccatcatcg gtttctccga cctgatccgc acaccc
//
LOCUS       DATMDK010000400         3115 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1566424,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000400 DATMDK010000000
VERSION     DATMDK010000400.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3115)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3115)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3115
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1566424"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(158..718)
                     /locus_tag="VNN98_07695"
     CDS             complement(158..718)
                     /locus_tag="VNN98_07695"
                     /inference="COORDINATES: protein motif:HMM:NF013989.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrofolate reductase family protein"
                     /protein_id="HWM62019.1"
                     /translation="MPRLNMFNSISLDGYFTDSNNDMSWAHAGSDDPEVRDFTAGNAK
                     GAGALVFGRVTYDMMARFWPTPMAAQMMPEVAAGMNRAPKYVFSRSLQKADWAGTTVL
                     NGDPAQEIARLKRENGPGLTVLGSGSIVKQLTAAGLIDDYQLMVCPVILGGGRTLFEG
                     NTGQPVLELANSRIFKNGRVFLHYTA"
     gene            complement(721..1287)
                     /locus_tag="VNN98_07700"
     CDS             complement(721..1287)
                     /locus_tag="VNN98_07700"
                     /inference="COORDINATES: protein motif:HMM:NF013989.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008703 -
                     5-amino-6-(5-phosphoribosylamino)uracil reductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrofolate reductase family protein"
                     /protein_id="HWM62020.1"
                     /translation="MEKPVRRLILKMHMSLDGFVGRLDGDVGFIFKSLDDPLTYSIVQ
                     DVWQAGLHIMGAKTYGDMAAWWPTSDEPFAPPMNTIPKAVFSDTLEEAPWGPVQIIRG
                     DLTTGIAHLKAQPGKDIYAHGGASFARALIAADLVDEYRLVIHPVAIGRGLAIFSGLP
                     QSRDLALVESKSFPKGAVANIYHPVRKE"
     gene            complement(1287..1748)
                     /locus_tag="VNN98_07705"
     CDS             complement(1287..1748)
                     /locus_tag="VNN98_07705"
                     /inference="COORDINATES: protein motif:HMM:NF018663.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HWM62021.1"
                     /translation="MTIKSITPFLWFDTQAEDAANYYVSLFPGSKIKQVSRYGDAGPG
                     PKGSVMVVSFELTGQSFFAMNGGPNYKLTSAFSLMVNCTEQAEIDRLWEALGATPNVC
                     GWTTDKFGLTWQVNYAGWPALMAGPNAAKAMAAMMGMKKINIQALKDAAIP"
     gene            complement(1759..2217)
                     /locus_tag="VNN98_07710"
     CDS             complement(1759..2217)
                     /locus_tag="VNN98_07710"
                     /inference="COORDINATES: protein motif:HMM:NF019928.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC family protein"
                     /protein_id="HWM62022.1"
                     /translation="MTSHEMSLTRLMDVPADKLFHCWTEPSLMKQWFAPKPYTTPVAE
                     VDLRPGGASNVVMKSPDGQEIPCPGQYLEVVPGRKLVFTDAFTGDWMPKEGAPFMLAI
                     ISFEPDGSKTRYTATVRHWSEADRKKHEEMGFYPGWGQCADQLEALAKTI"
     gene            2362..2751
                     /locus_tag="VNN98_07715"
     CDS             2362..2751
                     /locus_tag="VNN98_07715"
                     /inference="COORDINATES: protein motif:HMM:NF015735.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YciI family protein"
                     /protein_id="HWM62023.1"
                     /translation="MLYTLLCYNKEDVVWSWSKEEDDAVMARLSVVHEKLVKEGKLGT
                     SLRLLPTTAATTLRGGDLVIDGPFAETKEQLLGFYVIDVESLDAALAVAKQLSAANPT
                     SVYEIRPIALYVPDARPNAPTQMIKVY"
     gene            2765..>3115
                     /locus_tag="VNN98_07720"
     CDS             2765..>3115
                     /locus_tag="VNN98_07720"
                     /inference="COORDINATES: protein motif:HMM:NF016430.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma factor"
                     /protein_id="HWM62024.1"
                     /translation="MTDMAWINGALTAARPQAIGALLRYFRDMDRAEEAFQDACLRAL
                     KSWPEKGPPRDPTAWLILVGRNAALDGVRKQSRTTELPPDEELSDLGDAESELAERLD
                     GSHYRDDVLRLLFIC"
BASE COUNT          578 a          994 c          931 g          612 t
ORIGIN      
        1 tagcggcgcg cagcggcgct caacccattg atttttcagg tgaggggtga atgtgcgccg
       61 taacccctca cctagcaaaa tctaagcact tagctccgca tgcgctccgc taagtgcaag
      121 attttgcgtc ctctccctca aggggagagg gaaggaacta ggcggtgtaa tgcaggaaca
      181 cccgcccgtt cttgaaaatg cggctgttcg ccagctccaa gaccggctgg ccggtattgc
      241 cttcgaacaa ggtgcggccg ccgcccaata tcaccgggca gaccatcaat tgataatcgt
      301 cgatcagtcc cgccgctgtc agttgcttga cgatgctgcc gctgcccagc accgtcagcc
      361 ctggtccatt ctcgcgcttc agccgcgcga tttcctgcgc cgggtcgccg ttcagcacgg
      421 tggtacccgc ccaatccgcc ttttgcagac tgcgcgaaaa gacatatttc ggcgcccggt
      481 tcatgccggc ggccacctcc ggcatcatct gcgccgccat gggcgtgggc cagaatctgg
      541 ccatcatgtc ataggtgacc ctgccgaaca ccagcgcgcc ggcgcccttg gcgttgccgg
      601 cggtgaagtc ccggacctcg ggatcgtccg acccggcatg ggcccagctc atgtcgttgt
      661 tgctatcggt gaaatagccg tccagcgaga tgctgttgaa catgttcagc ctgggcatgg
      721 tcattccttc ctgacgggat gatagatgtt ggccacagcg cccttgggga agcttttgct
      781 ctccaccagc gccaggtcac ggctttgcgg caggcctgag aatatcgcca ggccacggcc
      841 gatcgccacc ggatggatca ccagacgata ttcgtcgacc aggtcggcgg cgatcagcgc
      901 gcgggcgaag ctggcgccgc catgggcata gatatccttg cccggctggg ccttgagatg
      961 cgcaatcccg gtggtgagat cgccgcgaat gatttgcacc ggaccccagg gcgcctcttc
     1021 cagagtatcg gaaaacaccg ccttgggaat cgtattcatc ggcggggcga agggttcgtc
     1081 ggaggtcggc caccaggccg ccatgtcgcc ataggtcttg gcgcccatga tgtgcagccc
     1141 cgcctgccac acatcctgca cgatcgaata ggtcaaagga tcgtcgaggc ttttgaagat
     1201 gaagccgaca tcgccgtcca gccggccgac aaagccgtcc agcgacatgt gcatcttcag
     1261 gatcagccgg cgcacgggtt tttccatcaa gggatggcgg cgtccttcag cgcctggatg
     1321 ttgattttct tcatccccat catcgcagcc atcgccttgg cggcgttggg gccggccatc
     1381 agcgccggcc agccggcata attgacctgc caggtgaggc cgaacttgtc cgtggtccag
     1441 ccgcagacat tgggcgtcgc gcccagcgcc tcccacagcc ggtcgatctc ggcctgttcg
     1501 gtgcaattca ccatcagcga gaaggcggag gtcagcttat agttcgggcc gccgttcatc
     1561 gcaaagaagc tctggccggt cagctcgaag ctcaccacca tcacactgcc cttgggaccc
     1621 ggcccggcat cgccataacg cgagacctgc ttgatcttcg aacccggaaa cagcgagaca
     1681 taataatttg cggcgtcttc cgcctgggtg tcgaaccaca ggaagggcgt gatgcttttg
     1741 atggtcatga ttttttcctt aaatggtctt ggccaaggct tccaactggt cggcgcactg
     1801 gccccagccg ggatagaagc ccatctcttc atgcttcttg cggtcggcct cgctccaatg
     1861 gcggaccgtg gcggtgtaac gcgtcttgct gccgtccggt tcaaaactga taatggccaa
     1921 catgaagggc gcgccttcct tgggcatcca gtcgccggtg aaggcgtcgg tgaacaccag
     1981 cttgcggccc ggtaccactt ccagatactg accggggcag gggatctcct ggccgtccgg
     2041 gctcttcatc accacattgc tggcgccgcc tggccgcaga tccacctcgg ccaccggggt
     2101 ggtgtagggc ttgggcgcga accactgctt catcaggctg ggctcggtcc agcagtggaa
     2161 cagcttgtcg gccgggacat ccatcaggcg ggtcagtgac atttcgtgac tggtcatgtt
     2221 ttcctccagg tttcgcaaaa atctgaccca aggacggccc tggggcagcc gggccgacaa
     2281 aaaccggcgg atttattttt ttgcgcccct gtcggaccgc gccatactct cccgtcctcg
     2341 gaaggtatca aaggaaccgc tatgctctac accctgcttt gttacaacaa ggaagacgtc
     2401 gtctggtcct ggagtaagga ggaagacgat gccgtcatgg cccgtctttc cgtggtgcac
     2461 gaaaagctgg tcaaagaggg caagctgggc accagcctgc gcctgctgcc caccaccgcc
     2521 gccaccaccc tgcgcggcgg cgacctggtg atcgacggcc ccttcgccga aaccaaggag
     2581 cagttgctgg gtttttacgt catcgatgtg gaaagcctcg acgccgcgct ggcggtggcc
     2641 aagcaactat ccgccgccaa tcccaccagc gtctatgaaa tccgccccat cgccctatat
     2701 gtgccggatg cgcgccccaa cgcgccgacc caaatgatca aagtctactg atgcccctct
     2761 tctcatgaca gatatggcct ggatcaacgg cgccttgact gccgcccggc cgcaggcgat
     2821 cggggccttg ctgcggtatt tccgcgacat ggaccgggcg gaggaggcgt tccaggacgc
     2881 ctgcctgcgc gccctgaaaa gctggccgga aaaaggcccg ccgcgcgatc ctaccgcctg
     2941 gctgatcctg gtggggcgca atgctgccct ggatggggta cgcaaacaga gccgcaccac
     3001 cgaattgccg ccggatgagg agctttccga cctgggcgat gcggaaagtg agctggccga
     3061 gcggctggac ggctcgcact atcgcgacga tgtgctcagg ctgctgttca tctgc
//
LOCUS       DATMDK010000401         2890 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1566479,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000401 DATMDK010000000
VERSION     DATMDK010000401.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2890)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2890)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2890
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1566479"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            234..383
                     /locus_tag="VNN98_07725"
     CDS             234..383
                     /locus_tag="VNN98_07725"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM62025.1"
                     /translation="MATADIQGKDETKLANGGGAFPFWVSVIIVTGFFAVLFAIVYAV
                     VQLFS"
     gene            459..998
                     /locus_tag="VNN98_07730"
     CDS             459..998
                     /locus_tag="VNN98_07730"
                     /inference="COORDINATES: protein motif:HMM:NF015444.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PPC domain-containing DNA-binding protein"
                     /protein_id="HWM62026.1"
                     /translation="MKLFPSLLLIFLALPFGAAAQIARHPATPEDARPNDPKVPDSYA
                     LSGKFDRVLVLRMKNKTDLLAEMEKQVKQQHIQNAVILAGIGSLRGYRVHNVASRDYP
                     VADMFTGNPAMPVDLIGMNGYIVHGVIHAHVIMAAGDKAATTISGHLEKGSEVLTFAV
                     VTVGVLNTDLGRVDDATYR"
     gene            complement(989..2869)
                     /locus_tag="VNN98_07735"
     CDS             complement(989..2869)
                     /locus_tag="VNN98_07735"
                     /inference="COORDINATES: protein motif:HMM:NF024753.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrroloquinoline quinone-dependent
                     dehydrogenase"
                     /protein_id="HWM62027.1"
                     /translation="MKKLMLVMIAACLPLATTQAAPSASAPFANDWVSYGHDAGGGRF
                     SPLTQITPDNVSQLQLAWTYHMNPVPDAKAGSRIPTSTTTPLVASGMLYLGTPYGRVV
                     ALDSTSGKQLWAYQLPGNDQPPFRGLGYWPGDGKLKPRIIFGSAQGRLIALDAKTGAP
                     AKGFGVDGVVDTKTPEIMNGLPNAYYGYSSPPDIYKNLAIIGSRVQEAPSKGASGDVR
                     AWDVLTGKLVWTFHSIPRPGEKFHDTWEDDGWKQRSGVNVWNMLTIDAKRGIAYLPFG
                     APTFDRYGGDHKGANLFSDAVVAVDANTGKYLWHFQAVHHDVWDFDLDTPPVLLELNK
                     DGKHIPAIAVMNKSALLFILNRITGEPIFGLTETPVPASPVASETAWPTQPIPNKPVQ
                     LARSSFNLDEVADLTPEHRAVCQAMIDKDHLTGSKRFEPIPADHAIVRFPGGEGGPEW
                     AGGAFDPQLGLFIVNTNNFGYIEKLMKGENGEWNMTSGHFVDPKTRLYCQQPPWGMLT
                     AVNVNTGDIAWQVNLGISDLLPEGKQNTGRPSNGGPIVTASGVTFIGGTDDHRFRAFD
                     SKTGKELWTTKLDYSAHATPITYQGKDGRQYVAIVATGGSYLASPSGGDSLMVYALPP
                     QR"
BASE COUNT          534 a          853 c          911 g          592 t
ORIGIN      
        1 tagcggcgcg cagcggcgct caacccattg atttttcagg tgaggggtga atgtgcgccg
       61 taacccctca cctagcaaaa tctaagcact tagctccgca tgcgctccgc taagtgcaag
      121 attttgcgtc ctctccctca acgggagagg gggctttcgt gattcaatcg caacctgctc
      181 tgatttgaca aagccggggc tgggcttaaa agaccgctca aaggagactt tccatggcga
      241 ccgcagacat acaaggcaag gacgaaacca agctggccaa tggcggcggc gcctttccct
      301 tctgggtctc ggtgatcatc gtcaccggct ttttcgcggt cctgttcgcg attgtctatg
      361 ccgtggtcca gctcttcagc tgaccgtctt agttgttcgg tctggcccgg cgccgttttt
      421 tccggctaat ctgcccccac acaaaacaag gggactccat gaagcttttc ccatcgctgc
      481 ttctgatttt cctggccctg ccgttcggcg cggcggccca gatcgcgcgc catcccgcca
      541 cgccggaaga tgcgcgcccc aatgatccca aggtgcccga ttcctatgcg ctgagcggca
      601 agttcgaccg cgtcctggtg ttgcggatga aaaacaaaac cgacctgctc gctgaaatgg
      661 aaaagcaggt gaagcagcag cacattcaga atgcagtgat cctggccggc atcggctcgc
      721 tgcgcggtta tcgtgtccac aatgtcgcca gccgcgacta tccggtggcc gatatgttca
      781 ccggcaatcc cgccatgccg gtcgatctga tcggaatgaa cggctatatc gtgcacggcg
      841 ttatccacgc gcatgtcatc atggcggccg gcgacaaggc cgccacgacc atctcgggac
      901 atctggaaaa gggcagcgag gtgctgacct tcgccgttgt caccgtgggc gtgctcaata
      961 ccgatctggg acgtgtggac gacgcaacct atcgctgagg cggtagggca tacaccatca
     1021 gcgagtcccc gccggatggg ctggcgaggt aggacccgcc ggtcgcgacg atcgccacat
     1081 attgccgtcc gtccttgcct tgataggtga tgggcgtggc atgggcggaa taatcaagct
     1141 tggtggtcca caattctttg ccggtcttgc tgtcgaaggc gcggaagcga tgatcgtcgg
     1201 tgccgccgat aaaggtgacg ccgctggcgg tgacaatcgg cccgccattg ctggggcggc
     1261 cggtattctg cttgccttcg ggcaacaggt cggagatgcc cagattgacc tgccaggcaa
     1321 tgtcaccggt gttgacgttg acggcggtga gcatgcccca gggcggctgc tggcaataaa
     1381 gccgcgtctt gggatcgacg aagtggcccg aggtcatatt ccattcgccg ttttcgcctt
     1441 tcatcagttt ttcgatgtag ccgaaattgt tggtgttgac gatgaacagc cccagctggg
     1501 gatcgaaggc gccgccggcc cattccgggc cgccttcgcc gccggggaag cgcacgatgg
     1561 cgtgatcggc aggaatgggt tcgaagcgtt ttgatccggt gagatgatcc ttgtcgatca
     1621 tggcctggca cacggcgcgg tgttccggcg tcaggtcggc gacttcatcc aggttgaagc
     1681 tggaacgcgc cagctgcacc ggcttgttcg gaatcggctg ggtcggccag gccgtctcgc
     1741 tggcaaccgg cgacgccggc accggggttt cagtgaggcc gaagatgggc tcgccggtga
     1801 tccgattcag gataaagagc agtgcactct tgttcatcac cgcgatggcg ggaatgtgtt
     1861 tgccgtcctt gttgagttcc agcagcaccg gcggggtgtc caggtcaaag tcccagacgt
     1921 cgtgatgtac cgcctggaaa tgccaaagat attttccggt attggcgtcc accgccacca
     1981 cggcgtcgct gaacaggttg gcgcccttat ggtcgccgcc ataacggtcg aaggttggcg
     2041 ccccgaacgg cagataggcg atgccgcgct tggcgtcgat ggtcagcatg ttccagacat
     2101 tgacgcccga gcgctgcttc cagccgtcat cttcccaggt gtcgtggaat ttctcgcccg
     2161 ggcggggaat ggaatggaaa gtccagacca gcttgccggt cagcacgtcc caggcgcgca
     2221 catcgcccga cgcgcccttg gacggggctt cttggacgcg gctgccgatg atggccaggt
     2281 tcttgtagat gtcgggcggc gaggaatagc cgtaataagc attgggcaag ccgttcatga
     2341 tctccggcgt cttggtgtcc accacaccgt ccaccccgaa acctttcgcc ggtgcgccgg
     2401 tcttggcgtc cagcgcgatc aaccgtcctt gcgcgctgcc gaaaatgatg cggggtttga
     2461 gcttgccgtc gccgggccaa tagccaagtc cgcgaaaggg cggctggtcg ttgccgggaa
     2521 gctgataggc ccaaagctgc ttgccgctgg tggaatccag cgccaccacc cggccataag
     2581 gcgtacccag ataaagcatg ccactcgcca ccagcggcgt ggtggtggag gtagggatac
     2641 ggctgccggc cttggcgtcc ggcaccggat tcatgtgata ggtccaggcg agttgaagct
     2701 ggctcacatt gtccggtgta atctgggtca acggcgaaaa gcgcccgccg cccgcatcat
     2761 ggccgtagga cacccaatca ttcgcaaagg gggcgctcgc ggacggcgcg gcttgggtgg
     2821 tggccagcgg caagcaggcg gcgatcatga cgagcatcag ctttttcatg tgcagtcctc
     2881 aagatttcag
//
LOCUS       DATMDK010000402         4440 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_175749,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000402 DATMDK010000000
VERSION     DATMDK010000402.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 4440)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4440)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4440
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_175749"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..752
                     /locus_tag="VNN98_07740"
     CDS             <1..752
                     /locus_tag="VNN98_07740"
                     /inference="COORDINATES: protein motif:HMM:NF024950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HWM62028.1"
                     /translation="QVAVITGGGSGIGAATAHAMAKEGAEVAILDRDLEAAKAAAKKI
                     GGKALAVECDVTNPQSVRAAFDAVVSAFGGVDIVVSNAGAAWQGAIGHVDDEILRKSF
                     ELNFWAHQAVAQQATRIMLAQGTFGCLLFNTSKQAVNPGKDFGPYGLPKAATLFLVKQ
                     YALDHGKDGIRANAVNADRIRSGLLTDDMVAARSKARGLSEADYMAGNLLKREVTAED
                     VADAFVYLATASKTTAAVVTVDGGNIEASLR"
     gene            873..1877
                     /locus_tag="VNN98_07745"
     CDS             873..1877
                     /locus_tag="VNN98_07745"
                     /inference="COORDINATES: protein motif:HMM:NF028479.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidyl-alpha-hydroxyglycine alpha-amidating
                     lyase family protein"
                     /protein_id="HWM62029.1"
                     /translation="MHAHHALFAVFVLGAGLAQAQPVAMPPPHDPNDYPNPYHVDEGW
                     AKLGRTFGGISAVDIDRDGKSVWVFERCGKSDDGCAKDKTLDPVLKFDASGKLVKHWG
                     AGEFLYPHGIFIGRDNHVWLVEGTSQSGVVANVIREFTQDGKLLRTMGKSGTAGYATD
                     RFDGASDVLVAPDGSIFVADGHSNKTNNRILKYDRKGSFLHSWGKLGSGPGEFNSPHG
                     LAMDRQGRLYVADRSNSRIQIFDQQGKFLAEWRQFGRPSGLFIKGDMLYVADSLSSAQ
                     NNPGFKNGIRWGHISDGKVIGFIPWGEYNAIEAVAVDDKDNIYTGFTNVPNFRRWVKN
                     "
     gene            complement(2250..3347)
                     /gene="ychF"
                     /locus_tag="VNN98_07750"
     CDS             complement(2250..3347)
                     /gene="ychF"
                     /locus_tag="VNN98_07750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000506572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="redox-regulated ATPase YchF"
                     /protein_id="HWM62030.1"
                     /translation="MGFKCGIVGLPNVGKSTLFNALTQTAAAQAANYPFCTIEPNVGD
                     VAVPDPRLETLAKIAGSQEIIPTRITFVDIAGLVRGASKGEGLGNQFLANIREVDAVA
                     HVLRCFVDDDITHVEGKIDPISDAEIVETELMLADLESLEKRIKPLEKKANSGEKEAK
                     EALALMMKAVTLLREGKPARRAELTADERGPYSQLGLMTAKPVLYVCNVEEAAAGSGN
                     AISAKVEAMAKAEGARSVVISARVEEEIAQLPNEERGDYLASIGLEEPGLNRLIRTGY
                     DLLGLLTFFTIGPKEARAWTVTKGSRGPQAAGVIHTDFEQGYIRAETIAYPDYVAGKG
                     EAGAREAGKFRLEGKDYVVADGDVMHFRFNN"
     gene            complement(3347..3955)
                     /gene="pth"
                     /locus_tag="VNN98_07755"
     CDS             complement(3347..3955)
                     /gene="pth"
                     /locus_tag="VNN98_07755"
                     /EC_number="3.1.1.29"
                     /inference="COORDINATES: protein motif:HMM:NF013368.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004045 - aminoacyl-tRNA hydrolase
                     activity [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminoacyl-tRNA hydrolase"
                     /protein_id="HWM62031.1"
                     /translation="METPLLIAGLGNPGTQYAKNRHNAGFIVVDELHAHYKFGPWKAK
                     FDGLLSEGTLGGRKTYLLKPQTFMNLSGNAIGPALRFFKLPLEALVVVHDEIDLAAGK
                     LKVKTGGGDAGQNGLRSITATLGPDYRRVRLGIGHPGEKTRVTGHVLQNFSKDDIGWL
                     KPLVMAMVDAAPLLAKDDDAGFMSKVALLLKPPPKPKKKDTE"
     gene            complement(3977..>4440)
                     /locus_tag="VNN98_07760"
     CDS             complement(3977..>4440)
                     /locus_tag="VNN98_07760"
                     /inference="COORDINATES: protein motif:HMM:NF026044.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM62032.1"
                     /translation="MRLAEGATVRLEIPVHFNGQDVSPGLKKGGVLNIVRHSIGLICP
                     ADAIPNTIEVDVSALDINETIHINSLALPSGVKPVIRGRDFTVCSIVAPTSVIEEQRA
                     AAAAAAAPVVEVAPAEGAAPTAGAAAPAAGAAAPAAGAKPAAGAKPAPAKK"
BASE COUNT          798 a         1391 c         1412 g          839 t
ORIGIN      
        1 gccaggtggc ggtgatcact ggcggcggtt cgggcatcgg cgccgccacg gcgcacgcca
       61 tggcgaaaga gggtgcggaa gtcgccattc tggaccgcga cctggaagcg gccaaggcgg
      121 cagccaagaa aatcggcggc aaggcgctgg cggtcgagtg cgacgtcacc aacccgcaaa
      181 gcgtgcgcgc cgccttcgat gccgtggttt cggcctttgg cggcgtggat attgtggtct
      241 ccaatgccgg cgcggcctgg cagggcgcca tcggtcatgt cgacgacgag atcttgcgca
      301 aaagtttcga gctgaatttc tgggcgcacc aggcggttgc ccagcaggcc acgcgcatta
      361 tgctggccca aggcaccttt ggctgcctgc tgttcaacac ctccaagcag gcggtcaatc
      421 cgggcaagga tttcgggcct tacgggttgc ccaaggcggc gaccctgttc ctggtcaagc
      481 agtacgccct ggatcacggc aaggacggca tccgcgccaa tgcggtcaat gccgaccgca
      541 tccgctcagg gctcctgacc gacgatatgg tggcggcgcg ttccaaggcg cgcggcctgt
      601 ccgaggccga ttatatggcc ggaaacctgc tgaaacgcga agtgacggcg gaagacgtgg
      661 ccgatgcctt tgtctatctc gccaccgcct ccaagaccac ggcggcggtc gtcaccgtgg
      721 acggcggtaa tatcgaggct tcgctccgtt aaactccaca tgtcatgccc ggtctcacgg
      781 atggccggct cggaggccgg ccatgacaag ctgggatttg ggcgctaggc tctctccagg
      841 gccgcaaaaa caggccgaaa ggggagggca tcatgcacgc gcatcacgct ttgtttgcag
      901 tgttcgtctt gggcgccggt ctggcccagg cccagccggt ggccatgccg ccgccgcacg
      961 atcccaacga ttatcccaat ccctatcatg tcgatgaagg ctgggcgaag ctgggccgga
     1021 ccttcggcgg tatctccgcc gtggacatcg accgtgacgg caaaagcgtg tgggtgttcg
     1081 aacgctgcgg caaatccgat gacggctgcg ccaaggataa gaccctcgat ccggtgttga
     1141 agttcgacgc ctcaggcaag ctggtgaaac actggggcgc cggtgagttt ctctatcccc
     1201 acggaatctt catcggccgc gacaaccatg tctggctggt ggagggcaca tcccaaagcg
     1261 gcgtggtggc caatgtgatc cgcgaattta cccaggacgg caagctgctg cgcaccatgg
     1321 gcaaaagcgg caccgcgggc tacgcgaccg accgtttcga cggcgcctcc gatgtgctgg
     1381 tggcgccgga cggcagcatt ttcgtcgccg acggccacag caacaaaacc aataaccgga
     1441 ttctgaaata cgaccgcaag ggcagtttcc tgcacagttg gggcaagttg ggttcaggtc
     1501 cgggcgaatt caattcgccg cacggcttgg cgatggaccg ccaggggcgg ctctatgtcg
     1561 cggaccgttc caacagccgc atccagattt tcgaccagca gggcaagttc ctggccgaat
     1621 ggcggcagtt cggccggccc agcggcctct tcatcaaggg cgacatgctc tatgtcgcgg
     1681 attcgctctc cagcgcgcag aacaatcccg gcttcaagaa cggcatccgc tggggccata
     1741 tcagcgacgg caaggtgatc ggctttatcc cctggggcga atacaacgcc atcgaggccg
     1801 tggcggtgga cgacaaggac aatatctata cgggtttcac caatgtgccg aattttcgga
     1861 gatgggtgaa gaactgaggc acatcacgcc gccacccacg cagtgtcatg gcccgcgaat
     1921 gcgggccacc cagttgggct cggttcgatc ctcaaaagga aaaattgaga ccgttcttct
     1981 aaatcagtgc aaacgtcacc tgggtggccc gcatttgcgg gccatgacag tggtgtggtg
     2041 gttccgtcag tggctcagtt gttaaaccgg aaatgcatca cgtcgccact ctcacggtgt
     2101 catggcccgc cggagtgcgg gccacccagc tgggcgtggc tcggtcttca aaagaaaaac
     2161 tgaggctact cttccaagct agtgcagacg tcacctgggt ggccagcatt tgcgggccat
     2221 gacagcggtg tggcggcccc gcccgaggct cagttgttaa acctaaaatg catcacgtcg
     2281 ccgtcggcga cgacatagtc cttgccttcc agccggaact tgcccgcctc gcgcgcgccg
     2341 gcttcgccct tgcccgcaac atagtcggga taggcgatgg tttcggcgcg gatatagccc
     2401 tgctcgaaat cggtatggat cacgcccgcc gcctgcggcc ccctggagcc tttggtcacg
     2461 gtccaggcgc gggcttcctt cgggccgatg gtgaagaagg tcagcaagcc cagcagatca
     2521 tagccggtac ggatcaggcg gttgaggccg ggctcctcca gcccgatgct ggccaggtaa
     2581 tcgccacgct cttcattggg caattgcgcg atctcttctt cgacccgggc ggaaatcacc
     2641 acactgcggg cgccttcggc cttggccatg gcttcgacct tggccgaaat cgcattgccg
     2701 ctgccggcgg cggcctcctc gacattgcag acatagagaa cgggcttggc cgtcatcagg
     2761 cccaactggc tataggggcc gcgctcgtcc gctgtcagtt cggcgcggcg cgcgggcttg
     2821 ccttcgcgca gcagggtcac cgccttcatc atcagggcca acgcttcctt ggcttccttc
     2881 tcgccgctgt tggccttctt ctccagcggc ttgatgcgct tttccaggct ttccagatca
     2941 gccagcatca gttcggtctc gacgatctcg gcatcggaaa tgggatcgat cttgccttcg
     3001 acatgggtga tgtcgtcatc cacgaaacag cgcagcacgt gcgccaccgc gtccacctcg
     3061 cggatattgg ccagaaactg gttgcccaac ccctcgccct tgctggcgcc gcgcaccagc
     3121 ccggcaatgt cgacaaaggt gatgcgggtg gggatgatct cctgcgatcc ggcgatcttg
     3181 gccaaggttt ccagccgcgg atcgggcacc gccacgtcgc cgacattggg ctcgatggtg
     3241 cagaagggat aattggccgc ctgcgccgcc gccgtctggg tgagggcatt gaacagggtg
     3301 gacttgccga cattgggcag gcccacgatt ccacatttga aacccattac tcggtgtctt
     3361 tcttcttcgg ttttggcggc ggcttgagca gcagcgccac cttgctcatg aatccggcat
     3421 cgtcatcttt cgccagcagc ggcgcggcat cgaccatcgc catcaccaac ggcttcagcc
     3481 agccgatatc gtccttgctg aaattctgca gcacatgacc ggtgaccctg gtcttctcgc
     3541 cgggatggcc gatgcccagc cgtacccggc gataatccgg tcccagagtg gcggtgatgg
     3601 agcgcaagcc gttttgcccg gcatcgccgc cgccggtttt cactttcagc ttgcccgccg
     3661 ccaggtcgat ctcatcatgc accaccacca gcgcttccag cggcagcttg aaaaagcgca
     3721 gcgccgggcc gatcgcgtta cccgataggt tcatgaaggt ctggggtttc agcagatagg
     3781 tcttgcggcc cccaagcgtg ccttccgaca acaggccgtc gaacttggcc ttccagggac
     3841 cgaatttgta atgggcgtgc aattcgtcca cgacgatgaa gccggcattg tgccggttct
     3901 tggcatactg ggtacccgga ttgccaagtc ccgcgataag gagcggcgtc tccatgccgc
     3961 cccctttggc gcgggattac ttcttggccg gagccggctt ggcaccggcg gcaggcttgg
     4021 cgccagcagc aggcgcggcg gcgccagcgg cgggcgcggc agcgccggcg gtaggcgcgg
     4081 cgccttcggc gggcgcgact tcgaccacag gtgcggcggc ggcggcggca gcagcgcgct
     4141 gctcttcgat cacgctggtg ggcgcgacga tggagcagac ggtgaagtcg cggccacgga
     4201 tcaccggctt cacgcctgac ggcagcgcga ggctgttgat gtggatggtc tcattgatgt
     4261 ccagcgcgga gacatcgact tcaatcgtgt tggggatggc gtcggccggg cagatcaggc
     4321 cgatggaatg gcgcacgatg ttcagcacgc cgcccttctt caggccgggc gacacgtcct
     4381 ggccgttgaa atgcacggga atttccagcc gcacggtggc gccttcggcc aggcgcatga
//
LOCUS       DATMDK010000403         2445 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_3172935,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000403 DATMDK010000000
VERSION     DATMDK010000403.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2445)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2445)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2445
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3172935"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..446)
                     /locus_tag="VNN98_07765"
     CDS             complement(<1..446)
                     /locus_tag="VNN98_07765"
                     /inference="COORDINATES: protein motif:HMM:NF024991.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2817 domain-containing protein"
                     /protein_id="HWM62033.1"
                     /translation="MPPTSESPGTEGPKPQKDYRAARRAFIAACEAAGVDTVARLHPA
                     KGPDGKPLFMDCAALGPRRAPKAMLVVAEDGAGSAIQIELLRGEIALPLGAKLVLIGD
                     VDQLPSVGPGQVLADLIASGIAPVVRLTQLYRRTPRSLITVNAHRVR"
     gene            464..1246
                     /locus_tag="VNN98_07770"
     CDS             464..1246
                     /locus_tag="VNN98_07770"
                     /inference="COORDINATES: protein motif:HMM:NF013586.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008237 - metallopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0016805 - dipeptidase activity [Evidence
                     IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M15 family metallopeptidase"
                     /protein_id="HWM62034.1"
                     /translation="MTAHRPLQEFRIRPIGDQAPARLRRKDFRSRIAILRDNELFGES
                     VMEARDSGLAGENFYATDRNPPYWKKVDGATDKLWLRRTVAEKLVRVNARAAGAGLEL
                     FVFDAWRPREVQAYFHDVWMPRELQRRDPALSGAALTEEVERYWAAPSDSAASPAPHA
                     TAAAVDLTLRWKKGDPLWMGSLFDDVTALANRDRFENLDPGNFSFSDQEARANRRLLH
                     WLMAEEGFAGHPDEWWHFSWGDQMWAALSGAPAAHYGLAIIP"
     gene            complement(1307..>2445)
                     /locus_tag="VNN98_07775"
     CDS             complement(1307..>2445)
                     /locus_tag="VNN98_07775"
                     /EC_number="4.6.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012437.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009975 - cyclase activity [Evidence IEA];
                     GO_function: GO:0016849 - phosphorus-oxygen lyase activity
                     [Evidence IEA];
                     GO_function: GO:0032555 - purine ribonucleotide binding
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="adenylate/guanylate cyclase domain-containing
                     protein"
                     /protein_id="HWM62035.1"
                     /translation="EALVLAALGTAMITLLRFGLGWSAALVMAGALLLGLLSWYLYTA
                     QNLLLDAATPALFLALAFVAGAMAWIQDLRLAYAGLRMAFSDSLPRATIEKIARRPHL
                     LKLEGETRTVTYLVCGVRGLTGLAADFKNDAAGFTSLMQRALTPLIDQALAHGGTIDR
                     LTADGFAAFWNAPLDDTDHALHACEAANGMAIMSSRVTEALAQQGHGEDPPPLVAIGV
                     GIATGSVIAGGFGGYGRMGYSVHGDAVALAQRLQALSHHYGPALIVSDETRRQAERGF
                     AFLEIDTIAMGAKASPTTLYAILGNPVAKASPKFRALTVFHDHIFQAIRKQHWQMARE
                     LIAQCRRLSGASQKMYDLHLARIAYYEKHPPGENWDGAFRPILE"
BASE COUNT          433 a          789 c          813 g          410 t
ORIGIN      
        1 cggacccggt gggcgttgac ggtgatgagg ctccgcggcg tccggcggta gagttgcgtc
       61 aggcgcacca ccggggcgat gcccgaggcg atcaagtcgg ccaggacttg gcccgggcca
      121 acgctgggca gttgatcgac atcgccgatg agcaccagct tggcgcccag cggcagcgcg
      181 atttcgccgc gcagcagctc gatctggatg gccgagcctg ccccatcctc agccaccacc
      241 agcatcgcct tgggcgcgcg gcgcggcccc aaggcggcac agtccatgaa cagcggcttg
      301 ccgtccggtc ccttcgcggg atgcaaccgc gccaccgtgt ccacacccgc cgcctcgcaa
      361 gcggcgatga aggcgcggcg cgcggcgcga tagtcctttt gcggtttggg gccttcggtg
      421 ccgggacttt cggaagtggg gggcatcatc ctagtctagc gccatgacgg cgcatcgccc
      481 actgcaagaa ttcagaatcc gtcctatcgg cgatcaggcg cctgcgcggc tgcggcgcaa
      541 ggattttcgc agccgcatcg ccatcctgcg cgacaatgaa ctgttcggcg aaagcgtgat
      601 ggaagcgcgc gatagcggcc ttgcgggcga gaatttctat gccacggaca ggaacccgcc
      661 ttattggaaa aaggtggacg gcgccacgga caaattgtgg ttgcgccgca cggtggccga
      721 aaagctggtg cgggtgaatg cgcgcgccgc cggggcgggg ctggaacttt ttgtatttga
      781 tgcctggcgt ccgcgcgagg tgcaggccta tttccacgat gtgtggatgc cgcgcgaact
      841 gcagcgccgc gatccggcgt taagcggtgc ggcgctgacc gaggaagtgg aacgctattg
      901 ggcggcacca tcggacagcg cggcctcgcc cgccccccat gccaccgccg cggcggtgga
      961 cttgaccttg cgctggaaga agggcgatcc gctgtggatg ggctcgctgt ttgacgatgt
     1021 cacggccctg gccaaccgcg accgttttga aaatcttgat cccggcaatt tttctttctc
     1081 cgatcaggaa gcgcgcgcca accgccgctt gctgcattgg ctgatggcgg aagaaggctt
     1141 tgccggccac cccgacgaat ggtggcattt ttcctggggc gaccagatgt gggcggcgct
     1201 gagcggggcg ccggccgcgc attatgggct ggcgattatt ccctagctct caatgtcatg
     1261 gcccgcactc cggcgggcca tcacaattga gtgtgtgtcg cacacgctat tcaagaatcg
     1321 gcctaaaagc cccgtcccaa ttttctcccg gcggatgctt ctcgtaatag gcgatgcgcg
     1381 ccagatgcag gtcgtacatt ttctggctgg cccccgacag gcggcggcat tgcgcgatca
     1441 actcgcgcgc catctgccaa tgctgtttgc ggatcgcctg gaaaatatga tcgtggaaca
     1501 cggtgagggc gcggaacttg ggcgaagcct tcgccaccgg attacccaga atggcataca
     1561 gagtggtggg cgaggctttc gcccccatcg cgatagtatc gatttccagg aaggcgaagc
     1621 cgcgctcggc ctggcgccgg gtctcatccg acacgatcag cgccgggcca tagtgatgcg
     1681 acagcgcctg gaggcgctgc gccaaagcca ccgcatcgcc atggacgctg taacccatgc
     1741 ggccatagcc gccaaagccg cccgcgatca ccgatccggt ggcgatgccg acaccgatcg
     1801 ccaccagcgg cggcgggtct tcgccgtgcc cttgctgcgc caatgcctca gtcacgcgcg
     1861 acgacatgat cgccatgccg ttggccgcct cgcaggcgtg caaggcatgg tcggtatcgt
     1921 ccagcggcgc gttccagaag gcggcaaagc cgtcggcggt cagccggtcg atggtgccgc
     1981 catgcgccag cgcctggtcg atcagcggtg tcagggcgcg ctgcatcagg ctggtgaagc
     2041 ccgccgcgtc attcttgaaa tccgccgcca gcccggtcag cccgcgcacc ccgcacacca
     2101 gataggtgac ggtgcgggtt tcgccttcca gtttcagcag atgcgggcgg cgggcgattt
     2161 tctcgatggt ggcgcgcggc agggagtccg aaaaagccat gcgcaatccg gcataggcca
     2221 gccgcagatc ctgtatccag gccatcgcgc cggcaacgaa ggccagggcc agaaacagcg
     2281 ccggggtcgc ggcatcgagc agcaaattct gggcggtgta gagataccag gagagcagtc
     2341 ccagcagcag cgcacccgcc atcaccagcg ccgcggacca gcccaggccg aagcgcagca
     2401 gagtgatcat tgccgtcccc agcgccgcca ggacaagggc ctcca
//
LOCUS       DATMDK010000404         2107 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2949152,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000404 DATMDK010000000
VERSION     DATMDK010000404.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2107)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2107)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2107
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2949152"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..779
                     /locus_tag="VNN98_07780"
     CDS             <1..779
                     /locus_tag="VNN98_07780"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HWM62036.1"
                     /translation="KLTDDSLIYATYSNGYKAAGLNLDAAVPVAGLILQPEQTDNYEV
                     GIKQGLLDNRLFVKADLYWTELSGLQANYYPPDGSKSYLTNAGNVRARGAEVEATYTV
                     DDHFSFGVNGAFNEAQYSSYPAAPCPIGVTGLCNLTGKPVYEAPKWVGNISASYGFDY
                     DAQTRPYVTVLYSYTSRYNGTIDDSPNTQIPGYSLVNLRAGASLASGKYDVVVWANNL
                     LDQRYLTSTALASVPGASSWGITGQPGAPRLIGATFRANL"
     gene            838..1311
                     /locus_tag="VNN98_07785"
     CDS             838..1311
                     /locus_tag="VNN98_07785"
                     /inference="COORDINATES: protein motif:HMM:TIGR00738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Rrf2 family transcriptional regulator"
                     /protein_id="HWM62037.1"
                     /translation="MLSQKAKYAIKALLVLARAQDKNLLLMQARDISTEQNIPKKFLD
                     LIFFELRRHGLVQSTRGREGGYMLARPAAEISIAAIVRAVDGALAPLPCASVKFYRRC
                     SDCDNEKTCEVRRLMREVHDAASAILDNTSLAEAASFNPRSPRGFKRPARKAVTS"
     gene            1696..>2107
                     /locus_tag="VNN98_07790"
     CDS             1696..>2107
                     /locus_tag="VNN98_07790"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM62038.1"
                     /translation="MMGFDQIVSPLGTGTFLRDYWLKSFVHIPGKAGRFTDLVTWAEL
                     NAILEQHRLVPPRLKLFKDGQAIDPAHYLTSAMFGVPRLDAGGLALCLAQGASLILDD
                     AQELAPRVQDLMQAFQDVLHTDTFTNLYAGWHSQK"
BASE COUNT          432 a          708 c          618 g          349 t
ORIGIN      
        1 ataagctgac cgacgacagc ctgatctatg ccacctattc caacggctat aaggcggcgg
       61 gcctcaatct cgacgcggcg gtgcccgtag cggggctgat cctgcagccg gaacagaccg
      121 ataattacga ggtgggcatc aagcagggcc tgctggacaa tcgcctgttc gtcaaagccg
      181 acctctactg gaccgaactg tccgggctgc aggccaacta ttatccgccg gacgggtcga
      241 aatcctatct caccaatgcc ggcaatgtgc gggcacgggg cgcggaagtg gaagccacct
      301 ataccgtgga cgatcatttc agcttcgggg tcaatggtgc cttcaacgaa gcgcaatatt
      361 cctcatatcc cgccgcgccc tgcccgatcg gcgtcaccgg cctttgcaat ctgaccggca
      421 agcccgtcta cgaagcgccg aaatgggtgg gcaatatcag cgccagttat ggcttcgact
      481 atgacgccca gacccgtccc tatgtaacgg tcctgtattc ctacacctcg cgctacaacg
      541 gcacgatcga cgactcgccc aacacccaga tccccggcta cagcctggtc aatctgcggg
      601 ccggcgcctc gctggccagc ggcaaatacg atgtcgtggt gtgggcgaac aacctgctgg
      661 accagcgcta cctgacctcg acggccttgg cctcggtgcc cggggcttcg tcctggggca
      721 tcaccgggca gccgggggcg ccgcgcctga tcggggcgac ctttagggcc aatctctgaa
      781 catcttgcac cggcccggta cagaccctaa atcagtgggg gatttgccgg gccgttcatg
      841 ctgtcgcaaa aggcgaaata cgcaatcaag gcgctgctgg tgctggcgcg ggcgcaggac
      901 aagaacctgc tgctgatgca ggcgcgcgat atctcgaccg aacagaacat tcccaagaaa
      961 ttcctggacc tgattttctt tgagctgcgc cgtcatgggc tggtgcagag cacgcgcgga
     1021 cgcgagggcg gctatatgct ggcccgcccc gccgcggaaa tctccatcgc cgccatcgtg
     1081 cgcgccgtgg acggcgccct ggcgccgctg ccctgcgcca gcgtgaaatt ctatcgccgc
     1141 tgttcggact gcgacaacga gaagacctgc gaggtgcgcc gcctgatgcg cgaggtgcac
     1201 gatgcggcct cggccatcct ggacaacacc tcgctggccg aagccgcatc attcaatccg
     1261 cggtccccgc gcggcttcaa acgccccgcc cgaaaagcgg taacgtcctg aataacaagg
     1321 cctaggcgaa ccggcgcgct ggcggtagag taacgcccac gcgttcccaa gacgaaagga
     1381 ctatcggtgg ccaagaaacc cgcaaaatcg tctcccggca aaaccgccaa accagtcagt
     1441 gcggccaagg caaaaacacc ggccaaaccg gcccccgcaa aagccgccgc gccggtggcg
     1501 tcagaaaaac ccgcagccgc ggacgcgccg gtcaaagcaa agctgccgcc ggtcccgccg
     1561 cggccggttc ccccgcatca gcaattcctg tccaagagcc ccaaactcca gcacatgacc
     1621 aaaggacgga ttttccggca ccagggccgc taaccgccta gcggcaagcc aagcgcaaga
     1681 agggggcggc agatcgtgat gggtttcgat cagatcgttt cgcccctggg caccggcacc
     1741 tttctgcggg actattggct caagagcttc gtccacatcc ccggcaaagc cggccgcttc
     1801 acggacctgg tgacctgggc cgagctcaac gccatccttg agcagcatcg cctggtgccg
     1861 ccgcgcctga agctgttcaa ggacggccag gccatcgacc cggcgcacta tctcacatct
     1921 gccatgtttg gcgtaccgcg cctggacgcg ggcgggttgg cactttgcct cgcccaaggg
     1981 gcaagtctga ttttggacga cgcccaggaa ctggcgcctc gggtgcaaga cctgatgcaa
     2041 gcctttcaag acgtgttgca taccgacacc ttcaccaacc tctatgccgg atggcattcc
     2101 cagaagg
//
LOCUS       DATMDK010000405         2374 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1340095,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000405 DATMDK010000000
VERSION     DATMDK010000405.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2374)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2374)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2374
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1340095"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..434
                     /locus_tag="VNN98_07795"
     CDS             <1..434
                     /locus_tag="VNN98_07795"
                     /inference="COORDINATES: protein motif:HMM:NF025214.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM62039.1"
                     /translation="ARLVFAPRTASAAHLARHRLADLFVDTLPYNAHTTASDALWAGL
                     PLLTCMGALFDGRVAASLLQTIGLPELVTRSMEDYEALALALARDPARLAALRARLAA
                     NRLSSPLYDTDRFRASLEAAYLHMMEILREGRAPASFTVPA"
     gene            490..1251
                     /locus_tag="VNN98_07800"
     CDS             490..1251
                     /locus_tag="VNN98_07800"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM62040.1"
                     /translation="MRYLWWFLVPACAALTVPAQARPRDDALSGAFRCAAIADSRQWL
                     DCYYGAAQPVRATLGLAPALAGQIKLAAVPPGGGAPRDEGVRDDVMTGAAGCNRVAGD
                     RPWLDCYYAAAAPMRGQLGLTVPPQTALRPAATPAPQLATVLPSPPRATVPSGPPPMP
                     RNTGLLNGVFNDIKPIVHNMPMQSYSLDRKGAFTITLADGEVWTQSAEDEVYHPAHWR
                     EAGPGTLVTISPDALHTFTMTVSGEERIYKVKRVR"
     gene            complement(1431..>2374)
                     /locus_tag="VNN98_07805"
     CDS             complement(1431..>2374)
                     /locus_tag="VNN98_07805"
                     /EC_number="4.1.3.3"
                     /EC_number="4.2.1.41"
                     /EC_number="4.3.3.7"
                     /inference="COORDINATES: protein motif:HMM:NF012904.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009436 - glyoxylate catabolic process
                     [Evidence IEA];
                     GO_process: GO:0071704 - organic substance metabolic
                     process [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="dihydrodipicolinate synthase family protein"
                     /protein_id="HWM62041.1"
                     /translation="EGYPMKLDHTANGVYSIAPTPFQEDGGIDWNSVDRMTDFYFEAG
                     CNGFTILGVLGEAPKLDAEEALALAARVIKRAGGKPIIVGVSAPGFAAMRSLSRKVME
                     MGAAGVMIAPGAGLKTDDQITAYFRNAVEAIGSDIPWVLQDYPHSTGVVMSNGVVRKV
                     VMENPSLAILKHEDWPGLDKITTLRGWEKDGSMRKISILVGNNGLFLDFELDRGVDGA
                     NTGYAFPDMLVETVKLSKEGKRDAAHDLFDAHLPLLRYDHQPGVGLAVRKYVLMRRGI
                     LGTAAMRKPAPAFTAETRAEVDYLLARLARHDPRAKV"
BASE COUNT          366 a          793 c          758 g          457 t
ORIGIN      
        1 ccgcgcggct ggtgttcgcg ccccgcactg cgtcggcggc gcatctggcg cgacaccggc
       61 tggcggacct gtttgtcgac acgctgccct acaatgccca taccaccgcc agcgatgcgc
      121 tatgggcagg gcttccgctt ctaacctgta tgggcgctct gttcgacgga agggtggcgg
      181 caagcctgct gcagaccatc ggcctgccgg aactggtgac ccgcagcatg gaggattacg
      241 aagcgctggc attggcgttg gcgcgggatc cggcgcggct ggcggcgttg cgcgcgcgcc
      301 tggcggcgaa ccgcctttcc agcccgcttt acgatacgga ccggttccgc gcctcgctcg
      361 aggcggccta tctgcacatg atggagattt tgcgcgaggg gcgtgcgccg gcaagcttta
      421 ccgtgccggc ctgacgtggt tgctctggca gcgtgttttt gtttcaatcg gtgaataagg
      481 ggaaagcgca tgcgctattt gtggtggttt ttggtgccgg cctgcgccgc cttgacggtg
      541 ccggcccagg cgcgtccccg cgacgatgcc ttgtccggcg cttttcgctg cgccgccatc
      601 gctgactctc gccaatggct ggattgctat tacggcgccg cccagccggt gcgtgccaca
      661 ctgggtttgg cccccgcgct ggcgggccag atcaagcttg ccgctgtgcc gcctggcggc
      721 ggtgcgccgc gcgatgaagg cgtgcgcgat gatgtgatga caggcgcggc cggctgcaac
      781 cgggtcgccg gcgaccgccc ctggctggac tgctattacg ccgccgccgc gccgatgcgg
      841 gggcagctgg gtcttaccgt gccgccgcaa acagctctac gccccgcggc cacaccggcg
      901 ccccagctgg ctactgtgct gccgtcaccc ccgcgggcga ctgtgccctc aggcccgccg
      961 ccgatgccgc gcaacaccgg gttgctcaac ggtgtgttca acgacatcaa accgatcgtc
     1021 cacaacatgc cgatgcaatc ctacagcctg gaccgcaagg gcgctttcac catcaccctg
     1081 gcggatggcg aggtctggac ccaatcggcg gaagacgagg tttatcatcc tgcccattgg
     1141 cgcgaggcgg gcccgggtac cctggttacg atctcgccgg acgcgctgca caccttcacc
     1201 atgacggtgt cgggcgaaga gcgcatctac aaggtcaagc gcgtccgctg acacttttta
     1261 ttggccccca tctgtcgcaa ctcgggtttg cgttccgcaa acacctcgtt gtgacgttcg
     1321 cgaggctggc cgccccgctc actcccccgc tcgtcgcttc gctcgcgggg gaagaaagct
     1381 ggcacgtgtt gatggtcgcg ccgcgatgtg cggcgctcgg gattcgtctt ttagaccttt
     1441 gcgcgcggat cgtgcctggc cagccgggcc agaaggtaat ccacctcggc gcgggtttcg
     1501 gccgtgaagg ccggcgcggg cttgcgcatc gccgcggtgc ccaggatacc gcgccgcatc
     1561 aacacatatt tgcgcaccgc caggcccacg ccgggttgat gatcatagcg cagcagcggc
     1621 agatgggcgt cgaacaggtc atgggcggca tcgcgcttgc cttccttgct cagtttcacg
     1681 gtctccacca gcatatcggg aaaggcatag ccggtattgg cgccgtccac gccccggtcc
     1741 agctcgaaat ccaggaacag gccattgttg ccgaccagga tggaaatttt gcgcatcgag
     1801 ccgtcttttt cccagccgcg cagggtggtg atcttgtcca gccccggcca gtcttcatgc
     1861 ttcaatatcg ccagcgaggg attttccatc accactttgc gcaccacgcc gttggacatg
     1921 acgacgccgg tggagtgggg atagtcctgc aacacccagg gaatatcgct gccgatggct
     1981 tccaccgcat tgcggaaata ggcggtgatc tggtcgtcgg tcttcaggcc cgcgcctggc
     2041 gcgatcatta cccctgcggc ccccatctcc atcaccttgc gcgacagcga ccgcatcgcg
     2101 gcgaagccgg gcgccgatac cccgacgata atcggcttgc cgccggcgcg cttgatcacc
     2161 cgcgcggcca gcgccagggc ttcctcggca tccagcttgg gggcttcgcc cagcacgccc
     2221 aatatggtga agccgttgca tccggcttcg aaatagaagt cggtcatgcg gtccacggaa
     2281 ttccagtcga tgccgccatc ctcctggaac ggcgtcggag cgatggagta aaccccgttg
     2341 gcggtatggt cgagcttcat gggatatcct tctt
//
LOCUS       DATMDK010000406         7638 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1567592,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000406 DATMDK010000000
VERSION     DATMDK010000406.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 7638)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7638)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7638
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1567592"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1080)
                     /locus_tag="VNN98_07810"
     CDS             complement(<1..1080)
                     /locus_tag="VNN98_07810"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: protein motif:HMM:NF013827.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rhomboid family intramembrane serine protease"
                     /protein_id="HWM62042.1"
                     /translation="MARVRAATAPAVTVAPPGVIGRILARIPWFTLTLSAVLTARFLA
                     ELRATTDSIAPNAPGHFTLLAMGALDRSQVIGHGEWWRLFTATTLHGSPTHLIGNLVT
                     FLTVGFLLEPMIGIGWFALIYFSGGFAGAVASMMLNSADALSVGASGAIMATLAGLFT
                     LSFHAGAPRPGLMRRVAGGSLFPALLPAVAHGGTVVDVNAHLGGCLAGAALGFVMLIA
                     WNDEEEKVPGRFIAAVIAGFWVAMTAWAFAVSGQTYAQYARPGLDYIPPEKMPADVEA
                     MKADSFALVETYPKDPRAHLFRGLSLLEQRDAADAEPYFRDAARLGPASPVMTREFQD
                     WNLALLALTVQVQHRDEEAKTIVAPL"
     gene            complement(1255..1890)
                     /locus_tag="VNN98_07815"
     CDS             complement(1255..1890)
                     /locus_tag="VNN98_07815"
                     /EC_number="1.15.1.1"
                     /inference="COORDINATES: protein motif:HMM:NF014796.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004784 - superoxide dismutase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="superoxide dismutase"
                     /protein_id="HWM62043.1"
                     /translation="MSTPFKLAPLPWNEDALAPTISANTIAFHYHKHHQSYVDTLNKL
                     VAGTKYADLKLEDIVQKTAGAGEAKEKQIFNNAAQVWNHDFYWRSLTQSKTEAGGQLD
                     SAIVAAFGDKDTLIAQLAEAGKTQFGSGWAWLVSKGGKLSIEKTPNAETPMAKGVNCL
                     LAMDVWEHAYYLDYQNARPKYLEAVLGKILNWDFAAENLTKEDHAVRAAAE"
     gene            2124..2333
                     /locus_tag="VNN98_07820"
     CDS             2124..2333
                     /locus_tag="VNN98_07820"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM62044.1"
                     /translation="MPAYEICYLDEAGGLTYKFSANCDDDQRAKILAHAMKLPSAKKL
                     EVWSGEMLIYTRPSAVLERQLLRAG"
     gene            complement(2433..3836)
                     /locus_tag="VNN98_07825"
     CDS             complement(2433..3836)
                     /locus_tag="VNN98_07825"
                     /inference="COORDINATES: protein motif:HMM:NF004767.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase"
                     /protein_id="HWM62045.1"
                     /translation="MSTPNTTLSNTALSNTQARDMASLLHPFTNLTLLRQTGPLVVER
                     GAGVFVYGSDGKDYLEAMGGLWCTALGWGEEELVQAAAEQMRKLSFAHIFGGKSHEPG
                     IALAEKLKEMAPMPVGKTFFANSGSEANDTQIKLMWYAANARGETGRKKIIARTKAYH
                     GVTLASASLTGLGAFHKSFDLPFDFTVRVECPHYYRGGRDGESEEQYSARLAADLDAT
                     IQREGPDTIAAMFVEAVMGAGGAMVPPRGYFEAITAVLDKYGIRLVDDEVICGFGRTG
                     NAFGCQTYNYQPDSMSLAKALSSAYVPISAVLLSPELVEIIEEEAVRNGGLWHAFTYS
                     AHPVAAAVALKTLEIYQRRDTFGHVRKVAPVFLQRLKALAEHPLVGEADGVGLIGAVE
                     LVADKKSKRNFEAAKGVGAKCGQFCQDEGVMVRALLNDRIALCPPLVISEAEVGELFD
                     RLTRGLNKTLDWVRREG"
     gene            3915..4679
                     /locus_tag="VNN98_07830"
     CDS             3915..4679
                     /locus_tag="VNN98_07830"
                     /inference="COORDINATES: protein motif:HMM:NF019032.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1499 domain-containing protein"
                     /protein_id="HWM62046.1"
                     /translation="MRFQHFAARGALASLTLAVLTGMAAAAGVRLGLLTDKGGRTLMI
                     PATALGLAALILALLWLRSALARNEGAGKRLGLIALVGSLVFLYPPLSYVYYGFTALP
                     IHDVTTDPEDPPQFVALAKIQPANSRVFDGTSKISYKGEMVPIAYAFHDKFYLTLAKP
                     HVGLLISPQKAYWRAHEAVQKLGWTIVDASEKDLRIEATDKSLWFGRISDIVIRVRQA
                     GSIGVRVDVRSESRSGTIDHGRNVARLKAFFSQFKF"
     gene            complement(4669..5547)
                     /locus_tag="VNN98_07835"
     CDS             complement(4669..5547)
                     /locus_tag="VNN98_07835"
                     /inference="COORDINATES: protein motif:HMM:NF012955.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HWM62047.1"
                     /translation="MNFDRSLDVAPGAEIRLSPLVSRLLAPNPGPFTFKGTGVHILGA
                     GSQVAVIDPGPALPDHIDALKRALGPRQVSHILVTHTHRDHSPAAAALKAWSGAKTYA
                     LRGAARPSVGEGMADEAHDHDFVPDVAVTDGTLIDGDGFRLECVATPGHTANHMCYAL
                     VQEKALFSGDHVMGWSTSVIAPPDGDMTDYLASLEKLAARDDEIFYPTHGSPIADPQS
                     WLDQLIAHRRMREAQILAALAGGGATVAELVERLYPGIESALRPAAAQQIAAHLHHLQ
                     ARGQAVAAGGRWTVRI"
     gene            5670..6815
                     /locus_tag="VNN98_07840"
     CDS             5670..6815
                     /locus_tag="VNN98_07840"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM62048.1"
                     /translation="MSTDRSVRFLSALGGASTSRVLNLFRIAADNADNAEHTDKPLFL
                     SPIINKAFLLKHRTRGDETYLFASPRAVATKIIIPFDSADLRAGGRSLFVDQRGYAET
                     LREAGNYNPDAFERDLTVLRLLNAVPSLDPFLLREHLRNNKIEVSPSYFAISEGDQAR
                     MHSFVTREMSQLVSLAGGGGSDASSNRLVTAMLSNEIDEKLEPLRLTLDLTGNDFREG
                     VFSWRGFLYYKWSMGKFWPDVMGVLREINSIRPQRGLTPEQKVFLTGARRNIIEMVRD
                     SGNHVNKTLAVYDSSFQDLVANQTPKTFRDFLLSAPHMFLELGEKLGAISHIVSFWRY
                     RFPVGGPSNIDAEELAAIFQDFSSGFGEKIKGDNPLIVKPMVIDATA"
     gene            6926..7555
                     /locus_tag="VNN98_07845"
     CDS             6926..7555
                     /locus_tag="VNN98_07845"
                     /inference="COORDINATES: protein motif:HMM:NF016269.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid-binding SYLF domain-containing protein"
                     /protein_id="HWM62049.1"
                     /translation="MFKSLTKLAVATAIAAACFALPAQAESDKAELLRHANQTVNHLR
                     SDPAFGTARTMLQGAEAVYIVPKLVKGGFIFGAEGGDGVLLHRTGHGWSTPRFYGMGS
                     ASFGLQIGLQQAELVFIINSRRALRGIEKGELKLGAGAGITVVTLSGGAEGATTAHGG
                     DIVVWTSGTGAYAGLTFNGTVIKQDKDENAVPATGPEAQALRRNLANVW"
BASE COUNT         1410 a         2496 c         2312 g         1420 t
ORIGIN      
        1 gagcggcgcg acgatggttt tggcttcctc gtcgcggtgt tgcacctgca cggtcagcgc
       61 cagcagcgcc aggttccagt cctgaaattc gcgcgtcatc accggactgg ccgggcccaa
      121 ccgcgcggca tcgcggaaat agggctcggc atcggccgca tcgcgctgct ccagcagaga
      181 gaggccgcga aacagatggg cgcgggggtc cttgggatag gtctccacca gcgcgaaact
      241 atcagccttc atcgcctcga catccgcagg catcttctcc ggcggaatgt aatccagacc
      301 tggccgtgca tattgcgcat aggtctggcc ggaaaccgcg aaagcccagg ccgtcattgc
      361 cacccagaaa ccggcgataa cggcggcgat gaaccggccg ggcaccttct cttcctcgtc
      421 gttccaggcg atcagcatga cgaaccccag cgccgccccg gccaggcagc cgcccagatg
      481 cgcgttgacg tcaaccacag tgccgccatg cgccaccgcc ggcagcagcg cgggaaacag
      541 cgaaccgccc gccacccgcc gcatcagccc gggccgcggg gcgccggcat ggaagctgag
      601 ggtgaacagc cccgccaggg tggccatgat tgcgcctgac gcgccgaccg atagcgcgtc
      661 ggcgctgttc agcatcatcg aggccacagc gccggcaaag ccgccgctga aataaatcaa
      721 ggcgaaccag ccgatgccga tcatcggctc cagcaaaaag cccaccgtga ggaaagtaac
      781 gagattgccg atcaggtggg tgggcgaccc gtgcagagtg gtggcggtga acagccgcca
      841 ccattcgcca tggccgatga cctggctgcg gtccaaagcg cccatcgcca gcagggtgaa
      901 atggccgggg gcattgggcg cgatggaatc ggtcgtggcc cgcaattcgg ccagaaaccg
      961 cgccgtcagg acggcgctga gcgtcaaggt gaaccaggga atgcgcgcga ggattcggcc
     1021 aatgacaccc ggcggcgcta ccgtcacggc tggggccgtc gccgcgcgca cacgcgccac
     1081 cgctaccggc cgggacccgc gttttccgaa tgtcctgctg acggacaaaa tatccccgcg
     1141 ggcctgatgt agctcacaag gatatcccgt cccggctttc cgccaggtaa agagaaagcg
     1201 ttaagagccg gccaacctta ttcagcggcc gcgcagtgtc cctttgggcg atcactactc
     1261 cgcggccgct ctgaccgcat ggtcttcctt ggtcagattt tccgccgcaa agtcccaatt
     1321 caggatcttg cccagcaccg cctcaagata tttgggccgc gcattctggt aatccagata
     1381 ataggcatgc tcccacacat ccatagcgag caggcagttc acccctttgg ccatgggggt
     1441 ttcggcattg ggggtctttt cgatcgaaag cttgccgccc ttgctgacca gccaggccca
     1501 gccggagcca aactgcgtct tgcccgcttc cgccaactgg gcgatcagcg tgtccttgtc
     1561 accgaaggcg gcgacgatgg cactgtccag ctggccgccg gcctcggtct tggattgtgt
     1621 caggctgcgc cagtagaaat catggttcca tacctgggcg gcattgttga agatctgttt
     1681 ttccttggcc tcgcctgcgc cggcggtctt ttgcacgata tcttccagtt tcagatcggc
     1741 atatttggtg ccggccacca gcttgttgag cgtgtccaca taactctggt gatgcttgtg
     1801 gtagtggaag gcgatggtat tggcagaaat tgtgggggcc agggcgtctt cgttccaggg
     1861 cagaggcgca agcttgaagg gtgtagacat gaaaactcct ttaccgatgc aacaacggtt
     1921 tcccgttaac gcatatggtg gccggaaagc tcccggcaag ccgcgccgca aaattccgtg
     1981 ccgaaattcc gcacaaggac aaaggatatt tgccgacaat tcgtgatgtc tgtaacccaa
     2041 ttgtcattcg acattcgcag gcacatcgcg caaaacgtca aacaagcggg gtagatgttc
     2101 gccagaattt ttcggaggtt ctcatgcccg catatgaaat ctgctacctc gatgaggcag
     2161 gcggactcac ctacaaattc tccgccaatt gcgatgacga tcagcgcgca aaaatcctgg
     2221 cccatgccat gaagctgccc agcgccaaga agctggaagt gtggagcggc gagatgttga
     2281 tctacacccg tcccagcgcc gtgctggagc ggcagctgct gcgagcgggg tgaggcacgg
     2341 agcacgtcat ccccggccgc tcgcttgtgc tcgcggcgtt cgtcgctttc gcgggtccac
     2401 tggacccgct cacgcgcttc gcgcgccgct cctcaccctt cgcgccgtac ccagtccagc
     2461 gtcttgttca agccgcgggt caggcggtcg aacagttcgc cgacttccgc ttcgctgatc
     2521 accagcggtg ggcatagcgc gatacggtca ttgagcagcg cccgcaccat cacgccttcg
     2581 tcctggcaga actggccgca tttggcgccg acccctttgg cagcttcaaa attgcgcttg
     2641 ctcttcttgt cggctaccag ctcgaccgcc ccgatcaggc cgacgccgtc ggcctcgccc
     2701 accaggggat gctcggccaa tgccttcagc cgttgcagga agaccggcgc caccttgcgg
     2761 acatgaccga aggtatcgcg gcgctgatag atttccagcg tcttcagcgc cacggcagcg
     2821 gccaccggat gggcgctgta ggtgaaggcg tgccacaacc cgccgttgcg aacggcttct
     2881 tcctcgataa tctccaccag ttcgggcgac agcaacaccg ccgagatcgg cacataggcc
     2941 gatgacagcg ccttggcgag ggacatggag tcgggctggt aattgtaggt ctggcagccg
     3001 aaagcattgc cggtgcggcc gaagccgcag atcacttcat cgtccaccag gcggatgccg
     3061 tatttgtcca gcaccgccgt gatcgcttca aaatagccgc gcggcggcac catcgccccg
     3121 cccgcgccca tcaccgcctc tacgaacatg gcggcaatgg tgtcgggccc ctcgcgctgg
     3181 atcgtggcgt cgagatcggc ggccagccgg gcggaatatt gctcctcgct ctcgccgtcc
     3241 cggccgccgc gatagtaatg cggacattcc acccgcaccg tgaaatcgaa cggcagatcg
     3301 aagcttttgt gaaaggcgcc cagcccggtc aggctggcgc tggccaaggt cacgccgtga
     3361 taggctttgg tgcgggcgat gatcttcttg cgccccgtct cgccgcgcgc gttggcggca
     3421 taccacatca attttatctg cgtgtcattg gcctcagagc ccgaattggc gaagaaggtc
     3481 ttgcccaccg gcatgggcgc catttccttc agcttctcgg ccaaggcgat gcccggctcg
     3541 tggctcttgc cgccgaagat atgcgcgaag gaaagcttgc gcatctgttc agcggcggct
     3601 tgcaccagct cttcctcgcc ccagcccagc gccgtgcacc acagcccgcc catcgcttcc
     3661 agatagtcct tgccgtcgct gccatagacg aagacgcccg cgccgcgctc caccaccagc
     3721 ggtccggttt ggcgcagcag cgtgagattg gtgaaggggt gcagcaggct ggccatgtcg
     3781 cgcgcctggg tgttggacaa agccgtgttg gacaaggtcg tgttgggggt ggacatttcg
     3841 gcactcacta tcgcggcggc gggaaatcta ccttatggtg acgcgaataa aacgcccatc
     3901 tgcggatttc tcccatgcgt ttccaacact tcgccgcgcg cggcgcgctg gccagcctga
     3961 ctttggccgt gctgacgggt atggctgcgg ccgcgggcgt gcgcctgggg ctgctgacgg
     4021 acaagggcgg gcgcaccctg atgatcccgg ccacggcgct ggggctggcg gcgctgatcc
     4081 tggctttgct atggctgcgc tccgccctgg cgcgcaatga aggcgccggc aagcgcctgg
     4141 gactgatcgc gctggttggg tcgctggtct ttctctatcc cccgctctct tacgtctatt
     4201 acggcttcac ggcccttccc atccatgatg tcaccaccga cccggaagac ccgccccagt
     4261 tcgtggcgct ggccaagatt cagcccgcca acagccgcgt cttcgacggc accagcaaga
     4321 tttcctacaa gggcgagatg gtccccatcg cttatgcctt tcatgacaaa ttctatctca
     4381 ccttggccaa gccgcatgtc gggctgctga tctcgccgca aaaggcctat tggcgcgccc
     4441 atgaggcggt gcagaagctg ggctggacca tcgtcgacgc cagcgaaaaa gacttgcgca
     4501 tcgaagccac tgacaaaagc ctgtggttcg ggcgtatttc cgacattgtg atccgggtgc
     4561 gccaggccgg atccatcggc gtgcgggtgg atgtgcgctc cgaaagccgg agcggcacca
     4621 tcgaccatgg ccgcaacgtg gcccggctca aggctttctt cagccaattc aaattctgac
     4681 agtccagcgt ccgcctgcgg cgaccgcctg gccgcgcgcc tgcagatggt ggagatgggc
     4741 tgcgatttgt tgcgccgcgg ccgggcgcag cgcggattcg atgccaggat aaagcctctc
     4801 taccagttcc gccacagtag cgccgccgcc cgccagtgcc gccagaatct gcgcctcgcg
     4861 catgcggcga tgggcgatca actgatcaag ccaggattgg ggatcggcaa tgggcgagcc
     4921 gtgggtggga tagaagattt cgtcatcccg cgccgccaat ttttccaggc tggcgagata
     4981 atcagtcatg tcgccgtcgg gcggcgcgat cacgctggtg gaccagccca tcacatgatc
     5041 gccgctgaac agcgccttct cctgcaccag ggcgtagcac atatggttgg cggtgtggcc
     5101 cggcgtcgcc acacattcca gccggaaacc gtcgccatca atcagcgtac catccgtgac
     5161 cgccacgtcg ggcacaaaat catggtcatg cgcttcgtcc gccataccct cgccaacgga
     5221 gggtcgcgcg gcgccacgca gcgcataagt cttcgcacca ctccaggctt tcaatgcggc
     5281 tgcggcgggt gaatgatcgc ggtgggtgtg ggtgaccagg atatggctga cctggcgcgg
     5341 ccccagcgcg cgcttcaggg cgtcgatatg gtccggcaag gccgggccgg gatcgatcac
     5401 cgcaacctgg gaccccgcgc ccaggatatg gaccccggtg cccttgaagg tgaaaggccc
     5461 tggattgggg gccaacagcc gcgataccag cggcgacagc cgtatctcag ctccgggggc
     5521 cacatccagc gaacggtcga aattcacttt tgttaatcca aaatccggct tggagcttac
     5581 gtcatttcca acggggtaaa gcaatcctta aggcggtacc cgtcatactg acgtcatatt
     5641 gcacgttgct ttcacgccgg ggatttgccg tgtccactga ccgttctgtg cgctttctca
     5701 gcgcgctggg gggcgcctcc accagccggg tgctgaacct gttccgcatc gccgccgaca
     5761 atgcggacaa tgccgaacat accgacaagc cgctgttcct gtcgcccatc atcaataagg
     5821 ccttcctgct caagcaccgc acccgcggcg acgagaccta tctcttcgcc agcccccgcg
     5881 ccgtagcgac caagatcatc atccccttcg atagcgccga cctgcgtgcc ggcggccgct
     5941 cgctgttcgt agaccagcgc ggctatgccg agaccttgcg cgaggcgggc aattacaatc
     6001 ccgatgcctt cgagcgcgac ctgacggtgc tgcggctgtt gaacgcggtg ccgtcgctgg
     6061 accctttcct gctgcgcgaa catctgcgca acaacaagat cgaagtgtcg cccagctatt
     6121 tcgccatttc cgagggcgac caggcgcgca tgcacagttt cgtcacccgg gaaatgtcgc
     6181 agctggtctc gctggcgggc ggcggcggta gcgacgcctc cagcaaccgg ctggtgacgg
     6241 ccatgctgtc caacgagatc gacgaaaaac tggagccgct gcgcctgacc ctggacctga
     6301 ccggcaacga cttccgcgaa ggcgtgttca gctggcgcgg ttttctctat tacaaatggt
     6361 cgatgggaaa attctggccc gacgtgatgg gcgtgctgcg cgagatcaac tccatccgtc
     6421 cgcaacgcgg cctgacgccc gagcagaagg tctttctgac cggcgcccgc cgcaacatca
     6481 tcgagatggt gcgcgacagc ggcaatcatg tgaacaagac cttggcggtc tatgattcct
     6541 cgttccagga tttggtggcg aaccagacgc ccaagacctt ccgcgatttt ctgctgagcg
     6601 cgccccatat gttcctggag ctgggcgaga agctgggcgc catttcccat atcgtcagct
     6661 tctggcgcta ccgtttcccg gtgggcggcc ccagcaacat tgatgccgag gaactggccg
     6721 ccatcttcca ggatttctcc agcggcttcg gcgagaagat caagggcgac aatcccctga
     6781 tcgtcaagcc gatggtgatc gacgccaccg cctagcgttt gattttccgg ttgctggcgc
     6841 cttcgccgcg acgctaaact catgggaact ttctgaccga ggcggcgtta ccagccgcat
     6901 tcattcgacc aaaaagggta ttcccatgtt caaatcattg accaagctgg ccgtggccac
     6961 cgccattgcc gctgcctgtt ttgctcttcc cgcccaggcc gagagcgaca aggccgaact
     7021 gctgcgccac gccaaccaga ccgtgaatca tctgcgcagc gaccccgcct tcggcaccgc
     7081 ccgcaccatg ctgcagggcg ccgaagcggt ctatatcgtg cccaagctgg tcaagggcgg
     7141 cttcatcttc ggcgccgagg gcggcgacgg tgtgttgctg caccgcaccg gccatggctg
     7201 gagcaccccg cgcttctacg gcatgggttc ggcctccttc ggcctgcaga tcggcctgca
     7261 gcaggcggag ctggtcttca tcatcaactc caggcgcgcc ctgcgcggca ttgaaaaagg
     7321 cgaactcaag ctgggcgccg gcgccggcat caccgtcgtc accctgtccg gcggcgcgga
     7381 aggcgccacc accgcccatg gcggcgatat cgtggtctgg acctcgggca caggcgccta
     7441 tgccggcctg accttcaacg gcacggtcat caagcaggac aaggacgaga atgccgtccc
     7501 cgccaccggg ccggaagccc aggcgctgcg ccgcaacctg gccaatgtct ggtaagcaag
     7561 tcggctggca acagcccgta tttggagtaa gctttggggc gcatgggaca acccgtgcgc
     7621 cccaattctt ttatcaga
//
LOCUS       DATMDK010000407         2729 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_177772,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000407 DATMDK010000000
VERSION     DATMDK010000407.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2729)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2729)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2729
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_177772"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..489
                     /locus_tag="VNN98_07850"
     CDS             <1..489
                     /locus_tag="VNN98_07850"
                     /inference="COORDINATES: protein motif:HMM:NF018533.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="zinc finger domain-containing protein"
                     /protein_id="HWM62050.1"
                     /translation="GLMALVNTAKLDEDKLFKGIGAEPLSGDFNTAYLAQRLSGKKTP
                     IKSALLDQRLIAGLGNIYVCEALLRAGISPKRLAGAVKRDRLPPLVAAIKKVLKDAIA
                     AGGSTLRDHAQATGDPGNFQHRFLAYGREGLPCKTAKCPGTVKRIVQSGRSTFYCPKC
                     QS"
     gene            497..1264
                     /locus_tag="VNN98_07855"
     CDS             497..1264
                     /locus_tag="VNN98_07855"
                     /EC_number="4.2.1.17"
                     /inference="COORDINATES: protein motif:HMM:NF004517.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase"
                     /protein_id="HWM62051.1"
                     /translation="MNIKTEVNGSVGIATLNRPEALNALNTALLNELADTLEAWDRGT
                     DVRCMIVTGSERAFAAGADIKEMAPKSYSQMYRENLFGAQFDRLARIKKPVIAAVAGH
                     ALGGGCELALVCDFIIAADTAKFGQPEITLGVMPGLGGSQRLTRIIGKSKAMDLCLTG
                     RTMDAAEAESCGLASRVVPVDMLLAEALKAAQKIAAQSSPAAQMVKEAVNRAYETTLA
                     EGLHFERRLLHAMFATTDQKEGMAAFSEKRKPGFKDA"
     gene            1347..1613
                     /gene="rpsT"
                     /locus_tag="VNN98_07860"
     CDS             1347..1613
                     /gene="rpsT"
                     /locus_tag="VNN98_07860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016291384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000312 - plastid small ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S20"
                     /protein_id="HWM62052.1"
                     /translation="MPNIASSKKRVRTTAKRTAINTSRKTRVRGFIRKVEEAIASGDK
                     AAALAALKAAEPEIMRGVSKGVLHKNTGSRKVSRLSKRVAKLSK"
     gene            2090..2524
                     /locus_tag="VNN98_07865"
     CDS             2090..2524
                     /locus_tag="VNN98_07865"
                     /inference="COORDINATES: protein motif:HMM:NF012790.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HWM62053.1"
                     /translation="MAPPSSLEYAGDISAAQAWERLEADPKAQLVDVRTAAEWNFVGL
                     PDISSLGRQVHCVEWQAFPTGARNPGFVIEAGQALNDKDAPVLLLCRSGARSRAAAIA
                     LTEAGFSQAFNIAGGFEGDTDEESHRGNRNGWKAANLPWRQG"
BASE COUNT          586 a          814 c          843 g          486 t
ORIGIN      
        1 gggctgatgg cgctggtgaa taccgcgaag cttgacgagg acaagctgtt caaaggcatc
       61 ggcgcggagc cgctgtccgg ggatttcaac accgcctatc ttgcccagcg gctttccggc
      121 aagaaaacac cgatcaaatc ggcattgctc gaccagaggc tgatcgccgg cctgggcaac
      181 atctatgtct gcgaggcgct gctgcgcgcc ggcatctcgc ccaagcggct ggccggtgcg
      241 gtcaagcgcg accgcttgcc gccgctggtg gcggcgatca agaaagtgtt gaaggacgcc
      301 atcgcggccg gcggctcgac cctgcgcgac catgcccagg ccaccggcga tcccggcaat
      361 ttccagcatc gtttcctggc ctatggccgc gagggcttgc cctgcaaaac cgccaaatgt
      421 cccgggactg taaaacgcat tgtgcaatcc ggccgttcga ccttctattg tccgaaatgc
      481 caaagctgag gcagtcatga acataaaaac agaagtgaac ggttcggtcg gcatcgccac
      541 cttgaaccgg cccgaggcgc tgaacgcact caacacggcg ctgctcaacg aattggcgga
      601 tacgctggag gcctgggatc gcggcacgga cgtgcgctgc atgatcgtca ccggcagcga
      661 gcgcgccttc gccgccgggg ccgacatcaa ggaaatggca cccaaaagct attcccagat
      721 gtaccgggaa aacctgttcg gggcgcaatt cgatcggctg gcccgcatca aaaagcccgt
      781 catcgcggcg gtggcgggcc atgccttggg cggcggctgc gaactggcgt tggtctgcga
      841 tttcatcatc gcggccgata ccgccaaatt tggccagccg gaaatcacct tgggcgtcat
      901 gcccgggctg ggcggcagcc agcgccttac ccgcatcatc ggcaagtcca aggcgatgga
      961 tctgtgcctc acgggccgca ccatggatgc agcggaagcc gaaagctgcg gcttggcgtc
     1021 tcgtgtggtc cccgtggaca tgctgctggc cgaagcgctg aaggcggccc agaagatcgc
     1081 cgcccagtcc tctcccgccg cccagatggt gaaggaggcg gtcaatcgcg cctatgagac
     1141 gaccttggcc gagggcctgc atttcgagcg gcgcctgctt catgccatgt tcgccaccac
     1201 cgaccagaaa gagggcatgg cggccttttc cgagaagcgc aaacccggct tcaaggacgc
     1261 gtagggctga aaacggagta cttgttgacc taggcggcca gcggggttat acgcgccctc
     1321 ttttcggcag aatccaagga ttttccatgc ctaatatcgc ctcgtccaag aagcgcgtcc
     1381 gcaccaccgc caagcgcacg gccatcaaca cgtcgcgcaa gacgcgcgtg cgcggcttta
     1441 tccgcaaggt cgaggaagcc attgcctccg gcgacaaggc ggccgccctg gctgccctga
     1501 aggcggcgga gccggaaatc atgcgcggcg tctccaaggg cgtgctgcac aagaacaccg
     1561 gctcgcggaa agtgtcgcgc ctgagcaagc gggtcgcaaa actgtcaaaa taacgaaggt
     1621 actggaatcc ttgcggattc aagtccagaa ttgggcccgg ggccaaaacc gggccttttt
     1681 tattgtccgt atgctgagat tcgcaaattg gccacagttc ggcggcgcaa cacggagcaa
     1741 ttgacagcta agtgactgat tcaaaaaagc ttggtctcaa agcatcattt tccgtatacg
     1801 gcccaaccat ttagtccaat tcacaaaagc gaaatttttt tcgaatcagg gcatttgttc
     1861 gcagtttatt cccttgtggg ggcgcgcggc ttggacgtat cttaaccaac ggatggggtg
     1921 agctctgaaa atgccgaagg ctagaccaaa taaaacagaa gtattcggtg gcgatcagaa
     1981 gcttttcggg cacatccgaa agtacagcag cccctaaatt ctttaaatta tgacgctttt
     2041 gtgctgggcg aagaccccgg caccccccga attgtcttta aggcacagca tggctcctcc
     2101 ctcttctctt gaatatgccg gcgacatcag cgctgcccag gcctgggagc ggctggaggc
     2161 ggaccccaag gcccagctag tggacgtacg cacggcggcg gagtggaact ttgtcggcct
     2221 gcccgacatt tcttcgctgg gccgtcaggt gcattgcgtg gaatggcaag ccttcccaac
     2281 cggcgcgcga aatcccggct ttgtgatcga agccggccag gcgctgaacg acaaggatgc
     2341 accggtgctg ctgctctgcc gctccggcgc gcgcagccgc gcggccgcca ttgccctgac
     2401 cgaagcgggc ttcagccagg ccttcaatat cgcgggcggt tttgagggcg acacggacga
     2461 ggaaagtcat cgcggcaatc gcaatggatg gaaggcggcc aatcttccct ggagacaggg
     2521 ctaacaagac gagcatagcc ggacaggaac acctgccgga aaccggacgc gtcagcggac
     2581 ggcaattgaa acaagatagt gaacaaaacg ggtagcgaca tggtgcaaat aggaaaatcg
     2641 attccggact ggcgggcggc atggacggcg gtgcgtgagc gcatgcgccg ggaactgggc
     2701 gatccggtgt tcgacgcctg gatcgggcc
//
LOCUS       DATMDK010000408         5102 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1568990,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000408 DATMDK010000000
VERSION     DATMDK010000408.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 5102)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5102)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5102
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1568990"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..3125
                     /locus_tag="VNN98_07870"
     CDS             <1..3125
                     /locus_tag="VNN98_07870"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: protein motif:HMM:NF004225.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_function: GO:0008408 - 3'-5' exonuclease activity
                     [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="error-prone DNA polymerase"
                     /protein_id="HWM62054.1"
                     /translation="AAIGIADRNSLAGVVRAYEAWTNQAAETRPKLLVGARLVFNDGT
                     PDILAYPADRAGYGNLCRLLSLGKSRAPKGECFLALADLIAYREGLLLIVMPDSSRDE
                     KLADILAALGSDIWLAASMLYTGEDRRRLRTLKKIARETRVPLIAVNDVLYHHQGQRE
                     LQDIVTCIREHVTLETAGRRLQANAERHLKPPEEMARLFRSCSEAIAESLHFAARIHF
                     TLDMLKQNYPHEPVPPGKTADGHLRDLTKAGLKWRYPSGTPFKVARLAVKELRFIAEQ
                     EIAHYFLTVHDIVKYAEGKGILCQGRGSAANSAVCYVMGVTAVDPNTFDVLFERFLSA
                     ERREPPDIDVDFEHERREEVIQHIYQRYGRRRAALTATVICYRARSAIREVGKVFGLT
                     EDVTGSLADTVWGHYGEGLQEHQIRQGDCDPANLAVARAVHFAGSLAGFPRHLSQHVG
                     GFVLTEDFLDTIVPIGPAAMEDRSFIEWDKDDLDTLRIMKVDVLALGMLTCIRKAFRL
                     IDAYSYGPTRPPLNLAAIPQGDPLVYDMLCQADAIGVFQVESRAQMNMLPRLRPREFY
                     DLVVEVAIVRPGPIQGGMVHPYLKRRKEKRDNPDKVFDCPRPGPQHPQNELIPVLEKT
                     LGIPLFQEQAMKLAIVAAKFTGDEANGLRRAMATFRHVGTIGNFERKFIDGMTGRGYD
                     KKFAESCFEQIKGFGSYGFPESHAASFALLVYISAWLKKHHPAAFAAALLNSQPMGFY
                     APAEIVRCAREHGVTVLAPDAAFSDWDSTLERTQTGLALRLGLRQIDGLREDDAHTVM
                     AERGYGYRSFADFTRRTALSKRALVTLAEADALGSFGLDRREGLWAVRRLPDDDPLPL
                     FAPRATPELGAEHIAPLPPMAQSQEVVADYQTLRLSLKGYPTQFLRPLFQAEGIVSCA
                     GLADLPDGAPARVAGVVLVRQRPGEGTAIFITLSDETGVANLVLWESLFPRFRKEAMG
                     ARLLLAEGKVQKSPEGVLHLMVEKLIDRSADLHRLYEDETPLPAPSHSHVKGGHPRNV
                     RVLPASRDFH"
     gene            3222..4808
                     /locus_tag="VNN98_07875"
     CDS             3222..4808
                     /locus_tag="VNN98_07875"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM62055.1"
                     /translation="MAWKRVWTPRHWPEGHLTGFTLMAAALMLATPLWCVWAPAMPDY
                     PAHLASFALIQDGLKGGAGNRIYHLQWGFVPNLASEVLVPLLAHLTGLVAATKLFLTA
                     AIFFWVLGPGAIHRALYGRTGIAPLFGAFFAYNANFTWGFFNYYFSAGLSFLIFAAWI
                     ATDKRNGPDRLAGFMLAITLLYFCHVFAAASLLLMLAGFEVAQNIRTEHHSPAALTKR
                     GIRVVLLYLPAILAFLFLKPHSPGDVSLEFNLADTMLDRFESLIQHAFDDPAYLLPAA
                     LFIGLGLALILRKAQLHPALWGTLALLLLGALFAPEWAMGGWAVHLRLPAVFGAVLFA
                     SAELRMTPPVRATLAGLALAMIAVSAATLTQSWLGYDRHYREFQAALEEVPRGTRLLT
                     VLDGNAIGERPEQPYWHMAEFAIPERGVFTPLLFTTKGQHVVQWNQPYARYAAASAQQ
                     GSPPDVDELDYLARGEMDADAEMREGMPYLNHFQCHFDIAVVVHLDGKRTPVPAMLRL
                     RHAGSFFSFYDVLPDRTCGR"
     gene            4805..>5102
                     /locus_tag="VNN98_07880"
     CDS             4805..>5102
                     /locus_tag="VNN98_07880"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM62056.1"
                     /translation="MTQRLAAAMLWCALIAMALAVLPLLTRNILAIPVLAPLDPNEGW
                     NAAHALAAMTGRALYPPPQSLMVNNYPPLSFYIVGALARLTGDAVIAGRILSLIS"
BASE COUNT          872 a         1669 c         1584 g          977 t
ORIGIN      
        1 atgccgccat cggcatcgcc gaccgcaaca gcctggcggg cgtggtgcgc gcctacgaag
       61 cgtggacaaa ccaggcggca gaaacccgcc ccaaactact ggtcggcgcg cggctggtgt
      121 tcaacgacgg cacgccggac atcctggcat accctgcgga tcgcgccggt tatggcaatc
      181 tctgccggct tctgagtttg ggaaaatcgc gcgcgcccaa aggcgaatgc tttctcgccc
      241 ttgccgatct catcgcctat cgcgagggcc tgctcttgat cgtcatgccg gattcatcac
      301 gggacgaaaa gctggctgac attctggccg cgctgggctc cgacatatgg ctggcggcgt
      361 ccatgctcta taccggcgaa gaccgccgcc gtctgcgaac cctgaagaaa atcgcgcgtg
      421 agacgcgcgt gccgctgatc gctgtcaacg atgtgctgta tcaccatcag ggtcagcgcg
      481 agttacagga cattgtcacc tgcatccgcg agcatgtgac cttggagacg gcgggacggc
      541 ggctgcaggc caatgccgag cgccatttga aaccgccgga agaaatggcg cgcctgttcc
      601 gcagctgctc cgaggcgatt gccgagagtt tgcacttcgc cgcccgcatc cacttcaccc
      661 tggacatgct gaaacagaat tacccccatg agccggtgcc gccgggcaag acggccgacg
      721 gccatttgcg cgacctgacc aaggccgggc ttaaatggcg ctacccgtcc ggtacgccgt
      781 tcaaggtggc gcggctggcg gtcaaggaac tgcgctttat cgccgagcag gagatcgcgc
      841 actatttcct caccgtgcac gacatcgtga aatatgcgga aggcaagggc attctctgcc
      901 aggggcgtgg ctcggccgcc aattccgcgg tctgctatgt gatgggcgtc actgccgtgg
      961 atcccaacac cttcgacgtg ctgttcgagc gctttctcag cgccgagcgc cgcgagcccc
     1021 ccgacatcga cgtggatttc gagcatgagc ggcgcgaaga agtcatccag cacatctatc
     1081 agcgttacgg ccgccgccgc gcggcgctga ctgccactgt catctgttac cgcgcgcgca
     1141 gcgccatccg cgaagtcggc aaggtgttcg gcctgaccga agacgtcacc ggcagcctgg
     1201 ccgacacggt atggggccat tacggcgaag gcctgcaaga gcaccagatt cgccagggcg
     1261 attgcgatcc cgccaatctg gcggtggcgc gggcggttca tttcgccggt tcattggccg
     1321 gctttccccg ccatctgtcc cagcatgtcg gcggctttgt cctgaccgaa gattttctcg
     1381 acaccatcgt gcccatcggc cctgccgcca tggaagaccg cagtttcatt gaatgggaca
     1441 aggacgatct cgataccttg cgcatcatga aggtggatgt gctggcgctg gggatgctga
     1501 cctgcatccg caaagccttc cggctgatcg acgcttacag ctatggcccc acccggccgc
     1561 cactgaacct ggccgccatc ccccagggcg atccgctggt ctacgacatg ctgtgccagg
     1621 ccgacgccat cggcgtgttc caggtggaaa gccgcgccca gatgaacatg ctgccgcgcc
     1681 tgcgcccccg cgaattctac gatctggtgg tggaggtggc gatcgtgcgc cccggcccga
     1741 tccagggcgg catggtgcat ccctatctca agcggcgcaa agagaagcgc gacaatcccg
     1801 ataaggtttt cgactgcccc aggcctggac cgcagcatcc gcaaaacgaa ctgataccgg
     1861 tgctggaaaa aaccttgggc attcccttgt tccaggaaca ggcgatgaag ctggccatcg
     1921 tcgccgccaa attcaccggc gatgaagcca acgggttgcg ccgcgccatg gcgaccttcc
     1981 gccatgtggg aaccatcggc aatttcgaac gcaaattcat cgatggcatg acggggcgcg
     2041 gctatgacaa aaaatttgcg gaaagctgct ttgaacagat caagggcttc ggcagttacg
     2101 gttttcccga aagccatgcc gccagcttcg cactactggt ctacatctcg gcctggctca
     2161 agaaacacca tccggccgcc ttcgcggcgg cgctgctcaa ttcccagccc atgggctttt
     2221 atgcccctgc cgagatcgtg cgctgcgccc gcgagcatgg cgtgaccgtg ctggcgcccg
     2281 atgcggcctt cagtgactgg gactcaacac tggagcggac gcaaaccggc ctggctttgc
     2341 gtctgggctt gcgccagata gacggcttgc gggaagacga cgcccacacc gtgatggcgg
     2401 agcgcggcta tggttatcgg agcttcgccg atttcacgcg ccgcaccgcc ttgtccaagc
     2461 gggcgctggt caccttggcg gaagccgatg ccctcgggag tttcggactg gatcgccgcg
     2521 aaggcttgtg ggcggtgcgc cgcctgccgg acgatgatcc gctgccactg ttcgcacctc
     2581 gggctacacc cgaactaggc gcggagcata tcgcgcccct gccgcccatg gcgcaaagcc
     2641 aggaagtcgt ggcggattac cagacattgc ggctttcctt gaaaggctat cccacccagt
     2701 tcctgcgtcc gctgttccaa gccgaaggca tcgtctcctg cgccgggctg gcggacttgc
     2761 ccgatggcgc gcctgcgcgg gtggcgggcg tggtgctggt gcgccagcgc cccggcgaag
     2821 gcacggcgat ctttatcacc ctgagcgacg aaaccggtgt cgccaatctg gtgctgtggg
     2881 agagcctctt tccccgcttc cgcaaggagg cgatgggtgc gcggttgctg ctggccgaag
     2941 gcaaggtgca aaaaagcccg gaaggggtgc tgcatctgat ggtcgaaaag ctgatcgacc
     3001 gcagcgccga cctgcaccgc ctgtatgaag acgagacccc gctgcccgcg ccgagccact
     3061 ctcatgtcaa aggggggcac ccgcgcaatg tgcgggtact gccggcgtcc agggattttc
     3121 actaatccaa aacggacaaa ttggccgcat ggaatatccg taaccaaagc gaatgctttc
     3181 ccctattatc gcccgcgtgt aacgggggca acgacagccg gatggcttgg aagagggttt
     3241 ggacgccgcg gcattggccg gaaggccatc tgacaggctt caccctgatg gccgccgccc
     3301 tgatgctggc cacgccttta tggtgcgtgt gggcgccggc catgcccgac tatcccgccc
     3361 atctcgccag cttcgccctg atccaggacg gcttaaaggg cggcgccggc aatcgcatct
     3421 atcacctgca atggggcttc gtgcccaacc tggcatcgga agtgctggtg ccgctgctgg
     3481 cgcacctgac cgggctggtg gcggcaacca agctgttcct caccgccgcg attttcttct
     3541 gggttctggg ccccggcgcc attcaccgcg ccctttatgg ccgcaccggt atcgcgccgc
     3601 tgttcggcgc cttcttcgcc tacaacgcca atttcacctg gggctttttc aattactatt
     3661 tttccgccgg gctgagtttt ctcatcttcg ccgcctggat tgccaccgac aagcgcaatg
     3721 gcccggaccg gctggcaggc ttcatgctgg cgatcaccct gctctatttt tgccatgtct
     3781 tcgcggcggc cagcctgctg ttgatgctgg cgggattcga ggtggcgcag aatatccgca
     3841 ccgagcatca cagtcccgcc gccctgacca agcgcggcat tcgcgtcgtg ctgctttatc
     3901 tccctgccat tctcgccttc ctgtttctca agccgcacag cccgggcgat gtcagcctgg
     3961 agttcaacct ggccgacacg atgctggacc gctttgaaag cctgatccag cacgcttttg
     4021 acgatcccgc ttatctgctg cctgccgccc tgttcatcgg gctggggctg gcgctgatct
     4081 tgcgcaaggc gcagctgcat cccgctttgt gggggacctt ggccttgctg ctgctgggcg
     4141 cgctgttcgc gccggaatgg gcgatgggcg gctgggcggt gcatctgcgc ctgcccgcgg
     4201 tgttcggcgc ggtgctgttc gccagcgccg aactgcgcat gacgccaccg gtgcgcgcca
     4261 ctctggcggg gctggcgctg gcgatgattg ccgtcagcgc cgcgacattg acgcaaagct
     4321 ggctgggcta tgaccggcac tatcgcgaat tccaggcggc gctggaggaa gtgccccgcg
     4381 gcacgcgcct gctgaccgtg ctggacggca acgccatcgg cgaacggccg gaacagcctt
     4441 actggcacat ggcggaattc gccataccgg agcgcggcgt gttcaccccg ctgctgttca
     4501 ccaccaaggg ccagcatgtg gtgcaatgga accaacccta tgcgcgctat gccgcagcct
     4561 ccgcacagca aggctcgccc cccgacgtgg acgagctgga ctatctggcg cgcggcgaga
     4621 tggacgcgga tgcggagatg cgcgagggca tgccgtatct caaccacttc caatgccatt
     4681 tcgacatcgc ggtggtggtg catctggacg gcaagcgcac cccggtgccc gccatgctgc
     4741 ggctgcgcca tgccggcagt ttcttttctt tctatgacgt gctgcccgac cggacctgcg
     4801 gacgatgacg cagcgccttg ccgccgcaat gctctggtgc gccttgatcg ccatggcgct
     4861 ggccgtgttg ccgctgctga cgcgcaatat cctggcgatt ccggttctgg cgccgctgga
     4921 ccccaatgag gggtggaacg ccgctcatgc cctggccgcc atgaccgggc gggcactgta
     4981 tccgccgccg caaagcctga tggtcaacaa ttacccgccg ctgtcctttt atatcgtggg
     5041 ggcgctggcg cggctgacgg gcgatgctgt catcgccgga cgcattttgt cgttgatctc
     5101 ct
//
LOCUS       DATMDK010000409         4675 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2951567,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000409 DATMDK010000000
VERSION     DATMDK010000409.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 4675)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4675)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4675
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2951567"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1174
                     /locus_tag="VNN98_07885"
     CDS             <1..1174
                     /locus_tag="VNN98_07885"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM62057.1"
                     /translation="ELETGKRRWHYQLVHHDIWDRDVPCAAILCDIPHNGRIVKALAQ
                     PSKQCFLYVLNRETGQPIWPFVERKVPQGNVPGEWYSPTQPIPSKPPPYDVQSVDPST
                     IIDFTPELHAKALRLLSHYRTGPVYTPPSLSKADSTWGTLTSLATQGGTNWPGGCYDP
                     ETHTVYTFSETTVAVDGLVPGNPSFTDADYVRGTFSGAPTRAAVIQGGEDYLAPPTAV
                     ANAVAGAGTGGAEEFRPGVVTIDGLPLMKPPYGRITATDLTKGEIAWQVAHGDTPDFI
                     KNHPALKGLNIPRTGRPGLLGPTVTKSLVICGESGFATTPTGKRGAMLRAYDKKTGED
                     RGAVYMPAPQTGCPMTYMLGGRQYIVLTIGGPGFPAELIAYRLPGEVVAPPRAEER"
     gene            complement(1263..3638)
                     /locus_tag="VNN98_07890"
     CDS             complement(1263..3638)
                     /locus_tag="VNN98_07890"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HWM62058.1"
                     /translation="MSASLLMGTLSARAQNDTAADTGQPQAGTGQLEEVIVSARKRPE
                     DVQQVPIPVTVIGSAELERQNLVNFTDFQNKLPSFSVYLTNPKQLNIGVRGIGNNGFN
                     TDGIDASVGVFVDGVYSGRLGIVSNDFNDIEQVDLLRGPQGTLFGKNTTAGAIIINSK
                     KPSFTWGADGELTGGNEGYQQYKASVTGPLLDGRLAFRLSGFYTDRDGNYPNIYNGKD
                     ANARQGEGLKLQLLGNVTDDLTVRLIASTTSQNFNSIAPVALSVFTPGALQARMAAAG
                     YNLLVSNASDRQIAIDGTQTAATHANLISGQADWDLHDNGTLTSITAAQAWACFTNND
                     NDYTQLDALHDYGSCNNETQFSQEVRWASIKGGPVEAVAGGFFSSQQLGVDSRVQFGN
                     QYNIWAANPSATAFPNIGARTWANGAYAGALTGFGIRSHAEFHSQTQAIFGNATWHPD
                     DAQRLSLNIGLRQTWEAKNMVYDGQIASNPGGLNPAQINVMSAAGANAQLGHADDHLI
                     DKSLSGQVGASYQITPDIMAYVGYSRGHKSKGFNLLPENSSNPDPGVASAIAHGASQD
                     ILGETANNWEGGIKSEWFDHTLLVNLTLFNTLVKNAQANEAIGVGNTATKFLANVGAE
                     RSQGAELEAEAFIWDGLHLKGFIAYDDAHYSSFHNSVCPAETTALSCDLTGRQVAWAP
                     KWTMDLTAEYSGELFKGTLSYVNFDVNYRSSQNTTITLDPLAQIGGYALTSLRVGTLF
                     RENTIDAQLWVENLADESYFINLLGLTKSTGIVQGYPGNPRTFGATVRLHY"
     gene            4437..>4675
                     /locus_tag="VNN98_07895"
     CDS             4437..>4675
                     /locus_tag="VNN98_07895"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM62059.1"
                     /translation="MKIRIALALVVLAGTSALAQTSLPNPFGPPERQWARLADGKPWG
                     TTAGIEIGPHGEIWAIDRCGDGTCDGSAMAAVHQI"
BASE COUNT          865 a         1430 c         1469 g          911 t
ORIGIN      
        1 cgagctggaa accggcaagc gccgctggca ttaccagctt gtccatcacg acatctggga
       61 tcgcgacgtg ccttgcgccg cgatcctctg cgatatcccc cacaacggca gaatcgtaaa
      121 ggcgctggcc cagcccagca agcagtgttt cctctatgtg ctgaatcgcg aaacaggtca
      181 gcccatctgg ccgttcgtgg aaaggaaagt gccgcagggc aacgtgccgg gtgaatggta
      241 ttcacccacc cagcccatcc ccagcaagcc gccgccgtat gacgtgcaga gcgtcgaccc
      301 ttccaccatc atcgatttca cgcccgagtt acacgccaag gcgctccggc tgctgtcgca
      361 ctatcgcacc gggccggtct ataccccgcc ttcgctttcc aaagccgata gcacctgggg
      421 caccttgacc tcactcgcca ctcagggcgg caccaactgg cccggcggct gctacgaccc
      481 cgaaacccat accgtctaca ccttttccga aaccacagtg gcggtagatg gcctggtgcc
      541 cggcaatcct agcttcacgg atgccgatta tgtgcgcggc accttcagcg gcgcccccac
      601 cagggcggca gtgatccagg gcggtgaaga ttatctcgca cctccgacgg cggtcgctaa
      661 tgcggtggcg ggcgcgggaa ccggtggcgc agaagaattc cgccccggtg tggtgactat
      721 tgatggcctg ccgctgatga aaccgcccta tggccgcatc accgcgaccg atctcaccaa
      781 gggcgagatc gcctggcagg tcgcccatgg agatacgccg gatttcatca agaaccatcc
      841 ggcgctgaag gggctgaata ttccgcgcac cgggcggccc ggtcttcttg gaccaaccgt
      901 caccaagtcg ctggtgatct gcggcgagtc cggtttcgcc accacaccca ccggcaagcg
      961 cggcgccatg ctgcgcgcct atgacaagaa gaccggtgag gatcgcggcg cggtctatat
     1021 gcccgcgccg cagaccggtt gtcccatgac ttacatgctg ggcggccgcc agtatattgt
     1081 gctgacgatt ggcggtccgg gattcccagc cgaactgatc gcctatcgcc tgccgggcga
     1141 ggtcgtggcg ccgccgcgcg ctgaggagcg ctgaggctgg acgcgaggcc tctgtccggc
     1201 ggctgggcga cgccgcgcga catcatccaa agataggaag atcgcgcgac ccttgccggc
     1261 ttttagtagt gcaagcgaac cgtggcgcca aatgtgcggg gattgcccgg ataaccttgg
     1321 acaatgccgg tggacttggt gaggcccagc aggttgatga agtagctttc gtccgccaga
     1381 ttttcgaccc atagctgcgc gtcaatcgta ttttcccgaa acagcgtacc gacccgaagg
     1441 ctggtcaagg cgtaaccgcc gatctgggcc agcgggtcca gggtgatggt ggtgttctgc
     1501 gacgagcggt agttcacgtc gaagttcaca tagctcaaag tgcccttgaa cagttcgcct
     1561 gaatattccg cggtcaggtc catggtccat ttcggggccc aggcgacctg ccggccagtg
     1621 aggtcgcagc tgagcgccgt cgtttccgcc ggacagaccg aattgtggaa cgaggaataa
     1681 tgcgcatcgt cataggcgat gaagcccttc aggtgcagcc cgtcccagat aaaggcttcc
     1741 gcttccagtt ccgcgccctg cgagcgttca gcgccgacat tggccaggaa cttggttgcg
     1801 gtgttgccga cgccgatggc ttcattggcc tgggcgttct tcaccagagt gttgaacaag
     1861 gtcaaattca ccagcagcgt gtggtcgaac cattcgctct tgatgccgcc ttcccagttg
     1921 ttggcggtct cgcccaggat gtcctggctg gcgccgtgcg cgatggccga ggccacgccc
     1981 ggatcgggat tgctggaatt ttccggcagc agattgaagc ccttggactt gtggccgcgc
     2041 gaatatccca cataggccat gatgtcgggc gtgatctggt agctggcgcc cacctggccg
     2101 gagagcgact tgtcaatcag atggtcgtcg gcatggccaa gctgcgcatt ggcgccggca
     2161 gcggacatga cgttgatctg ggccggattg agaccgccgg gattggacgc gatctggccg
     2221 tcatagacca tgttcttggc ctcccaagtc tggcgcaggc cgatattcag cgacaggcgc
     2281 tgggcgtcgt cgggatgcca ggtggcgttc ccgaagatgg cctgggtctg ggagtgaaat
     2341 tcggcatggc tgcggatgcc aaaaccagtc aaggcgccgg cataggcgcc gttggcccat
     2401 gtcctggcgc cgatattggg gaaggccgtg gccgaaggat tggccgccca gatattgtac
     2461 tggttgccga actggacgcg tgagtcgacc cccaattgct ggctggaaaa gaatccgccg
     2521 gcgacggctt ccaccgggcc gcccttgatc gaggcccagc gcacttcctg ggagaactgc
     2581 gtctcgttgt tgcatgagcc atagtcgtgc aaggcatcga gctgggtata gtcattgtcg
     2641 ttgttggtga agcaggccca ggcctgggcg gcggtgatcg acgtgagcgt gccgttatca
     2701 tgcaggtccc agtccgcctg gccactgatc aggttggcgt gggttgccgc ggtctgcgtg
     2761 ccgtcaatgg cgatctggcg atccgacgcg ttgctgacca gcaggttgta accggcggcg
     2821 gccatgcgcg cctgcagggc gccgggcgtg aagaccgaaa gcgccaccgg cgcgatcgag
     2881 ttgaagttct ggctggtcgt cgaggcgatc aggcgcaccg tcaggtcgtc ggtgacattg
     2941 cccagcaact gcagcttgag gccctcgccc tggcgggcat tggcatcctt gccgttgtag
     3001 atgttgggat aattaccgtc gcggtcggtg taaaagccgg aaagccggaa ggcaagcctg
     3061 ccgtccagaa gcggacccgt gacgctggcc ttgtactgtt ggtagccttc gttaccgccc
     3121 gtcaactccc cgtcggcgcc ccatgtgaag ctgggtttct tggagttgat gatgatggcg
     3181 ccggctgtgg tgttcttgcc gaacaacgtg ccctgcgggc cgcgcaacaa atcgacctgc
     3241 tcgatgtcgt tgaaatcgtt gctgacgatg cccaggcggc cgctatagac cccgtcaacg
     3301 aacacgccga ccgaagcatc gatgccatcg gtgttaaagc cattattgcc gataccgcgc
     3361 acgccgatgt tcagttgttt gggattggtc agatagaccg aaaaagacgg aagcttgttc
     3421 tggaaatcgg tgaagttgac aaggttctga cgttccagct cagccgaacc gattaccgtg
     3481 accgggatgg gaacctgctg cacgtcttcc ggccgtttgc gcgcagagac gatcacttcc
     3541 tccagctgcc cggtgccggc ttgcggctgc ccggtatccg ccgcggtgtc gttctgggcc
     3601 cgggcggaca gtgtgcccat cagcaagctg gccgacatca taagcatcaa acgaaatgca
     3661 gcggtcttgg aattgccaga aatcatcgtg aaattgtccc gctcatggag cgccgggaga
     3721 ccggctggcc agttccgttg aggaatcttg gacgcatggc cacgcggcgc ggaaaacaaa
     3781 tgtctcgcca gccgttcgac cgaattacga ctctgcagaa actttataag cgcggtgcat
     3841 agaggcgata tgcgtcgctt ttgttacaaa ggcgcattcg agtggcgtat cgctcccgaa
     3901 tcttctcaaa agcttttatc tgcggcgtgt cgccacagcc gcacccctca cccttgcgca
     3961 ttggctcccg gctccttgcc aagtcaaata tgagcgcgcc ctgcttccac gtgccggctt
     4021 gctgcgatgg ccagcttccc cgcaaatcac ggacattggc aaaccattct cggcggacgc
     4081 ttatgcatgt tcacggacat aggcggactg tgcaaaagag caccacggtc ggccgcgcca
     4141 gaaccgggct ggtcaaatat ttcgtgccgg acgcgcaagc cggcgaagat gtggcgctgg
     4201 gcccaaacgg gcccctgtat ggcgcgacac caggcggcgt aacgcgcttt ttgcccaagg
     4261 cgcgccgata gcaagccctt cgcgcttcct gacgagctgg gaatggtact cctgtccccg
     4321 tattcattga cgcccgctcg ttcctttgtg cgaagcgctg acattgcgcc tctgatttgg
     4381 cgcggatagg gtctcgctca aaacctgcgg ccaggtccgc gaagagggga acgctcatga
     4441 aaatccgcat cgcgctggcg ctcgtcgtgc tggccggcac ctctgccctg gcccagacca
     4501 gcctgcccaa tcccttcggc ccgcctgagc ggcaatgggc caggctggcg gacggcaagc
     4561 cctggggcac caccgccggg attgagatcg ggccgcatgg cgagatctgg gcgatcgacc
     4621 gctgcggcga cggcacttgt gatggctcgg cgatggcggc ggtgcatcag atcga
//
LOCUS       DATMDK010000410         3158 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1569520,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000410 DATMDK010000000
VERSION     DATMDK010000410.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3158)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3158)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3158
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1569520"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..330)
                     /locus_tag="VNN98_07900"
     CDS             complement(<1..330)
                     /locus_tag="VNN98_07900"
                     /inference="COORDINATES: protein motif:HMM:NF024740.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM62060.1"
                     /translation="MSLPRLISGLSEIASNHDALICDVWGVVHDGHRHHPAAAEALYR
                     FKEKHGPVVLLTNAPRVPSEVAVQCTSYGLPPDCYDVIVSSGGAARDHLAARAQHHTL
                     PLYYIGPD"
     gene            complement(401..1780)
                     /locus_tag="VNN98_07905"
     CDS             complement(401..1780)
                     /locus_tag="VNN98_07905"
                     /inference="COORDINATES: protein motif:HMM:NF025056.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TIR domain-containing protein"
                     /protein_id="HWM62061.1"
                     /translation="MSNKVFLSYSSKDAKIASSICLALEARGHRCWMSSRDVKPGENY
                     QGAIVRAIRDAGVMVMVFSTNANNSDEIKKELALASQSRLMVIPVRAEDVLPSEDFTY
                     ELATRQWIDLFDNWERAIEQLGHQIDHAVPRTAEAQAPAAVPLARTNRMPLFAGIAAA
                     LLLTAAGGFWLMRPPPPPREAMPPPGVAQPAMAQPAMAQPVMERPPPPAMDPARLEAD
                     LWDSVKDSGDTAALNSYLAKYPGGLFSAAAKAKLASLSKSAPVVAPVATLVKPAPKAE
                     VPAKTESAAVAAPDKPSAANLNPLVQQAVDMARKAESRARELAAKAEDESRMAGNGAP
                     GFGVTAERGAAQRLGRLATRVTGGVAVISYANGDRYAGGTRNGERFGMGVYTGAEARI
                     YRERVGQFAADQLSGYAVVYRRDGRVRIGQWKDGGLNGYGAVYDAQGRLVEQGLYNND
                     ILATPLTGN"
     gene            complement(1867..>3158)
                     /locus_tag="VNN98_07910"
     CDS             complement(1867..>3158)
                     /locus_tag="VNN98_07910"
                     /inference="COORDINATES: protein motif:HMM:NF012772.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HWM62062.1"
                     /translation="WKREGGNNCRMTDRISSATKILLTLSLFFVCATIGAAMALFTGL
                     PVAILSGIVGFVCVQQLMASFARRRDKRAVAKELAHIRKSHLQFETALDDTRARLGDL
                     GGLIEQRANTQEKKIVAELKVLETLMRDFAGKISRGAAAVPQQPVRAQRGPASAYLNT
                     LGDKDELLETIRSSLEENRVDLYLQPMVSLPQRKLRYYEALSRLRAKNGDVIMPAQYI
                     AVAGQAGLMSVVDNLLLFRCVQIVRRLTQKSRDIGIFCNISGETLADKEFFPQFLDYM
                     KVNRDLAGQIIFEFSQDAILKAGVEGEKNLTALATMGFALSMDHVETLALDFLRLKAI
                     GFRHLKVRASTLTRGMKGADAQVAAEDFKKLLTRHGLNLIAERVEDEKTVIQLLDYAV
                     DYAQGYLFGEPRAVREDTLKPISALEPAAVLPFRKAG"
BASE COUNT          540 a         1018 c         1015 g          585 t
ORIGIN      
        1 gtcggggccg atataataga gcggcagggt gtgatgttgc gcgcgtgccg caaggtggtc
       61 ccttgcggcg ccgcccgaac tgacaatgac gtcgtagcaa tcgggcggca ggccatagct
      121 ggtgcattgg acagcgactt ccgagggcac gcgcggcgca ttggtcaaga gcaccactgg
      181 cccatgtttt tccttgaagc ggtacaaagc ctcggcagcg gcgggatgat ggcgatgtcc
      241 gtcatgcacc acgccccaga cgtcgcagat cagcgcatcg tggttggaag cgatctcgga
      301 aagtccggaa atcaggcggg gcaaagacat ggcgatccga taatgtccgg gcggggaaag
      361 aggcgatgcc atgcgccgcg ggcggggtca accgcgggcc tcagttgccg gtcagcgggg
      421 tggcgagtat gtcgttattg taaaggccct gctccaccag gcggccctgc gcgtcataca
      481 ccgcgccata gccgttcaga ccgccgtctt tccattgtcc gatgcggacc ctgccgtccc
      541 ggcgatagac cacggcatag ccgctcaact ggtcggcggc aaactggccc acgcgctcgc
      601 gatagatgcg cgcttcggcg ccggtataga cgcccatccc aaaccgctcg ccgttgcgcg
      661 tgccgcccgc atagcggtcg ccattggcat aggagatgac cgccacaccg cccgtcaccc
      721 gcgtcgccag ccgtcccagc cgctgtgctg caccgcgctc ggcggtgacg ccaaaacccg
      781 gcgcgccgtt tccggccatg cgggattcgt cttccgcctt tgccgccaat tcacgggcac
      841 ggctttccgc tttgcgcgcc atatccacgg cctgctgcac caggggattc aggttcgcgg
      901 cggacggctt gtccggcgct gccaccgccg cgctttcggt tttcgcgggc acctcggctt
      961 ttggcgccgg cttcaccaac gttgcaacag gcgctacaac gggtgcggac ttgctcaagg
     1021 atgccagctt ggctttcgcg gcggcgctga acaggccgcc gggatatttc gccagatagg
     1081 aattcagcgc cgcggtatcg ccgctgtcct ttaccgaatc ccataaatca gcctccagcc
     1141 tggccggatc catggccggc ggcggcggtc tctccattac cggctgggcc atcgccggct
     1201 gggccatcgc cggctgggcc acccccggcg gaggcatcgc ttcacgcggc gggggcggcg
     1261 gacgcatcag ccagaaaccg cccgcagccg tcagcagcag cgccgcggcg atgccggcaa
     1321 aaagcggcat ccggtttgtc cgcgccagcg gaacggcagc gggcgcttgc gcctcggcgg
     1381 tacggggaac ggcatggtcg atctgatggc ccagctgttc gatggcgcgt tcccaattgt
     1441 cgaacaggtc gatccattgg cgcgtcgcca gctcataagt gaaatcctcg ctgggtagca
     1501 cgtcttcggc gcgcaccgga atcaccatca ggcgcgactg gctggccagc gccagctcct
     1561 tcttgatttc atcggaattg ttggcgttgg tggaaaacac catcaccatc acgccggcgt
     1621 cgcggatggc gcgcacgatg gcgccctggt aattctcacc cggcttgacg tcgcggctgg
     1681 acatccagca gcgatggccg cgcgcttcca gcgccaagca gatggatgac gcgatcttgg
     1741 cgtccttgct ggaatagctg agaaagactt tgttcgacat ggcccccgcc cggccggaag
     1801 cttaaagcag acgggccgcg tcagccagct tttctaccgg ccacgcttgt cgtggcccag
     1861 cgggcgttag cccgcctttc taaaaggcag aactgcggcc ggttccaggg cgctgatcgg
     1921 cttgagcgtg tcctcgcgca ccgcgcgcgg ctcgccgaac aggtagcctt gcgcatagtc
     1981 cacggcatag tccagcagct ggatcacggt cttttcgtct tcgacccgct cggcgatcag
     2041 gttcaggccg tggcgggtga gcagcttctt gaaatcttcc gccgccacct gcgcatccgc
     2101 gcccttcatg ccgcgcgtca gggtcgaggc gcgcactttg agatgacgga agccgatggc
     2161 cttgaggcgc aggaaatcca gcgccagggt ttcgacatgg tccatggaca aagcaaagcc
     2221 catggtcgcc agggcggtga gattcttttc gccttcgacg ccggccttca ggatcgcgtc
     2281 ctggctgaac tcgaaaatga tctggcccgc caggtcgcga ttgaccttca tatagtccag
     2341 gaactggggg aagaattcct tgtcggccag ggtttcgccg gagatgttgc agaagatgcc
     2401 gatgtcgcgg cttttctggg tcaggcggcg cacgatctgc acgcagcgga acagcagcag
     2461 attgtccacc acgctcatca acccggcctg gcccgccact gcgatatact gggccggcat
     2521 aatgacgtcg ccatttttgg cgcgcagccg cgacagcgct tcgtaatagc gcagcttgcg
     2581 ttgcggcagg ctgaccatgg gctgcagata cagatcgacg cggttttctt cgaggctcga
     2641 gcggatggtc tcgagcagct cgtccttgtc gcccaaggtg ttgagatagg ccgatgcagg
     2701 cccgcgctgg gccctgaccg gctgctgcgg caccgcggcg gcgccgcggg agattttccc
     2761 cgcgaaatcg cgcatcaggg tttccagcac tttcagctcg gcgacgatct tcttttcctg
     2821 ggtgttggcg cgctgttcga tcagcccgcc cagatcgccc agccgcgcgc gggtatcgtc
     2881 cagcgcggtt tcgaattgca gatggctctt gcgaatgtgc gccagttcct tggcgaccgc
     2941 gcgcttgtcg cggcggcgcg cgaaactcgc catcagctgc tgcacacaga caaagcccac
     3001 gatcccggac aggatcgcca ccggcaggcc ggtgaacagc gccatcgccg cgccgatggt
     3061 ggcgcagacg aaaaacaggc tgagggtcag caatattttg gtggcagagg agatgcggtc
     3121 ggtcatgcgg caattattgc cgccctcgcg tttccaat
//
LOCUS       DATMDK010000411         2844 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1342417,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000411 DATMDK010000000
VERSION     DATMDK010000411.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2844)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2844)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2844
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1342417"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..197)
                     /locus_tag="VNN98_07915"
     CDS             complement(<1..197)
                     /locus_tag="VNN98_07915"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM62063.1"
                     /translation="MIDLGAGLLRQLPAETAHRATLALARAVGPFLPAPPPDDPRLAV
                     TAAGLSFPNPIGLAAGFDKNA"
     gene            276..911
                     /locus_tag="VNN98_07920"
     CDS             276..911
                     /locus_tag="VNN98_07920"
                     /inference="COORDINATES: protein motif:HMM:NF012920.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HWM62064.1"
                     /translation="MLTHSQIWRALDALAAQHGMSPSGLAKLAGLDPTTFNKSKRGTA
                     NGKLRWPSTESLAKALSAAGASLEDFVSLVSDAGHRAVRARMVPLIGMVQAGSAGFFD
                     DAGFPAGSGWEDIAFPEIADAHCYALEITGDSMLPVYRDGDRIMVSPSGSLRRGDRVV
                     VKTHAGEVMAKLLGRMTAQRIELKSFNPAFEDRNFALSEIAFVHRIIWASQ"
     gene            complement(1059..1592)
                     /locus_tag="VNN98_07925"
     CDS             complement(1059..1592)
                     /locus_tag="VNN98_07925"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM62065.1"
                     /translation="MWKFAPLILACLLLAGCWQTVTRPYRNVASLQPFTAGAITETDG
                     DGKGTHYALKIIARGRYRMTQTDRGQDFGQGFELGFFPLPGAPSHVLIYEAAALDHTV
                     QGADLRYYGLLVIIGQKSAQEIRPDCEKDARAARASGTRKGKDGACTFTDRAALEKSL
                     LALWKSGKKAEYSYILK"
     gene            complement(1605..2375)
                     /locus_tag="VNN98_07930"
     CDS             complement(1605..2375)
                     /locus_tag="VNN98_07930"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM62066.1"
                     /translation="MRSALLALLLLVSSAAQAATTDEMFGVYAKGDYEQAARMGEASH
                     TAPGLAIAARAVLAEEVLRETPCLTCLERAESLARQSVAADPHFALSQVWLAVSLGYE
                     ARIIGAVKARLKDSPAQSRAALETAMTDEPQNAFAISALGGWHMEVVRGGGAFLARLA
                     YGASEKQALALFDRAVHLAPGNVAVHYQIALTLAGFAADKYRARIAAELKSAVSGIAE
                     TAYEKKMQGRAGELLGLLNQGAHDAFDSRVRKYQGFVD"
     gene            complement(2372..>2844)
                     /locus_tag="VNN98_07935"
     CDS             complement(2372..>2844)
                     /locus_tag="VNN98_07935"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM62067.1"
                     /translation="YPVSFALLLNLVSASNAHNRDVLWGFIRAYSPEPVSPQTNPGLE
                     KLVGFALRYYEDFVKPTKMFRSPGDKERAALADLADRLEQLGDEHDGVTVQNVIYEVG
                     KAHGFEPLRTWFAALYEVLLGQTQGPRFGSFAALFGCAQTAAMIRSGLAGEFLK"
BASE COUNT          540 a          930 c          877 g          497 t
ORIGIN      
        1 tcggcattct tgtcgaagcc ggcggccagg ccgatgggat tgggaaatga aagcccagcg
       61 gcggtgaccg ccaaccgcgg atcgtctggc ggcggcgcag gcagaaacgg tcccaccgcc
      121 cgggccagcg ccaaggtcgc ccggtgggcg gtttcagcgg gcagctgcct gagcagcccg
      181 gccccaagat cgatcatccc caccaacggc tttcctatgc atgggcccgg cgttattata
      241 ggaatataac cgtaaagtcc ggtttgattc ctaacatgct gacccattcc caaatctggc
      301 gcgccctgga cgccctcgcc gcccagcatg gcatgtcgcc ctcaggcctg gccaagctgg
      361 ccgggctgga ccccacaact tttaacaaaa gcaagcgcgg caccgccaat ggaaagctgc
      421 gctggccctc gaccgaaagc ctggccaaag ctctgtcagc cgccggcgcc agcctggagg
      481 atttcgtcag tctggtcagc gatgctggtc accgtgcggt gcgggcgcgg atggtacccc
      541 tgatcggcat ggtccaggcc ggcagcgccg gctttttcga cgatgccggt tttcctgccg
      601 gctcgggctg ggaagacatc gcctttcccg agatcgccga cgcgcattgc tatgcgctgg
      661 agatcaccgg cgattccatg ttgccggtct atcgcgacgg cgaccgcatc atggtgtcgc
      721 cgtcgggatc cttgcggcgc ggcgaccggg tggtggtcaa gacccatgcc ggcgaagtga
      781 tggccaagct gctgggccgc atgacggcgc agcgcatcga actcaagagc ttcaatcccg
      841 ccttcgagga ccgaaatttc gcgctgagcg aaatcgcgtt tgtgcatcgg attatttggg
      901 caagtcagta accggaaaaa tcaatatgtc atggcccgca aatgcgggcc acccaggtgg
      961 gtcaagcgca attcctcgaa ttaaaacaga gaccccgcga atctgagata gcgcaaagat
     1021 gtcaactggg tggcccgcat ttgcgggcca tgacaatctt atttcaggat gtaactgtat
     1081 tccgccttct tcccgctttt ccacagcgcc agcagcgatt tctccagtgc cgcgcgatcg
     1141 gtaaaagtac aagcgccgtc cttgcctttg cgcgtgcccg aggctcgggc ggcgcgcgca
     1201 tccttctcgc agtcggggcg gatttcctgt gcgcttttct gcccgatgat caccagcaga
     1261 ccgtaataac gcagatcagc gccctggacc gtatggtcca aggcggccgc ctcatagatc
     1321 aggacatgcg agggcgcgcc gggcagcggg aagaatccca gctcaaagcc ctggccgaaa
     1381 tcctggccgc ggtcggtctg ggtcatgcga tagcggccac gcgcgataat cttcagggcg
     1441 tagtgcgtac ccttgccgtc gccatccgtt tcggtgatcg cgcctgcggt gaagggctgc
     1501 agcgacgcga cattgcgata ggggcgggtg acggtctgcc agcagcccgc cagcagcaga
     1561 caggccagga tgagaggcgc aaatttccac aaagcgcaga tctcctaatc cacaaagccc
     1621 tgatatttgc ggacccgcga atcgaacgca tcatgcgcgc cctgattcag caggccaagc
     1681 aattctccgg cacggccctg catctttttc tcataagcgg tttcggcgat gccggaaacc
     1741 gccgatttga gttccgccgc gatgcgggcg cggtacttgt cggcggcgaa ccccgccaag
     1801 gtcagcgcga tctggtaatg caccgcgaca ttgccgggcg ccaagtgaac ggcgcggtcg
     1861 aacagcgcca gagcttgctt ttcgctggcg ccataagcca gccgcgccag aaaagcgccg
     1921 ccgccgcgca cgacctccat atgccagccg cccagcgccg atatcgcaaa agcgttctgg
     1981 ggttcgtccg tcatcgctgt ttccagcgcc gcgcgggact gcgccggaga gtctttcagc
     2041 cgcgccttga cggcgccgat gatgcgggcc tcatagccca gcgaaaccgc cagccagact
     2101 tggctcaagg cgaaatgcgg atcagcggcc accgactgcc gcgccaggct ttcagcgcgc
     2161 tccaggcagg tcaggcaagg tgtctcgcgc aacacttcct cggccagcac ggcgcgggcc
     2221 gcgatcgcca gccccggcgc ggtgtgtgat gcctcgccca tccgcgccgc ctgttcatag
     2281 tcgcctttgg catagacccc gaacatctcg tccgtggtcg cggcctgcgc cgcagatgat
     2341 accagcagca acagggccag cagcgcggat ctcatttcaa aaactcgccc gccaggccgc
     2401 tgcggatcat cgccgcggtc tgggcgcagc cgaacagagc ggcgaaagag ccgaagcgcg
     2461 gtccctgcgt ctggcccagc agcacttcgt acaaggcggc gaaccaggtg cgcaacggct
     2521 cgaaaccgtg cgccttgccg acttcgtaga tcacattctg caccgtcacg ccgtcgtgct
     2581 catcgccgag ctgttccagc cggtccgcca gatcggccag cgccgcacgc tccttgtcgc
     2641 cggggctgcg aaacatcttg gtcggcttca cgaaatcctc gtaatagcgc agcgcgaagc
     2701 cgaccagttt ttccaggccc gggttggtct gcggcgacac aggctccggc gaataggcgc
     2761 ggatgaagcc ccacagcacg tcgcgattgt gcgcgttgga ggccgagacc agattgagca
     2821 gcagcgcgaa gctgacggga tagc
//
LOCUS       DATMDK010000412         3798 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1343300,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000412 DATMDK010000000
VERSION     DATMDK010000412.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3798)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3798)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3798
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1343300"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..729)
                     /locus_tag="VNN98_07940"
     CDS             complement(<1..729)
                     /locus_tag="VNN98_07940"
                     /inference="COORDINATES: protein motif:HMM:NF015649.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HWM62068.1"
                     /translation="MVETAQEKQALAATLRQGISLFQQGHLSEAEALVTEAQRRHPGD
                     FDVLHVLGIMLMQGSQPARGVALIHEALKIRRDFAPAYNNLGNGYRRLQRLDQAMQAY
                     DRAITLQPGFVEAYNNRGNTLVVLGRAQDALADFETAARLDPHLAEASNNRAVALLKL
                     GRPSEALSAADSALALQPGFAQAHIARAQALLALGSGDKALESSDRAVGLKPDLAEAH
                     ICRANMLLAAGHSAEAIAGYDRAIT"
     gene            complement(745..1269)
                     /locus_tag="VNN98_07945"
     CDS             complement(745..1269)
                     /locus_tag="VNN98_07945"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM62069.1"
                     /translation="MRYAAASLLVLAFAVAPSYGATREDVYRAFQRCDAMSENRAWLD
                     CIYGAVQPMRAELGLPPALANQVKLVPPATGAATPAKVPEKKGGLLSYVLGGKREVDG
                     MAFRAYSFDGSGRFTITLSDGQVWRQVDDDHRLAAWKASPGRYQASIRSGALGSSILE
                     VRGEPGAFMVERVP"
     gene            1495..1950
                     /locus_tag="VNN98_07950"
     CDS             1495..1950
                     /locus_tag="VNN98_07950"
                     /inference="COORDINATES: protein motif:HMM:NF024834.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HWM62070.1"
                     /translation="MHSGRLLVVFGTVLIVAWAVLSPASHAQPTKDATQLSFTAAQAA
                     TGEVEYKASCIDCHGPNLNDGEFGGPPLKGDAFTAKWLKLPASALVGYVHAAMPPDAP
                     GRLPMGTYVEIVAYILSVNGVPPGTRDMPADMSTLAALHYPAQKSNQGP"
     gene            1994..2956
                     /locus_tag="VNN98_07955"
     CDS             1994..2956
                     /locus_tag="VNN98_07955"
                     /inference="COORDINATES: protein motif:HMM:NF016777.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HWM62071.1"
                     /translation="MTDFRPQRRAVVAGLAGAAFAGSFASAQAADIPIIDAHVHLFDP
                     RRPQGVPYSGPKGQPPQLALPEIYHGLAAPTGVVGAIVIEASSWVEDNLWILERAESD
                     PLFVGVVGSLQPDKPDFPVFLERFAKNPLWRGIRYARVWTMDQGKQVLKPGMADGLKL
                     LVQADLSLDMANPSLDLMRGALLALEAAPGLRVIMDHMPQFDPTPETQATYDQLIDVL
                     AQHPTFFVKLSQVIHRNSQGVIDPNLAAYRGRLDRLVAAFGEDRVMFGGNWPETVGTA
                     TIPESVALMRAYFADKPRAQAEKYFWRNSKAIYKWAKRSSNQPG"
     gene            complement(3023..3592)
                     /locus_tag="VNN98_07960"
     CDS             complement(3023..3592)
                     /locus_tag="VNN98_07960"
                     /inference="COORDINATES: protein motif:HMM:NF015862.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme-binding protein"
                     /protein_id="HWM62072.1"
                     /translation="MTKSLFGGFLLILAAAPAQVQAQPPAAPVPGPTIAAPPSNEEVR
                     WPRPPRARGIPTALAAEAALEAISVCKADGYKVNALVTDSGGVPIALLSGEGAAAITQ
                     RIAMSKAQSVIKYHMTSGEVTARAAADATLMAQLLADPMIGTPRQGAIPVMIGTDLAG
                     AIAVSGAPSGDKDEPCALAALNKIKGRLN"
BASE COUNT          714 a         1223 c         1158 g          703 t
ORIGIN      
        1 ggtgatcgcc ctgtcatatc cggcgatggc ttccgcggaa tggccggccg ccagcagcat
       61 gttggcgcgg cagatgtgag cctcggccaa atccggcttc agtcccacgg ccctgtcgga
      121 actctcaagc gccttgtcgc cggaaccaag cgccagcaat gcttgcgctc tggcgatatg
      181 ggcctgggca aagccgggct gcagcgccag ggctgaatcg gccgcagaca gagcctctga
      241 cggccgtccc agtttgagca acgccaccgc gcggttgttg ctggcctccg ccagatgcgg
      301 atcgagtcgc gcggccgttt caaagtcagc caatgcatcc tgcgcgcggc caagcaccac
      361 cagcgtgttg ccgcgattgt tgtaggcctc gacaaagccg ggctgcagcg tgatcgcccg
      421 atcataggcc tgcatggcct ggtcaaggcg ttgcaggcgt cggtatccgt ttcccagatt
      481 gttgtaggcg ggtgcaaaat cgcggcgtat cttcagtgct tcatggatca gcgccacgcc
      541 gcgcgcgggc tggctgcctt gcatcagcat gatgccaagg acatgaagca catcgaaatc
      601 gccgggatgg cggcgttgcg cttcggtgac cagcgcttcg gcttcgctca agtggccttg
      661 ctggaacagg gaaatgccct ggcgaagcgt ggcggcaaga gcctgtttct cctgcgctgt
      721 ttcaaccatg cgccaagacc aaaattaagg gacccgctct accataaagg cgcccggctc
      781 cccccgcacc tccaggatgc tgcttcccag cgcgccggag cggatcgaag cctgataccg
      841 cccggggctc gccttccatg ccgccaggcg gtggtcgtca tcgacctggc gccaaacctg
      901 gccgtcggaa agcgtgatcg tgaaccgccc ggaaccgtcg aagctatagg cgcggaatgc
      961 cattccatcc acctcccgct tgccgcccaa aacataagat aggagacccc ccttcttctc
     1021 gggaactttc gcaggggtag cggctccggt ggccggcggc accagcttga cctggttcgc
     1081 aagcgccggc ggcaacccaa gctccgcccg catgggctgg accgccccat agatgcagtc
     1141 caaccaggcg cgattttcgc tcatggcatc gcagcgctga aacgcccggt acacgtcttc
     1201 ccgcgtggcg ccataagacg gcgcgacggc aaacgccagg acgagcagcg atgcggcggc
     1261 gtatctcatc tgtctttcag acggcaattg cgaggtccgg cggttaacgc atatcgcggc
     1321 gccgcaggcc cgcttttgtt atttgggaaa actttaggca gggtatcggc gccaggcaac
     1381 gccgatcaag gggcggaaac gccttcaaat cccacccggt gagccgggac ggttcgtccc
     1441 tgctgtctcc gacctgtgct attgggtata aacctcttct gatcggagat ggcagtgcat
     1501 agcgggcgcc tgctggttgt ctttggaaca gtcctgatcg tcgcatgggc cgttctgtcg
     1561 cccgcatccc atgcccagcc cactaaagat gccacgcaac tgtccttcac cgcggcgcag
     1621 gcggccaccg gcgaggtgga atacaaggcc agctgcatcg actgccacgg accaaatctc
     1681 aatgatggcg agttcggcgg gccgccgctc aaaggcgacg ccttcaccgc caaatggctc
     1741 aagctcccag caagcgccct ggttggctat gtccatgccg cgatgccgcc cgatgcaccc
     1801 ggccgcctgc cgatgggcac ctatgtggag atcgtcgcct atatccttag cgtaaacggc
     1861 gtgccgccgg ggacaaggga catgccggcc gacatgagca cgctggcagc gctgcattac
     1921 ccggcacaaa agagtaatca gggaccatga atctccgacc tcgcgcgtcg ataaacaggg
     1981 aaggaaaaca ctcatgaccg attttcgtcc gcagcgccgc gcggtggttg ccggccttgc
     2041 cggcgccgca ttcgccggca gcttcgcctc ggcccaggcg gcggacattc ccatcatcga
     2101 cgcgcatgtc catcttttcg atccgcggcg gccgcagggc gtaccctatt ccgggccgaa
     2161 ggggcagcct ccgcagctgg ccctgcccga aatctatcac ggtctggcgg cgcccaccgg
     2221 cgtcgtgggc gcgatcgtca tcgaggcgag ttcctgggtg gaagacaatc tctggattct
     2281 ggaacgtgcc gaaagcgatc cgctgttcgt cggcgtggtt gggagcctgc agcccgacaa
     2341 gcccgacttt cccgtattcc tggaacggtt cgccaagaat ccgctgtggc ggggcatccg
     2401 ttatgcccgg gtctggacca tggatcaggg caagcaggtg ctgaagccgg gcatggccga
     2461 tggactcaag ctgcttgttc aggccgacct gtccctggac atggccaatc cctccctcga
     2521 cttgatgcgc ggcgcgctgc tggcactgga ggctgcgccg ggcctgcgcg tcatcatgga
     2581 tcacatgccc cagttcgatc ccacaccgga aacccaggcg acgtacgacc agctgatcga
     2641 tgtgctggcg cagcacccca ccttcttcgt caagctgtcc caggtgatcc atcgcaacag
     2701 tcagggcgtg atcgacccca acctggcggc ctatcgcggg cgcctggacc ggttggtcgc
     2761 cgccttcggg gaggatcgcg tgatgttcgg cggcaactgg ccggaaacgg tgggcaccgc
     2821 gaccatcccg gaatcggtgg cgctgatgcg cgcttatttc gcggacaagc ccagggccca
     2881 ggcggaaaag tatttctggc gcaactccaa ggcgatctac aaatgggcca agcgcagcag
     2941 caatcagccc ggctgaccat gcccaaacac gaacttcggc gtgacacttc tcgattcgat
     3001 ttgatcgtgc ccaagcggcg atttaattga gccggccctt tatcttgttc agcgccgcca
     3061 gcgcgcaagg ttcgtcttta tctccactcg gcgcgcccga tacggcaatg gcgccggcaa
     3121 ggtcagtgcc aatcatcacg ggaattgccc cctgccgtgg cgtgccgatc atcggatctg
     3181 ccaacagttg cgccatgagg gtagcatcgg ccgccgccct ggctgtcact tccccgctgg
     3241 tcatgtgata cttgatgacg ctttgcgcct tgctcatcgc tatgcgctgg gtaatggcgg
     3301 cggccccttc accggacagc agcgcaatag gaacacctcc cgaatccgtg accaaggcgt
     3361 tgaccttgta gccgtctgcc ttgcaaacag agatcgcctc cagcgccgct tcggcagcca
     3421 aagcggtcgg aataccccgc gcccgcggcg gacgtggcca gcgtacttct tcgttggaag
     3481 gaggcgcggc gatcgtaggt cccggcactg gcgcggctgg cggctgcgct tggacttggg
     3541 ccggagctgc tgccagaatt aaaagaaatc cgccaaacaa tgatttcgtc atggtttgag
     3601 ctccgatttt ccgatccgcg gtaccgtctg tcggctggca ggtcaaaaac accgtctcat
     3661 ccgctgagac atgacatgtc gtcatccttg gagaatccgc ttcaacgcga caatcattcg
     3721 tgtgtagcgt ccgcggcaaa aaccgataaa aatgggggag aagaaatatg agaggtggga
     3781 cccaagcgaa tgtcgcag
//
LOCUS       DATMDK010000413         2096 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1810896,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000413 DATMDK010000000
VERSION     DATMDK010000413.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2096)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2096)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2096
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1810896"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..714)
                     /locus_tag="VNN98_07965"
     CDS             complement(<1..714)
                     /locus_tag="VNN98_07965"
                     /inference="COORDINATES: protein motif:HMM:NF025025.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HWM62073.1"
                     /translation="MHSLFFDIGWGLAAIAVVGAAYTMLAAALVGRFMQSAENAAAHS
                     PAVTILKPLHQGEPDLSRNLETFFAQDYDGAVQILFGVHDENDPAIAVVRALQARYPH
                     LDTTVVVDTALYGANAKVSNLINMLPAARHDTLVLSDSDIAVGHRWLSQVTAALARPG
                     VGIVTCFYTGEPAKDGHKLWSSLAAMSTSYTFLPNAVLGTSLGLAAPCFGSTIALKRQ
                     TLDEVGGFAAFADQLADDYE"
     gene            908..>2096
                     /locus_tag="VNN98_07970"
     CDS             908..>2096
                     /locus_tag="VNN98_07970"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HWM62074.1"
                     /translation="MVKIQANPAPQQATALVSQSLRAGDIEGADRALAPLLDHTTADP
                     RLLHLAGLVRMHQQRFADAVQMFSRARAADPREALLAFSHGTALQWLEQPDEAVAAFR
                     DAFRLNPGYAEAYYEAGTSLKRLGRLDEAAEIFRKCARALPGDVQARLALGSVLLDCG
                     RPQEAETVLGRALNEPASPPVKGALHHNFALALHRQHRNEEALEHFAHAKALDPDLPF
                     TDAIRAEILQDLKRYDEAVEISRQMIARDPANPDWHKFHNELLYRLGRSGDYLKSYDD
                     APQTAPLLLSKAFFLSHEKRAQEALETYRQAASLAPDDRLAAAGAASALTMLGRYGEA
                     MAEFDKILARYGDDSELHGCAAEAALQGGDPQKAVALCQRALVLDPHDQIALSTMGTA
                     WRVM"
BASE COUNT          393 a          682 c          671 g          350 t
ORIGIN      
        1 ctcgtaatcg tcggccagtt ggtcggcgaa agcagcgaag ccgccgacct cgtccaaggt
       61 ctggcgcttt aacgcgatgg tggaaccgaa gcagggcgcg gccaggccga gactggtgcc
      121 cagcactgcg ttgggcagga aggtataaga agtgctcatc gccgccagcg acgaccatag
      181 tttatggccg tccttggcgg gctcgccggt atagaagcag gtgacgatgc cgaccccggg
      241 acgcgccagg gcggcggtca cttgcgacag ccagcgatgc cccacggcga tgtcgctgtc
      301 cgacagcacc agcgtgtcat gccgcgcggc tggcaacata ttgatcaggt tggagacctt
      361 ggcattggcg ccatacagcg ccgtatccac cacaacggtg gtgtcgagat gcggatatcg
      421 ggcctgcagc gcgcgcacca ccgcgatggc aggatcgttc tcgtcatgca cgccgaacag
      481 aatctgcacc gcgccgtcat aatcctgggc gaagaaggtt tcgagattgc gcgacaggtc
      541 gggctcgccc tgatgcaacg gcttcaagat ggttacggcg gggctgtggg cggcggcgtt
      601 ctcagcgctc tgcatgaagc ggccgaccag tgccgcggcc agcattgtgt aggccgcgcc
      661 gaccaccgct atggccgcca aaccccagcc gatatcaaag aaaagcgaat gcatgctcac
      721 gtatctggcc gccccccgcg acagatacgt attagagcat cgttattcga ggggggaagc
      781 cccattcagt gacattttgc gacaattaga catgctgtcg cttttttgcc aaggcattga
      841 aaatacacga tttagctatc gccttgggga cctgacaggc gcggcgcctc tcctataggc
      901 tgcccccatg gtcaaaatcc aagccaaccc ggccccccaa caggccaccg ccctggtgag
      961 tcagtccctg cgggccggcg atatcgaggg ggcggaccgg gccctggcgc cgctgctgga
     1021 ccacaccacc gccgaccccc ggctgctgca tctggccggg ctggtgcgca tgcaccagca
     1081 gcgctttgcg gacgccgtcc agatgttttc ccgggcccgc gccgccgatc cgcgcgaggc
     1141 tctgctggcc ttcagccatg gcaccgccct gcagtggctg gagcagcccg atgaagcggt
     1201 ggcggctttt cgcgacgcct ttcgcctgaa tccaggttat gccgaggcct attacgaagc
     1261 gggcaccagc ctgaaacggc tgggacgcct tgatgaggcg gcggagattt tccgcaaatg
     1321 cgcgcgcgcc ctgcccggcg atgtgcaggc gcggctggcg ctgggcagcg tgctgctgga
     1381 ctgcggccgg ccgcaagagg ccgaaaccgt cctcgggcgc gccctgaatg aaccggcctc
     1441 gccgccggtc aagggcgcgc tgcaccacaa tttcgcgctg gcgttgcacc gtcagcacag
     1501 gaacgaagag gcgttggaac atttcgcgca tgccaaggcg ctggatcccg atctgccctt
     1561 caccgacgcc atccgcgccg agattctgca ggacctcaaa cgctacgacg aagccgtgga
     1621 gatttcgcgc cagatgatcg cgcgcgatcc cgccaatccg gattggcaca aattccacaa
     1681 cgagctgctc taccgtctgg ggcgcagcgg ggactatctc aaatcctatg acgacgcgcc
     1741 ccagaccgcg ccgctgttgc tgtcgaaagc tttttttctc agccatgaga aacgcgcgca
     1801 agaggcgctg gaaacctatc gccaggccgc cagcctggcc cccgacgacc ggctggcggc
     1861 ggcgggcgcc gccagcgcgc tgaccatgtt gggacgctat ggcgaggcga tggcggaatt
     1921 cgacaaaata ctggcgcgct atggcgacga ttccgaactg catggctgtg ccgccgaagc
     1981 cgcgctgcag ggcggcgatc cgcaaaaagc ggtagcgcta tgccagcgcg ccctggtgct
     2041 cgacccgcat gaccagatcg cattgtccac catgggtacc gcctggcgcg tgatgg
//
LOCUS       DATMDK010000414         4896 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2041991,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000414 DATMDK010000000
VERSION     DATMDK010000414.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 4896)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4896)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4896
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2041991"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..261
                     /locus_tag="VNN98_07975"
     CDS             <1..261
                     /locus_tag="VNN98_07975"
                     /inference="COORDINATES: protein motif:HMM:NF025054.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HWM62075.1"
                     /translation="YKSFRARRGLFVDDLYVRPDFRGHGLGRSLLAHLAAKAQGAGGF
                     LEWQVLDWNAPSIAFYKSLGAQPMAEWLNYRLDGESLERLAS"
     gene            258..731
                     /locus_tag="VNN98_07980"
     CDS             258..731
                     /locus_tag="VNN98_07980"
                     /EC_number="1.5.1.3"
                     /inference="COORDINATES: protein motif:HMM:NF012413.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004146 - dihydrofolate reductase activity
                     [Evidence IEA];
                     GO_function: GO:0050661 - NADP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrofolate reductase"
                     /protein_id="HWM62076.1"
                     /translation="MSEIVLVVAIADNGVIGKDGGIPWHISEDLKRFKALTMGHTIVM
                     GRKTWDSLPKKPLPGRINVVVTRQADWRADGALTAASLGQATAGTSGTVMVIGGEEIY
                     QRALPMASRIELTEVHKDFDGDAKFDLDRSGWRETAREDHVTADGLRYSYVTLTR"
     gene            complement(735..1904)
                     /gene="apbC"
                     /locus_tag="VNN98_07985"
     CDS             complement(735..1904)
                     /gene="apbC"
                     /locus_tag="VNN98_07985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020044934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster carrier protein ApbC"
                     /protein_id="HWM62077.1"
                     /translation="MTVAREDILKALDQVIDPVSGRTVVQQDMIQGLVVKDGHVGFVL
                     EVAAGRGPQSEPLRKICEAMVLGVKGVKSVTAVLTSHDGHGHEDHGQAHDHNHNHQEG
                     HAGHAHGHAAPKPAVAKKAPPAPAGIPGVRNIIAVASGKGGVGKSTIAVNLALSLSRL
                     GLKVGLLDADIYGPSLPRLLNITEKPGSDGHTLLPIEKHGLKTMSIGFMVKEDEAMIW
                     RGPMVQSALSQMLSDVAWAPLDVLVLDMPPGTGDAQLTIAQRVPLKGAVIVSTPQDIA
                     LIDARKGIVMFNKTQVPILGVVENMSMFTCPDCGSSHAIFGHGGARDTAASLGVPFLG
                     EIPLVPRIRETSDAGTPVSVSVPDGPEALAFLELAKKVAAALETVSKPAPQIVIE"
     gene            complement(1939..2559)
                     /locus_tag="VNN98_07990"
     CDS             complement(1939..2559)
                     /locus_tag="VNN98_07990"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM62078.1"
                     /translation="MKRLDAHSKLVSLLCFALLAMGSLPLLSACGGGLLPDQKAANAS
                     PFETYDQVVDAFDQIVPGMTRAEDLANLGFDARTANVDVLSYLNVEERFLPAAGVRWE
                     QLNPAVQACIRAEAFCTGYVFHPGRTASKRLGHFLPDVLGFERITRSTRWSADVILLV
                     MDGRVVHKVFSGNPRTENLDDRRQPLGPLQDLGGALARAAGSAPSY"
     gene            2816..4192
                     /locus_tag="VNN98_07995"
     CDS             2816..4192
                     /locus_tag="VNN98_07995"
                     /inference="COORDINATES: protein motif:HMM:TIGR02037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DegQ family serine endoprotease"
                     /protein_id="HWM62079.1"
                     /translation="MTPAWARPAPDSFADLAGKLLPTVVNISTSQTLKAPPQNAMPQL
                     PPGSPLEDLFKNFLGPKPNTPRHVTSLGSGFIIDASGFIVTNNHVIEDSDQITVSLQD
                     GTQLPAKVIGRDIKTDLALLKVTSRKPLPATRFGDSDHARVGDWVIAIGDPFGIGSTV
                     TAGIVSARNRNINAGPYDDFIQTDAPINRGNSGGPLFNMDGDVIGINSAIFSPSGGSV
                     GIGFAIPANLAREVVGQLRQFGIAKRGWIGVRIQPVTPEIAEGLGLPTSQGALIADVT
                     KGGPAAQAGLVNGDLVTGFDGKFVPDDRALPRIVADTPIGKTVSIEVLRKGRKQTLKI
                     TVQKLADDAKVDKPAKAPPAPVKNQSKVTQMGLTLGALDAPARAKFKIAAAVQGVAVT
                     AVDAGSAAAEKNLRAGDVIVEVGGQAVKTPDDVTKRVDADAKAGKKVALMLINRDGEL
                     QYLGLKLN"
     gene            complement(4228..>4896)
                     /gene="serB"
                     /locus_tag="VNN98_08000"
     CDS             complement(4228..>4896)
                     /gene="serB"
                     /locus_tag="VNN98_08000"
                     /EC_number="3.1.3.3"
                     /inference="COORDINATES: protein motif:HMM:TIGR00338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0036424 - L-phosphoserine phosphatase
                     activity [Evidence IEA];
                     GO_process: GO:0006564 - L-serine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoserine phosphatase SerB"
                     /protein_id="HWM62080.1"
                     /translation="EKRRKKLLLADMDSTIIGVECLDELADMAGLKPEIAAITERAMR
                     GELDFEAALKQRVGMLKGLKLDALERTYAERVRLNPGAKSLLATMRANGAHTMLVSGG
                     FGYFTQRVAQAAGFHAERGNTLLDDGERLTGEVAAPILGREAKLQALEDAVATLKIDF
                     DETLAVGDGANDLAMIRKAGLGVAYHAKPVVAEAAGAAIHHNDLTALLYLQGYSDDEI
                     IRSD"
BASE COUNT          880 a         1549 c         1596 g          871 t
ORIGIN      
        1 tacaaaagct ttcgcgcccg tcgcgggttg ttcgtggacg atctgtatgt gcgcccggac
       61 tttcgtggac acggcctggg ccgatcgctg ctggcgcatc tggcggcgaa agcacagggc
      121 gcgggcggct ttctggaatg gcaggtgctg gactggaacg cgccgtcgat tgccttctac
      181 aaaagcctgg gcgcccaacc gatggcggag tggctcaact accggctgga tggcgaaagc
      241 ctggaaaggc ttgcctcatg agcgagattg tgctggtggt ggccatcgcg gacaacggcg
      301 tcatcggcaa ggacggcggc attccctggc atatttccga agacctgaaa cgcttcaagg
      361 cgctgaccat gggccacacc atcgtgatgg gccgcaagac ctgggacagt ttgccgaaaa
      421 agccgctgcc gggcaggatc aatgtggtgg tgacgcggca ggcggattgg cgggccgatg
      481 gcgcgcttac cgccgcgtcg ctggggcagg cgacagccgg cacctccggc acggtgatgg
      541 tgatcggcgg tgaggaaatc taccagcgcg ctttgccgat ggcctcgcgt attgaactga
      601 cggaagtgca caaggatttt gacggcgatg cgaagttcga tctggaccgc agcggctggc
      661 gcgaaaccgc gcgcgaagat catgttacgg cggacgggct gcgctacagc tacgtcacgc
      721 tgacccgcta aggatcactc gataacgatc tggggcgcgg gcttgctgac cgtttccagc
      781 gccgccgcca ctttcttggc cagctccagg aacgccaggg cttcggggcc atcgggcacc
      841 gaaacactga ccggggtgcc ggcatcggag gtttcgcgga tgcgcggcac cagcggtatc
      901 tcgcccagga agggtacgcc caggcttgca gcggtgtcgc gcgctccgcc atggccgaag
      961 atggcatggc tggaaccgca atcggggcag gtaaacatgg acatgttctc caccacgccc
     1021 aggatcggga cctgggtctt gttgaacatg acgatgccct tcctggcatc gatcagggcg
     1081 atgtcctgcg gggtggaaac gatcaccgcg cctttcagcg gcacgcgctg agcgatggtc
     1141 agttgcgcgt cgccggtgcc gggcggcatg tccagcacca gcacgtccaa gggggcccac
     1201 gccacgtcgc tcagcatttg cgacagggcg ctttgcacca tcgggccgcg ccagatcatg
     1261 gcttcgtctt ccttgaccat gaaaccgatg ctcatggtct tgaggccgtg cttttcgatc
     1321 ggcagcagag tatggccgtc actgccgggt ttttcggtga tgttcagcag gcgcggcaag
     1381 gacgggccgt aaatgtcggc atccagcagc ccgaccttca ggcccagccg cgacagcgac
     1441 agcgccaggt tcaccgcgat ggtggatttg ccgacgccgc ccttgccgct ggccacggcg
     1501 atgatgttgc gcacgccggg aataccggcg ggggccggcg gcgccttctt ggcgaccgcc
     1561 ggtttgggtg cggcatgacc gtgggcgtgg ccggcgtgcc cctcttgatg attatgatta
     1621 tgatcatggg cctggccatg gtcttcgtgc ccatgaccgt catgagaggt cagcacggcg
     1681 gtaacggact tgacgccttt cacccccagc accatcgcct cgcaaatttt gcgcaagggc
     1741 tcggactgcg gcccgcgccc ggccgcgact tccagcacaa agccgacatg gccgtccttg
     1801 accaccaggc cttggatcat gtcctgctgc accacggtgc gcccgctcac cgggtcgatc
     1861 acctggtcga gcgctttcaa tatgtcttcg cgggcgacgg tcatgggcag gggatatagc
     1921 cctcgcccat aaggaatcct agtaagaagg tgcggatccg gcggcccttg ccagcgcgcc
     1981 gcccagatcc tgcaaggggc ccaggggttg gcggcggtcg tccaaattct cggtgcgcgg
     2041 attgccggaa aagaccttgt gcaccacgcg gccatccatc accagcagga tgacatcggc
     2101 cgaccagcgg gtgctgcggg tgatgcgttc aaagcccagc acgtcgggga ggaaatgtcc
     2161 cagccgcttg ctggcggtgc ggccgggatg aaaaacatag ccggtgcaaa aggcttctgc
     2221 gcggatgcag gcctgcaccg cgggattgag ctgttcccag cgcacaccgg cggcgggcag
     2281 gaaacgctcc tcgacattga gataggacaa cacgtccaca ttggcggtgc gggcatcgaa
     2341 gcccagattg gccagatcct cggcgcgggt cattcccggt acgatctggt cgaaggcgtc
     2401 caccacttgg tcgtaggtct cgaacgggct ggcgtttgcg gccttctggt cgggcaacag
     2461 gccgccgcca caggccgaca gcagcggcag gctgcccatc gccagcagcg cgaagcacaa
     2521 cagcgagacc aatttactat gggcatccag ccttttcatg gcccctctca tgatcagcat
     2581 cattcaagcc ccatgccttg gaacctgtga aagacgtgta atggggatgg cggtgaaaaa
     2641 accgcgccga aggcgggctt ccgcctgttt gttcccgctt tccctgccta aactgacggg
     2701 cgattcctcc cctcgcgttc ccaggaacga acagatgcct gtctttcaaa gcccccctaa
     2761 tttgcgctgt gccattttgg cgctgagcct cattatgctt ggcgcggcgc ctggcgtgac
     2821 gccggcttgg gcgcggcccg ccccggattc cttcgccgac ctggcgggca agctgctgcc
     2881 cacggtggtc aacatctcca ccagccagac cttgaaggcg ccgccgcaga acgccatgcc
     2941 gcaactgccg cccggttcgc cgctggaaga tttgttcaag aatttcctgg gtcccaaacc
     3001 caacacgccg cgccatgtca cctcgctggg gtccggcttt atcatcgatg ccagcggctt
     3061 catcgtcacc aacaaccatg tgatcgaaga cagcgaccag atcaccgtgt cgctgcagga
     3121 cggtacccag ctgccggcca aggtgatcgg ccgcgatatc aagaccgatc tggcgctgct
     3181 gaaagtcacg tcgcgcaaac ccttgcccgc cacccgcttc ggcgacagcg atcatgcgcg
     3241 ggtgggcgac tgggtgatcg cgatcggcga tcccttcggc atcggctcca ccgtcaccgc
     3301 gggtatcgtg tcggcgcgca accgcaacat caatgccggg ccctatgacg atttcataca
     3361 gactgatgcc ccgatcaatc gcggcaattc gggcggcccg ttgttcaaca tggacggcga
     3421 tgtcatcggc atcaattcgg cgatcttctc gccctcgggc ggcagtgtcg gcatcggctt
     3481 cgccattccc gccaatctgg cgcgcgaggt ggtgggccag ttgcgccagt tcggcatcgc
     3541 caagcgcggc tggatcgggg tgcgcatcca gccggtgacg ccggagatcg ccgaagggct
     3601 gggcctgccc acctcgcagg gcgcattgat cgccgatgtc accaagggcg gaccggcggc
     3661 gcaggccgga ttggtcaatg gcgatctggt caccggcttt gacggcaagt tcgtgccaga
     3721 cgaccgcgcc ttgccgcgca tcgtggccga cacccccatc ggcaaaacgg tgagcatcga
     3781 ggtactgcgc aagggccgca agcagacctt gaagatcaca gtgcagaagc tggccgacga
     3841 tgccaaggtg gacaagcccg ccaaggcgcc gcccgcaccg gtcaagaacc agtccaaggt
     3901 gacgcagatg ggtctcaccc tgggggcgct ggatgcgccg gcgcgcgcga aattcaagat
     3961 cgcggcggcg gtgcagggtg tggcggtgac ggcggtggac gccggcagtg cggcggcgga
     4021 gaaaaatctg cgcgcgggcg atgtaatcgt cgaggtcggc ggccaggcgg tgaaaacccc
     4081 cgacgatgtc accaagcgcg tcgacgccga cgccaaggcc ggcaaaaagg tggcgctgat
     4141 gctgatcaac cgcgacggcg aactgcaata tctggggctg aagttaaatt agaaaggagg
     4201 ctgcacggga gtacgctttc gcgcacctca atccgatcgg atgatctcgt cgtcgctata
     4261 gccctgaaga taaagcagcg ccgtcaggtc gttgtgatgg atcgccgcgc cggccgcctc
     4321 cgccaccacc ggcttggcgt gataggcgac gcccagcccc gctttgcgga tcatcgccag
     4381 atcgttggcg ccgtcgccca ccgccagcgt ttcgtcaaaa tcgatcttta gggtggcgac
     4441 ggcgtcttcc agcgcctgca gcttggcttc gcggcccagg atgggcgcgg ccacttcgcc
     4501 ggtcagccgc tcgccgtcat ccagcaaggt gttgccgcgc tcggcatgaa agccggcggc
     4561 ctgcgccacc cgctgggtga aatagccgaa gccgccgctg accagcatgg tatgggcgcc
     4621 gttggcgcgc atggtcgcca gcagggattt ggcgccggga ttcagccgta ctcgctcggc
     4681 ataggtgcgc tccagcgcat ccagtttcag gcccttcagc atgccgacac gctgttttag
     4741 cgccgcctcg aaatccagct cgccgcgcat ggcgcgttcg gtgatggcgg cgatctcggg
     4801 cttcagtccg gccatgtcgg ccaactcgtc caggcattcg acgccgatga tggtggaatc
     4861 catgtcggcc agcagcagct tcttgcggcg cttttc
//
LOCUS       DATMDK010000415         2040 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1345129,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000415 DATMDK010000000
VERSION     DATMDK010000415.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2040)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2040)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2040
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1345129"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..594
                     /locus_tag="VNN98_08005"
     CDS             <1..594
                     /locus_tag="VNN98_08005"
                     /inference="COORDINATES: protein motif:HMM:NF013077.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitroreductase"
                     /protein_id="HWM62081.1"
                     /translation="SSDKKHPEFNHPAPATLDLLLSRRSGSAKAMMEPGPSKKQLAQI
                     LQAGARAPDHGKLFPWRFLVFEGKGRLRAGDILAEVAEAEGERDKQVEEERGRFARAP
                     LVIGVISAAREQHKIPVWEQELSAGAVCQNILIAATALGFVGNWITEWYAYHPVVKEK
                     LGLKPGERVAGFLYIGTAKDQLEERPRPEMDTIVTVF"
     gene            complement(924..1559)
                     /gene="queE"
                     /locus_tag="VNN98_08010"
     CDS             complement(924..1559)
                     /gene="queE"
                     /locus_tag="VNN98_08010"
                     /EC_number="4.3.99.3"
                     /inference="COORDINATES: protein motif:HMM:TIGR04508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="7-carboxy-7-deazaguanine synthase"
                     /protein_id="HWM62082.1"
                     /translation="MTYSVKEIYYTLQGEGAQSGRAAVFLRFAGCNLWSGLEKDRPDA
                     VCRFCDTDFVGTDGPGGGKFADAGSLARVVFSTWPESAKGKPYVVCTGGEPLLQLDKL
                     LIVALHVEGFEIGIETNGTLLPPPGIDWICVSPKADAEQKLMRGDELKLIYPQAGAAP
                     ERFAGQDFQNFFLQPMDNPDRAANTDAATRYCLEHPQWRLSLQTHKLIGIR"
     gene            complement(1556..>2040)
                     /locus_tag="VNN98_08015"
     CDS             complement(1556..>2040)
                     /locus_tag="VNN98_08015"
                     /EC_number="6.3.4.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012203190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="7-cyano-7-deazaguanine synthase"
                     /protein_id="HWM62083.1"
                     /translation="PLDTLKAIGGSALTEAIKIEMGENGLPTTFVPGRNVMFLTAAAA
                     LGYRRGIADLVGGMCETDFSGYPDCRDETVQATARALSLGLARSVTVHTPLMWIDKAA
                     TWSWAAALGGPALTDLIVEETVTCYEGDRSHRHAWGYGCGQCPACELRAAGYAKYQAA
                     "
BASE COUNT          416 a          640 c          633 g          351 t
ORIGIN      
        1 tcctccgata aaaagcaccc tgagttcaat caccccgcac ccgcaacgct ggacctcctg
       61 ctcagccgcc gctccggctc ggccaaggcg atgatggagc ccgggccgtc gaaaaagcag
      121 ctggcgcaaa tcctgcaagc cggggcgcgg gcgcccgatc acggcaagct gtttccctgg
      181 cgcttcctgg tgttcgaggg caagggccgc ctacgcgccg gcgacatatt ggccgaggtg
      241 gcagaggccg aaggcgagcg cgacaaacag gtggaagaag aacgcggccg ctttgcgcgc
      301 gcgccgctgg tgataggggt gatctcagcc gcccgcgagc agcacaagat tccggtatgg
      361 gagcaggaac tgtcggcggg cgcggtatgc cagaacatcc tgatcgccgc caccgcgctg
      421 ggctttgtcg gcaactggat tactgagtgg tatgcttatc atccggtggt gaaagaaaag
      481 ttggggctga agcctggcga acgggtggca ggcttccttt atatcggcac ggcaaaagac
      541 caactggaag aacgcccacg tcccgaaatg gataccatcg tgacggtgtt ttaagcgcct
      601 cattgtcacg gcccggggtt cgtagcgaca gcgtgcgaac gggccgccca ggtgacgcca
      661 atcgcgaatg tcagaagata aatctcagcc aattattcga cagaagggct gtcccacctg
      721 ggtggcccgc attcgcgggc catgacacct agagtggatt ccattcaacc ctaaacggcg
      781 accaagaaac cgtaagcgat aagcgcagcg gcaaaggccg cgctggacaa gacaacaggc
      841 caggaatcca tgcaaaccct ccggtgaggg ccacaaatgg ctatgtccga ctggggttca
      901 acatgcagag aacgcggaac tggtcagcgt atgccgatca gcttgtgggt ctgcagactg
      961 agtcgccatt gtggatgttc caggcagtag cgcgtcgccg catcggtgtt ggcggcgcga
     1021 tcgggattgt ccatcggttg caggaagaaa ttctggaaat cctggccggc gaaccgttcc
     1081 ggcgccgccc cggcttgcgg ataaatcagt ttcagctcgt cgccgcgcat cagcttctgc
     1141 tcggcatcgg ctttgggact gacacagatc cagtcgatgc cgggcggcgg caacagagtg
     1201 ccgttggttt cgatgccgat ctcgaaacct tccacgtgca gcgccacgat caggagcttg
     1261 tccaattgca gcagcggctc gccgccggtg cagacgacat agggcttgcc ctttgcgctt
     1321 tcaggccagg tggaaaaaac cacgcgagcc aggctcccgg catcggcgaa cttaccgccg
     1381 ccgggcccat cggtgccgac gaaatcggtg tcgcaaaaac ggcagaccgc gtcggggcga
     1441 tctttttcca acccgctcca cagattgcag ccggcaaagc gcaagaacac ggcggcgcgc
     1501 ccactctgag ctccctcgcc ctgcaaggtg taatagattt ctttgaccga ataggtcatg
     1561 cggcttgata cttcgcatag cccgcagcgc gcaattcgca ggccgggcac tggccgcagc
     1621 catagcccca ggcatgacga tggctgcggt cgccttcata acaggtgacg gtctcttcca
     1681 cgataaggtc cgtcagcgcc ggtccgccca gcgcggccgc ccaggaccag gtcgcggcct
     1741 tgtcgatcca catcagcggc gtatgcaccg tcacgctgcg cgccaggccc aggctcagcg
     1801 cccgggcggt cgcctgcacg gtttcgtcac ggcaatcggg gtaaccggaa aaatccgtct
     1861 cacacatgcc gccgaccagg tcggctatgc cgcgccggta gcccagcgcc gccgccgcgg
     1921 tgaggaacat gacattgcgt cccggtacga aggtggtcgg caagccgttc tcgcccatct
     1981 cgatctttat cgcctccgtg agagcactgc cgccgatggc cttcagcgta tccagcggca
//
LOCUS       DATMDK010000416         3360 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2705728,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000416 DATMDK010000000
VERSION     DATMDK010000416.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3360)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3360)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3360
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2705728"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..533)
                     /locus_tag="VNN98_08020"
     CDS             complement(<1..533)
                     /locus_tag="VNN98_08020"
                     /inference="COORDINATES: protein motif:HMM:NF014700.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM62084.1"
                     /translation="MKAIAATRIFDELPSMDAMLARKVTVLGSTGSIGVNTLDVIAHV
                     RKLHGQDAMPIAALTAGDNVKVLIEQAKAMKPALAVIGNEQLFGELKAGLAGTGIEVG
                     AGRLAVIDAAARDSDFVMVAIMGAAAIEPALAAIRRGVVVALANKECVVAAGAVFRDA
                     MIKSGAQILPVDSEHNA"
     gene            complement(530..1396)
                     /locus_tag="VNN98_08025"
     CDS             complement(530..1396)
                     /locus_tag="VNN98_08025"
                     /EC_number="2.7.7.41"
                     /inference="COORDINATES: protein motif:HMM:NF013327.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidate cytidylyltransferase"
                     /protein_id="HWM62085.1"
                     /translation="MSQQHSGHMIRNGSEAFLRVLFGVFLAVFAIVVVVYSAQWFAAV
                     TALVMLIAAREWHRMVRAPAQTETADRRPLYIQTAITGGAIACAVLALILRVVPVAFA
                     FLAVGAVAAFVMAQKQNDNPLWHAGGVIYLGLPALALVGLRVFPSQGALVVLGLFLIV
                     WATDTGALVFGKLIGGKKIAPRLSPGKTWAGTIGGSMTAAVVFGLYIAFFGFNAPLAA
                     LFALAFSFAAHGGDMFESLVKRRFGYKDSGGLIPGHGGMLDRMDSMFVASVVLALLVF
                     VLHLNPLFGGHA"
     gene            complement(1399..2139)
                     /locus_tag="VNN98_08030"
     CDS             complement(1399..2139)
                     /locus_tag="VNN98_08030"
                     /inference="COORDINATES: protein motif:HMM:NF011408.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016765 - transferase activity,
                     transferring alkyl or aryl (other than methyl) groups
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="isoprenyl transferase"
                     /protein_id="HWM62086.1"
                     /translation="MIVPENKPSHLPKHVAVIMDGNGRWAKKRHLPREAGHYAGMSAV
                     RETVRAACDIGLENLTLFAFSSENWKRPKTEVGALMGLFRAYFRSDMDELVERNVRMR
                     IIGHRGRVASDIQQMIQDSENRTAKNDGMNLTFAFDYGGQEEIAAAAQELARAAKDGR
                     LDPETITPELFATRLFTSALPAPDLVIRTSGEHRLSNFLLWQSAYAELLFLDTLWPDF
                     DRAVLTAALEQFAARDRRFGALDSEAVA"
     gene            complement(2139..2699)
                     /gene="frr"
                     /locus_tag="VNN98_08035"
     CDS             complement(2139..2699)
                     /gene="frr"
                     /locus_tag="VNN98_08035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020044764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0008135 - translation factor activity, RNA
                     binding [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome recycling factor"
                     /protein_id="HWM62087.1"
                     /translation="MADAYSKDELDRRMNGAIATLKSELGGLRTGRASAALLDPVKVE
                     AYGNSVPINQVGSIATPESRMITVQVWDKGLAKAVDKAIRDAGLGLNPQMDGQLLRIP
                     LPELNQERRKELSKLAAKYAEAARVSVRNVRRDGMDLLKKLEKDHKISQDDQHAKGDE
                     LQKLTDAHIKDIDAALHAKEQEIMQV"
     gene            complement(2763..>3360)
                     /gene="pyrH"
                     /locus_tag="VNN98_08040"
     CDS             complement(2763..>3360)
                     /gene="pyrH"
                     /locus_tag="VNN98_08040"
                     /EC_number="2.7.4.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020044765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0033862 - UMP kinase activity [Evidence
                     IEA];
                     GO_process: GO:0015949 - nucleobase-containing small
                     molecule interconversion [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="UMP kinase"
                     /protein_id="HWM62088.1"
                     /translation="IELGIELCLVIGGGNIFRGLSTAARGMERASADYMGMLGTVMNA
                     LALQSALERRQVQTRVMSALPISAVCEPYIRRRAVRHMEKGRVVIFGAGTGNPFFTTD
                     TAAALRAAEMACNALLKATQVDGVYSADPKKFPDAKRYDSLSYHEVLAQNLQVMDAAA
                     ISLSRENRIPILVFSLGEPGALAQVLRGEGRATIIEEK"
BASE COUNT          608 a         1123 c         1033 g          596 t
ORIGIN      
        1 atggcattgt gttcgctgtc caccggcaat atctgcgccc cggactttat cattgcgtcg
       61 cggaacaccg cgcccgccgc caccacgcat tccttgttgg ccagcgccac caccacgccg
      121 cgccggatcg cggccagcgc cggctcgatg gcggcagcgc ccatgatcgc caccatcacg
      181 aaatcgctgt cccgggcggc cgcgtcgatc acggccaggc ggccggcgcc gacttcgatg
      241 ccggtgccgg ccaggccggc cttcagttcg ccaaacagtt gttcattgcc gatcaccgcc
      301 aaggcaggtt tcatcgcctt ggcttgttcg atcaggactt tcacattgtc gccggcggtc
      361 agcgccgcga tcggcatggc atcctggcca tgaagctttc gcacatgcgc gatcacatcc
      421 agcgtgttga cgccgatcga gccggtggag cccagcacgg tgaccttgcg cgccagcatg
      481 gcatccatgg acggcagttc gtcgaaaatc ctggtggcgg caatggcttt cacgcatgcc
      541 ccccgaacag gggattgaga tgcaggacga acaccagcag cgccagcacg acgctggcca
      601 cgaacatgga atccatgcgg tccagcatgc cgccatgacc ggggatcagt ccgccggaat
      661 ccttgtagcc gaagcggcgc ttgaccaggc tttcaaacat atccccgcca tgcgccgcga
      721 aactgaaggc aagagcgaac agcgccgcca gcggcgcatt gaaaccgaaa aaggcaatgt
      781 agagtccgaa caccaccgcc gctgtcatgc tgccgccgat ggtgcccgcc caggtcttgc
      841 ccggcgacag gcgcggcgcg atcttcttgc cgccgatcag cttgccgaac accagtgcgc
      901 cggtatcggt ggcccagacg atcagaaaca ggcccagcac caccaatgcg ccctgcgagg
      961 gaaacacacg caaacccacc agcgccagcg ccggcaagcc cagataaatc accccgccgg
     1021 catgccaaag cgggttgtcg ttctgctttt gcgccatcac aaaggccgcc accgcaccta
     1081 ccgccaggaa ggcaaaagcc accggcacca cgcgcagtat cagcgccaat actgcgcagg
     1141 cgatggcgcc gccggtgatg gcggtctgga tataaagggg ccggcgatcg gcagtctcgg
     1201 tttgtgcggg cgcgcgcacc atgcggtgcc attcccgcgc cgcgatcagc atcaccaggg
     1261 ccgtgacggc agcgaaccat tgcgcgctgt acaccaccac gacaatggca aagacggcca
     1321 ggaaaacgcc gaacagcacg cgcaggaagg cttcgctgcc gttgcggatc atatgcccgg
     1381 aatgttgctg gctcatgctc acgccacggc ttccgaatcc agcgccccga agcggcggtc
     1441 gcgtgccgca aactgttcca gcgccgccgt cagcacggcg cggtcgaaat ccggccacag
     1501 cgtgtccagg aacagaagct cggcataggc cgattgccag agcaggaaat tggacagcct
     1561 gtgctcgcct gaggtgcgga tcaccaggtc gggcgcgggc agcgcgctgg tgaacaggcg
     1621 ggtggcgaac agctccgggg tgatggtctc gggatccagc cggccgtcct tggcggcgcg
     1681 cgccagttcc tgggcggcgg cagcgatctc ttcctgtccg ccatagtcga aggcgaaggt
     1741 caggttcatg ccgtcattct tggcggtgcg gttttcggaa tcctggatca tctgctggat
     1801 gtcggacgcc acccggccgc gatggccgat aatgcgcatg cgcacattgc gctccaccaa
     1861 ctcgtccatg tcgctgcgaa aataggcgcg gaacaggccc atcaaggcgc cgacttccgt
     1921 cttgggccgc ttccaattct cggatgagaa agcgaacaag gtcaggtttt ccagcccgat
     1981 gtcgcaagcc gcgcgcaccg tctcgcgcac cgcgctcatg ccggcataat gccccgcctc
     2041 gcgcggcagg tggcgcttct tcgcccagcg gccattgccg tccatgatga cggcaacgtg
     2101 tttgggcagg tgcgagggct tgttctccgg cactatcatc acacctgcat gatttcctgc
     2161 tccttggcat ggagcgcggc atcgatgtcc ttgatatggg cgtccgtcag cttctgcagc
     2221 tcgtcgccct tggcatgctg atcgtcctgg ctgatcttgt gatccttttc cagcttcttg
     2281 agcagatcca tgccgtcgcg gcgcacattg cgcaccgaca cgcgggcggc ctcggcatat
     2341 ttcgccgcca acttggaaag ttccttgcgg cgttcctgat tgagttccgg caagggaatg
     2401 cgcagaagct ggccgtccat ctgcgggttg aggcccaggc cggcgtcgcg gatcgccttg
     2461 tccaccgcct tggccagtcc cttgtcccac acctgcaccg tgatcatgcg cgattcgggc
     2521 gtggcgatgc tgccgacctg gttgatcggc acggaattgc cataggcctc gaccttgacc
     2581 gggtcgagca gcgccgcact ggcccggccg gtgcgaagcc ctcccaattc gctcttgagg
     2641 gtggcgatcg cgccgttcat gcggcggtcc aattcgtcct tgctataggc gtcagccatg
     2701 tcggttgctc catccccaaa tccccctcaa gggcaagatt accttaagac acgggacctg
     2761 cttcattttt cttcgataat ggttgcccgg ccctcgcccc ggagcacttg ggccaaagcc
     2821 cccggttcgc ctagggaaaa caccaggatc gggatgcggt tttcgcgcga cagggatatg
     2881 gcagccgcgt ccatgacctg cagattctgg gctaacacct cgtgatagct gagagaatcg
     2941 taccgcttgg cgtccgggaa cttcttggga tcggcgctat agaccccatc cacctgggtg
     3001 gccttgagca gagcgttaca ggccatttcg gccgcgcgga gcgccgctgc ggtgtcggtg
     3061 gtgaagaagg gattgccggt gccggcgccg aagatcacca cccggccctt ttccatatgg
     3121 cgcacggcgc ggcgccggat atagggctcg cagacggccg agatcggcag ggccgacatg
     3181 acccgggtct gcacctggcg ccgctcgagc gcgctctgga gggccagagc gttcatcacc
     3241 gtgcccagca tgcccatgta gtcggcgctg gcccgctcca tgccccgcgc ggcggtgctg
     3301 aggccccgaa agatattgcc gccgccgatg accaggcaca gctcgatgcc cagctcgatg
//
LOCUS       DATMDK010000417         5250 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1105366,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000417 DATMDK010000000
VERSION     DATMDK010000417.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 5250)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5250)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5250
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1105366"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..785
                     /locus_tag="VNN98_08045"
     CDS             <1..785
                     /locus_tag="VNN98_08045"
                     /inference="COORDINATES: protein motif:HMM:NF014910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="FAD-linked oxidase C-terminal domain-containing
                     protein"
                     /protein_id="HWM62089.1"
                     /translation="ASFDSVPAAGQCVAAIIGDGVVPAAMEFMDRRAAEAIEAYNQPG
                     YPAGAEAILIIDADGVEADVTYAVSRVTDIVAQCGGKTIEATDEKQRARIWSGRKAAF
                     AAMGRLAPDMLCMDGTIPRHALPQVLEEMAAMSRQYGLGFCNVFHAGDGNLHPLIVFD
                     VMKPGEFDRAEAFGADILRLCVKVGGVLTGEHGVGVEKRDLMVDMFTTAELEQQGRVK
                     CAFDGQGLFNPGKVFPTLSPCVEQGHIHVHGAQMPHPHLPRY"
     gene            785..1972
                     /locus_tag="VNN98_08050"
     CDS             785..1972
                     /locus_tag="VNN98_08050"
                     /inference="COORDINATES: protein motif:HMM:NF013714.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding protein"
                     /protein_id="HWM62090.1"
                     /translation="MSKVASESQIVEFVRAAREAKTPFEIVAGGTRRSVGKPLFDSKG
                     GDLPLLDVSGLSGIVKYEPEELILTAAPATPLAEINQVLAARNQRLGFDPADWSRLLG
                     SNGVATLAGARGTLGGAASCDASGSGRLRHGGARDSLLGFHGVNGLGESFRGGAKVVK
                     NVTGFDLPKLVCGAYGTLCVLTELTFRVYPKPQFATTLCLSDVTPDIGFTALRKIAHS
                     ALEPAGLAYLPGNMLAEAFKIEGGQGAALIKLEGAREPLEEKIALAHGLLGDAATRIE
                     GDIFPAIGCGETFADLPGDVWRVMIAPSDAPRVAKELNAEHWLGDWAGRLIWLAAPPS
                     DAARIRAIAAAAQGQAMLLRAGAESRAALGLYAPQPPALAALNRAVKAAFDPLSLFNP
                     GRL"
     gene            1972..3252
                     /gene="glcF"
                     /locus_tag="VNN98_08055"
     CDS             1972..3252
                     /gene="glcF"
                     /locus_tag="VNN98_08055"
                     /EC_number="1.1.99.14"
                     /inference="COORDINATES: protein motif:HMM:NF008434.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycolate oxidase subunit GlcF"
                     /protein_id="HWM62091.1"
                     /translation="MKYAFTPEQLADPQIGPAAGAVRACVHCGICTATCPTYVLLGDE
                     RDSPRGRIVLMKDMLEKGGAPTKEQVYHIDRCLSCLNCKTACPSSVNYQRLVDQARVH
                     IQEHYQRPLGERLLRWTIAKVMTRPALVRIGLLLARIGAPVALLLPGRLGAMARIGLS
                     AHPQGPEPKHFPKPAIVKQRIAIMPGCVQGALAPQIDGAVGRVLARRGIELVALEGAG
                     CCGALPHHMGREHDARGWAKQAITAYEQGRYDGVLITATGCSAQLKDYAHQFAGDPVW
                     EPRAARFAAAARDFAELCTPLTVTPPQPLRVAYHPACSLQNSLKLNGVGEALLQAAGF
                     IVTPFAESHLCCGSAGTYSILQPELSNQLRARKLGHIAAAEPDVLVSGNIGCLQHLAA
                     GAGKLQPILHIAELLDWAESGLKPANLELPAKSH"
     gene            3262..3831
                     /locus_tag="VNN98_08060"
     CDS             3262..3831
                     /locus_tag="VNN98_08060"
                     /inference="COORDINATES: protein motif:HMM:NF019339.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HWM62092.1"
                     /translation="MRTALVLSSLLAAGPAFAVPPRPVAPVPKEVTSEDRLLAQLQKV
                     ESAEDAHPIEEKLQSMFRVSGSPSVDLLMSRAQAALAATDNKTAKQLIDAVTAIAPNY
                     AEGWHTRAGMEQASGDDTAALVSLQKVILLNPRNFAALSELGDKLEEYGDKAGALKLY
                     RRALELDPQLEGANRKVRELTQSVEGRDI"
     gene            3884..4267
                     /locus_tag="VNN98_08065"
     CDS             3884..4267
                     /locus_tag="VNN98_08065"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM62093.1"
                     /translation="MTPVQAAPSYMPSYMIGTWFGHGQPQDKASMYIDRMRADGTWRG
                     EYRTCFKGKALDSVQAGRWSLANDMLTLKVERVDGQAAPRTDTYKMLSHDAGSQKYLS
                     LGYNFPYTPQRMADDFQMPSCELTS"
     gene            4412..4672
                     /locus_tag="VNN98_08070"
     CDS             4412..4672
                     /locus_tag="VNN98_08070"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM62094.1"
                     /translation="MAISPCNSAAAAKASDLFQKGTWWFQDGIEYVQITLSGGRIVFD
                     ETPYKILFHDGKHQTYSMPSGFVFKSSRVDANFRMPPCELVS"
     gene            complement(4831..>5250)
                     /locus_tag="VNN98_08075"
     CDS             complement(4831..>5250)
                     /locus_tag="VNN98_08075"
                     /inference="COORDINATES: protein motif:HMM:NF014886.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate kinase alpha/beta domain-containing
                     protein"
                     /protein_id="HWM62095.1"
                     /translation="ELYHSIIESQRGTPEKTTPDAIMAAVHEVTQTIEARAIVCWTKS
                     GITAMRAARERSQAPIIAPTPSIETARRLCLVWGTHSVITEDIRDFDDMVKRASQIAR
                     QEGFAQVGERIVITAGVPLGTTGATNMLRVAFVTEED"
BASE COUNT          914 a         1666 c         1701 g          969 t
ORIGIN      
        1 tggcctcgtt cgattcggtt cccgcggcag gccaatgcgt cgccgccatt atcggcgacg
       61 gtgtggtgcc ggcggcgatg gagttcatgg accggcgtgc cgccgaagcc attgaggcct
      121 acaaccagcc cggctatccg gcgggcgccg aagccatcct gatcatagat gcggatggcg
      181 tggaggccga tgtcacttat gccgtgtcgc gggtaaccga cattgtggcg caatgcggcg
      241 gtaagaccat cgaagccacc gacgagaaac agcgcgcccg catctggtcg gggcgcaagg
      301 ccgccttcgc cgccatgggc cggctggcgc ccgacatgct gtgcatggac ggcaccatcc
      361 cgcgccacgc ccttccgcag gtgctggaag agatggcggc gatgtcgcgg caatacggcc
      421 tgggcttctg caatgtcttt catgccggcg acggcaacct gcatcccctg atcgtcttcg
      481 acgtgatgaa gcccggcgag ttcgatcgtg ccgaggcctt cggcgccgac atcttgcgct
      541 tgtgcgtcaa ggtcggtggc gtgctgaccg gcgaacatgg cgtgggggtg gaaaagcgcg
      601 acctgatggt cgacatgttc accacggccg aactggagca gcaggggcgg gtgaaatgcg
      661 ccttcgacgg ccagggcctg ttcaatcccg gcaaggtgtt tcccactttg tcgccctgtg
      721 tcgagcaggg tcatattcat gtccatggcg cacaaatgcc gcatccgcat ttgccgcgct
      781 actgatgagc aaagtcgcaa gcgaatccca gattgtggaa tttgtgcgcg ccgcgcgcga
      841 agccaagacg ccgttcgaga tcgtggcggg cggcacacgg cgttctgtgg gaaaacccct
      901 ctttgattcg aaggggggcg atctgccgct gctggacgtg tcgggcctgt ctggcatcgt
      961 caaatatgag ccggaagaac tgatcctcac cgccgcgccg gccacaccgc tggccgagat
     1021 caatcaggtg ctggcggcaa ggaaccagcg cctgggcttc gatcccgccg actggtcgcg
     1081 gctgctgggc tccaacggcg tggcgacatt ggcgggcgca cgcggcacct tgggcggtgc
     1141 cgcgtcgtgc gacgcttcgg gctcgggccg tttgcgccat ggcggggcgc gggattctct
     1201 gctgggcttt catggggtta acggactggg tgaaagcttt cgcggcggcg ccaaagtcgt
     1261 caagaacgtc actggctttg atctgcccaa gctggtctgc ggcgcctatg gcaccttgtg
     1321 tgtgctgacg gagctgacct tccgcgtcta tcccaagccg caattcgcga ccacgctttg
     1381 tctttccgat gtgacgccgg acatcggttt caccgccttg cgcaagatcg cgcatagtgc
     1441 gctggagccg gcgggcctgg cctatctgcc cggcaatatg ctggccgaag cctttaagat
     1501 tgaagggggg cagggcgcgg cactgatcaa gctggaaggc gcacgcgaac ccctggaaga
     1561 aaagatcgca ttggcgcatg ggttgttggg cgacgctgct acccgcatcg aaggcgacat
     1621 atttcccgcc atcggttgcg gtgagacatt cgccgatctg ccgggcgatg tgtggcgggt
     1681 gatgatcgcg ccctccgacg cgccgcgggt ggccaaggaa ctgaatgccg aacattggct
     1741 gggcgattgg gccggccggt tgatctggct ggcggcgccg ccgtccgatg cggcgcgcat
     1801 tcgcgctatc gcggcggccg cgcaaggcca ggccatgctg ctgcgtgccg gcgccgaaag
     1861 ccgtgccgcg ctgggcctgt atgcgcccca gccgccggcg ctggcggcat tgaatcgtgc
     1921 ggtgaaagcc gcgtttgacc ccttgtctct cttcaatccg gggcgcctct gatgaaatac
     1981 gccttcacac ccgaacaatt ggccgatccg caaatcggtc ccgcggcggg cgcggtgcgc
     2041 gcttgtgtcc attgcggtat ctgcacggcc acttgcccga cttatgtgct cttgggcgat
     2101 gagcgcgaca gcccgcgcgg ccgcatcgtg ctgatgaagg acatgctgga aaagggcggg
     2161 gcgcccacca aagagcaggt ctatcacatc gaccgctgcc tctcctgcct caactgcaag
     2221 acggcctgtc cctccagcgt caattaccag cggctggtgg accaggcgcg ggtgcatatc
     2281 caggaacatt accagcgccc gctgggcgag cgcctgctgc gctggaccat cgccaaggtg
     2341 atgacgcggc ccgctttggt gcgtatcggg ttattgctgg ccaggatcgg cgcgcccgtc
     2401 gccctactgc tgccgggcag gctgggcgcc atggcgcgca tcgggctttc cgcccacccg
     2461 cagggaccgg agccgaaaca ctttcccaag cccgccatcg tcaagcagcg catcgccatc
     2521 atgccgggct gtgtgcaggg cgcgctggcg ccgcagatcg acggcgcggt gggccgggtg
     2581 ctggcgcggc gcggcatcga attggtggcg ctggagggcg cgggctgctg cggagccttg
     2641 ccgcatcaca tgggccgcga acacgacgcg cgaggctggg ccaaacaggc gatcacggct
     2701 tacgaacagg gccgctatga cggcgtgctg atcaccgcca ccggctgttc cgcccagctc
     2761 aaggattatg cccaccagtt cgccggcgat ccggtgtggg aaccgcgcgc cgccagattc
     2821 gccgccgcgg cccgtgactt tgccgaactt tgcaccccgc tgaccgtgac cccgccgcag
     2881 ccgctgcgcg tcgcctatca tcccgcctgt tccttgcaga acagtctgaa gctgaacggg
     2941 gtgggcgagg cgctgctgca ggccgccggg ttcattgtca cgccctttgc ggaaagccac
     3001 ctgtgctgcg gctcggccgg gacctattcc atcctccagc cggagctttc caaccagttg
     3061 cgcgcccgca agctcggcca tatcgccgcc gccgaaccgg atgtgctggt cagcggcaat
     3121 atcggctgcc tgcagcatct ggcggcgggg gcggggaaac tccagcccat cctgcatatc
     3181 gcggaactgc tggactgggc cgagagcggc ctgaaaccgg ccaatctgga attacccgca
     3241 aagtcccact agactgcagc aatgcgcacc gcgcttgtcc tttcttcgct gcttgccgcc
     3301 ggaccggctt tcgccgtgcc gccgcggccg gtcgcgcccg tgcccaaaga ggtcaccagc
     3361 gaggaccgcc ttttggccca gcttcagaag gtagaaagcg cggaagacgc tcatcccatt
     3421 gaagaaaagc ttcagtccat gttccgcgtc tccggcagtc ccagcgtcga tctgctgatg
     3481 tcccgcgccc aggcggccct ggcggccact gacaacaaga cggccaaaca gctgatcgat
     3541 gcggtgaccg ctatcgcgcc caactatgcc gaaggctggc acacccgcgc cggcatggaa
     3601 caggcgtcgg gcgacgacac cgcagccctg gtgtctctgc agaaagtcat cctgctcaat
     3661 ccgcgcaact tcgccgccct cagcgagttg ggcgacaagc tggaagaata tggcgacaag
     3721 gccggagcgc tgaagctcta ccgccgcgcc ttggagctgg acccgcagct ggaaggcgcc
     3781 aaccgcaagg tgcgcgaact gacccagagc gtcgaaggcc gcgatatctg atccgatgcg
     3841 ggcggcagga ctctttattc acctcctggt cattctcctg ctgatgacgc ccgtacaggc
     3901 tgcgccgtct tacatgccct cttatatgat tggcacctgg ttcgggcatg gccagccgca
     3961 ggacaaggca tcgatgtata tcgaccgcat gcgcgccgat ggcacctggc gcggcgaata
     4021 ccgcacctgc ttcaaaggca aggcgctgga ttcggttcag gccggccgct ggtcgctggc
     4081 gaacgatatg ctcaccctca aagtggaaag ggtggacggc caggctgcgc cccgcaccga
     4141 cacctacaag atgctgtcgc acgatgctgg gtcgcagaaa tatctcagcc tgggatataa
     4201 tttcccctac acgccgcagc ggatggcgga cgatttccag atgccgtcct gcgaattgac
     4261 cagctgatga tccgggcggt cgttctgctt gtgctgctgg cgacacaagc cgctggcgct
     4321 gcgcagcatc cggctttcct gatcggccat tggttcggcc agggcgagcc ggacgaccgc
     4381 agcgagatgt ggctgggaaa tgcttcggcc aatggcgatt tcgccgtgca attccgcagc
     4441 tgccgcaaag gccagcgatc tttttcagaa aggcacctgg tggttccagg acggcatcga
     4501 atatgtccag atcacactgt caggcggacg gatcgtgttt gacgaaacgc cgtacaagat
     4561 ccttttccat gacggaaaac accagaccta cagcatgccg tccggctttg tgttcaaatc
     4621 cagccgggtg gacgcgaatt tccgcatgcc gccttgcgag ttggtgagct agactcgttt
     4681 cggtttggag taattaacgt ccaaaaactc gtcatcgccc gctttatgcg ggcgatccaa
     4741 tttgtttcgg caagaaaaat ggatcacccg gacccttcgc aaaagctcag ggccgggtga
     4801 tgacagaatt acacccagtc cgaaacggtc ctaatcttcc tcagtcacga acgccacccg
     4861 cagcatgttg gtggcgccgg tggtgcccag gggaaccccg gcggtgatga cgatgcgctc
     4921 gcccacctgc gcaaaacctt cctggcgtgc gatctggctg gcgcgtttga ccatatcgtc
     4981 aaagtcgcga atgtcctcgg tgatgacgct gtgggtgccc cagaccaggc acaaccgccg
     5041 cgcggtctcg atgctggggg tgggcgcgat gatcggcgcc tggctgcgtt cgcgcgccgc
     5101 gcgcatggca gtgatgcccg atttggtcca gcacacaatg gcgcgcgcct cgatggtctg
     5161 ggtgacttca tgcactgccg ccatgatggc gtcgggcgtg gtcttttccg gcgtgccgcg
     5221 ctgggattcg atgatggagt gatacagctc
//
LOCUS       DATMDK010000418         3133 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2258204,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000418 DATMDK010000000
VERSION     DATMDK010000418.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3133)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3133)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3133
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2258204"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..709)
                     /locus_tag="VNN98_08080"
     CDS             complement(<1..709)
                     /locus_tag="VNN98_08080"
                     /inference="COORDINATES: protein motif:HMM:NF012742.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000976 - transcription cis-regulatory
                     region binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA];
                     GO_process: GO:0045892 - negative regulation of
                     DNA-templated transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HWM62096.1"
                     /translation="MVKKNGRRSGKVVTIHDVARHAGVSPMTVSRVINSETNVREATR
                     ARVAASVKALRYSPNQAARSLASAGAVHLGILYSNPSVAYLSEFLLGSLQQSSLSGCQ
                     LVIEQYEGVENEREAIQRLVKGGIDGVILPAPLCDSAQALKAVAAAGIPAVLVASGRP
                     APDLCAVSINDFEAARAMTRHLLELGHRRIGFINGHPNQTASGQRFRGYIEGMTKAGL
                     SVGTDQVAQGYFTYRSGL"
     gene            complement(756..1823)
                     /locus_tag="VNN98_08085"
     CDS             complement(756..1823)
                     /locus_tag="VNN98_08085"
                     /inference="COORDINATES: protein motif:HMM:NF012742.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HWM62097.1"
                     /translation="MTRKSTRRSGSVVTIHDVARHAGVSPMTVSRVINSESNVRDETR
                     AKVTASIKTLRYSPNLAARSLASADTVHIGILYANSTAAYLSELLLGSLEQSSLMGCQ
                     LVLEQCQDLESERKAVQRLIAGGVDGVILPAPLCDSEDALKTVASAGIPAVLVTSGRP
                     APGFSAVSINDFEAAREMTRHLLSLGHRRIGFINGHPGHSASGQRFRGYMEGMTEAGL
                     AVGADQVAQGFFTYRSGLEAAERLLTNSFNPTAIFASNDDMAAATMAITHRKGLDVPR
                     DIAIAGFDDTPLATMIWPELTTVRRPISNMAREAVRLLVEQIRAKRSGVPQPVVHKLL
                     NFTLVKRESTAAQVSKRRAKS"
     gene            1950..2981
                     /locus_tag="VNN98_08090"
     CDS             1950..2981
                     /locus_tag="VNN98_08090"
                     /EC_number="5.1.3.-"
                     /inference="COORDINATES: protein motif:HMM:NF008277.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016857 - racemase and epimerase activity,
                     acting on carbohydrates and derivatives [Evidence IEA];
                     GO_function: GO:0030246 - carbohydrate binding [Evidence
                     IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldose epimerase family protein"
                     /protein_id="HWM62098.1"
                     /translation="MARTLYGTKSDGTPVHAFMLVSGALSARVLDMGGTITAITVPGR
                     DGPARNVVLGLRDLAAYEASGWWNCLIGRYANRLKNGVTLAGRHYPLAQDANGLTLHG
                     GRGQSWGARLWQVVQDSDTALTLRLVSPDGDQGFPGTVTAQVTYTVTQDALRLDYTAS
                     TDAPSVINLTNHLYFNLAGFGPVTQQMLQLNADGVTPTDPQQIPTGDIIDVAGTAFDF
                     REARPIGARVDSDEPQMAIARGYDHNFVLNKSAPGALELAARIEDPQSGVVLELSTTE
                     PGIQVYSTNNVKPGQFNAAGREIQKRDGLALETQHFPDSPNRPGFPSTLLMPGETFRS
                     TTIFRFPAR"
BASE COUNT          571 a         1014 c         1004 g          544 t
ORIGIN      
        1 ccaggccgga gcgataggta aaatagcctt gcgccacctg atcggtgccg acggagagtc
       61 ccgccttggt catgccttcg atatagccgc gaaaccgctg gccgctggcg gtctggttgg
      121 gatggccgtt gatgaaaccg atgcggcgat gccccaactc caaaagatgc cgcgtcatgg
      181 cgcgcgcggc ttcgaaatcg ttgatgctga cggcgcaaag atccggcgcc ggacgccccg
      241 acgccaccag cacagcggga atgccggcag cggccaccgc cttcagcgct tgcgctgaat
      301 cgcagagcgg cgcgggcagg atcacgccgt caatgccgcc cttgaccagg cgctggatgg
      361 cctcgcgctc gttctccacg ccttcgtatt gctcgatcac cagctggcag ccgctgagac
      421 tggattgttg caggctgccc agcaggaact cgctcagata ggcaacactg ggattggaat
      481 agagaatgcc cagatgcacg gcgccggcgc tggccaggct gcgcgccgcc tgattgggcg
      541 aatagcgcag cgccttgacc gacgccgcca cccgcgctcg cgtagcttcc cgcacattgg
      601 tttcggaatt gatcacgcgc gacaccgtca tgggcgaaac gccggcatgg cgcgccacat
      661 cgtggatggt gacgactttg ccgctgcggc ggccgttctt cttgaccaag aaaccctact
      721 ccttgcgcgt tagcacagac ggcgcagcgg cggcatcagg actttgccct gcgctttgaa
      781 acctgggcgg cggtggattc gcgcttgacc agggtgaagt tgagcaactt gtgtaccacc
      841 ggctggggca caccggaacg cttggcgcgg atctgctcga ccaacagccg caccgcctcg
      901 cgcgccatgt tggagatcgg gcggcgcacc gtggtcagtt ccggccagat catggtggcc
      961 aagggcgtgt cgtcgaagcc ggcgatggcg atgtcgcggg gaacgtccag ccccttgcga
     1021 tgcgtgatcg ccatggtggc ggcggccatg tcgtcgttgc tggcgaagat ggcggtggga
     1081 ttgaagctgt tggtcagcag ccgttccgcc gcctccaggc ccgagcgata agtgaagaag
     1141 ccctgcgcca cctgatcggc gccaaccgcc agccccgctt cggtcatgcc ttccatataa
     1201 ccgcgaaagc gctggcccga ggcgctgtgg ccgggatggc cattgataaa gccgatgcgg
     1261 cgatgcccca gcgacaacaa atgccgcgtc atctcccgcg ccgcctcgaa atcgttgatg
     1321 gagacggcgg agaagcccgg cgcggggcgt cccgaggtca ccagcaccgc cggaattccc
     1381 gccgacgcca ccgtcttcag cgcgtcctcg gaatcgcaca agggcgcagg caggatcacc
     1441 ccgtccacac cgcccgcgat caggcgctgc accgccttgc gctcgctttc caggtcctgg
     1501 cattgctcca gcaccagctg gcaacccatg aggctggatt gctccaggct gcccagcaac
     1561 aattcgctga gataggcggc ggtggaattg gcgtaaagga tgccgatatg caccgtgtcg
     1621 gcgctggcca ggctgcgggc ggcgagattg ggcgaatagc gcagcgtctt gatcgaagcg
     1681 gtgaccttgg cgcgggtctc gtcgcgcaca ttgctttcgg aattgatcac gcgcgacacc
     1741 gtcatgggcg aaacgccggc atggcgcgcc acgtcatgga tagtgacaac actgccgctg
     1801 cggcgggtgc ttttcctggt caaattcccc tcccgatggc ctgtcctagc aaaagcggcg
     1861 gcaaatggac atgtggctta tgggcggccc gattgactgt ccgtatgccc cggaatatcg
     1921 gttttccctg atttttcgaa aatttcggca tggcgcggac actctatggc accaaaagcg
     1981 acggtacgcc ggtccatgca tttatgctcg tctccggggc gctgagcgcg cgcgtcctgg
     2041 atatgggcgg caccatcacc gccatcacgg tccccgggcg cgatggacct gcgcgcaacg
     2101 tggtgctggg cctgagggat ctcgccgcct atgaagccag cggctggtgg aactgcctga
     2161 tcgggcgtta tgccaaccgg ctgaagaatg gcgttaccct ggcggggcgg cactatcccc
     2221 tggcgcagga cgcgaatggc ctgaccttgc atggcgggcg cggccagtcc tggggcgcgc
     2281 gcctgtggca ggtggtgcag gacagcgaca cggcgctgac cttaaggctg gtcagccccg
     2341 acggcgacca gggcttcccc gggactgtaa cggcgcaggt gacctatacc gtgacgcagg
     2401 acgcactgcg gctggactat accgccagca ccgacgcgcc cagcgtgatc aacctcacca
     2461 atcaccttta tttcaacctg gcgggctttg gccccgtgac gcagcaaatg ctgcagttga
     2521 acgccgacgg cgtcacgccc accgacccgc agcagattcc caccggcgac atcatcgatg
     2581 tggcgggaac ggcgttcgat ttccgggagg cccgccccat cggggcgcgg gtggacagcg
     2641 acgagccgca aatggccatc gcgcgcggct atgaccacaa tttcgtgctg aataaaagcg
     2701 cgccgggagc gctggaactg gcggcgcgga tagaagatcc ccaaagcggc gtggtgctgg
     2761 aactgtccac caccgagccg gggatacagg tctattccac caacaatgtg aagcccggcc
     2821 agttcaatgc ggcgggccgg gagatccaga agcgcgacgg cctggcattg gagacccagc
     2881 acttccccga cagtcccaac cggcctggct tcccctccac tctgctcatg cccggcgaga
     2941 ccttccggtc caccacgatc ttccgctttc ccgcacgctg aggagccctt taccgcacgg
     3001 ctctggtaac gataccgtgg acaaaatacg gggataccaa aggcatgcgc gccatctatc
     3061 tgctgaccat gctgtttttc ggtctcgcat cggccgatgc tcatgcggcc atatcggtac
     3121 agccttgggg cgt
//
LOCUS       DATMDK010000419         2220 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_880720,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000419 DATMDK010000000
VERSION     DATMDK010000419.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2220)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2220)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2220
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_880720"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1288)
                     /locus_tag="VNN98_08095"
     CDS             complement(<1..1288)
                     /locus_tag="VNN98_08095"
                     /inference="COORDINATES: protein motif:HMM:NF027890.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyD family efflux transporter periplasmic
                     adaptor subunit"
                     /protein_id="HWM62099.1"
                     /translation="MFLALPLRLYTRAMAHVMDRPLTLDWWRKPRARAAFMGGGAALA
                     VLLLIALLWGARERSFSISASAVTIATVGNDVFHDFVPLRGTVVPKDTIYLDALEGGQ
                     VEKVLAQAGDQVVQGQPLVTFRNAQLQLDVLNNEGRLVESITQLQSFETQLEANRVGN
                     AKTLADIHFNIASLEHTAARYDPLKAAGAISSKDVEAVHDQLDHYRALLPLQVETNKR
                     QEALRLAQLPGLQSELLGLKKSLQVTRDKLEDLTVKAPVTGRITALDLKIGENRNRGE
                     RLAEIVPPTGFKIAADIDEYYLARTRAGQTADVELNGKTYRLKLARVYPQVKGGIFTA
                     DFFFQDAMPADLTTGAAAEGKLTLGGDRQAVILPAGPFLEASGGDYVFVVDGGSAHRR
                     RVKLGRRNVMQVEVLSGLKPGERVITSDYAGYDKIDR"
     gene            1391..1933
                     /locus_tag="VNN98_08100"
     CDS             1391..1933
                     /locus_tag="VNN98_08100"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HWM62100.1"
                     /translation="MEMLSLLIADDDADVRRAAQLALAAQAATIQTAATLAEMEGQLT
                     KGAFDVVLLDMNFALGEHHGRDGLDGLAHAKTIDPTLSIVLMTAFGAVSLAVEALKRG
                     AADFILKPWRNEALAAAVQTAAAQTREKRAGESLELDGIERSTIEKALHRHDGNIAQA
                     AIALGLSRPALYRRMSKYGL"
     gene            1923..>2220
                     /locus_tag="VNN98_08105"
     CDS             1923..>2220
                     /locus_tag="VNN98_08105"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM62101.1"
                     /translation="MASDAAARPPLLPIAWRVALVLGLALLIAHLLATTQYYATIFIL
                     ALLITGLVFGAARLLLQSQSAADSIAANRVIARLQLDQKQAAKTQDHLQALLDTV"
BASE COUNT          393 a          733 c          692 g          402 t
ORIGIN      
        1 tgcggtcaat cttgtcgtag ccggcatagt cggacgttat gacgcgctcg ccaggcttca
       61 ggccggagag aacctccacc tgcatcacat tgcggcggcc cagctttacg cggcggcgat
      121 gggcgctgcc gccgtccacc acaaaaacat aatcgccgcc tgaggcctcc aggaacggcc
      181 ccgccggcag gatcacagct tgacggtcgc cgcccagagt gagcttgccc tccgccgccg
      241 cgccggtggt gagatcggcc ggcatcgcat cctggaaaaa gaaatcggcg gtaaagatgc
      301 cgcccttcac ctggggatag acgcgcgcca gcttcagccg gtaggtcttg ccgttcaact
      361 ccacatcggc ggtctgcccg gcgcgggtgc gggccagata atattcgtca atgtcggcgg
      421 cgatcttgaa gccggtgggc ggcacgattt ccgccagcct ttcgccgcga ttgcggttct
      481 cgccgatctt caaatccagc gccgtgatcc gcccggtaac gggggccttc accgtcaagt
      541 cttccagctt gtcgcgcgtc acctgcaggc ttttcttcaa tcctagtagt tccgattgca
      601 gccccggcaa ctgggccagg cgcagcgctt cctgccgctt gttggtctcg acctgcagcg
      661 gcagcagggc gcgatagtga tccagttggt cgtgcactgc ttccacatcc ttgctggaaa
      721 tcgcgcccgc cgccttcagc ggatcgtagc gcgcggcggt gtgctccagg ctggcgatat
      781 tgaagtggat gtcggccaga gtcttggcat tgccgacgcg gttggcctcc aactgggttt
      841 cgaagctttg cagttgggtg atggattcca ccagccggcc ttcattgttc agcacatcca
      901 gctgcagttg cgcattgcgg aaagtaacca gcggctggcc ttgcaccacc tggtcgccgg
      961 cctgggccag aaccttttcc acctggccgc cttccagcgc atccagatag atcgtgtcct
     1021 tgggcaccac cgtgccgcgc agcggcacaa aatcgtggaa cacgtcattg ccgaccgtgg
     1081 cgatggtgac ggcggacgcc gagatgctga aactgcgttc gcgcgcgccc cacagcaggg
     1141 cgatcagcag cagcaccgcc agcgccgcgc cgccgcccat gaacgccgcg cgggcgcgcg
     1201 gcttgcgcca ccagtccagt gtcagcggcc tgtccatcac atgcgccatg gccctagtgt
     1261 aaagccgcaa gggcaaagcc agaaacatgg cgcgtcaaag acttagccat gacagcgccg
     1321 ggagacaggc gcgcaaatgt ccggaaacgg acagcttgtg cgggcagcgg ggattgctag
     1381 gcttgccgcg atggaaatgc tttccctgct gatcgccgat gacgatgccg atgtgcgccg
     1441 cgccgctcaa ttggcgttgg cggcgcaggc cgcgaccatc caaaccgcgg ccacgctggc
     1501 ggaaatggag ggccagctga ccaagggcgc ctttgatgtc gtcctgctgg acatgaattt
     1561 cgcgctgggt gaacaccatg gccgcgacgg gctcgacggg ctggcgcatg cgaaaaccat
     1621 cgaccccacc ttatccatcg tgctgatgac cgccttcggc gcggtgtcgc ttgcggtgga
     1681 ggcgctgaaa cgcggcgccg ccgatttcat tctcaagccc tggcgcaacg aggcgctggc
     1741 cgcagccgtg caaaccgcgg cggcgcaaac gcgcgagaaa cgcgccggcg aatccttgga
     1801 actggacggc atcgagcgtt cgaccatcga aaaagccttg caccgccatg acggcaacat
     1861 tgcccaggcc gctatcgccc tgggattgtc ccgccccgcc ctttaccgcc gcatgagcaa
     1921 atatggcctc tgacgccgcc gcgcgcccgc cgttgctgcc catcgcctgg cgcgtggccc
     1981 tggtgttggg cctggccttg ctcatcgcgc atcttctggc gacgacacaa tattatgcca
     2041 cgatcttcat tctggcattg ctgatcaccg ggctggtgtt cggcgcggcg cggctgttgc
     2101 tgcaaagcca gagcgccgcc gatagtatcg ccgccaaccg cgtgatcgcg cggctgcagc
     2161 tggatcagaa acaggcggca aagacgcagg atcatctgca agccctgctc gatacggtcg
//
LOCUS       DATMDK010000420         3965 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1348259,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000420 DATMDK010000000
VERSION     DATMDK010000420.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3965)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3965)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3965
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1348259"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..805)
                     /locus_tag="VNN98_08110"
     CDS             complement(<1..805)
                     /locus_tag="VNN98_08110"
                     /inference="COORDINATES: protein motif:HMM:NF012363.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxylesterase family protein"
                     /protein_id="HWM62102.1"
                     /translation="MNPIPGDPITIESGRLSGTLLDSGVKAYFGVPFAAPPVRELRWH
                     EPMPVKPWKGIYNADTKITNCTIPLRATTLNHYFGELKSSEDCLYMNIWVPPGAKPSD
                     HLPVVVWIHGGGFQEGSINFDVYSGEPLAKKGVIFVGISYRVNIFGNLAHPELTRESG
                     HNASGNYGLMDQMYGLRWLQRNITAFGGDPANVTVVGQSAGAMALDLLESSPMAHGLY
                     AHLIGLSGGYHGATSPHLDTLTQTEALGARLQQAMKAKDITQMRTIPADQ"
     gene            1017..2876
                     /locus_tag="VNN98_08115"
     CDS             1017..2876
                     /locus_tag="VNN98_08115"
                     /EC_number="1.1.2.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR03075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-dependent dehydrogenase, methanol/ethanol
                     family"
                     /protein_id="HWM62103.1"
                     /translation="MAFHKILFDAALLCGAALPALSAAPRGDAAPSNKSFTGATANLA
                     PGDAPGQWTRQARDYANTRYSPLTQINKKNVAHLRVAWSFSDGQMYGHEGAPLVVGDT
                     MYLVTPYPNIAYALDLSKTGAPIKWVFLPNPDPRAIGEACCDKVLRGWAYADGKLIYN
                     LLDDHTVAVDAQTGKEVWRVLLDDVSKGPTMTQAAFVVGDKVYVGSSGGELGTNGWFQ
                     ALDVKDGHTVWKAFTNGPDSGALIGPDFQPFYPWMKGKDLGVSTWPKEAWKQGASAPW
                     GWVSYDPDLNLVYYGTSNPGPRVPSQRPGLNLWSSAVFARDASTGAAKWAYQFTPHDE
                     WDYDGVNENVLLEIPWKGTKRKVMVHFNRNGFAYTIDRTNGEVLVAEPFGLQNWAKKI
                     DLATGMPIVNDAAHPIVEKKVENICPPDIGVKNWNPSAFSPRTGLLYAGVFNSCMDLT
                     NHEVKYIPGSPYDGMEMVRKAGPGGSWGEFIAWDPVKGKRVWSVKENLYVWSGAVATG
                     SDLIFYGTMDGWFRAVDARSGKVLWSQKLGSGITAAPMTFLGPDKRQYVAVYTGVGGG
                     AGVLRREKGYMPGGNTLYVFSVDGAGIGLGASQLVSHAQAAAPVSVPPAAAHN"
     gene            2895..3236
                     /locus_tag="VNN98_08120"
     CDS             2895..3236
                     /locus_tag="VNN98_08120"
                     /inference="COORDINATES: protein motif:HMM:NF024834.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HWM62104.1"
                     /translation="MKRVVFILAMMTARPAFAQVTADTANPLAGNADATEAGHALFGK
                     MNCAGCHAYDLTGGMGPDLTDANWLYGGKPGEIFHTIAEGTPRGMPAWKDKLTPDEIW
                     QLVTYIQSKHQ"
     gene            complement(3208..3606)
                     /locus_tag="VNN98_08125"
     CDS             complement(3208..3606)
                     /locus_tag="VNN98_08125"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM62105.1"
                     /translation="MCHLCLAAAFVAFSSLAAQAAEITVYAPNIVNGPLQKLADAWTA
                     ETGNKVIFAGFNVGHIRTALGKDDPGDVLVAPTGGLAKGMPRNWATPFFAKPSTGPSA
                     VTTGAACAAMVMAQKNARASFFIGACSEYR"
     gene            3737..>3965
                     /locus_tag="VNN98_08130"
     CDS             3737..>3965
                     /locus_tag="VNN98_08130"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM62106.1"
                     /translation="MAENTALDTTQRDALLLGAGGLLALAPFETPAFAMTGDMVGLPW
                     ANNAMRWAQVAFTEENPPSYDPDFWFDLFKKT"
BASE COUNT          789 a         1161 c         1255 g          760 t
ORIGIN      
        1 tttggtcggc gggaatggtg cgcatctggg tgatatcctt ggccttcatc gcttgctgta
       61 accgcgcgcc aagcgcctcg gtctgcgtca gcgtgtccag atgcggactg gtagcgccgt
      121 gatagccgcc cgacaggccg atcagatggg cgtagaggcc atgcgccata ggtgaggatt
      181 ccagaagatc gagcgccatg gcgccggccg actggcccac caccgtgaca ttggccggat
      241 cgccgccgaa ggccgtgatg ttgcgctgga gccagcgcaa tccgtacatc tgatccatca
      301 gcccgtaatt gccggaggcg ttatgaccgg attcccgggt cagttcggga tgggccagat
      361 tgccaaagat atttacccga taagagatgc cgacaaagat cacgcccttc ttcgccagcg
      421 gttcgccgct atagacgtcg aagttgatcg aaccttcctg aaagccgccg ccatgaatcc
      481 acaccaccac cggcaggtga tcgctgggct tggcgccggg cggcacccag atgttcatgt
      541 aaagacagtc ttcgctggat ttcagttcgc cgaaataatg gttcagcgtg gtggcgcgca
      601 gcgggatggt gcagttggtg atcttggtgt cggcattata gatgcccttc cagggcttga
      661 ccggcatggg ctcatgccag cgcagctcgc gcactggcgg cgcagcgaag ggcacgccga
      721 aataggcttt gacgcccgag tccagcaagg tgcccgacag cctgccgctt tcgatagtga
      781 tggggtcgcc ggggatcggg ttcatcactc cggcatgcgt agcggttgcc gccagcaacg
      841 cgagtgcagt gcaacaaaca aaggcccgga aacgtctcat tcgttcctcc gaattcggtc
      901 gttgttgtaa gtcaattttc ctgtccttgc acggcttttg gcaccgccct aggctttcaa
      961 aaatagaaca ggagcgtccg cgagagcggg agcgaccttt taaaagaggg gatggaatgg
     1021 cttttcacaa aatcctgttt gatgcagcgc tgctgtgcgg cgcggcgctt cccgctctga
     1081 gtgccgcccc gcgcggcgac gccgcgccat cgaacaagtc gtttacgggc gcaacagcga
     1141 atctcgcgcc gggcgatgcg ccgggacaat ggacccgcca ggcgcgcgac tatgccaata
     1201 cccgctacag cccgctgacc cagatcaaca agaaaaatgt cgcgcacctg cgcgttgcct
     1261 ggagtttttc cgatggccag atgtacggcc atgaaggcgc gccgctggtg gtgggcgata
     1321 ccatgtatct ggtgacacct tatcccaata tcgcctatgc acttgatctg tccaagaccg
     1381 gcgcgccgat caaatgggtg ttcctgccca atcccgatcc tcgcgccatc ggcgaagcct
     1441 gttgcgacaa ggtgctgcgc ggttgggcct atgccgacgg caagctgatc tacaatctgc
     1501 tggacgatca caccgtggcg gtggatgcgc agaccggcaa ggaagtgtgg cgggtgttgc
     1561 tggacgatgt cagcaagggc ccgaccatga cccaggcggc cttcgtggtc ggtgacaagg
     1621 tctatgtcgg cagcagcggc ggcgagttgg gcaccaatgg ctggttccag gcgctggatg
     1681 tgaaggacgg ccacaccgtg tggaaggcct tcaccaacgg cccggattcc ggcgcgctga
     1741 tcggcccgga tttccagccc ttctatccct ggatgaaggg caaggatctg ggtgtcagca
     1801 cctggcccaa ggaggcgtgg aaacagggcg ccagcgcgcc ctggggctgg gtgtcttatg
     1861 atcccgacct gaacctcgtt tattacggca cctccaatcc cggtccacgc gtgccgtcgc
     1921 agcgccctgg attgaatctg tggagctcgg cagtgttcgc gcgcgatgcc agtaccggcg
     1981 cggcgaaatg ggcctatcag ttcaccccgc atgacgaatg ggattatgac ggcgtcaacg
     2041 agaatgtgct gctggaaatt ccctggaaag ggaccaagcg caaggtgatg gtgcatttca
     2101 accgcaacgg ttttgcctac accatcgacc gcaccaatgg cgaagtgctg gtggccgagc
     2161 ctttcggttt gcagaattgg gccaagaaga tcgatctggc caccggcatg cccatcgtca
     2221 atgacgcggc ccatcccatt gtggaaaaga aggtggagaa tatctgtccg cccgacatcg
     2281 gggtgaagaa ctggaatccg tcggccttct caccgcgcac cgggctgctc tatgccggcg
     2341 tgttcaacag ctgcatggac ctgaccaacc acgaagtgaa atatattccc ggcagcccct
     2401 atgacggcat ggagatggtg cgcaaggccg ggcccggcgg cagctggggc gagttcatcg
     2461 cctgggaccc cgtgaagggc aagcgcgtct ggagcgtgaa agagaatctg tatgtgtgga
     2521 gcggggcggt ggcgaccggc tctgacctga tattctacgg cacgatggac ggctggtttc
     2581 gcgccgtgga tgcgcgcagc ggcaaggtct tgtggtcgca gaagctgggc tcgggtatca
     2641 ccgccgcgcc catgaccttc ctgggccccg acaagcgcca gtatgtggcg gtctataccg
     2701 gggtcggcgg cggcgccggt gtgctgcggc gggaaaaggg ctatatgccc ggcggcaaca
     2761 cgctgtacgt cttttcggtg gatggcgcgg gcatcggctt gggcgcgtcg caacttgttt
     2821 cgcatgcgca agcggcggca ccggtctcgg tgcctccagc agcagcacat aattaacggc
     2881 ggcgcacaat tgatatgaag cgggttgtgt ttattctggc gatgatgacc gcgcgccctg
     2941 cctttgcgca ggtaacggcc gacacagcca atccgctggc aggcaatgcc gacgcgacag
     3001 aagcaggcca tgcgctgttc ggcaagatga actgcgccgg ctgccacgcc tatgacctga
     3061 ccggcggcat ggggccggac ctcaccgacg ccaattggct ttacggtggc aagccgggcg
     3121 agatattcca taccatcgcc gaaggcacgc cgcgcggcat gcccgcctgg aaagacaagc
     3181 tgacgccgga cgagatctgg cagctggtca cctatattca gagcaagcac caatgaaaaa
     3241 actcgccctc gcattttttt gggccatgac catggcggcg caggccgcac cggtcgtcac
     3301 tgccgaaggt ccggtggaag gttttgcgaa aaatggcgtc gcccaattcc tcggcattcc
     3361 ctttgccaag ccgccggtcg gcgccaccag cacatcgccc ggatcgtcct tgcccaaggc
     3421 ggtgcggata tgcccgacat tgaaaccggc aaaaatcacc ttgttgccgg tttccgccgt
     3481 ccaggcatcg gccagcttct gcaagggacc attgacgatg ttgggcgcat agaccgtgat
     3541 ctcggcagct tgcgcggcga gcgacgagaa ggcgacaaac gcggcggcga ggcaaagatg
     3601 gcacaccgtt tttctccctt tattgttggc ttggcgcttc gctgcttgag gccgatattc
     3661 ttatgaaaat cagtcaagcg tgaattgcca cctttggcag tgcgccgtaa aaagagatgc
     3721 taacagggag caaaaaatgg cggaaaatac cgcactggat acaacgcagc gcgacgcatt
     3781 actgctgggc gcgggcggat tgctggcgct ggcgccgttc gaaacacccg ctttcgccat
     3841 gaccggcgac atggtgggcc tgccctgggc caacaatgcg atgcgctggg cgcaggtcgc
     3901 cttcacggaa gaaaacccgc ccagttatga tcccgatttc tggttcgatc tgttcaagaa
     3961 gacgc
//
LOCUS       DATMDK010000421         2350 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_881920,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000421 DATMDK010000000
VERSION     DATMDK010000421.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2350)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2350)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2350
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_881920"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..417)
                     /locus_tag="VNN98_08135"
     CDS             complement(<1..417)
                     /locus_tag="VNN98_08135"
                     /inference="COORDINATES: protein motif:HMM:NF026047.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxyphenylpyruvate dioxygenase"
                     /protein_id="HWM62107.1"
                     /translation="MELWDNPIGTDGFEFVEYTAPDTTALQALFGRMGFRAVGRHRSK
                     QVTLYRQGDTSFIVNAEPDSHGARFAQAHGPSACAMAFRVKDAGTAYRELLARGATPF
                     ANAVGPMELNIPAIEGIGGSVIYLVDRYGGPSIYDVD"
     gene            477..1325
                     /gene="phhA"
                     /locus_tag="VNN98_08140"
     CDS             477..1325
                     /gene="phhA"
                     /locus_tag="VNN98_08140"
                     /EC_number="1.14.16.1"
                     /inference="COORDINATES: protein motif:HMM:TIGR01267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004505 - phenylalanine 4-monooxygenase
                     activity [Evidence IEA];
                     GO_process: GO:0006559 - L-phenylalanine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine 4-monooxygenase"
                     /protein_id="HWM62108.1"
                     /translation="MAALTALPSGANPDWTIPQEWDRYTPAEHAVWDRLFARQTGMLE
                     GRVTSAFLRGLDVLRLSRAGIPDFAELSQRLEALTGWRVVAVPGLVPDAVFFEHLANR
                     RFVAGRFIRRPDQLNYLQEPDVFHDLFGHVPLLSDPAFADYMQAYGAGGLRALQFGAL
                     EKLARLYWYTVEFGLIREGGGLKLYGAGIVSSFGESTFALDDPSPNRIAFDLDRVMRT
                     DYRIDDYQQSYFVIDSFEQLRRQTADVDFAPVYRRLEGLSVLTPDAVLPTDKLTTRGT
                     MAYAKR"
     gene            1483..2013
                     /locus_tag="VNN98_08145"
     CDS             1483..2013
                     /locus_tag="VNN98_08145"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM62109.1"
                     /translation="MTKRLAALAAFTALATLPASAQPLQVQLSHCLAIPGVLQRLACY
                     DGVARGAGVSAAPRIASTAPPLPASAPPAYVPRPVPAPAASFGSERLAQPPATRPAAL
                     DRIESAVVGFDTNARGKFIVTLANGQIWKQIDGDDAVARPRKSARSVIIERAVFSSYA
                     LTFNDSSQLFKVARVQ"
     gene            complement(2014..>2350)
                     /locus_tag="VNN98_08150"
     CDS             complement(2014..>2350)
                     /locus_tag="VNN98_08150"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM62110.1"
                     /translation="VAWLSERFAQEHASGPRVMPLDFDHWLSDIEGGLRRVLAHLALP
                     ADLATGLARSPMLTRYAKLPDEHPYSPQLRRDLLDQARDEQGEEIMRGLRFLEALGSQ
                     HAAVAALLE"
BASE COUNT          386 a          786 c          745 g          433 t
ORIGIN      
        1 gtccacgtca tagatggacg gcccgccata acggtccacc agatagatga cactgccgcc
       61 gatgccttca atggccggga tattcaactc catcggcccc accgcattgg cgaagggcgt
      121 ggcgccccgc gccagcagtt cgcggtaagc cgtgcccgca tccttgacgc ggaacgccat
      181 ggcgcaggcg ctgggtccat gggcctgggc aaagcgcgcg ccgtgactgt ccggctcggc
      241 attgacgatg aagctggtgt cgccctggcg gtacaaagtg acctgcttgg agcggtggcg
      301 ccccacggcg cgaaagccca tgcgcccgaa cagcgcctgc agggcggtgg tgtccggcgc
      361 ggtatattcg acgaattcaa atccgtcggt gccaatgggg ttgtcccaga gttccatttt
      421 cggtctccgc cagggggttg gcagagatag tttcatgtgt aactatctcc gtcaagatgg
      481 ctgcattgac cgccctgccc tccggcgcca atccggattg gacgatcccg caggagtggg
      541 atcgctacac gcctgcggaa catgccgtgt gggacaggct gttcgcccgc cagaccggca
      601 tgctggaggg ccgggtgacc tcggcgttcc tgcgcgggct tgatgtgttg cggctgtccc
      661 gggcgggcat tcccgacttc gcggaactgt cgcagcgcct ggaagcgctg accggctggc
      721 gggtggtggc ggtgcccggc ctggtgcccg atgccgtatt cttcgagcat ctggccaacc
      781 ggcgctttgt cgccggccgc ttcatacggc gccccgacca gctgaactat ctgcaggagc
      841 cggacgtctt ccatgaccta ttcggtcacg ttccgctgct cagcgatcct gctttcgccg
      901 attatatgca ggcctatggc gcgggcgggc tcagggcgct gcaatttggt gccttggaaa
      961 aactggcgcg gctttactgg tacacggtgg aattcggcct gatccgcgaa gggggcgggt
     1021 tgaagcttta tggcgcgggt atcgtctcca gtttcgggga atcgacattc gcgctggacg
     1081 atccctcgcc caaccggatc gctttcgatc tcgaccgggt gatgcgcacc gattaccgga
     1141 tcgacgatta ccagcagagc tatttcgtga tcgacagttt cgaacagttg cggcggcaga
     1201 ccgcggatgt cgatttcgcg ccagtctatc ggcggctgga gggactttcc gttctgacgc
     1261 cggacgcggt cctgcccacc gacaagctta cgacccgcgg gaccatggct tacgccaaac
     1321 gctgagctcc ccgggcttac caccggccag cacggcgatt tgttccagcg cggcactttt
     1381 gctaggctcg catgggcctg aatgtttttc cggacataaa agatttttta gcccgccgga
     1441 ccgggcgaac gggccgaacc tggttggcag atggatagcg acatgacgaa aagacttgcg
     1501 gcacttgcgg cattcacagc cctggcgacg cttcccgcct ccgcccagcc cctgcaggtc
     1561 cagctttcac attgcctggc gatcccgggc gtgctgcagc gcctggcctg ttatgacggc
     1621 gtcgcccgcg gcgccggcgt cagtgccgcg ccgcgcatcg catccaccgc gccgccgctc
     1681 cctgcttcgg cgcctccggc ctatgttccg cggcccgtcc cggcgccggc cgccagcttc
     1741 ggcagtgagc ggctggccca gcccccggcc acccgccccg cggcgctgga ccggatcgag
     1801 tccgccgtgg ttgggttcga caccaatgcc cggggcaaat tcatcgtcac ccttgccaac
     1861 ggccagatat ggaaacagat cgatggcgac gacgccgtgg cccggccccg caaatccgcg
     1921 cgcagcgtga ttatcgagcg cgccgtcttc agcagctatg cgctgacctt caacgacagc
     1981 agccaactct tcaaggtggc gcgggtgcag tagtcattcc agcaatgccg ccaccgcggc
     2041 atgttgcgac cccagcgcct ccagaaaccg cagcccccgc atgatctcct cgccctgctc
     2101 gtcacgcgcc tgatccagca ggtcgcggcg caattgcggc gaatagggat gctcatcggg
     2161 cagcttggca taccgtgtca gcatcggact gcgcgccaga ccggtggcga gatcggcggg
     2221 cagcgccaga tgcgccagca cgcgccgcag cccgccttcg atgtccgaca gccagtggtc
     2281 gaaatccagc ggcatgacgc gcggcccgct ggcatgctct tgcgcgaaac gttccgacag
     2341 ccaagccacg
//
LOCUS       DATMDK010000422         3255 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_672922,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000422 DATMDK010000000
VERSION     DATMDK010000422.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3255)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3255)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3255
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_672922"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1199)
                     /locus_tag="VNN98_08155"
     CDS             complement(<1..1199)
                     /locus_tag="VNN98_08155"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM62111.1"
                     /translation="MKQPAVFTIRPSAPFAETLARGVIARVGDDPLALSPAIIYLPTR
                     RAARGFGDAFAKVMGGAALLPQFKPLGDSEEDDLLFDAAGDAPAITPLRRQLLLARLV
                     RQWDRSGRDGMLSFAQSAALADSLAKVMDDVETQGCDLSKLKDLAPENLAEHWEGVAR
                     FLGLLRDEWPAILAAEGAVNPAARRTQVLHDLARRLETSPPQGLVIAAGSTGSIPATA
                     ELLAVIARLPQGAVVLPGLDQELDAESWDRLEDAPGHPQFGLWQLLRKMKVERQDVKN
                     WFAHPANPARERLLSESLRPAPTTDAWQALQERGAAEIADGLKDIALIQAADPAQEAL
                     GIALALREALELPGRTAALVTPDRNLARRVAAEMARWGIAIDDSAGRPLAHTAAGSFL
                     CLLAEAAA"
     gene            complement(1196..1912)
                     /locus_tag="VNN98_08160"
     CDS             complement(1196..1912)
                     /locus_tag="VNN98_08160"
                     /inference="COORDINATES: protein motif:HMM:NF012695.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase family protein"
                     /protein_id="HWM62112.1"
                     /translation="MRKITAAMIMGAGLGSRMRPLTDDRPKPLVTVGGKSLIDHSLDR
                     LAAAGVTLAVVNLHYKAAMLRAHLAGRRDIEIIFSDESDKLLDTGGGVVKALSHFRGA
                     PFFVLNSDSIWVEGARPALPAMLAGWDGGRMNALLLLAEMNTAMGYEGAGDFVLQADG
                     RVARARDAKGTVYAYPGVQIVHPRLFEGAPAGAFSTNVMWDRAIAAGSLFGTVLDGVW
                     IHVGTPQARDEAEAYLRAPA"
     gene            complement(1909..2988)
                     /locus_tag="VNN98_08165"
     CDS             complement(1909..2988)
                     /locus_tag="VNN98_08165"
                     /inference="COORDINATES: protein motif:HMM:NF013775.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphotransferase"
                     /protein_id="HWM62113.1"
                     /translation="MRDFLDRAGWGAASVMPLAGDASTRRYARLALNDRKAMLMDQPQ
                     AAESPVAPPDASEEVRRALGYNAVARLAGADCARFVAAADWLRGHGLAAPDIYAADHV
                     NGFVILEDLGDALFTEVLADGGDERQLYQAAVEVLAKIHAKDAPVALSADKPLFDYDQ
                     TAQVAETDLLIEWFLPLALKRPATGEEIAEHRSLWRAALAGIDTGRRVFVHRDYHAEN
                     LLWLPEREGVARVGLIDFQDAVAGSPAYDLISLTEDARRDVSPEMAEAATAHYLATMR
                     AQGTPLDETGFRREMAVMAAQRNAKIVGIFARLHKRDGRVRYLAFLPRVWGYLARDLA
                     HPALADLRAWYDRVIPHNKRAVEIQ"
     gene            complement(3002..>3255)
                     /locus_tag="VNN98_08170"
     CDS             complement(3002..>3255)
                     /locus_tag="VNN98_08170"
                     /EC_number="2.3.1.234"
                     /inference="COORDINATES: protein motif:HMM:NF014426.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0002949 - tRNA threonylcarbamoyladenosine
                     modification [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     ATPase subunit type 1 TsaE"
                     /protein_id="HWM62114.1"
                     /translation="LVQSYDTLPPVAHFDLYRLKHAREMQELGFEDALDNGAVLVEWP
                     ERAPEALPPDALHVRLGLLDGARLARLTGPAHWESLLHV"
BASE COUNT          544 a         1155 c         1048 g          508 t
ORIGIN      
        1 gccgcagcct ccgccagcag gcaaagaaac gaacccgcgg cggtgtgcgc gaggggacgg
       61 ccggcggagt cgtcgatggc aatgccccag cgcgccattt ccgccgccac gcgccgcgcc
      121 aggttgcggt ccggtgtcac cagcgcggcc gtgcgccccg gcagttccag cgcctcgcgc
      181 agcgccagcg cgatgccgag agcttcctgt gcgggatcgg cggcctggat cagcgcaatg
      241 tctttcaagc cgtccgcgat ttcggccgcg ccacgctctt gcaaggcctg ccaggcatcg
      301 gtggtgggcg cgggacgcag gctttcgctc agcagtctct cgcgcgccgg gttggctggg
      361 tgcgcaaacc agtttttcac atcctgccgc tccaccttca tcttccgcag caactgccat
      421 aggccgaatt gcggatgacc gggcgcgtct tccagcctgt cccagctttc agcgtccagc
      481 tcctggtcca gcccgggcag caccacggcg ccctgcggca ggcgcgcgat caccgccagc
      541 agttcggcgg tggcaggaat ggagccggtg gagccggcgg cgattaccag gccctgcggc
      601 ggcgaggttt ccagccgccg ggccagatcg tgcaagactt gggtgcggcg cgcggcagga
      661 ttcaccgcgc cctcggcggc cagaatggcg ggccattcat cgcgcagcag gccgaggaag
      721 cgggcgacgc cttcccaatg ttcggccagg ttttccggcg ccagatcttt cagcttggaa
      781 agatcgcagc cctgggtttc cacatcgtcc atcaccttgg ccaggctgtc ggccagcgcc
      841 gcgctttgcg cgaaggacag catgccgtca cgcccgctcc ggtcccattg gcgcaccagc
      901 cgcgccagca gcaattggcg gcgcaacggc gtgatggcgg gtgcgtcgcc ggcggcatca
      961 aacagcagat cgtcttcctc gctgtcgccc aggggcttga attgcggcag caatgccgcg
     1021 ccgcccatta ccttggcgaa ggcatcgccg aagccgcgcg ccgcgcgccg cgtgggcaag
     1081 tagataatgg cgggagacag cgccagcgga tcatcaccca cccgtgcgat cacccctcgc
     1141 gccagcgttt ccgcaaaggg cgcgctgggg cgaatggtga agaccgcagg ctgcttcaag
     1201 cgggagcccg cagataggct tccgcctcgt cgcgcgcctg gggtgtgccg acatgaatcc
     1261 acaccccgtc cagcacagta ccgaacaggc ttccggcggc gatggcgcgg tcccacatca
     1321 cattggtgga aaaggcgccg gcgggggcgc cctcgaacag gcgcgggtgc acgatctgca
     1381 ccccgggata ggcgtaaacc gtacctttcg catcgcgcgc ccgcgccacc cggccatccg
     1441 cctgcaagac gaaatcaccg gcgccttcat agcccatcgc cgtattcatc tcggccagca
     1501 gcagcagggc gttcatgcgc ccgccatccc acccggccag catggcgggc aaagcggggc
     1561 gggcgccttc cacccagatg gaatcggaat tgagcacaaa gaacggcgcg ccgcgaaaat
     1621 gcgacagggc cttgaccacg ccgccgcctg tatccagcag cttgtcgctt tcatcggaga
     1681 aaatgatttc gatatcgcgg cgcccggcca gatgggcgcg cagcatcgcg gccttgtagt
     1741 ggagattcac caccgccagg gtcacgcccg ccgccgccag gcggtccaat gaatgatcga
     1801 tcaagctttt gccgcccacc gtcaccagcg gcttgggccg gtcgtcggtc aaaggccgca
     1861 tgcggctgcc gagccccgca cccatgatca tcgcggcggt aatttttctc actgtatctc
     1921 cacggcgcgt ttgttgtgcg gaatcacgcg atcataccat gcccgcagat cagccagcgc
     1981 cggatgggcc aggtcgcgcg ccagataacc ccagacccgc ggcagaaagg ccagatagcg
     2041 caccctgccg tcgcgcttat ggaggcgggc gaagatgccc acgatcttgg cgttgcgttg
     2101 ggccgccatc accgccatct cgcggcggaa cccggtttcg tccagcggcg tgccttgggc
     2161 ccgcatcgtc gccagataat gggcggtggc ggcttcggcc atctccggcg aaacatcgcg
     2221 gcgggcgtcc tcggtcagcg agatcaggtc ataggcgggg ctgcccgcca cggcgtcctg
     2281 gaaatcgatc aagcccacgc gggcgacgcc ttcgcgctcc ggcagccata gcaggttctc
     2341 ggcgtgatag tcgcggtgca cgaacacgcg gcgcccggta tcgattccag ccaaggcggc
     2401 gcgccacagg ctgcgatgct ccgcgatttc ttccccggtc gcaggacgct tcagcgccag
     2461 cggcaggaac cattcgatca gcaagtcagt ctccgccacc tgcgccgtct ggtcgtaatc
     2521 gaacagcggc ttgtccgccg agagcgccac cggtgcatcc ttggcatgaa tcttcgccag
     2581 tacttcgacg gcggcctgat agagttgcct ttcgtcgccg ccgtccgcca gcacctcggt
     2641 aaacagtgcg tcgcccaaat cttccagaat gacgaagcca ttgacgtgat cggcggcata
     2701 gatgtcgggc gccgccaggc cgtggccgcg cagccagtcc gccgccgcca cgaagcgggc
     2761 gcagtccgcc cccgccagcc gcgccactgc gttatagccc aaggcgcgac gcacctcctc
     2821 gctggcatcc ggcggcgcga cggggctttc cgccgcctgc ggctggtcca tcagcatcgc
     2881 cttgcgatca ttcagcgcca gccgggcata gcggcgggtg gaggcgtcgc cggccagcgg
     2941 catcacgctg gccgcgcccc agccagcgcg atccagaaaa tctctcatcg cagcttgccg
     3001 ctcagacatg cagtaggctt tcccagtgcg ccgggccggt caggcgcgcc agccgcgcgc
     3061 cgtccagcaa tcccagccgc acgtgcagcg catcgggcgg cagggcttcg ggcgcgcgct
     3121 cgggccattc caccagcacc gcgccattgt ccagcgcgtc ctcgaaaccc agctcctgca
     3181 tctcgcgcgc atgcttcagg cgataaagat cgaaatgggc gaccggcgga agcgtgtcgt
     3241 aactctgcac caggg
//
LOCUS       DATMDK010000423         2949 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1107891,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000423 DATMDK010000000
VERSION     DATMDK010000423.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2949)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2949)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2949
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1107891"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2078)
                     /locus_tag="VNN98_08175"
     CDS             complement(<1..2078)
                     /locus_tag="VNN98_08175"
                     /inference="COORDINATES: protein motif:HMM:NF012907.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016810 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide deacetylase family protein"
                     /protein_id="HWM62115.1"
                     /translation="MVSKPIFFDASGRRAARIKVVAWAVGIAALVILVGFGASLALSP
                     PVTGLDLPGRVAAAVVPNLVKRAQKPGLLARAERLAAAARKRRLEEIARRSQAQSALP
                     SRLLPAILKPQDGRPLAIGFYTNWQGKDDPSWPSLKRSLKNLDWVVPGWMVLDGPQLQ
                     FKTRLDQRALDFIRTTKPSVAILPMIQNASGGKWDGPGLARLLADPARSGRLLDQIMA
                     FIAAHKLQGVTVDFENVPQSAHKDLENFLSRMSAAFAPHDWIIAQAAPFDDDQWPYQT
                     YSDIVDYTMLMAYDQVDENGPPGSIAGQNWYEQTLDKRMRQLPADSTIVTIGSWAYDW
                     ANSDPATALSFENAMAAARDNGAAVLFDPATNNPHFSYAESDGTKHQVWLLDGVTAFN
                     QMHAADPYRPAGYALWKLGSEDPSILPLMGRPYNAPAPASLKHIANNIEDVDFDGEGE
                     ILQVVADPAVGARSLTLEAATGDIVDERYDSLPTSYVIRRVGAVSKKLALTFDDGPDP
                     EWTPAILAILKEKKVTATFFMIGSAMEAHPGLVQQVLAEGHEIGNHTYTHPDLSDTPG
                     PAVRLELNATQRLFEALTGRSMRLFRPPYLGDAEPSDADEIVPVEIAQSLGYITIGTH
                     VDTLDWMMPSVPQMMKDVVREVEDPNPYNRGNIILLHDSGGDRSRTVAALPVLIDALR
                     AHGYKLVTIG"
     gene            2211..2573
                     /locus_tag="VNN98_08180"
     CDS             2211..2573
                     /locus_tag="VNN98_08180"
                     /inference="COORDINATES: protein motif:HMM:NF015639.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YkgJ family cysteine cluster protein"
                     /protein_id="HWM62116.1"
                     /translation="MVSYNCAKCPGYCCSYPLIPLKKSDVQRLADYFGLTFEAAAKKF
                     TKVDGEEPYAMRRKADPHFGKTCRFFDIEKRSCTIYKARPTICREYPGGGCGYYTFLM
                     AERNSQEDPDHVASTWNA"
BASE COUNT          501 a          940 c          967 g          541 t
ORIGIN      
        1 tcgccgatgg tgaccagctt gtacccgtgg gcgcgcaggg cgtcgatcag caccggcagg
       61 gccgccaccg tgcggctgcg gtcgccgccg gaatcatgca gcaggatgat gttgccgcga
      121 ttgtagggat tgggatcttc cacctcccgc accacatcct tcatcatttg cggcacggac
      181 ggcatcatcc agtccagcgt atcgacatgg gtgccgatgg tgatgtagcc caggctttgc
      241 gcgatctcga ccggcacgat ctcgtcggcg tcgctgggtt cagcgtcgcc cagatagggc
      301 gggcggaaca gccgcatcga tcgcccggtc agggcctcga acagccgctg ggtggcgttc
      361 agttccagcc gcaccgcagg ccccggcgtg tccgacaggt cgggatgggt ataggtgtgg
      421 ttgccgatct catggccttc ggccagcacc tgctgcacca ggccgggatg cgcctccatg
      481 gcggagccga tcatgaagaa ggtggcggtc accttctttt ccttcaggat ggcgaggatg
      541 gcgggcgtcc attccgggtc agggccgtcg tcgaacgtca gcgccagctt tttggacacc
      601 gcgccgacgc ggcggatgac atagctggtg ggcaggctgt catagcgttc gtccacgatg
      661 tcgccggtcg ccgcttccag ggtcaggctg cgcgccccca ccgccggatc ggccacaacc
      721 tgcaaaatct cgccttcgcc gtcgaaatcc acatcctcga tattgttggc gatgtgcttc
      781 aggctggcgg gcgcaggcgc gttatagggc cgccccatca agggcaggat gctgggatcc
      841 tccgagccca gtttccacag cgcatagccg gccgggcgat aaggatcggc ggcgtgcatc
      901 tggttgaagg cggtgacccc atccaggagc cagacctgat gcttggtgcc gtcgctttcg
      961 gcatagctga aatggggatt gttggtggcg ggatcgaaca gcaccgcggc gccattgtca
     1021 cgcgccgccg ccatggcatt ttcaaagctc agcgccgtgg cggggtcgct gttcgcccag
     1081 tcataggccc aggagccgat ggtgacgatg gtgctgtccg cgggcagctg gcgcatgcgc
     1141 ttgtccagcg tctgctcgta ccagttctgg cccgcgatgg agcccggcgg accgttttcg
     1201 tccacctggt cgtaggccat cagcatggtg tagtcgacga tgtcggaata ggtctggtag
     1261 ggccattgat cgtcatcgaa cggcgctgcc tgggcgatga tccagtcatg cggcgcgaag
     1321 gccgccgaca tgcgggacag aaaattctcc aggtccttgt gcgcgctttg cggcacattc
     1381 tcgaaatcca ccgtcacgcc ctgcagcttg tgggcggcga tgaacgccat gatctggtcc
     1441 agcaaccggc ccgaacgcgc cgggtcggcc agcagccggg ccaggcccgg cccatcccat
     1501 ttgcccccgc tggcgttctg gatcatgggc aggatggcga cgctgggctt ggtggtgcgg
     1561 atgaagtcca gcgcccgttg atccagccgg gtcttgaact gaagctgggg gccatccagc
     1621 accatccagc cgggcaccac ccagtccagg tttttcagcg agcgtttcaa cgacggccaa
     1681 ctggggtcat ccttgccttg ccagttggta taaaagccga tcgccagcgg ccgcccatct
     1741 tgcggtttga gaatggcggg cagcagccgg ctgggcagcg cgctttgcgc ctggctccgg
     1801 cgggcgattt cctccaaccg gcgcttgcgc gccgcggccg ccagccgttc agcgcgggca
     1861 agcaggccgg gcttttgggc ccgcttgacc aggttgggca ccaccgccgc cgccacccgg
     1921 cccggcaagt ccaggccggt gaccggcggc gaaagggcca ggctggcgcc aaagcccacc
     1981 aggatgacaa gggcagcgat gcccaccgcc caggccacca ccttgatgcg ggcggcgcgc
     2041 cgcccggagg cgtcgaagaa gatcggcttg ctgaccatcg tcttttgata caacgcggtg
     2101 ggatggacgc aagaggggtg cgcgtcatgg agtcgccacg ccccggagcc acatggcctc
     2161 ttcgcgcgtt catgctaaca gaggtgttgc ggcgattcag gcgggtatgc gtggtttcct
     2221 ataattgtgc gaagtgtccg ggctattgct gttcctaccc cctgattccc ctgaaaaaga
     2281 gtgatgtgca gcggctggcc gattatttcg gcctgacctt tgaggcggcg gccaagaagt
     2341 tcaccaaggt ggacggcgaa gagccttatg ccatgcggcg caaggccgat ccccatttcg
     2401 gcaagacctg ccgcttcttc gatatcgaga agcgcagctg caccatctat aaggcgcgcc
     2461 ccaccatctg ccgggaatat ccgggcggcg gctgcggcta ttacaccttc ctgatggcgg
     2521 agcgtaattc gcaggaagac cccgatcacg tcgcctccac ttggaatgca taacccctcc
     2581 ggccttcgct ggccccaggg ccagctacgg ccacctcccc gtgcaagcgc gctgacgcgc
     2641 gcgccgggga ggatgcaagt ctgcatgctg cggtgcagca gctaaccgcc cgactttctt
     2701 cacaaaaaag cgcgcgcccg catgacagcg gaggtttgcc tgctctaagg tccggccaca
     2761 acacgggcaa cccggctaga ccgggccgac aaggggaatt cgcgcatgga aatctggcat
     2821 caggtctacg acccgctgaa caaccggttc ctgtccacgg tcgtggcggc gctgccgatc
     2881 gttctgctgc tggcgatgat tgcctccaac aaggtgaaga cctactgggc ggcggcgatc
     2941 gcgctggtc
//
LOCUS       DATMDK010000424         2763 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_3179177,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000424 DATMDK010000000
VERSION     DATMDK010000424.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2763)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2763)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2763
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3179177"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..678)
                     /locus_tag="VNN98_08185"
     CDS             complement(<1..678)
                     /locus_tag="VNN98_08185"
                     /inference="COORDINATES: protein motif:HMM:NF026200.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM62117.1"
                     /translation="MGAPVKSHELLAGNWDVIDGDKYCDETAAVKHLLESLALTSDAR
                     TAIMRGALLLVRGARLKARRQGVVESFLQEFSLSTPEGLALMGIAEALLRTPDATTKD
                     KLIAERVNAADWGAHLGSSDSLFVNASTWALMLTQKWGDSGDLSDGAGILHRLVTRLG
                     EPVVRAAVGRAIWIMGHQFVLGDSIGAALARAGKENLLCSFDMLGEGARTAAEAERFE
                     AAYAAAIR"
     gene            826..1287
                     /locus_tag="VNN98_08190"
     CDS             826..1287
                     /locus_tag="VNN98_08190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004406045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC ligand binding domain-containing
                     protein"
                     /protein_id="HWM62118.1"
                     /translation="MNNLDATDKALLRELQRDGRITNQDLAQCIGLSPAACLERVKRL
                     REKGVIRRYMIDIDPGAVDLALLIFVEVSLHSTVESALDEFKAIVRNTPEILECHLVA
                     GGFDYLIKARVRDMNAYRAFLGERLSLLPGVRETRTYAVLEEVKSTTALPI"
     gene            complement(1300..1722)
                     /locus_tag="VNN98_08195"
     CDS             complement(1300..1722)
                     /locus_tag="VNN98_08195"
                     /inference="COORDINATES: protein motif:HMM:NF013224.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC family transcriptional regulator"
                     /protein_id="HWM62119.1"
                     /translation="MMDELDRKLLALLRSNARETAVILACKLKVSRGTVQNRIAKMVA
                     ERRIQGFTIRTAPDFEESRVRAIMCIAIEGELSAKVIRALRGFAEVEDIHTTNGRWDL
                     VVALVTDTLVGFSQALDQIRMIAGIAATETSLLLASVK"
     gene            1835..2716
                     /locus_tag="VNN98_08200"
     CDS             1835..2716
                     /locus_tag="VNN98_08200"
                     /inference="COORDINATES: protein motif:HMM:NF039614.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine deiminase-related protein"
                     /protein_id="HWM62120.1"
                     /translation="MTNRPHFLITDPSHFGVVYQINPWMRPDAWHADPAAGLAAANQG
                     SLALRTALIAAGGEVETVGAVAGLPDLVFPANAAIILDGRALPARFRHPERQGEEAVF
                     HAAFRSLQLRGLITEIIELPEGVIQEGAGDCIWDADRAFFWAGHGQRSTANSIPAIEQ
                     AFGQRVVPLELASQRFYHLDTCFCPLAGGKVMFYPPAFTPGALAAIHAHVRPEDRLEA
                     TAEEAGAFCVNAVNIGRYVIVAKAPDSLRLKLGALGYRLIEVDLAPFILSGGGAYCMT
                     LRLDRRSEPVAAARAAE"
BASE COUNT          508 a          898 c          793 g          564 t
ORIGIN      
        1 cctgatcgcc gccgcatagg cggcctcaaa ccgttcggct tcggctgcgg ttcgcgcgcc
       61 ttcgcccagc atatcgaagg aacagagcag gttttccttc ccggcccgcg ccagcgccgc
      121 cccgatactg tcgcccagga cgaattgatg ccccatgatc cagatcgccc ggccgacggc
      181 cgcccgcacg accggctcgc ccaggcgggt caccagccgg tgcagtatgc cggccccatc
      241 gctcaaatcg ccgctatcgc cccatttctg cgtcagcatc agcgcccagg tggaggcgtt
      301 gacgaacaag ctgtccgaac ttcccagatg cgccccccaa tcggcagcat tcacacgttc
      361 cgcgatcagc ttatccttgg tggtggcgtc gggcgtgcgc agcagcgcct cggcgatccc
      421 catcaaggcc agcccttccg gcgttgagag cgagaattcc tgcaggaagc tttccaccac
      481 gccctgacgc cgcgccttca ggcgtgcgcc gcgcaccagc agcaaggcgc cccgcataat
      541 cgcggtgcgt gcatcggatg tcagcgccaa cgattccagc aaatgcttta ccgccgctgt
      601 ttcatcgcaa tatttatcgc cgtctatgac atcccaattg ccggccaaca attcgtggga
      661 tttgacagga gcgcccatga tcaacattcc acccgattga ctgtgccaac gcccgaattg
      721 cggggcgaga acttcctcaa ttcggaatta caggctataa gtcaatagtc ctgcgataat
      781 ttctgaccaa tgcaaaatat tcttctgttg gagtggtgat ttgccatgaa taatttggac
      841 gcgacagaca aagcgctgct gcgcgagctg cagcgcgatg gccgcatcac caatcaggat
      901 ctggcgcaat gcatcgggct ctcgcccgcc gcctgtttgg agcgggtcaa acgcttgcgg
      961 gaaaaaggcg tcatccggcg ctatatgatc gacatcgatc ccggcgccgt cgatctcgcg
     1021 ctgctcatct ttgtcgaagt cagcctccac agcacggtgg aatcggcgct ggatgaattc
     1081 aaggcgatcg tcaggaacac gccggaaatt ctcgaatgcc atttggtggc gggcggcttc
     1141 gattatctca tcaaggcccg tgttcgggac atgaatgcct atcgcgcttt tctcggggaa
     1201 cgcctgtccc tgttgccggg cgtgcgcgag acccgcacct atgccgtgct ggaggaagtc
     1261 aaatccacca ccgctttacc tatctgaaga accggtctgt catttgacgc tggcaagcag
     1321 aagcgaggtt tccgtcgccg cgatgcccgc gatcatccgg atctgatcca gcgcctgact
     1381 gaatcccacc agggtatcgg tgaccagcgc gacaacaagg tcccagcgcc cgttggtggt
     1441 gtggatatct tccacttcgg caaagccgcg taacgcgcgg atcactttcg cggacagttc
     1501 cccttcgatg gcgatgcaca tgatcgcccg gacgcggctt tcctcgaagt cgggcgcggt
     1561 gcgaatggtg aagccttgaa tccggcgttc cgccaccatc ttggcgatac ggttctgcac
     1621 cgttccgcgc gagactttga gcttgcatgc cagaatcacc gcggtttcgc gcgcgttgga
     1681 acgcagcagc gccagcaatt tgcggtccag ttcgtccatc ataccgtcac ccgatattgt
     1741 cataatgcca ataacctgcc gtactttagc atcttgaagt cttttcgcta gcgccggttt
     1801 gagttccgat aaccatattt cgaggggaac tttgatgacg aaccgcccgc actttctgat
     1861 caccgatccc agccatttcg gcgtcgtcta ccagatcaat ccctggatgc ggcccgatgc
     1921 ctggcatgcc gatcccgccg ccggcctcgc ggctgccaat cagggttcac tggccttgcg
     1981 gacggcactc atcgccgccg gtggcgaggt ggaaacagtc ggggcggtgg cagggttgcc
     2041 agatctcgtc tttcccgcca acgccgccat catcctcgat ggccgggcgc tcccggcgcg
     2101 cttccgccac cccgaacggc aaggcgagga agcggtgttc catgccgcgt tccggtcact
     2161 gcaacttcgc ggactgatca cggagatcat cgaactgccg gaaggcgtaa ttcaggaagg
     2221 cgccggcgac tgtatctggg atgccgatcg ggcgttcttc tgggccggac atggccagcg
     2281 ctccacggcg aattccattc cggcgatcga gcaagctttt gggcagcgcg tggttccgct
     2341 ggaactggcc agccagcgtt tttatcacct cgacacctgt ttctgccctt tggcgggcgg
     2401 gaaagtgatg ttttatcccc ccgccttcac ccccggcgcg ctggcggcga tccatgccca
     2461 tgtgcgcccc gaagaccgtc ttgaagccac ggcggaagag gccggcgcct tttgcgtcaa
     2521 cgccgtcaat atcggtcggt atgtgatcgt ggccaaggcg ccggacagcc tgcgcctcaa
     2581 actgggcgcg ttggggtatc gccttatcga agtcgatctg gcgcccttca ttctgtccgg
     2641 cggcggtgct tactgcatga ccttgcgcct ggacagacgc agcgaaccgg tggctgcagc
     2701 gcgcgcggcc gagtgaggca tcatgaacca catcgcgcgt ccccatcccg cggccgctga
     2761 cct
//
LOCUS       DATMDK010000425         5112 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_674995,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000425 DATMDK010000000
VERSION     DATMDK010000425.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 5112)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5112)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5112
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_674995"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1044
                     /locus_tag="VNN98_08205"
     CDS             <1..1044
                     /locus_tag="VNN98_08205"
                     /inference="COORDINATES: protein motif:HMM:NF014207.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-length control protein FliK"
                     /protein_id="HWM62121.1"
                     /translation="QAAAATAQAPVAAATVQTQTPTATAQAQATPVTAPAQVTPAAAQ
                     APAPATTAQASAPSAPAQASAAPAQASAPADDVEDPQTQIQVATQALAKTDPAAPVTK
                     SDSAKPAPAKTAANGKTVSADDNKTGDAAKADPANIAADKAGDVKPNPPPAEAVSSSD
                     APKPAPQPVQAANTNLATATITAPQAPQALLQSGAAPIITQHIQVTAQPMPNMAALAV
                     TIAAKSQSGARQFDIRLDPPELGRVDVRLSIDATGKTSAHLSADQPQTLDLLQRDASV
                     LTRALRDAGLNVSQDGLNFSLRQQAHDGSAGNGNNRGAGRAFSATATISIDPTVTSAA
                     TRARTDGRVDIRV"
     gene            1057..1722
                     /locus_tag="VNN98_08210"
     CDS             1057..1722
                     /locus_tag="VNN98_08210"
                     /inference="COORDINATES: protein motif:HMM:NF015896.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FlgD immunoglobulin-like domain containing
                     protein"
                     /protein_id="HWM62122.1"
                     /translation="MTVTPTSSTPAATTGTATTPDSMSQLSSNFSTFLTLLTTQLKNQ
                     DPTSPMDSNAFTQQLVMYSQVEQQIDSNANLKTLISQGSSNAAAVTTGYLGKKVSITN
                     GSASLSGGAANWTYNLAADASGTQLSITDANGKVVYTGAGETASGNHSFAWDGKDTNG
                     NQLADGTYKLAVTASDAAGSTVTSTVASAGTVSQIDLTGTTPQLIIGNMEVGVGDIAA
                     VSN"
     gene            1816..3120
                     /locus_tag="VNN98_08215"
     CDS             1816..3120
                     /locus_tag="VNN98_08215"
                     /inference="COORDINATES: protein motif:HMM:TIGR03506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0071973 - bacterial-type
                     flagellum-dependent cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook protein FlgE"
                     /protein_id="HWM62123.1"
                     /translation="MSLYGALNIGVAGLSANSQALSASSSNIANVNTVGYKNQTVNFE
                     TFLNASGLAGNSSAGVGAVIGQNVTTQGLPTATSSPTDMAITGAGFFVVASNTTNAAT
                     QEYTRAGNFTPDENGNLKNAAGLYLQGYKLDSLGNIPTSSSALSLINITSLSGKAQAT
                     ANLGIQANLQASSTLDATYTTGDMTSGAATPDFRRTINIFDSQGGSQPVTFSFIKTGA
                     NTWAYEAAYAGAASNLSSANPIGTGTVSFNSDGTLKNVNGASPASGSFNLTIPWAAST
                     GLASQTIAVNYGAVGGTSGLTQFDTASTLNGTSPDGSSFGNVTGVTVDKDGTVTALFS
                     NGLSQAVYKIPIATFTNPDGLGQVNGNAYVATRGSGAASVNLANTGAAGGIASQSLEA
                     STVDLATEFTNLITTQRAYSASARIITTADQMLQQLEQLPTN"
     gene            3272..3544
                     /locus_tag="VNN98_08220"
     CDS             3272..3544
                     /locus_tag="VNN98_08220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007015551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1153 domain-containing protein"
                     /protein_id="HWM62124.1"
                     /translation="MEERKGRVSYVIGPDGSPLTLADLPPPSTRRWVIRRKAEVVAAV
                     RGGLLSLDDACKRYTLTVEEFLAWQHAIDRFGLAGLRATRVQQYRN"
     gene            3736..>5112
                     /gene="fliF"
                     /locus_tag="VNN98_08225"
     CDS             3736..>5112
                     /gene="fliF"
                     /locus_tag="VNN98_08225"
                     /inference="COORDINATES: protein motif:HMM:TIGR00206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009431 - bacterial-type flagellum basal
                     body, MS ring [Evidence IEA];
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0001539 - cilium or flagellum-dependent
                     cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal-body MS-ring/collar protein
                     FliF"
                     /protein_id="HWM62125.1"
                     /translation="MPEFFKTVGAARFGVMAGVAAVLTAFFLYIAGAITEPPKTILFS
                     GLESRDAAAVTGKLDGMAVKYDVKDGGTILVPADQVTKLRMALAQDNLPAAGVGYEIF
                     DKSDAFGTTAFVQNINHQRALEGELSRSMQTIEGIQAARVHLVIPERQVFSRDDQQPS
                     ASVVLKTAGRMDRGQVQAIQHLVAAAVAGLSADRVAIVDDRGNLLAGGDDKSGPDALA
                     RNQDEDTTNYENGLRQRIEAIVTSVVGTGHMQVQVAADINYNHTQTTSESYDPDSKVV
                     RSTQTVEQNATNTSPGANAVSVANALPGGASAGGDQGKDTSGRTEETTNYEISKKVTT
                     STVDGGDIKKLSVAVVVDGSGDAAYKPRSAEEMSKITALVKSAMGFDAARGDQVQVTN
                     MAFARIEESAGTPAPKPLLGLDSSYWFKIIEAAILCLTALLIGLFVAKPLINRMFAAQ
                     MAAGSGPLA"
BASE COUNT         1026 a         1771 c         1499 g          816 t
ORIGIN      
        1 caggctgccg ctgcaacggc gcaagctccg gttgccgccg caacagtgca gactcagaca
       61 cccacggcaa cggcgcaagc tcaggctacc cctgtaacgg cgcctgctca ggttacacct
      121 gcagcggccc aggccccggc acctgccacc acggcgcagg cttccgcccc ctccgcaccg
      181 gcccaggctt cggccgcacc ggcgcaggct tcagctcccg ccgatgatgt cgaagatccc
      241 cagacacaaa tacaagtggc cacccaggcc ctggccaaga ctgacccggc cgcgcctgtc
      301 accaagagtg acagcgccaa acccgcgcct gcgaagacgg cggcgaacgg caagacggtt
      361 tcggctgatg acaacaagac cggcgacgct gccaaagccg accccgctaa catcgctgcc
      421 gacaaggccg gcgacgtgaa acccaatccg cccccggccg aggctgtcag cagcagcgac
      481 gcgcccaaac cggcgccgca gccggtccag gccgcgaaca ccaatctggc tacggccacc
      541 attaccgcgc cgcaggcccc gcaggcgtta ctgcaatccg gcgccgcgcc catcatcacc
      601 cagcacatac aggtgacggc gcagcccatg cccaatatgg ccgcgctggc ggtgaccatc
      661 gccgccaagt cgcagagcgg cgcgcggcaa ttcgatatcc gcctggatcc gcccgaactg
      721 ggccgggtgg acgtgcgcct gtcgatcgac gccaccggca agaccagcgc ccatctttcc
      781 gccgaccagc cccagaccct ggacttgctg cagagggacg cctcggtcct gacccgcgcc
      841 ttgcgcgatg ccggcttgaa cgtgtcgcag gacggcttga atttttcgct gcgccagcag
      901 gcccatgacg gcagcgccgg caacggcaac aatcgcggcg ccgggcgcgc cttctcagcc
      961 accgcaacca tcagcatcga tcccaccgtc accagcgccg ccactcgcgc ccggaccgac
     1021 ggacgggtcg acatcagggt ttaaaggatc acgccaatga ccgtcacccc cacctcttcg
     1081 acacccgccg cgacgaccgg caccgccacg acaccggact ctatgagtca gctgtcgagc
     1141 aatttctcga cctttctcac cctgttgacg acgcagctga agaaccagga ccccaccagc
     1201 ccgatggatt ccaatgcctt cacccagcag ctggtaatgt acagccaggt cgagcagcag
     1261 atcgactcca acgccaatct caagaccctt atctcgcagg gcagcagcaa tgccgccgcc
     1321 gtcaccaccg gctatctggg caagaaggtt tcgatcacca acggcagcgc ctcgctcagc
     1381 ggcggcgccg ccaactggac ctataatctg gcggccgacg cttccggcac ccagctcagc
     1441 atcaccgacg ccaacggcaa ggtcgtctat accggcgcgg gcgaaaccgc ctccggcaat
     1501 cacagctttg cctgggacgg caaggatacc aacggcaacc agctggccga tggcacctac
     1561 aagctggcgg tcaccgccag cgatgccgcc ggcagcaccg tcaccagcac ggtcgccagc
     1621 gccggcacgg tcagccagat cgacctcacc ggcaccacgc cgcaattgat aatcggaaac
     1681 atggaagtgg gcgtgggcga tatcgccgcc gtctctaact gattttggag ttcaacaaca
     1741 tcggcgccga gaagcggcgc caaacctcaa gcggacacgg tcgaatacct ccgtccgccc
     1801 tgaaggaaac gtaaaatgag tttgtatgga gcattgaata tcggcgttgc cggcctgtcc
     1861 gccaacagcc aggcgctgtc ggcctcttcg tccaacatcg ccaacgtcaa caccgtcggc
     1921 tacaagaacc agacggtcaa cttcgagacc tttctcaacg cctccggctt ggcgggcaat
     1981 tcctcggccg gcgtcggcgc ggtgatcggc cagaatgtca ccacccaggg cttgccgacg
     2041 gcgacatcct cgcccaccga catggccatt acgggcgccg gtttcttcgt ggtcgcctcc
     2101 aacaccacca acgccgcaac gcaggaatat acccgcgccg gcaacttcac ccccgatgaa
     2161 aacggcaatc tgaagaacgc cgccggtctt tatctgcagg gctacaagct ggattcgctg
     2221 ggcaatattc ccaccagctc cagcgccttg agcctgatca atatcaccag cctgtcgggc
     2281 aaggcccagg ccaccgccaa cctgggcatc caggccaacc tgcaggccag ttcgaccctg
     2341 gacgccacct acaccacggg cgacatgacc tccggcgcag cgacgccgga cttccggcgc
     2401 accatcaaca tctttgacag ccagggcggc agccagccgg tcaccttctc cttcatcaag
     2461 accggcgcca atacctgggc ctatgaagcg gcctatgccg gcgcggcgtc gaatctgtcc
     2521 agcgccaatc cgatcggcac cggtacggtg agtttcaact ccgacggcac cttgaagaac
     2581 gttaatggcg cgtcgccggc ctcgggctcg ttcaacctga cgatcccatg ggcggcgtcc
     2641 accggccttg ccagtcagac catcgcggtc aattacggcg cggtgggcgg cacatcgggg
     2701 cttacccagt tcgacaccgc ttcgaccttg aacggtacct cgcccgacgg ttcgtctttc
     2761 ggcaacgtca ccggcgtgac ggtcgacaag gacggcacgg tgacggcgct gttctccaac
     2821 ggtctgtcgc aggccgtcta caagatcccg atcgccacct tcaccaatcc ggacgggctg
     2881 ggtcaggtca acggcaacgc ctatgttgcc accagagggt cgggcgcggc cagcgtcaat
     2941 ctggccaata ccggcgccgc cggcggcatt gcctcccagt cgctggaagc ctcgacggtg
     3001 gatctggcca cggagttcac caacctgatc accacccagc gggcttattc cgcatcggcg
     3061 cgcatcatca ccaccgccga tcagatgctg cagcagctgg aacagttgcc gacaaactaa
     3121 gctgaacggg aaaggcccgt aaatctggcc tttcccgcaa tattgccaaa gagttgagtg
     3181 aagcttttag cggttcgttt accacggttc ttggccattt ttaaacgcgg gagcgggtat
     3241 tttggcgatg gacagtgtcg ggagttttca aatggaagag cgcaaaggac gcgtgagcta
     3301 cgtcatcggg cccgatgggt caccgttgac gctcgccgat ctgccgccgc cttcgacgcg
     3361 tcgttgggtc atccgccgca aggcggaggt cgttgccgcc gtgcgcggcg gcctgctgag
     3421 cctggacgat gcctgcaagc gttatacgct gacggtggag gaattcctcg cctggcagca
     3481 tgcgatcgat cgtttcggcc tggcgggcct gcgcgcgacg agggttcagc agtaccgcaa
     3541 ttaaacgatt gcgcgttctc gggcgtgcgc gcggaaacga attgttaggg aagttgtaaa
     3601 cagctcgtta agcaaaataa taggcgcggt accaccgccc ggcttttcct taagcctaat
     3661 tttaccgtac aggcggcaat gtttgcctag cagaacggac ggagattttc cgcaccgctc
     3721 ttccaggagg acatcttgcc cgaatttttc aaaacggttg gcgcggcccg gttcggcgta
     3781 atggccggcg tggctgccgt gctcaccgcc ttcttcctct atatcgcggg cgccatcacc
     3841 gagccgccca agaccatcct gttctccggc ctggaatcgc gtgatgccgc ggcggtgacc
     3901 ggcaagctgg acggcatggc cgtcaagtat gacgtcaagg acggcggcac catcctggtc
     3961 cccgccgacc aggtcaccaa gctgcgtatg gcgctggcgc aggacaatct gccggccgcg
     4021 ggcgtgggct atgaaatctt cgacaagtcg gatgccttcg gcaccaccgc ctttgtgcag
     4081 aacatcaatc accagcgcgc cctggaaggg gaattgtcgc gctcgatgca gaccatcgaa
     4141 ggtatccagg cggcgcgggt gcatctggtc attcccgaac gccaggtctt ttcgcgcgac
     4201 gaccagcagc ccagcgcctc ggtggtgctg aagaccgccg gccggatgga ccgcggccag
     4261 gtccaggcca tccagcatct ggtggcggcg gcggtggccg gcctttccgc cgaccgcgtt
     4321 gccattgtgg acgatcgcgg caacctgctg gcgggcggcg acgacaagtc cggtcccgac
     4381 gcgctggccc gcaaccagga cgaggacacc accaattacg aaaatggctt gcgccagcgc
     4441 attgaggcca tcgtcacctc ggtggtgggg accggccata tgcaggtcca ggtcgcggcc
     4501 gacatcaatt acaatcacac ccagaccacc agcgaatcct acgatcccga cagcaaggtg
     4561 gtgcgctcga cccagacggt ggagcagaac gccaccaaca ccagccccgg cgccaatgcc
     4621 gtgtcggtgg ccaacgccct gccgggcggc gcctcggcgg gcggcgacca gggtaaggac
     4681 acatcgggtc gcaccgaaga aaccaccaat tacgagattt ccaagaaggt cacgacctcc
     4741 acggtcgacg gcggcgacat taagaagctg tcggttgcgg tggtggtgga cggcagcggc
     4801 gatgccgcct acaagccgcg cagcgccgaa gagatgagca agatcaccgc gctggtgaaa
     4861 tcggccatgg gcttcgatgc cgcgcgcggc gaccaggtgc aggtcaccaa catggccttc
     4921 gcccgcatcg aggaaagcgc cggtacgcct gcgcccaagc cgctgctggg cctggacagc
     4981 tcttactggt tcaagatcat cgaggccgca atcctgtgcc tcaccgccct gctgatcgga
     5041 ttgttcgtcg ccaagccttt gataaaccgg atgttcgcag cccagatggc cgctggcagc
     5101 ggtcccctgg cg
//
LOCUS       DATMDK010000426         2119 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2262757,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000426 DATMDK010000000
VERSION     DATMDK010000426.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2119)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2119)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2119
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2262757"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1297)
                     /locus_tag="VNN98_08230"
     CDS             complement(<1..1297)
                     /locus_tag="VNN98_08230"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HWM62126.1"
                     /translation="MPPLVSIQNLTVALPPGADRPLAVDDVSLEVGRNEIVCIVGESG
                     SGKSLAAHAVMGLLPRGVTATGGRILFDGVDLLQQPPEAMRKRRGCDIAMIFQDPMAA
                     LNPVVAIGKQVTEQIRAHRAIPQSAALKQAGDLLGQMGLSDVASLLKAYPHQLSGGQR
                     QRVMIAMALSLSPQLLIADEPTTALDVTTQAQILTLIKRIQAEREMGLLFITHDFGVV
                     ADMADRVAVMRHGRIVESGAVGEVLGDPAHAYTRALIAAVPRGESQLPPLLEARPLVQ
                     VTGLTKRFRRGGVFFGASITVAVDDVTLTLSQGETLGVVGESGSGKSTLARCMIRLLD
                     PDAGEVLLDGADIARMKSGALRPLRRRIQMVFQDPFSSLNPRQSIGDIVTAGPRAYGE
                     DAAEARTRAADILRLVGLNPQTMDHLPHEFSGGQRQRIGL"
     gene            complement(1297..>2119)
                     /locus_tag="VNN98_08235"
     CDS             complement(1297..>2119)
                     /locus_tag="VNN98_08235"
                     /inference="COORDINATES: protein motif:HMM:NF012738.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HWM62127.1"
                     /translation="SFTRRFFARPTAIFGFAVFAAIVVIALAAPLIFAAGPFSIVGMP
                     LLPPGAPGLPAGSDVLGRNMMVGLAYGARISLLVGLASTLCAVGIGVLLGAVAGYYGG
                     LVDDLLMRVTEFFQIIPSFVLLMVLVAFLQPSLTSAVIGIALISWPQVARVVRGEFLT
                     LRSREFVQAARTLGMRDAAIIFTQILPNALPPILVVGSMMVGNAILTESALSFLGLGD
                     PNLLSWGSMIGGSRAAMWVAWWTTVLPGLSIMVTVLALNFIGDGLNDALNPRRRH"
BASE COUNT          412 a          732 c          670 g          305 t
ORIGIN      
        1 ccaggccgat gcgctggcgc tggccgccgg aaaattcatg cggcaggtgg tccatggtct
       61 ggggattcaa tcccaccagc cgcaggatat cggcggcgcg ggtgcgcgcc tccgccgcgt
      121 cttcgccata ggcgcgcgga ccggcggtaa caatgtcgcc tatgctttgg cgcggattga
      181 gcgaggagaa gggatcctgg aacaccatct gaatgcgccg ccgcaacggg cgcagggcgc
      241 cggatttcat gcgcgcgatg tcggcgccgt ccagcaggac ctcgcccgca tcgggatcca
      301 gcaagcggat catgcaacgc gccaaagtgg atttgccgga accggactcg cccaccacgc
      361 ccaaggtctc accctggctc agagtaagag tgacatcgtc taccgccacc gtgatggagg
      421 cgccgaaaaa caccccgccg cggcggaagc gcttggtcag gcctgtgacc tgaaccagcg
      481 gccgcgcctc gagcagcggc ggcagctggc tctcgccgcg cggcaccgcc gcgatcaggg
      541 cgcgggtata ggcgtgggcg ggatcgccca gcacttcgcc caccgcgccg ctttccacga
      601 tgcggccatg gcgcatcacc gccacccggt cggccatgtc ggccaccacc ccgaagtcat
      661 gggtgatgaa cagcaggccc atttcccgct cggcctggat gcgcttgatc agcgtcagta
      721 tttgcgcctg ggtggtcaca tccagcgccg tggtcggttc gtcggcgatc agaagttgcg
      781 gcgacaagga cagcgccatg gcgatcatca cccgctggcg ctggccgccc gacaattggt
      841 gcggataggc cttgagcaaa cttgccacgt ccgacaagcc catctggccc agcagatcgc
      901 ccgcctgctt cagcgccgcg ctttgcggaa tggcgcgatg ggcgcgaatc tgttcagtca
      961 cctgcttgcc gatggccacc acaggattca gcgctgccat cggatcttga aagatcatgg
     1021 cgatgtcgca gccgcgccgc ttgcgcatcg cctcgggcgg ttgttgcagc agatcgacgc
     1081 cgtcaaacag aatccggccg cccgtcgccg tcacgccgcg cggcagcagg cccatcacgg
     1141 catgcgccgc cagcgacttg cccgagccgg attcccccac aatgcagaca atttcattgc
     1201 gccccacctc caggctgaca tcgtccaccg ccagcgggcg atcggcgccg ggcggcagcg
     1261 ccaccgtcag gttctggatg gataccagtg gcggcatcag tgtctccgcc ggggattgag
     1321 cgcgtcgttc agcccgtcgc cgatgaagtt cagcgccagc accgtcacca tgatggaaag
     1381 accgggcagc accgtggtcc accatgccac ccacatggcc gcgcgcgagc cgccgatcat
     1441 gctgccccag ctcagcaggt tggggtcgcc cagtcccaag aagctcaagg ccgactcggt
     1501 caggatggcg ttgcccacca tcatcgaacc gaccaccaaa atgggcggca gggcattggg
     1561 cagaatttgg gtgaagataa tggcggcatc gcgcatgccc aaggtgcgcg ccgcctggac
     1621 gaattcacgg ctgcgcaacg tgaggaattc cccgcgcacc acccgcgcca cttgcggcca
     1681 ggaaatcagt gcgatgccga tcaccgcgga ggtcaggctg ggctgcagga aggccaccag
     1741 caccatcagc agcacgaagc tgggaatgat ctggaagaat tcggtcaccc gcatcaaaag
     1801 gtcgtccacc agtccgccat aataacccgc caccgccccc agcagcacgc cgatccccac
     1861 tgcgcagagg gtggaggcaa ggccgaccag cagcgaaatg cgcgcgccat aggccaggcc
     1921 caccatcatg ttgcgcccca gcacatcgct gcccgccggc agccccggcg cgccgggcgg
     1981 caacagcggc atgccgacaa tactgaaagg ccctgctgca aagatcagcg gtgccgccag
     2041 cgcgatcacc acaatggccg cgaacaccgc gaagccgaag atggcggtgg gccgggcgaa
     2101 aaagcggcgg gtaaaactc
//
LOCUS       DATMDK010000427         3666 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2048543,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000427 DATMDK010000000
VERSION     DATMDK010000427.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3666)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3666)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3666
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2048543"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..895
                     /locus_tag="VNN98_08240"
     CDS             <1..895
                     /locus_tag="VNN98_08240"
                     /EC_number="2.8.2.-"
                     /inference="COORDINATES: protein motif:HMM:NF012888.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008146 - sulfotransferase activity
                     [Evidence IEA];
                     GO_function: GO:0050656 - 3'-phosphoadenosine
                     5'-phosphosulfate binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="sulfotransferase"
                     /protein_id="HWM62128.1"
                     /translation="QSKAILREAYGPVMAGVESVRMRELRLAAYFRRAPAWRGAAPPP
                     AQRHVFLVGFPRSGTTLLEQVLASHPDVAAMAERTCLMDSAAAFFGSDADLDRLAALP
                     ERELDSWRQAYWRRVAETEPPISKPLFVDKMPLNAVFLPLIAKLFPQAKILLALREPR
                     DVVLSCFRRRFAMNAGMYEFTTPETSAAYYAAVMDLMQVYRETLALDLFEARHESLIE
                     DFAGEVRRLCAFLGLDYRPEMGAFAARAQAQNIDTPSGAQVARGLSDSGVAQWRRYQP
                     QLQPVLAMLAPYVALFGYPEI"
     gene            899..1354
                     /gene="rbfA"
                     /locus_tag="VNN98_08245"
     CDS             899..1354
                     /gene="rbfA"
                     /locus_tag="VNN98_08245"
                     /inference="COORDINATES: protein motif:HMM:NF001802.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006364 - rRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosome-binding factor RbfA"
                     /protein_id="HWM62129.1"
                     /translation="MSRSPPPRRPHTKRGGSDLRGGPSQRQLRVGEMLRHALAEILNR
                     NEIRDPDLDGVSVTITQVKPSPDMRYATVYCEPLGGENAKAIIAALNKHKGFLRGEMG
                     HRIAIKFTPELRFVEDESFAEALKIENILKSERVSRDLAASDEDGEDQD"
     gene            1354..2301
                     /gene="truB"
                     /locus_tag="VNN98_08250"
     CDS             1354..2301
                     /gene="truB"
                     /locus_tag="VNN98_08250"
                     /EC_number="5.4.99.25"
                     /inference="COORDINATES: protein motif:HMM:TIGR00431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004730 - pseudouridylate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(55) synthase TruB"
                     /protein_id="HWM62130.1"
                     /translation="MGRRKKGNPVHGWVILDKPQGLGSTQAVAAVRRIFDAKKAGHAG
                     TLDPMATGILAIALGEATKTVPYAMDADKTYRFTAAWGVSRDSDDAEGKVTGTSDKRP
                     SRAEIEAVLPRFTGPLNQVPPAYSAIKVDGERAYDLARDGEEVILHPRQIQVFEARLL
                     GAETDQAEFEIRCGKGTYVRSWVRDIALALGTLAHVTALRRTRLGGWDEKTAVSLETL
                     TPFMHSPAAFGYLRPLSTALDGIPALAVSGPDTVRIRSGNPILIRANIFAKMKDGFGD
                     GELSGLTVFLKDEEGAPVALAEIAEGELRPFRVFNFSTS"
     gene            2318..2584
                     /gene="rpsO"
                     /locus_tag="VNN98_08255"
     CDS             2318..2584
                     /gene="rpsO"
                     /locus_tag="VNN98_08255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016290650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S15"
                     /protein_id="HWM62131.1"
                     /translation="MITPERKKEVVAENATGKNDTGSPEVQIAILSERITNLTEHFKT
                     HAKDNHSRRGMIKMVSLRRNLLDYVKSKDVKRYEGIIAKLGLRR"
     gene            2781..>3666
                     /locus_tag="VNN98_08260"
     CDS             2781..>3666
                     /locus_tag="VNN98_08260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009567342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyribonucleotide nucleotidyltransferase"
                     /protein_id="HWM62132.1"
                     /translation="MFTIHKETFEWGGRELTLETGKIARQADGSVLATYGETVVLATV
                     VGAPNPKEGVDFFPLTVNYQERYYAAGKIPGGYFKRERGLTERETLISRLIDRPIRPL
                     FADGYRNETLVVAQVLSHDLENDPDVVAMIAVSAALTLSGLPFQGPIGAARVGYIDGE
                     YRLNPPLDDMPNSQLELVVAGTRDAVMMVESEAQELSEEIMLGAVMFGHTEMQHAINA
                     IIRLAEKAAKDPRPVPEDIHAPVRERLKVAASAELTKAFQIADKHKRRDAISAARKTF
                     AETFVGEGDGKVAANVYSG"
BASE COUNT          713 a         1152 c         1140 g          661 t
ORIGIN      
        1 acagtccaag gcaatcctgc gggaggccta tgggcccgtg atggcgggtg tggaaagcgt
       61 gcggatgcgt gagcttcggc tggcagccta tttccgccgc gcgccagcct ggcgcggcgc
      121 cgcgccgccg ccggcgcaac gccatgtttt cctggtgggc tttccgcgtt ccggcaccac
      181 cttgctggaa caggtcctgg ccagccatcc cgacgtcgcg gcgatggccg aacgtacctg
      241 cctgatggat tcggccgccg ccttcttcgg ctccgatgcc gatctcgacc gcctggccgc
      301 gctgccggaa cgtgaactgg actcgtggcg ccaggcctat tggcggcggg tggcggagac
      361 cgaaccgccg atttccaaac ccctattcgt ggacaagatg ccgctcaatg cggtgttcct
      421 gcccctgatc gccaagctgt ttccgcaggc caagattctg ttggccctgc gcgagccgcg
      481 cgatgtggtt ctgtcctgct tccgccgccg cttcgccatg aatgcaggca tgtatgagtt
      541 caccaccccg gagacatccg ccgcctatta cgccgcggtg atggatctga tgcaggttta
      601 tcgcgagacg ctggcgctgg acctgttcga ggcgcggcat gaaagcctga tcgaagactt
      661 tgccggcgag gtccggcggc tgtgcgcttt tctggggctg gattaccggc ccgagatggg
      721 ggctttcgcc gcccgcgcgc aggcgcagaa tatcgacacc ccgtccggtg cccaggtggc
      781 gcggggcctt tctgattcag gcgtggcgca atggcggcgc tatcagccac aactgcaacc
      841 tgttcttgcc atgctggcgc cgtatgtggc gctatttggt tatccggaga tttgagccat
      901 gtcccgttcg cctcctccgc gcaggcccca cacaaagcgc ggcggttccg acctgcgagg
      961 cgggccgtct cagcgccagc tgcgggtggg tgaaatgctg cgtcatgctt tggcggaaat
     1021 tctcaaccgc aacgagatcc gcgatcccga tctggacggc gtgtcggtga ccatcaccca
     1081 ggtcaagcct tcgcctgaca tgcgttatgc cacggtctat tgcgaacccc tgggcgggga
     1141 aaatgccaaa gccatcatcg cggcgctgaa caagcacaaa ggattcctgc gcggcgagat
     1201 gggccaccgg atcgccatca agttcacgcc cgagctgcgc tttgtcgaag atgaaagctt
     1261 cgccgaagcc ctgaagatcg agaacatcct caagtccgag cgcgtcagcc gcgatctcgc
     1321 cgccagcgat gaagacggcg aagaccaaga ctgatgggcc gcagaaaaaa aggtaatcct
     1381 gtccacggtt gggtgatcct ggacaagccg cagggcttgg gctcgaccca ggccgtggcc
     1441 gctgtgcgcc gcatcttcga tgccaaaaag gccggccatg ccggaaccct cgaccccatg
     1501 gcgaccggca tcctggccat cgcgctgggt gaggcaacca agaccgtccc ttacgccatg
     1561 gacgccgaca agacctatcg cttcaccgcg gcctgggggg tgagccgcga cagcgacgat
     1621 gccgaaggca aagttaccgg cacctcggac aaacgcccca gccgggcgga aatcgaggcc
     1681 gtcctgcccc gcttcaccgg accgctgaat caggtccccc cggcctacag cgccatcaag
     1741 gtggacgggg agcgggccta tgacctggcc cgggacgggg aagaagtgat cctgcacccc
     1801 cggcagatcc aggtcttcga ggcccggttg ctgggggcgg aaacggacca agcggagttc
     1861 gaaatccgtt gtggcaaagg cacttacgtc cggtcctggg tgcgcgatat cgccttggcc
     1921 ctgggcactt tggcccatgt cacggccctg cgccggaccc gtttgggggg gtgggacgaa
     1981 aaaaccgctg tgagcctaga aaccctgacc ccttttatgc atagtcccgc cgcttttggg
     2041 tatttgagac ccctttcgac cgcgctggac ggcatcccgg cactggccgt cagtggtccc
     2101 gatacggttc gcatccgatc cggcaacccc atcctcatcc gcgcgaatat cttcgccaag
     2161 atgaaggacg gttttggtga cggcgaactc tccggtctca ctgtctttct caaggatgag
     2221 gagggtgcgc ccgtagcatt ggccgaaatc gccgaaggtg agcttcgtcc gtttcgcgtc
     2281 ttcaattttt caacgtcctg atgtccggaa agaaaccatg attacccctg aacgcaaaaa
     2341 agaagtcgtc gccgaaaacg ccaccggcaa gaacgatacc ggttcgccgg aagtgcagat
     2401 tgcgatcctg tcggagcgca tcaccaacct caccgaacat ttcaagaccc acgccaagga
     2461 caatcattcg cgccgcggca tgatcaagat ggtgtcgttg cgccgcaacc tgctggacta
     2521 tgtgaagtcc aaggacgtga agcgctacga aggcatcatc gcgaagctgg gtctgcgccg
     2581 ctgagttcgc gctgcgcaac agaatggaca cggtcttggg caagaaagcc taaggccgtg
     2641 cttttgcttt tgcgggggat gagctcccgc aaaaactggc cccatagggg ggtcatggag
     2701 cgtcggcgag agccggagcg accaaaataa agaaggcctg cacgcaatat ggcggcgggc
     2761 gatgacgaaa gaaaaatccc atgtttacga tacacaagga aaccttcgag tggggcggcc
     2821 gcgagctgac cctcgagacc ggtaagattg cccgccaggc cgatggttcg gtcctggcca
     2881 cctatggtga aaccgttgtg ctggccactg tggtcggtgc gccgaacccc aaagagggcg
     2941 tggacttctt cccgctcacc gtgaattacc aggaacgcta ttatgccgcc ggcaagattc
     3001 cgggcggcta tttcaagcgc gagcgcggcc tgaccgagcg cgagaccctg atctcgcgcc
     3061 tgatcgaccg ccctatccgt ccgctgttcg ccgacggcta tcgcaatgaa accctggtgg
     3121 tggcgcaggt cctatcccac gacctggaga atgatcccga cgttgtggca atgatcgcag
     3181 tgtcggcggc gttgaccttg tccggcctgc ccttccaggg tccgatcggc gcggcgcgtg
     3241 tcggctatat cgacggcgaa tacaggttga atccgccgct ggacgacatg cccaattccc
     3301 agctggaatt ggtggtcgcc ggtacccgcg atgcggtgat gatggtggaa tccgaagccc
     3361 aggaactcag cgaagagatc atgctgggcg cggtgatgtt cggccacacc gaaatgcagc
     3421 acgccatcaa cgccatcatc cgcttggcgg aaaaggcggc caaggatccg cgcccggtgc
     3481 cggaagacat ccacgccccg gtacgcgaac gcctgaaggt cgcggcgtca gccgaactga
     3541 ccaaggcgtt ccagatcgcc gacaagcaca agcgccgcga cgccatcagc gccgcacgca
     3601 agactttcgc cgaaaccttt gtgggtgaag gcgacggcaa ggttgccgcc aatgtctatt
     3661 ccggcc
//
LOCUS       DATMDK010000428         4511 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2049389,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000428 DATMDK010000000
VERSION     DATMDK010000428.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 4511)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4511)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4511
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2049389"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..265)
                     /locus_tag="VNN98_08265"
     CDS             complement(<1..265)
                     /locus_tag="VNN98_08265"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM62133.1"
                     /translation="MRSMEFQRRHFMLTAAAATGLAAGGATSVWGKTIKHKPLDPVNP
                     DILFGTTSSMWGGAGIGAKQTHDTPWAIKRIAEVGLQGIEFYGD"
     gene            464..1417
                     /locus_tag="VNN98_08270"
     CDS             464..1417
                     /locus_tag="VNN98_08270"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM62134.1"
                     /translation="MRISRKLALGCALVAALAGPALAQQAGTVWYAWSPKPDKLPAYG
                     KNKPVTRLPAVLAKHKGQARWSEQVILTKRYDAKWIQAAPGDKSATIYYGDDRVVWVV
                     WGGQIRFTIEGQQPFVATKGFLVEVPQRVRYSIETISSEPSLRFEVTHTGILPLYAGD
                     QPKPADPPGAHYMKISTPTQPDKYDAVNWPYRDFFKETAADPTGSIKDHLVVGDEANM
                     VNIIRGQGVPTPPASNRGHFHIGDDEFWFILEGRIDYQIEDVGLLTADAGDVVFAAPG
                     RFHRASWALGKSGEKQMDTRLAFNVSPNLFHNFGEDAGGKQ"
     gene            1443..2387
                     /locus_tag="VNN98_08275"
     CDS             1443..2387
                     /locus_tag="VNN98_08275"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM62135.1"
                     /translation="MKLAACALALLALPAPAQDRKVRLDWAPKPDKMPEYGGANKVVT
                     RLSAVLDKHKGQTNWTEEVVQTERYDARWISMAPGEKTRTQFWGDDRTCWVVWGGKIR
                     FTIQGQEPFIATKGFLVQVPLRVPYSIETVGDEPSLRFEVTRGHTLPSYPAGNGEPMP
                     PPKDGQHYVKVSYPSTLVAGGMDSYTDKNKPYLDFVKDVIQKYPTGGSRGGLFMGDYD
                     NQAAIIRGIGVAIPPDSNKGHFHIGNDEFWFILEGKIAYEMEGKGLIVSEAGDVVLAL
                     PGRFHRASFAPGQMDTRLAFNRSPTMQHNFAEDADGKQ"
     gene            complement(2388..3194)
                     /locus_tag="VNN98_08280"
     CDS             complement(2388..3194)
                     /locus_tag="VNN98_08280"
                     /inference="COORDINATES: protein motif:HMM:NF024118.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HWM62136.1"
                     /translation="MTLEVRILGCGSSGGVPRLGEGGPFWGDCDPANPKNRRSRCSIL
                     VARRGPQGETRLLVDTSPDMREQLLAANVGRLDAVLITHDHADQLHGIDDLRVVTMNM
                     KRRLDLWSDHYGLDGVMRKFGYCFQAPPGSDYPPILNAREITEPFADFDIPGAGGPVA
                     VRGFGQRHGRIRSLGYRFGPLAYSPDVDALDEAAFAALEGVECWIVDALRRTPHPSHA
                     HLARTLEWIARVNPKRAILTNMHVDMDYETLRRELPPGVEPAYDGMVVTV"
     gene            complement(3191..3973)
                     /locus_tag="VNN98_08285"
     CDS             complement(3191..3973)
                     /locus_tag="VNN98_08285"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR00010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TatD family hydrolase"
                     /protein_id="HWM62137.1"
                     /translation="MLVDSHCHLDFPDYAGKVDEVVARARAAGVGVCVSIGTELKRFP
                     GVRAVAEQFPDVWCSVGVHPHEAQKELLDDAAALIAEAAHPKVVAIGETGLDYYYEHS
                     PRGPQQENFRSHIAAARQTKLPLIVHTRDADDDTIDILRDEMTKGAFTGLIHCFTGTQ
                     KLADAALELGLYISVSGIATFKNSTALRDVIKSVPLDRLLVETDAPYLAPVPHRGKTN
                     EPALVVHTAAMLAELKGVTPDQLAAATTENFFRLFSKVVRPA"
     gene            complement(3973..>4511)
                     /locus_tag="VNN98_08290"
     CDS             complement(3973..>4511)
                     /locus_tag="VNN98_08290"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM62138.1"
                     /translation="AMLLLLSNTPGRLLPTIRSRCQRLDLRPLDNTVLEKALAEHLPD
                     ASSAERASLARLAGGSIGAALTLASGEGGALAQEADRLIDNAREPDLLALLTLGEKLF
                     RMQDGLELFGSFLVESLSGRIRAKAHAGAPGLERWVALLGRIEQGFARATGLHLEPRQ
                     TVLTAARDLSQVARGGAL"
BASE COUNT          884 a         1443 c         1422 g          762 t
ORIGIN      
        1 cgtcgccgta gaattcgata ccctgcagtc cgacttcggc gatgcgcttg atcgcccaag
       61 gcgtgtcatg ggtctgcttg gcgccgatcc ctgccccgcc ccacatcgag ctggtggtgc
      121 cgaacaggat gtccggattc accgggtcca gcggcttgtg cttgatggtc ttgccccaga
      181 cgctggtggc gccgcctgcc gccaggccgg ttgcggcggc cgcggtcaac ataaagtggc
      241 ggcgctggaa ttccatggaa cgcatccccg gattatttgc gcagacgttt gggcgcagat
      301 gacagtaagt caaggtgctg cgagcgcgca tgccggcaac ttccgtgctg cgttgcaaca
      361 acgcggaagc gcgtcgcatt tacagcattc cgcaaaagtg agactttatc agccgcgccg
      421 cggaagctga caaaaagcgg cggtcggggc tggagtaatg cacatgcgga tttcaagaaa
      481 gctggcgctt ggctgcgcgc tggttgcggc gctggccgga cctgcactgg cacagcaggc
      541 cggaaccgtg tggtacgcct ggtcgcccaa gccggacaag ctgcccgcct acggcaagaa
      601 caagccggtc actcgcctgc ccgccgtctt ggccaagcac aagggccagg cgcgttggag
      661 cgaacaggtt atcctgacca agcgctatga cgccaagtgg attcaggcgg cgccgggcga
      721 caaatccgcc accatctatt atggcgacga ccgcgtggtg tgggtggtgt ggggcggcca
      781 gattcgtttc accatcgaag gccagcagcc tttcgtggcc accaagggct tcctggtgga
      841 ggtgccgcag cgggtgcgtt acagcatcga gaccatcagc agcgaacctt cactgcgctt
      901 cgaagtcacc cataccggca tcctgccgct ctatgccggc gaccagccca agccggccga
      961 tccgccgggc gcgcattata tgaagatcag cacgcccacc cagcccgaca agtatgatgc
     1021 ggtgaactgg ccctatcgcg acttcttcaa ggagacggca gccgacccca ccggcagcat
     1081 caaggatcat ttggtggtgg gcgacgaagc caatatggtc aacatcatcc gcggccaggg
     1141 cgtgcctaca ccgcccgcca gcaaccgcgg ccatttccat atcggcgatg acgagttctg
     1201 gttcatcctg gaaggcagga tcgactatca gatcgaggat gtcggcttgc tcaccgccga
     1261 cgcgggcgat gtggtgttcg cggcgccggg acgcttccac cgcgccagct gggcgcttgg
     1321 caaatcggga gagaagcaga tggacacgcg gctggccttc aatgtcagcc ccaacctgtt
     1381 ccacaatttc ggcgaagacg ccggcggcaa gcagtagggg cgagaataag atgcgaactt
     1441 ccatgaaact cgcggcttgt gctttggccc tgctcgccct ccccgcaccg gcacaagatc
     1501 gcaaggtccg tctcgactgg gcgcccaagc ccgacaagat gccggaatat ggcggcgcca
     1561 ataaagtggt gacgcgcctg tccgcggtgc tggacaagca caaaggccag acgaattgga
     1621 ctgaggaagt ggtccagacc gaacgctatg acgccagatg gatttcgatg gcgccgggcg
     1681 aaaagacccg cacccagttc tggggcgatg atcgcacctg ctgggtggtg tggggcggca
     1741 aaatccgctt caccatacag ggccaggaac cgttcatcgc caccaagggt tttctggtgc
     1801 aggtgccgct gcgcgtgccc tattccatag aaacggtggg cgatgaaccc agcctgcgct
     1861 ttgaagtgac gcgcggccac accttgccgt cctatccggc gggcaatggc gagccgatgc
     1921 cgccgcccaa ggatggccag cattatgtca aagtgagcta tcccagcacc ttggtggccg
     1981 gcggcatgga cagctacacc gacaagaaca aaccgtatct ggatttcgtc aaggacgtga
     2041 tccagaaata tcccaccggc ggatcgcgcg gcgggctgtt catgggcgat tacgacaacc
     2101 aggccgccat catccgcggc ataggcgtgg cgatcccgcc cgacagcaac aagggccatt
     2161 tccatatcgg caatgacgag ttctggttca tcctggaagg caagatcgcc tatgagatgg
     2221 aaggcaaggg cctgatcgtc agcgaagcgg gcgatgtggt gctggccttg ccgggccgct
     2281 tccaccgcgc cagcttcgcg ccgggccaga tggacacacg cctggccttc aaccgcagcc
     2341 cgaccatgca gcacaatttc gcggaagatg cggacggcaa gcaatagcta gaccgtcacg
     2401 accatcccgt cataggccgg ctcgacgccg ggcggcagtt cgcgccgcag cgtctcgtag
     2461 tccatatcga catgcatgtt ggtgaggatg gcgcgcttgg gattcacgcg cgcgatccat
     2521 tccagggtgc gcgccagatg ggcgtggctg ggatggggtg tgcggcgcaa ggcatccacg
     2581 atccagcatt ccacgccttc cagcgccgcg aaggcggcct cgtccagcgc gtccacgtcc
     2641 ggcgaatagg ccagcggccc gaagcgatag cccaggctgc gaatgcgccc gtgacgctgg
     2701 ccgaacccgc gcacggctac cggcccgccc gcgccgggaa tatcgaaatc cgcgaaaggt
     2761 tctgtgatct cgcgggcatt gaggatgggg ggataatcac tgcccggcgg ggcctggaag
     2821 caatagccga atttccgcat caccccgtcc aggccataat ggtcgctcca caggtccagg
     2881 cggcgcttca tgttcatggt gacgacgcgc agatcgtcga tgccgtgcag ctgatcggca
     2941 tggtcgtggg tgatcagcac cgcgtccagc cggccgacat tcgccgccag cagctgctcg
     3001 cgcatgtcgg gcgacgtgtc caccagcaac cgcgtctcac cttgcgggcc gcgccgcgcc
     3061 accagaatgg agcagcggct gcggcggttt ttgggattgg caggatcgca atcgccccag
     3121 aaaggcccgc cctcacccag acgcggcacg ccgccggagg aaccacagcc taaaatacga
     3181 acttccagag tcatgcgggc cgtacgactt tggaaaacag acggaagaaa ttttccgtgg
     3241 tagcggcggc cagctggtct ggcgtcacgc ccttcagctc cgccagcatg gcggcggtgt
     3301 gcaccacgag agcgggctca ttggtcttgc cccggtgcgg taccggcgcc agataaggcg
     3361 cgtcggtttc caccagcagc cgatccagcg gtacgctttt gatcacgtca cgcaaggcgg
     3421 tcgagttctt gaaggtggcg atgcccgata ccgaaatata aagccccagc tccagcgccg
     3481 cgtcggccag tttctgggtg ccggtgaagc aatggatcag gccagtgaag gcgcccttcg
     3541 tcatttcatc gcgcagaata tcgatcgtgt cgtcatcggc gtcacgggtg tgcacgatca
     3601 ggggtaattt tgtttggcgc gctgccgcga tatgggaacg gaaattttcc tgttgcggcc
     3661 cgcgcggcga atgttcgtaa taatagtcca gccccgtctc gccgatggcg accacttttg
     3721 gatgggcggc ctcggcgatc agcgccgccg catcgtccag caattccttt tgcgcctcat
     3781 gcggatgcac gcccacactg caccacacat cggggaattg ttccgccacc gccctcacgc
     3841 cggggaaccg cttcaattcg gtgccgatgc tgacgcaaac acccacaccc gcggcgcggg
     3901 cgcgcgccac gacctcatcg actttcccgg catagtcggg gaaatccaaa tgacaatggc
     3961 tatcgacaag catcagagag cgccgccccg cgccacttga gaaagatcgc gcgcggcggt
     4021 cagcaccgtc tggcgcggtt ccagatgcag gccggtggcg cgggcaaagc cctgctcgat
     4081 ccggcccaac agcgccaccc agcgttccag ccccggcgcg ccggcatggg ccttggcgcg
     4141 gatgcgacct gaaagcgatt ccaccagaaa gctgccgaac agctccaaac cgtcctgcat
     4201 acggaaaagc ttttcgccca gggtcagcag cgccagcagg tccggctcgc gcgcattgtc
     4261 gatcagccgg tcggcttcct gggccaacgc accgccttcg ccgctggcca gagtcagcgc
     4321 ggcgccgata ctgccgcccg ccagccgcgc caaggacgcg cgttcggccg aggaagcgtc
     4381 cggcaaatgt tccgccagcg ctttttccag aacagtatta tccaaaggcc gcaggtccaa
     4441 ccgctggcag cgcgagcgga tggtgggcag cagccggccc ggcgtgttgg acagcagcaa
     4501 cagcatggcg t
//
LOCUS       DATMDK010000429         4114 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_186745,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000429 DATMDK010000000
VERSION     DATMDK010000429.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 4114)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4114)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4114
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_186745"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..320
                     /locus_tag="VNN98_08295"
     CDS             <1..320
                     /locus_tag="VNN98_08295"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HWM62139.1"
                     /translation="NLSGGQKQRISIARALLRQPRIIIFDEATSALDPESEAVVVKNL
                     KQIAKGRTAIVISHRLATIRDADAIIVLDNGMLNDVGNHAQLIQRNFVYNQLWNQQHT
                     GAA"
     gene            317..1699
                     /locus_tag="VNN98_08300"
     CDS             317..1699
                     /locus_tag="VNN98_08300"
                     /inference="COORDINATES: protein motif:HMM:TIGR01843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0030253 - protein secretion by the type I
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HlyD family type I secretion periplasmic adaptor
                     subunit"
                     /protein_id="HWM62140.1"
                     /translation="MSDASFGKQGAKRANDNFRSDPRLERTANEFQSDAAAIEEAPVP
                     LSAHAALYIVLALLITAILWSVIGTVDRIVVAPGKIATRTPMLVMQPFSISRVIEIAV
                     KPGDHVKQGQVLVRFDPAFANADVSSLQQKIASLTAQTERLEAQLSGAPFTAGPEDGP
                     ERNTQGQIYIQEMNDYQAEISQRDSRLAQVDSQVNTDEQALPGIQQQLGMAQRVVDMQ
                     ERLRAQKAAATLDVMKAQSSLIDSQLRLKSTMGDRDKQVAQRAETQHERQAYLEKWRS
                     DHNQQLVQARQDLSEATENMNKASRMHELTELTAPVDGVVQQVADRSAGSVLREAETL
                     VTIVPDGADLYVEANVPSRDVSYLQIGDTVRVKLEAYPFQRFGTVTGVLTVLSPDSQP
                     IKEGDDGSKLVYRAQVRLNDNAGRLAARHIFLKPGLVASAEIKTGTRTIASYMLDPVL
                     RISDESMREP"
     gene            1914..>4114
                     /locus_tag="VNN98_08305"
     CDS             1914..>4114
                     /locus_tag="VNN98_08305"
                     /inference="COORDINATES: protein motif:HMM:NF024907.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VCBS repeat-containing protein"
                     /protein_id="HWM62141.1"
                     /translation="MVTTVIGTPGVNGTSSLTPTAGKKGGAAVYTYNGHIGADSMNIL
                     ATGGNGGSGGNHTGGGTGANGGDGGDANITVNGNIFNSPVGPSLDVITTAIGGNGGLG
                     GTGALSGAQGNGGNATVAINGNIIQTSKLLSEITLDAVAIGGLGTKTGNASATVNGNI
                     IQYSNAVATNVTLDAAALINGPDSPANNGNNAFGTKTATVNGNIVSGNVNNLFLAADA
                     YFSNGTATINGNIFTAKPANTGTVTLEATGQTIAINGNILNLGKQDLDISLNELGPIY
                     SASVSGNIFNGTGTNNLVIAETHNPGPKVPPDTASVNLSAGTFTFNGSSNIINKFGGI
                     ALVGNVQGNFIGTFGNNTLDASGDTTTGTIIFMGNGGTDTLKASATALNVADFAGSDW
                     QYNAPVGPGAHPVSNVIVSTIPGNIIAPNAVIPAASDTLTGTFQRLKFLSPASVSDTN
                     DNGYGDFIFADGSGNLQVYNGGPAVVDSHPGWTVVGTGQFTADTDRNASILLQDATGD
                     LGIESNIAGVPAFTGAILGGPAGVTASTFTGWKAITAGDFNGDAASDVLLQQGPGGPV
                     EIAFMNTVAGQTPGTVDKISAVTSPTGGNWNVISSGDFNGDGNSDILWQNSVTGALDV
                     SLMNGATGTPASIGTLPAGYTAIGTGDFNGDGKSDVLLENTTSGDAQIWLMNGTSQVG
                     SPINVAGPGTTATGWALLGAEDINRDGFSDLLWQNTTSGSVVGQEMTTGGA"
BASE COUNT          873 a         1376 c         1194 g          671 t
ORIGIN      
        1 tcaacctgtc gggcgggcag aagcagcgca tatccatcgc ccgcgctttg ctgcgccagc
       61 cgcgcatcat catcttcgac gaggccacca gcgccctgga ccctgaaagc gaggccgtgg
      121 tggtgaagaa tctgaaacaa atcgccaagg gccgcaccgc catcgtgatc tcgcatcgcc
      181 tggccactat ccgcgacgcc gatgccatta tcgttctcga caacgggatg ctgaacgacg
      241 tgggcaacca tgcccagctg atccagcgca atttcgtcta caaccagttg tggaaccagc
      301 agcatacggg tgcggcatga gcgacgcatc cttcggcaag cagggcgcca agcgggccaa
      361 cgataatttc cgcagcgacc cgcgcctaga acgcaccgcc aatgaattcc agtccgacgc
      421 cgccgcgatc gaggaagcgc cggtgccgct gtcggcccat gccgcgctgt acatcgtcct
      481 ggctttgctg atcaccgcca tcctgtggtc ggtgatcggc acggtggacc gcatcgtggt
      541 ggcgccgggc aagatcgcca cccgcacgcc gatgctggtg atgcagcctt tctccatctc
      601 ccgcgtcatt gagatcgcgg tcaagcccgg cgatcatgtc aaacagggcc aggtgctggt
      661 gcgcttcgac cccgccttcg ccaatgccga tgtcagctcc ctgcagcaga agatcgcctc
      721 gctcaccgcc cagaccgagc ggctggaagc ccagctcagc ggcgcgccct tcaccgccgg
      781 gccggaggac ggacctgaac gcaacaccca gggccagatc tacatccagg aaatgaatga
      841 ctatcaggcg gaaatcagcc agcgcgacag ccgcctcgcc caagttgact cccaggtcaa
      901 taccgatgag caagctcttc ccggcatcca gcagcagctc ggcatggccc agcgcgtggt
      961 cgatatgcag gaacgcctgc gggcgcagaa ggccgccgcc acgctggacg tgatgaaggc
     1021 gcaaagcagc ttgatcgatt cccaactgcg cctgaagagc accatgggcg accgcgacaa
     1081 gcaggtcgcg cagcgcgccg aaacccagca tgaacgccag gcctatctgg aaaaatggcg
     1141 cagcgatcac aaccagcagc tggtgcaggc gcgccaggac ctgtcggaag ccaccgagaa
     1201 tatgaacaag gccagccgca tgcatgagct gaccgaacta accgcgccgg tggatggcgt
     1261 ggtgcagcaa gtcgccgacc gttcggcagg ctcggtgctg cgcgaagccg aaactctggt
     1321 caccatcgtg ccggacggcg ccgatctgta tgtcgaagcc aatgtgccgt cgcgcgatgt
     1381 ttcttacttg cagatcggcg acacggtgcg ggtcaagctg gaggcctatc cctttcagcg
     1441 cttcggcacc gttaccggcg tgctgaccgt gctcagcccc gattctcagc ccatcaagga
     1501 aggcgatgac ggctccaagc tggtctatcg cgcccaggtg cggctgaacg acaatgccgg
     1561 caggctggcg gcgcgccaca tcttcctcaa gcccggcctg gtcgcctcgg ccgagatcaa
     1621 gaccggcacc cgcaccatcg cttcttatat gttggacccg gtgctgcgca tctccgacga
     1681 aagcatgcgc gagccctaga ccgcgattgg gtccaagcgg tgccgacaat cccaaaacat
     1741 ggttaattgc ctaatgcagc ggtttacctg actttccgct gcgtttcaca caactgccaa
     1801 gactgaaacg tcagaatccc cttgccttgc catgtgtttc ataatgagac tccgcaccgg
     1861 gaagaggtgg cgtgcgcctg tgctggcgca tcgcaacaag agggaacggg gtcatggtca
     1921 cgacagtcat tggtacgcca ggcgtaaacg gcacgagcag cttgaccccg acagcgggca
     1981 agaagggcgg cgccgcggtc tacacctata acggccatat cggcgccgac tccatgaaca
     2041 tcctggccac cggcggcaat ggcggtagcg gcggcaatca caccggcggc ggtaccggcg
     2101 ccaatggtgg tgacggcggc gatgccaaca tcaccgtgaa tggcaatatc ttcaattcgc
     2161 ccgtgggtcc aagtctggac gtcatcacca ccgcgatcgg cggcaatggc ggattgggcg
     2221 gcaccggcgc cctgtccggc gcgcaaggca atggcggcaa cgccaccgtc gccatcaacg
     2281 gcaacatcat ccagacctcc aagctgctca gcgaaatcac gctcgacgcc gtcgcgattg
     2341 gcggcctcgg caccaagacc ggcaatgcca gcgcgaccgt caacggcaac atcattcagt
     2401 acagcaacgc cgtcgcaacc aatgtgacct tggacgcggc cgcgctcatc aacggcccgg
     2461 acagcccggc caacaacggc aacaacgcct tcggcaccaa gacggccacc gtcaacggca
     2521 acatcgtttc cggcaacgtc aacaatctgt tcctggcagc ggatgcctat ttctccaacg
     2581 gcaccgccac catcaacggc aacatcttca ccgccaaacc cgccaatacc gggacggtaa
     2641 ccctggaggc caccggtcag accattgcca tcaacggcaa cattctcaat ctcggcaagc
     2701 aggacctgga catcagcctc aacgagctgg gcccaatcta cagcgccagc gtgtcgggca
     2761 acatcttcaa cggcaccggc accaacaatc tggtgatcgc cgaaacgcac aatcccggcc
     2821 ccaaggtgcc gcccgatacc gcatcggtga atctgagcgc cggaacgttc accttcaacg
     2881 gcagcagcaa catcatcaac aagttcggcg gcatcgccct cgtcggcaat gttcagggca
     2941 actttatcgg caccttcggc aacaacacgc tggacgccag cggcgacacc accaccggca
     3001 ccattatctt catgggcaat ggcggcaccg acacgcttaa ggcaagcgcc accgctctca
     3061 acgtggcgga tttcgcgggc tcggactggc agtataacgc gcccgtcggt ccgggcgccc
     3121 atcctgtgag caatgtgatc gtgtcgacga tccccggcaa tatcatcgcg cccaatgccg
     3181 tcattccggc cgccagcgat acgctgacgg gcactttcca gcgcctgaag tttctgtcgc
     3241 cggccagcgt cagcgatacg aatgacaacg gctatggtga ttttatcttt gcggacggtt
     3301 ctggaaacct gcaggtatac aacggtggcc cggcggtcgt ggactcacac cctggctgga
     3361 ctgtggtcgg gaccggtcag ttcaccgccg acaccgatcg caatgcctcg atcctgctgc
     3421 aggacgcgac cggcgatctg ggaatcgaat ccaacatcgc cggcgtaccg gcctttacgg
     3481 gcgcgattct cggcggtcct gccggcgtca cggccagcac ctttaccggc tggaaggcca
     3541 tcaccgccgg tgatttcaat ggcgatgcgg cctccgatgt cctgctgcaa cagggccccg
     3601 gcggcccggt ggaaatcgcc ttcatgaaca cggtcgcggg ccagaccccc ggcacggtgg
     3661 acaagatctc cgccgtcaca agtcccaccg gcggaaactg gaacgtcatc agttccggcg
     3721 acttcaatgg tgacggcaat agcgacattc tctggcagaa cagcgtcacc ggtgcattgg
     3781 atgtctcgct gatgaacggc gccaccggca ctccggcgtc catcggcacc cttcccgccg
     3841 gttacaccgc aatcggcact ggtgatttca atggcgacgg caagagcgat gtccttcttg
     3901 agaacaccac tagcggcgat gcgcagatct ggctgatgaa cggcaccagc caagtcggat
     3961 cgcctatcaa cgtcgcgggc cccggaacca cggcgacggg ctgggcactc ttgggcgccg
     4021 aagacatcaa cagggacggc tttagtgacc ttctgtggca aaacaccacc agcggttcgg
     4081 tggtaggcca ggagatgacg actggcggcg cgat
//
LOCUS       DATMDK010000430         2399 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1578440,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000430 DATMDK010000000
VERSION     DATMDK010000430.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2399)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2399)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2399
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1578440"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(5..265)
                     /locus_tag="VNN98_08310"
     CDS             complement(5..265)
                     /locus_tag="VNN98_08310"
                     /inference="COORDINATES: protein motif:HMM:NF012759.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopantetheine-binding protein"
                     /protein_id="HWM62142.1"
                     /translation="MADKLLDQVAAIWARALGVKKVGADDNFFALGGHSLLGVKLIAE
                     IQAKTGMEEELKLSDLLEFPTLAAFTGHLESLMAPGEESGTL"
     gene            415..747
                     /locus_tag="VNN98_08315"
     CDS             415..747
                     /locus_tag="VNN98_08315"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM62143.1"
                     /translation="MKTIVATLLLVAAASAASPASAAPVCLRTRDIVSTDSKDGKLMT
                     FKMRDGRVLVNHLQGICTDLRFNGFVWTIRGPEEVCERQQSFRVLQSGQICTLGKFDL
                     VKDKRAAR"
     gene            complement(758..1963)
                     /locus_tag="VNN98_08320"
     CDS             complement(758..1963)
                     /locus_tag="VNN98_08320"
                     /inference="COORDINATES: protein motif:HMM:NF025839.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldose 1-epimerase family protein"
                     /protein_id="HWM62144.1"
                     /translation="MKTVSAAALIVCALSCPAWAADHTKVLIDAPSNLATANWKITSA
                     DWGEKGGPAWSVELKTLHGGRQEGVQIIDVDNGAMRFTIVPTRGFEVWKASVGALRLG
                     WDSPVKEIIHPSYIRLNDNGGRGWVAGFGGLMVRGGLASFGNPVQDGDQQLTLHGHVD
                     YIPASHVSVRYAAGRLIFRGVVNDFQTFGAQLQLTSEISTTIGKPAFAFDDAITNQSD
                     APQEMQLLYHTNFGTPLLGAGAEFVAPVKKVQPINAISAAGDLVGWNRYSGPHAPGYA
                     AQVFNMALYSDTSGMTKAMLKSPDGAQGVLMSFDTHGLPYMSLWKNEVTAKDGYVTGL
                     EPGTGFPNTRPEERAAGRVPKLAGGEVYRTHLAIDALTNKSEVTQAAAAIQALAVAPP
                     VIDKSTTGP"
     gene            2080..>2399
                     /locus_tag="VNN98_08325"
     CDS             2080..>2399
                     /locus_tag="VNN98_08325"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM62145.1"
                     /translation="MRKSGIWMGTAFAIALAITVTVLVLRGTDNKSIRLALELTARWS
                     FLLFWLTYAGGALATLFGWAFLAGRGREFGLAFAAAHLVHIGLVVWLYQISIKAPLGF
                     GLAL"
BASE COUNT          408 a          726 c          756 g          509 t
ORIGIN      
        1 ggctttaaag cgtgccggac tcttcgccgg gcgccatcag gctttccaga tgaccggtaa
       61 aggcggcgag ggtgggaaac tccaacaggt cggagagttt caattcttct tccatcccgg
      121 ttttcgcctg gatctcggcg atcagcttca cgcccagcag cgagtggccg cccagggcga
      181 agaaattgtc gtcggcgccc acctttttca cgcccagcgc ccgcgcccag atggcggcga
      241 cctgatccag aagtttgtca gccatgatct catttttcga aaaaacgtct gtgaaatcta
      301 gcgcttccgg aggttttccg ccagcggcga agggctgggc ggaccctata acgcttgtcg
      361 tggggcagga tttggcggac aattgggtgt gcgagggcac agcctggagg tcacatgaaa
      421 acgatcgttg ccaccctttt gcttgtagcc gctgcatctg ctgcgtcgcc cgcttcggca
      481 gcccctgtgt gcttgcggac gcgcgatatc gtcagtaccg actccaagga cggcaagctg
      541 atgacattca aaatgcggga tggccgggtg ctggtcaatc atctgcaggg catctgcacc
      601 gatctgcgat ttaacggctt tgtctggaca atccgcggcc ccgaagaggt ctgcgagagg
      661 cagcagagtt ttcgggtatt gcagtcgggc cagatctgta ccctgggcaa atttgacctg
      721 gtcaaggaca agcgggcggc gcgttaaggg ccggtcccta agggccagtt gtgctcttgt
      781 cgatcaccgg tggcgcgacc gcaagcgctt gaatggcggc cgcagcctgg gtgacttcgc
      841 ttttgttcgt caacgcgtcg attgccagat gcgtgcgata gacttcgccg cccgccagct
      901 tgggcacgcg tccggcggcg cgttcttcgg ggcgcgtgtt gggaaagccg gtgcccggct
      961 caagacctgt cacataaccg tccttggccg tcacttcatt cttccacagc gacatatagg
     1021 gcaggccgtg cgtgtcgaag ctcatcagca cgccctgggc gccgtccggt gatttcagca
     1081 tcgccttggt catgccggat gtatcgctat atagcgccat gttgaaaacc tgcgcggcat
     1141 agcccggcgc atgcggcccg ctatagcggt tccaccccac cagatcgcct gcggcagaga
     1201 ttgcattgat cggctggacc ttcttgaccg gcgcgacgaa ttccgcgccc gcgcccagca
     1261 gcggcgtgcc gaaattggtg tgatacagca gctgcatttc ctgcggcgcg tccgactggt
     1321 tggtgatggc gtcgtcgaag gcgaatgccg gcttgccgat cgtggtggag atttccgacg
     1381 tcagctgcag ttgcgcgccg aaggtctgga agtcgttcac cacgccgcgg aatatcaagc
     1441 gccccgccgc atagcgcaca ctgacatggc tggcgggaat ataatcgaca tggccatgca
     1501 aagtgagctg ctggtcgccg tcctgcacgg gattgccgaa ggaggccaag cccccgcgca
     1561 ccatcaagcc gccaaaccct gccacccagc cccggccgcc attgtcgttc agacggatat
     1621 aggagggatg gataatctcc ttcaccggcg aatcccagcc cagccttagc gcgccgacac
     1681 tggctttcca gacttcaaag ccgcgcgtcg gcacgatggt gaacctcatc gcgccattgt
     1741 cgacgtcgat gatctgcacg ccttcctggc gcccgccatg caaggtcttg agttccacgc
     1801 tccaggccgg gccgcccttt tcgccccagt cggctgaggt aatcttccag ttggcggtgg
     1861 cgaggttgct gggcgcatcg atcagcactt tggtgtgatc ggcggcccag gccgggcagg
     1921 aaagagcgca gacaattagg gcggcggcgg aaacagtttt catggcgttt tccctgaccg
     1981 tttgttgctt ttgtttgcgc catttgcgtc tttcccgcct tcgcttgtca acagcgcgac
     2041 ccgcgcccta gagtgctgcg ggggaagggc agggcgatca tgcggaaatc cggcatctgg
     2101 atgggcacgg ccttcgcgat tgcgctggcg attaccgtca ccgtcctcgt ccttcgcggc
     2161 accgataaca aaagcatccg cctggcgctg gagctgacag cgcgctggtc gttcctgctg
     2221 ttctggctga cctatgccgg cggcgcgctg gccacgctgt tcggctgggc attcctggcg
     2281 gggcgcgggc gggaattcgg cctggctttt gccgcggccc atctggtgca tatcgggctg
     2341 gtggtgtggc tgtatcagat ttccatcaag gcgccgctgg ggtttggctt ggccctgtt
//
LOCUS       DATMDK010000431         6542 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_677820,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000431 DATMDK010000000
VERSION     DATMDK010000431.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 6542)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6542)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6542
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_677820"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..3775
                     /gene="gltB"
                     /locus_tag="VNN98_08330"
     CDS             <1..3775
                     /gene="gltB"
                     /locus_tag="VNN98_08330"
                     /EC_number="1.4.1.13"
                     /inference="COORDINATES: protein motif:HMM:NF008730.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0015930 - glutamate synthase activity
                     [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_process: GO:0006537 - glutamate biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0006807 - nitrogen compound metabolic
                     process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="glutamate synthase large subunit"
                     /protein_id="HWM62146.1"
                     /translation="DDLAKLWPLIGDGNSDSATLDNCLELLLAGGYSLSHALMMMIPE
                     AWSGNALMHADRRAFYEYHAALMEPWDGPAAIAFTDGRHIGATLDRNGLRPARYIVTE
                     DDLVILASESGVLPVPEEKIRRKWRLQPGKMLLIDFEEGRIVEDEEIKQKFSAAEPYE
                     EWLKAAQFKLEDLPDLPEDHRAKANDPSLLLDQQQAFGYTQEDIQFFLEPMATAGDDP
                     IGSMGSDTPIAVLSNKPRLLYNYFKQNFAQVTNPPIDPIREELVMSLVSMIGPRPNLL
                     GRDAGAHKRLEVTQPVLTNADVEKIRSISELVDGAFRTATIDCTWPASEGADGLSNAV
                     QRICLNATDAVLADNNILILSDRAVSADRIPVPALLATAAVHHHLVRQGLRMQTGLVV
                     ETGEAREVHHFCVLAGYGAEAINPYLAFETLEQIRVRQGLALKPYEVQKNYIKAIGKG
                     VLKVMSKMGISTYQSYCGAQIFDAVGLSTDLIQKYFTGTASTIEGIGIKQIAEESVRR
                     HKDAFGDNPIYRNMLDVGGDYAFRLRGEDHAWTPDSVSRLQHAVRGNNPAEYDLFAQT
                     INEQNERFLTLRGLMQFKTGGSIALDEVEPANEIVKRFSTGAMSFGSISREAHTNLAI
                     AMNRIGGRSNTGEGGEESDRFKPLPNGDSMRSAIKQVASGRFGVTAEYLVNADDIQIK
                     MAQGAKPGEGGQLPGHKVDANIAKVRHSTPGVGLISPPPHHDIYSIEDLAQLIRDLKS
                     VNQKARISVKLVSEVGVGTVAAGVAKCRADHVTISGFEGGTGASPLTSLTHAGSPWEI
                     GLAETQQTLVLNGLRGRIAVQVDGGLRTGRDVAIGALLGADEFGFATAPLIASGCIMM
                     RKCHLNTCPVGVATQDPVLRKRFTGQPEHVINYFFFVAEELREIMAGLGFKTVNEMIG
                     RVDMLNMTKAVSHWKAKGIDLSRILYSVTPKPGVAIHHREKQNHGLESSLDHDLIAAS
                     LPSIENGQPVRLERNVRNVDRTIGAMLSGEVARRHGHAGLPEDTISVKFTGTAGQSFG
                     AFLARGVSIELTGDANDYVGKGLSGGRIVVKPPSGLTREPGENIIVGNTVLYGAVAGE
                     AYFHGVAGERFAVRNSGAICVVEGTGDHGCEYMTGGVVAVLGKTGRNFAAGMSGGVAY
                     VFDEDGSFEKRCNLAMVKLEKITASDSADHIDMPKQRSVSVADAGMGDLLRFDAERLR
                     ILVERHLLHTGSPRAKQLLDNWGAALSKFVKVMPSDYAKALADLKARAAIAAE"
     gene            3781..5232
                     /locus_tag="VNN98_08335"
     CDS             3781..5232
                     /locus_tag="VNN98_08335"
                     /inference="COORDINATES: protein motif:HMM:TIGR01317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate synthase subunit beta"
                     /protein_id="HWM62147.1"
                     /translation="MGKITGFLEIERQDRSSEKPELRVHNYREFVLPLPAPEVGKQAA
                     RCMDCGIPFCHQGCPVNNLIPDWNNLVYRDQWRAASESLHSTNNFPEFTGRICPAPCE
                     ASCTLNITDNPVTIKTIECQIVDRGWEEGWVQPVMAPKKTGKTVAVVGSGPAGMAAAQ
                     QLARAGHSVTLFEKTDRIGGLLRYGIPDFKMEKHLIDRRMRQMEAEGVVFRTNVEIGV
                     TVSMDMLLADYDAVVLSGGAEAPRDLPVPGRELDGIHFAMDFLVQQNKRVAGDPESKA
                     APTGTLSAKGKYVVVIGGGDTGSDCVGTSNRHGAASVTQFEIMPQPPARENKLLVWPD
                     WPMKLRTSSSHQEGCERDWSVQTRRAVGEGGKITALECVRVEWQLGDGGQMKLVEVPG
                     SEFTLKADMVLLAMGFVGPKKAGLVEQAGVELDARGNVKAPLTNYQTSKAKVFSCGDM
                     RRGQSLVVWAIREGRQCARGVDEFLMGSSELPR"
     gene            5260..5709
                     /locus_tag="VNN98_08340"
     CDS             5260..5709
                     /locus_tag="VNN98_08340"
                     /inference="COORDINATES: protein motif:HMM:NF025054.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HWM62148.1"
                     /translation="MTIRFAVPSDYAQWLPLWQGYNQFYGRSGETALADDITQTTWAR
                     FFDGNEPMHCLVAEEGGGLLGLAHYLFHRSTIAALPVCYLQDLFTAPQARGTGIGRRL
                     IEAVNQQAVLARASRVYWHTHETNQTAQALYDRLAEKSGFIVYRQIL"
     gene            complement(5743..>6542)
                     /locus_tag="VNN98_08345"
     CDS             complement(5743..>6542)
                     /locus_tag="VNN98_08345"
                     /EC_number="2.7.10.2"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0004713 - protein tyrosine kinase activity
                     [Evidence IEA];
                     GO_function: GO:0004715 - non-membrane spanning protein
                     tyrosine kinase activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="CpsD/CapB family tyrosine-protein kinase"
                     /protein_id="HWM62149.1"
                     /translation="MEKLGPLMPVRVNGAPRAAIVPPIPRAAPRAAPRTTSSGAPVAV
                     WSGPPILGEINDPAQLRAADFVLDYPASKYSHAMARLVRQLEAKPGEEDGAAIVVVTS
                     ADNGESRSAIAVSLARAASKMGKKAILVDCAAQRLSSRAIKAPIKCGLYDVLTGTVPL
                     NQALAKDPRGEAYLLSTPKRPANAVTMFASRPMARLVSVLRGGADFVVIDCGPVCAGP
                     DAAVIARLADATVLVSKRQMLHSPLVANAARILESAKAAPIGIVITK"
BASE COUNT         1216 a         2083 c         2119 g         1124 t
ORIGIN      
        1 cgacgacctg gcgaaattgt ggccgctgat cggcgacggc aactcggact ccgcaacact
       61 cgacaactgc ctggaactgc tgctggccgg cggctactcg ctgtctcatg cgctgatgat
      121 gatgattccg gaagcctggt cgggcaacgc gctgatgcac gccgaccggc gggcgttcta
      181 cgaatatcac gccgccttga tggagccgtg ggacggcccg gccgccatcg cctttaccga
      241 cggccgccat atcggcgcca ccctggaccg caacggcctg cgtcccgcgc gctatatcgt
      301 gaccgaagac gatctggtga tcctggcgtc ggaatccggc gtgctgccgg tgccggagga
      361 gaagatcagg cgcaaatggc ggctgcagcc cggcaagatg ctgctgatcg actttgaaga
      421 ggggcgcatc gtcgaggatg aggagatcaa gcagaaattc tccgccgccg agccgtatga
      481 ggagtggctg aaggcggccc agttcaagct ggaagacctg cccgacctgc ccgaagacca
      541 ccgcgccaag gcgaacgatc cctcgctgct gctggatcag cagcaggctt ttggttacac
      601 gcaggaagac atccagttct tcctggagcc gatggcgacc gcgggcgacg atcccatcgg
      661 ctcgatgggc tccgacacgc ccattgcggt gctgtcgaac aagcccaggc tgctttacaa
      721 ttatttcaag cagaatttcg cccaggtcac caatccgccg atcgatccga tccgcgagga
      781 actggtgatg agcctggtct ctatgatcgg gccgcgcccc aatctgctgg gccgcgatgc
      841 cggcgcgcac aagcgcctgg aagtcaccca gccggtattg accaatgccg atgtggagaa
      901 gatccgctcg atttccgaac tggtggacgg ggccttccgc accgccacca tcgactgcac
      961 ctggccggcc agcgaaggcg ccgacggcct ttccaatgcg gtgcagcgca tctgcctgaa
     1021 cgccaccgac gcggtgctgg ccgacaacaa tattctcatt ttgtcggatc gcgccgtcag
     1081 cgccgaccgc attcccgttc ccgccttgct ggcgactgcg gcggtgcatc atcacctggt
     1141 gcgccagggc ctgcggatgc agaccgggct ggtggtggag accggcgaag cgcgcgaagt
     1201 gcatcatttc tgcgtgctgg cgggctatgg cgccgaagcg atcaatcctt atctcgcctt
     1261 cgaaaccctg gagcagatcc gggtgcgcca aggcctggcg ctcaagcctt acgaagtgca
     1321 gaagaattac atcaaggcca tcggcaaggg cgtgctgaag gtgatgtcca agatgggcat
     1381 ctccacctac cagtcctatt gcggggcgca gattttcgac gcggtgggcc tgtccaccga
     1441 cctgatccag aaatatttca ccggcaccgc ctccaccatc gagggcatcg gcatcaagca
     1501 gatcgccgag gaaagcgtgc gccgtcataa ggatgccttc ggcgacaatc ccatctaccg
     1561 caatatgctg gatgtgggcg gcgattacgc cttccgcctg cgcggcgagg accatgcctg
     1621 gacgccggat tcggtgtcgc gcctgcagca tgcggtgcgc ggcaacaatc cggccgaata
     1681 cgacctgttc gcgcaaacca tcaacgaaca gaacgagcgg tttctgacct tgcgcggctt
     1741 gatgcagttc aagaccggcg gctcgattgc cttggacgag gtcgaacccg ccaatgaaat
     1801 cgtcaagcgc ttctccaccg gggcgatgag cttcggctcc atcagccgcg aggcccatac
     1861 caatctggcc attgccatga accgcatcgg cggccgctcc aataccggcg aaggcggcga
     1921 ggaatccgac cgtttcaagc ccttgcccaa cggcgattcc atgcggtctg cgatcaagca
     1981 ggtggcgtca gggcgtttcg gcgtcaccgc cgaatatctg gtcaatgccg acgatatcca
     2041 gatcaagatg gcccagggcg ccaagcccgg cgaaggcggc cagctgcccg gccacaaggt
     2101 ggacgccaat atcgccaagg tgcgccattc cacccccggc gtcggcctta tttcaccgcc
     2161 gccgcatcac gacatctatt ccatcgaaga cctggcgcag ctgatccgcg acctcaaaag
     2221 cgtcaaccag aaggcgcgca tctcggtcaa gctggtctcg gaagtgggcg tgggcacggt
     2281 ggcggccggt gtcgccaagt gccgcgccga ccatgtcacc atttccggtt ttgaaggcgg
     2341 caccggggcc tcgccgctga cctcgctcac ccatgccggt agcccctggg aaatcggcct
     2401 ggccgaaacc cagcagaccc tggtgctgaa cgggctgcgc ggccgtatcg cggtgcaggt
     2461 ggacggcggg ctgcgcaccg ggcgcgacgt cgccatcggc gcgctgctgg gcgcggacga
     2521 attcggcttc gccaccgcgc ccttgatcgc ctcgggctgc atcatgatgc gcaagtgcca
     2581 tctcaacact tgcccggtgg gcgtcgccac ccaggacccg gtgctgcgca agcgcttcac
     2641 cggccagccc gagcatgtga tcaactactt cttcttcgtg gccgaggaac tgcgcgagat
     2701 catggccggg ctgggcttca agaccgtgaa cgagatgatc ggccgggtgg acatgctcaa
     2761 catgaccaag gcggtttccc attggaaggc caagggcatc gatctgtcgc gcattctcta
     2821 cagcgtcacg cccaaacccg gcgtcgccat ccatcatcgc gaaaagcaga atcacgggct
     2881 ggaatcctcg ctggatcacg acctgatagc ggccagcctg ccgtccatcg aaaatggtca
     2941 gccggtgcgg ctggagcgca atgtccgcaa tgtcgaccgc accatcggcg ccatgctgtc
     3001 gggcgaagtg gcccggcgcc acggccatgc cggcctgccc gaagacacga tcagcgtgaa
     3061 gttcaccggc acggccggcc agtccttcgg tgctttcctg gcgcgcggcg tctccatcga
     3121 gctgaccggc gacgccaatg actatgtcgg caagggcctg tcgggcggcc gcatcgtggt
     3181 caagccgccg tcggggctga cccgcgagcc gggcgagaac atcattgtcg gcaacacggt
     3241 gctgtatggc gccgttgcgg gcgaagccta tttccacggc gtcgcgggtg agcgtttcgc
     3301 ggtgcgcaat tccggcgcca tttgcgtggt ggaaggcacc ggcgatcatg gctgcgaata
     3361 tatgaccggc ggcgtggtgg cggtgctggg caagacgggg cgcaattttg ccgccggcat
     3421 gtcaggcggc gtggcctatg tcttcgacga ggacggcagt ttcgaaaagc gctgcaacct
     3481 ggccatggtc aagttggaaa agatcacggc cagcgacagt gcggatcaca tcgacatgcc
     3541 aaaacaacgt tcggtcagcg tggccgatgc gggcatgggc gatttgctgc gcttcgatgc
     3601 cgaacggctg cgcatcctgg tggagcgcca tttgctgcac accggcagtc cgcgcgccaa
     3661 gcagctgttg gacaattggg gtgcggcttt gagcaaattc gtcaaggtga tgccgtcgga
     3721 ttacgccaag gccttggccg acctcaaggc gcgcgccgcc atcgcggcag agtaaggcac
     3781 atgggcaaga tcacgggctt tctggaaatc gaacgccagg accgcagcag cgaaaagccg
     3841 gaactgcggg ttcacaatta ccgcgaattc gtcctgccgc tgcccgcgcc cgaagtcggc
     3901 aagcaggcgg cgcgctgcat ggattgcggc attcctttct gtcaccaggg ctgcccggtc
     3961 aacaacctga tccccgactg gaacaacctg gtctatcgcg accagtggcg cgccgcttcg
     4021 gagagcctgc actccaccaa caattttccc gaattcaccg gccgcatctg tcccgcgccc
     4081 tgcgaggcca gctgcaccct gaacatcacc gacaatccgg tcaccatcaa aaccatcgaa
     4141 tgccagatcg tcgaccgcgg ttgggaagaa ggctgggtcc agccggtgat ggcgccgaaa
     4201 aagaccggca agaccgtggc ggtggtgggc tccggccctg ccggcatggc ggcggcgcag
     4261 caattggcgc gcgccggtca cagcgtcact ctgtttgaaa aaaccgaccg tatcggcggt
     4321 ctgctgcgct acggcattcc cgacttcaag atggaaaagc acctgatcga ccgccgcatg
     4381 cgccagatgg aagccgaagg cgtggtgttc cgcaccaatg tcgaaatcgg cgtcactgtt
     4441 tcgatggaca tgttgctggc cgattacgac gcggtggtgc tgtcgggcgg ggcggaagcg
     4501 ccgcgcgacc tgccggtgcc ggggcgcgaa ttggacggca tccatttcgc catggatttt
     4561 ctggtgcagc agaacaagcg ggtggcgggc gatcccgaaa gcaaggccgc gcccaccggc
     4621 acgctcagcg ccaagggcaa gtatgtggtg gtgatcggtg gcggcgatac cggttcggac
     4681 tgtgtcggta cctccaaccg ccatggcgcc gcctcggtca cccagtttga aatcatgccg
     4741 cagccgccgg ccagggaaaa caagctgctg gtatggccgg attggcccat gaagctgcgg
     4801 acctcgtctt cgcaccagga aggctgcgag cgcgactggt cggtgcagac ccgccgtgct
     4861 gtcggcgaag gcggcaagat cactgcgctg gaatgcgtcc gggtggaatg gcagttgggt
     4921 gacggcggcc agatgaagct ggtggaagtc cccggcagcg aattcaccct caaggccgac
     4981 atggtgctgc tggcgatggg ctttgtcggg cccaaaaagg ccgggctggt ggagcaggcg
     5041 ggcgtggagt tggacgcgcg cggcaatgtg aaggcgccgc tgaccaacta ccagaccagc
     5101 aaggcgaagg ttttttcctg cggcgacatg cgccgcggcc agtcgttggt ggtatgggcg
     5161 atccgcgaag gccgccagtg cgcgcggggc gttgacgagt tcctgatggg aagctctgaa
     5221 ttgccgcgtt gacgcgccgc tctgacacaa aaggcccccg tgaccatccg cttcgccgta
     5281 ccgtccgact atgcgcaatg gctgccgctg tggcagggct ataaccaatt ttatggccgc
     5341 agcggcgaga ccgcgctggc ggacgacatc acccaaacca cctgggcgcg ctttttcgac
     5401 ggcaacgagc cgatgcattg tctggtggcg gaagagggcg gcggactgct gggcctggcg
     5461 cattacctgt ttcaccgcag cacgattgcc gccctgccgg tctgttatct ccaggacctg
     5521 ttcaccgcgc cacaggcgcg cggcaccggc atcgggcgta ggctgatcga agcggtgaat
     5581 cagcaagcgg tgctggcgcg cgccagccgg gtctactggc atacacacga aaccaaccag
     5641 acggcgcaag cgctctacga cagactggcg gaaaaatccg gctttatcgt ttacaggcag
     5701 attctctgaa tttgtccgga tcgttcgcgc cacggtgcga agtcacttgg tgatgacgat
     5761 tccgatgggc gccgccttgg cgctctccag gattcgcgcc gcattggcca ccagcgggct
     5821 gtgcagcatc tggcgcttgg acaccaacac ggtggcgtcg gccagccgtg cgatcactgc
     5881 cgcatcgggg cccgcgcaca ccgggccgca atcgatcacc acgaaatccg cgccgccgcg
     5941 cagcaccgac accagccgcg ccattgggcg cgaagcgaac atggtgacgg cattggccgg
     6001 ccgtttgggt gtggacagca aataggcttc gccgcggggg tccttggcca gcgcctggtt
     6061 cagcggcacc gtaccggtca gcacgtcata gaggccgcat ttgatcggcg ccttgatcgc
     6121 ccgggacgac aggcgctgcg ccgcgcagtc caccagaatc gctttcttgc ccatcttgga
     6181 cgcggcgcgg gccagggaca ccgcgatggc gctgcggctt tcgccattgt cggccgaggt
     6241 caccaccacg atagcggcgc cgtcttcttc gccgggcttg gcttccagct ggcgcaccag
     6301 cctggccatg gcgtgggaat atttgctggc cggatagtcc agcacgaaat cggctgcccg
     6361 caattgggcc ggatcgttga tctcgcccag gatcggcgga ccgctccaca ccgcgaccgg
     6421 tgctccagaa gatgtggtgc gcggcgcggc gcggggcgca gcgcgcggga tcggcggtac
     6481 gatggcggcg cgcggcgcgc cgttcactcg gaccggcatc aagggtccca gcttctccat
     6541 ca
//
LOCUS       DATMDK010000432         2679 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_3180765,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000432 DATMDK010000000
VERSION     DATMDK010000432.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2679)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2679)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2679
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3180765"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1769
                     /locus_tag="VNN98_08350"
     CDS             <1..1769
                     /locus_tag="VNN98_08350"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HWM62150.1"
                     /translation="TQRINRRLVGGVNSHFNLFDTDWTLQGYYEHGENDTQIHVRGIA
                     LKPYLYAAIDSVQVTAANQATYGTAPLGATVCRSALADAEGCVPFNPFGAPVTEAQKD
                     WLYGGQKWGPGPIQLSHQMQDVADFAVSGTPFEDWAGKVAIAAGATWRQEAYDVRGDG
                     AGNGTIGGSGGAPGSPCNDPLLNCLQGTNWYAGSFHNGQGNYHVIEAFLETNIPLIDS
                     PTWGSANLNISGRHARYSTAGDANTWKVGATWETPIDGLRLRALQSRDIRAPNLSELF
                     AAPTTANGSSNFPAANGNPAGSIQVIQGTYGNPALKPERSINTQVGFVLQPSWLAGFQ
                     FSLDYYRVAVAGAITTVSQQTNVNNCFAGLTQYCSAIITAAGTTPFTFPPQWLQVNTQ
                     FFNVASIVTDGFNLETSYQFSLEDWNVISIPGGFTIRALATYVDKYITNPGVPGGIVV
                     NSAGQNDSNTNGSTPHLKAFLVQTYNADNWQVTLSETWISEGRHNLNWIQCAAGSCPA
                     STLTNPTINDNHVPGIIYFNLGGSYDLSEHWKLYGQVDNLLNKNPPPFYSNSQNPTND
                     GANPQLYDTIGRMFHVGVRVND"
     gene            complement(1766..>2679)
                     /locus_tag="VNN98_08355"
     CDS             complement(1766..>2679)
                     /locus_tag="VNN98_08355"
                     /inference="COORDINATES: protein motif:HMM:NF019619.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HWM62151.1"
                     /translation="LALCLAQGASLILDDAQELAPRVQELMQSFQDVLHTDTFTNLYA
                     GWHSQKAFDLHWDPQEAIVLQLSGKKRWKVYRPTRLHPLKNDVELPQQPAGEPVWEGI
                     MADGDVLYIPRGWWHVAFPLGEPSLHLTVSLTPPTGMDYLGWAVSKLRHYAQVRASLS
                     PDSAAQSADHISRLLAGLVNEQSVSNFLGEWDANIRPSPHIRLPNAPYEQLSVVTDDS
                     RIRLASLHHLFFSAQGENFEFIAGGRLWTVPKSLQPALAKLHNAHAFTVAELAGGLAG
                     PSAKADLFKSLTVLAGAGVILIEKPIS"
BASE COUNT          546 a          885 c          765 g          483 t
ORIGIN      
        1 acacccagcg catcaatcgc cgcctggtcg gcggtgtgaa cagccatttc aacctgttcg
       61 acacggactg gacactgcag ggctattacg agcatggcga aaacgacacc cagatccatg
      121 ttcgcggcat tgccctgaag ccctatctct atgccgcgat cgactccgtt caggtcaccg
      181 cggcgaacca ggcgacctat gggaccgcgc cgctcggcgc caccgtctgc cgcagtgcct
      241 tggcggatgc ggaaggctgc gtgcctttca acccctttgg cgcgccggtc accgaagccc
      301 agaaggattg gctctatggc ggccagaaat ggggtcccgg cccgatccag ctttcgcacc
      361 agatgcagga tgtggcggac ttcgcggtca gcggcacgcc ctttgaagac tgggccggaa
      421 aggtcgccat cgcggccggc gccacctggc gccaggaagc ctatgatgtg cgcggcgacg
      481 gcgccggcaa cggcaccatc ggcggttccg gtggcgcccc cggcagcccc tgcaacgacc
      541 cgctgctgaa ctgcctgcaa ggcaccaact ggtatgccgg cagtttccac aacggccaag
      601 gcaattatca tgtgatcgag gccttcctcg aaaccaacat tcccctgatc gacagtccga
      661 cctggggcag cgccaacctg aatatctctg gccgtcatgc ccgctacagc acggcgggcg
      721 acgccaatac ctggaaggtc ggcgccacct gggaaacgcc gattgacggc ttgcgcctgc
      781 gggccctgca atcgcgcgac attcgtgccc ccaacctcag cgaactgttc gccgcgccga
      841 ccaccgccaa cggttccagc aatttcccgg cggcaaatgg taatcctgcg gggagcatcc
      901 aagttatcca gggtacttac ggcaatcccg cgctgaaacc ggaaaggtcc atcaatacgc
      961 aggtgggctt tgtgctgcag cccagctggc tcgcgggctt ccagttctcg ctggattatt
     1021 accgggtcgc agtggccggg gcgatcacca ccgtctcgca gcagaccaac gtcaacaact
     1081 gcttcgccgg cctcacccaa tattgctcgg ccatcataac ggcagccgga accacgccgt
     1141 ttaccttccc gccgcaatgg ctgcaggtga acacccagtt cttcaatgtg gcgtccatcg
     1201 tgaccgacgg cttcaacctg gagacctcat accagttcag cctggaggat tggaacgtca
     1261 tctccatccc cggcggcttc accatccgtg ccctggccac ctatgtggac aagtacatca
     1321 ccaatcccgg cgtcccgggc ggcattgtgg tgaactcggc cggccagaat gattccaaca
     1381 ccaacggctc cacgccgcat ctgaaagcct tcttggtcca gacctacaat gcggacaact
     1441 ggcaggtcac gctttcagaa acctggattt ccgagggccg ccacaatctc aattggatcc
     1501 agtgtgctgc gggaagctgc cctgcctcga ccctgaccaa tcccacgatc aacgacaatc
     1561 atgtcccggg catcatctac ttcaacctgg gcggttccta cgatctgagc gagcattgga
     1621 agctgtacgg ccaagtcgac aatctgctca acaaaaaccc accgcccttc tattcaaact
     1681 cccagaaccc gaccaacgac ggcgccaacc cgcagctgta tgacaccatc ggccgcatgt
     1741 tccatgtggg cgtgcgcgtc aacgactagc tgatcggctt ttcgatcagg atgacaccgg
     1801 cgccggccag cacagtgagg cttttgaaga ggtcggcttt tgcggaaggc cccgcaagcc
     1861 cgcccgcaag ctccgccacc gtgaaggcgt gcgcgttgtg cagcttggcc agcgccggct
     1921 gaagcgattt gggaacggtc catagccgtc cgcccgcgat aaattcgaaa ttctcgccct
     1981 gtgcggaaaa gaacaggtgg tgcagggacg ccagcctgat ccggctatcg tccgtcacca
     2041 ccgacagctg ctcatagggg gcgttcggca ggcgaatatg gggactgggg cggatattgg
     2101 cgtcccattc gcccaggaaa ttcgatacgg actgctcgtt caccagacca gccagcagcc
     2161 tggaaatgtg gtccgcgctc tgtgccgctg aatccggcga caggctggcg cggacttgcg
     2221 cataatgacg cagcttggag actgcccagc ccagataatc catgccggtg ggcggcgtca
     2281 gcgacacggt aagatgcagg ctgggttcgc ccagcggaaa cgccacatgc caccaaccgc
     2341 gcggaatata aagtacgtca ccgtccgcca tgatgccttc ccataccggc tcgccggcag
     2401 gttgctgcgg cagctcgacg tcgttcttca agggatgcaa gcgggtcggc cggtacacct
     2461 tccaacgttt cttgccggac agctgcagga caatcgcctc ctgcgggtcc cagtgcaggt
     2521 caaaggcttt ctgggaatgc catccggcat agaggttggt gaaagtgtcg gtatgcaaca
     2581 cgtcctggaa cgactgcatc aattcctgca cccggggcgc cagttcctgg gcatcgtcca
     2641 gaatcaggct tgccccttgg gcgaggcaaa gtgccaacc
//
LOCUS       DATMDK010000433         5179 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_425344,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000433 DATMDK010000000
VERSION     DATMDK010000433.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 5179)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5179)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5179
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_425344"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(60..266)
                     /locus_tag="VNN98_08360"
     CDS             complement(60..266)
                     /locus_tag="VNN98_08360"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM62152.1"
                     /translation="MSQLRKITVQVPDALLEKAQAYTGEGVTQTVTAGLKRLASIQAQ
                     QELLKLRGKIKFSVSYDEIKRERE"
     gene            complement(308..1282)
                     /locus_tag="VNN98_08365"
     CDS             complement(308..1282)
                     /locus_tag="VNN98_08365"
                     /inference="COORDINATES: protein motif:HMM:NF008024.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinone oxidoreductase"
                     /protein_id="HWM62153.1"
                     /translation="MIKAIRFEKTGGSDVLQYVDYDLPPPAKGQVQVKHSAIGVNFID
                     TYHRTGLYVLPLPSGLGSEAAGMVTVVGEGVTSFKVGDRVGYFGHAIGSYAQANNVPA
                     DKLVHLPDSLSDEVAAAVLLKGMTAQYLLRRIHPVKAGETIVFHAAAGGVGQIGCQWA
                     KHLGATVIGTTTSPNKVALAKANGCAHVLNTKDAGWEKQVREITGGKGVPVVYDSIGK
                     DTFMAGLDCLSSRGIMVTYGNASGPVDPFSPSILAAKGSLFVTRPTLAHYTRTHAELQ
                     ETADDLFAVIQSGAVKVAINQRFALKDAAKAHDALTGKQTTGATILIP"
     gene            complement(1297..3327)
                     /locus_tag="VNN98_08370"
     CDS             complement(1297..3327)
                     /locus_tag="VNN98_08370"
                     /inference="COORDINATES: protein motif:HMM:NF015168.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin domain-containing protein"
                     /protein_id="HWM62154.1"
                     /translation="MSLNNATSPYLLSHKDNPVRWRTWGPEALAEAKAQDKPILLSLG
                     YAGCHWCSVMDRESFSDAQTAALINDNYIPVLADREERPDLDMLYQGAAGVMNHPGGW
                     PLNIFLKSDGAPFWVTGYLPPEDKQDTPSFRRVVTETAELWKNERARAEDTGGKVREA
                     LELLYNRDMTASQEAMNLDLAALRIAQRYDVFFGGLLSGVKFLNPLLLDVLWRAFLRT
                     GTPQFSQIIFTSLDGMLFGGIYDHVGGGFFRHSLDERWLEPAFEKMLYDNAQMIDVCT
                     QIWQFNRNELCRQRVTETIGFLLREMKVENGFAAAISSGAQADDAKYYTWSEAEIDAA
                     LVGTFSARFKQVYGITRDGNMMGRNLPRRLGNPVPASEADEALLAKQRDVLLLARGKR
                     TAPTRDDRVLANWNGLAIAALARAGKVFDKPEWTELAVTTFDQVVKSLGGEGDRLSHV
                     RGAPGVADDYADMARAALQLWEATGDERFLVPAKAWTKILDDHFWNSQINGYCFYADD
                     AEQLFVRPRMLFDNPAPSVNGTMLVVLTRLAMLTGERDYMTRASTLANTFGSEANRML
                     NGAGGYLVGFEYLINSLVIVVFGHKGNARTQELMRGYWSKPMPNGMIMQLEPGDPLPP
                     GHPVSGRGMEGGQPTAYICQQGNCSNGFTSAAALAEALTLPPQMRGQQQVRA"
     gene            3464..3730
                     /locus_tag="VNN98_08375"
     CDS             3464..3730
                     /locus_tag="VNN98_08375"
                     /inference="COORDINATES: protein motif:HMM:NF040443.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6489 family protein"
                     /protein_id="HWM62155.1"
                     /translation="MKVNIEMEMTPQEARAFMGLPDVAPMQKKMLDEVQARMKQAFDA
                     NDPEGMMRAWMPLSSGFGGGAEAFQKFQKTMWDTAAAMVKKDGK"
     gene            3733..5031
                     /gene="mnmE"
                     /locus_tag="VNN98_08380"
     CDS             3733..5031
                     /gene="mnmE"
                     /locus_tag="VNN98_08380"
                     /EC_number="3.6.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF003661.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis GTPase MnmE"
                     /protein_id="HWM62156.1"
                     /translation="MSDSIFALSSAPGRAGVAVVRVSGPGAGACIQELAGSLPAPRQA
                     VLRRLAFAGAEIDHALLLWFEAPHSFTGEDVAEFHLHGGRAVREALFAALSALGLRPA
                     EPGEFSRRAVENGKLDLTRAEAIADLVDAETPAQLRQALRQHDGALADLYEGWRAALI
                     AALGRAEAAIDFSDDGVGEAEFAAARRAAAEIHQQIQSHMDDAGRGESLREGLRLTIL
                     GPPNAGKSSLINALARRDVAIVSDTPGTTRDVVEARLDLGGYLLQVADTAGVRQTSEP
                     IEAEGVRRALSHARGGMTLLLLDGSADDPRAGLPADLPEPDLIVWNKSDLGFVREGLS
                     ISLKTGAGVSQLVKMLQQKVQQKLETGSDAPALTRPRHRHALAEAAAALRHGLEAPAA
                     HPELLAEDLRLAMRAIGRITGWVDVEELLDFVFRDFCIGK"
BASE COUNT          887 a         1582 c         1740 g          970 t
ORIGIN      
        1 gacatcctgg ccaagcatac cttcaagaaa agcgatcagg gcgctggtat ccgctgcgat
       61 cattcccgct cgcgcttgat ctcatcatag gagactgaaa atttgatctt gccgcgcagc
      121 ttgagaagtt cttgctgtgc ctggatggaa gccaggcgct tcagaccggc cgtcacggtc
      181 tgggtcacgc cctcgccggt ataggcctgt gctttttcca gtaaggcgtc cggcacctgg
      241 actgtgattt tacgaagctg gctcatgcca gtttagatac cagctttgag accggtattc
      301 aagctggtca aggaatcagg atagtcgcgc cggtggtctg cttgccggtg agggcgtcgt
      361 gcgccttggc ggcatccttc aaggcaaagc gctggttgat cgcgaccttc acggcccccg
      421 actgaatcac cgcgaacagg tcgtctgccg tttcctgcag ttccgcatgc gtgcgggtgt
      481 aatgcgccag ggtcggacgc gtgacgaaca gcgagccctt ggccgccagg atggacggcg
      541 agaagggatc aaccggaccc gaggcattgc cataggtcac catgatgccg cgggacgaga
      601 ggcaatccag ccccgccata aacgtgtctt tgccgatgga gtcgtaaacc accggcacgc
      661 ccttgccgcc ggtgatctcg cgcacctgct tttcccagcc tgcgtccttg gtgttcaaga
      721 cgtgggcgca gccattggcc ttggccagcg ccactttgtt cggcgaagtg gtggtgccga
      781 tcacggtggc gcccagatgt ttggcccatt ggcagccgat ctggccgacg ccgccggcgg
      841 cggcatgaaa cacgatggtc tcgcccgcct tcacgggatg aatccggcgc agcagatatt
      901 gcgccgtcat gcctttcagc agaaccgcag cggccacttc atcgctgaga ctgtccggca
      961 gatgcaccag cttgtccgcc ggcacattgt tggcctgcgc ataagatcca atggcgtggc
     1021 cgaaataacc gacccggtcg cccaccttga aactggtgac cccttcgccc accaccgtga
     1081 ccatgcccgc cgcttccgag cccaggccgg acggcagcgg cagcacataa aggccggtgc
     1141 ggtgataggt gtcgatgaag ttcacgccga tggcgctgtg cttgacctgc acctgacctt
     1201 tggcgggcgg cggcaggtcg taatccacat actgcagcac gtcgctgccg ccggtctttt
     1261 cgaaacggat tgccttgatc atatgcgtct ccgaaatcag gcgcgaacct gttgctggcc
     1321 gcgcatctgt ggcggcaggg tcagcgcctc ggccagcgcc gcggcgctgg taaagccatt
     1381 ggagcagttg ccttgctggc agatgtaagc ggtgggctgg ccaccttcca tgccgcggcc
     1441 gctgaccgga tggcccggcg gcaggggatc gcccggctcc agctgcatga tcatgccgtt
     1501 gggcatgggc ttgctccaat agccgcgcat caattcctgg gtcctggcat tgcccttatg
     1561 gccgaagacg acaatgacca ggctgttgat cagatactca aagcccacca gatagccgcc
     1621 ggcgccgttc agcatgcggt tggcttcgct gccgaaggtg ttggccaggg tggaagcgcg
     1681 ggtcatgtaa tcgcgctcgc cggtcagcat cgccaggcgc gtcagcacca ccagcatggt
     1741 gccgttgacg ctgggggcgg gattgtcgaa cagcatgcgc gggcgcacga acaactgctc
     1801 ggcatcgtcg gcatagaaac aatagccgtt gatctggctg ttccagaaat ggtcgtccag
     1861 gatttttgtc caggccttgg cgggaaccag gaagcgctcg tcgccggtgg cttcccacag
     1921 ctgcagcgcg gcgcgcgcca tgtcggcata gtcgtcggcc acgccggggg cgcccctgac
     1981 gtgggacaac ctatcgccct cgccgcccag gctcttcacc acctgatcga acgtcgttac
     2041 cgcaagctcg gtccattcgg gcttgtcgaa cactttgccg gcgcgggcca gggccgcgat
     2101 cgccagcccg ttccagttcg ccagcacgcg gtcgtcgcgg gtcggcgccg tgcgcttgcc
     2161 ccgcgccaat agcaggacgt cgcgctgctt ggccagcagc gcctcgtccg cttcgctggc
     2221 cggcacggga ttgcccagcc ggcgcggcag attgcggccc atcatattgc cgtcgcgggt
     2281 gatgccgtaa acctgcttga agcgggccga gaaggtgccc accagggcgg cgtcgatctc
     2341 cgcctcgctc caggtgtaat atttggcgtc gtcggcctgg gcgccggagg agatggcggc
     2401 ggcgaagccg ttttccactt tcatctcgcg cagcaggaag ccgatggttt cggtgactcg
     2461 ctggcggcac aattcgttgc ggttgaactg ccagatctgg gtgcagacgt cgatcatctg
     2521 cgcattgtca tagagcatct tctcgaaggc gggctccagc cagcgttcgt ccaggctgtg
     2581 acggaagaag ccgccgccga catggtcgta gatgccgccg aacagcatgc cgtcgagcga
     2641 ggtgaagatg atctggctga attgcggcgt gccggtgcgc aggaaggcgc gccacaacac
     2701 gtccagcaac agcggattga gaaacttcac cccgctcagc aggccgccga agaagacatc
     2761 gtaacgttgg gcgatgcgca gcgccgccag gtccagattc atggcctcct gagaggccgt
     2821 catgtcgcgg ttgtagagca gctccagcgc ctcgcgtacc ttgccgccgg tgtcttcggc
     2881 gcgggcgcgc tcgttcttcc acagctcagc ggtctcggtg acgacgcggc ggaagctggg
     2941 cgtgtcttgc ttgtcctcgg gcggcagata gccggtcacc cagaaggggg cgccgtcgga
     3001 tttgaggaag atgttcagcg gccagccgcc gggatggttc atgaccccag ccgcgccctg
     3061 gtagagcatg tccaggtcgg gacgctcctc gcggtcggcc agcacgggga tgtaattgtc
     3121 gttgatcagc gccgcggtct gggcatcgga aaagctttcg cggtccatca cgctgcacca
     3181 gtggcaaccg gcatagccca ggctgagcag gatgggcttg tcctgcgcct tggcctcggc
     3241 cagggcctcc ggaccccagg tccgccagcg gaccggattg tctttgtgcg aaagcagata
     3301 ggggctggtg gcgttgttca ggctcatggg ctcaatccaa taaggtgcgc ggaaggaagc
     3361 ttcccgccgg cccgcttctg tgatgttttt ggggcggggt tacttacctc ggaagagggg
     3421 catcgaaaag gtgggccccc accatttgtc aggagttgcc gccatgaagg tgaatatcga
     3481 gatggagatg accccccaag aggctcgcgc cttcatgggc ctgcccgatg tcgccccgat
     3541 gcagaaaaag atgctggatg aggtgcaggc gcggatgaaa caggccttcg acgccaacga
     3601 tcccgaaggc atgatgcggg cctggatgcc gctatcttcg ggatttgggg gaggcgcgga
     3661 ggccttccag aagttccaga agacgatgtg ggacacggca gccgccatgg tcaaaaagga
     3721 cggcaaatag ccgtgtcaga cagtattttt gccctgtcca gcgcccccgg acgggcgggg
     3781 gtggcggtgg tccgggtctc gggaccggga gctggggcct gtatccagga gctggccggg
     3841 tccctgccag ccccccgcca ggcggtgctg cggcggctgg cttttgcagg cgccgagatc
     3901 gatcatgccc tgctgctgtg gtttgaagcc ccgcacagtt tcaccggtga ggatgtcgcc
     3961 gaatttcatc ttcatggtgg gcgggcggtg cgtgaggccc tgtttgcggc cctgtccgcg
     4021 ctgggcctgc gtccggccga gccgggagag ttcagccgcc gggcggtgga aaacggcaag
     4081 ctggacctga cccgggctga agccatcgcc gatctggtgg atgccgagac cccggctcag
     4141 ttacgccagg cgctgcgcca gcatgatgga gcgctggcgg atttgtacga aggctggcgc
     4201 gccgccctga tcgcggcgct gggccgggcc gaggcggcga tcgatttttc cgatgacggg
     4261 gtgggcgagg ccgaattcgc tgctgcccgg cgcgccgcgg ctgaaataca ccagcagata
     4321 caatcgcata tggatgatgc ggggcggggc gaaagcctgc gggagggcct gcgcctcacc
     4381 attctggggc cgcccaatgc cggcaagtcg tcgctgatca atgccctggc gcggcgcgac
     4441 gtggccattg tctcggacac ccccggcacc acccgcgacg tggtggaggc gcggctggat
     4501 ctgggcggct atctgctgca ggtggccgat accgccgggg tacgccagac ctccgaaccg
     4561 attgaggcgg aaggcgtgcg ccgcgctctg tcccatgccc ggggcggcat gaccctgctg
     4621 ctgctggacg gcagcgccga tgatccgcgt gccggattgc ccgccgatct gccggagcct
     4681 gatctgatcg tatggaacaa gtcagacctt ggctttgtgc gcgagggcct ttcgatctcg
     4741 ctcaagaccg gtgccggtgt ttcgcagctg gtgaaaatgc tgcagcaaaa ggtgcagcaa
     4801 aaattggaga ccggcagcga tgcgcccgcc ctcacccgcc cgcgccatcg ccatgcgctg
     4861 gccgaggcgg cggcggcttt gcggcatggc ttggaagcgc ccgccgcgca tcccgaactg
     4921 ctggccgaag atctgcggct ggcgatgcgc gccatcgggc gcatcaccgg atgggtggat
     4981 gtggaagagc tgctggattt cgtgttccgt gatttctgta tcggtaaatg atattaggca
     5041 ctgagaggca ttgatgaaaa acgcagattt tatagggcta actttgctgc tggcggcgac
     5101 ggcggcgcat gccgatccgc gcgacgaggc attgtcggcg atgctgcgct gttcgggcac
     5161 cagcgacaag gcgcagcgg
//
LOCUS       DATMDK010000434         4278 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_426483,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000434 DATMDK010000000
VERSION     DATMDK010000434.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 4278)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4278)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4278
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_426483"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..176
                     /locus_tag="VNN98_08385"
     CDS             <1..176
                     /locus_tag="VNN98_08385"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HWM62157.1"
                     /translation="GTGLGLAIVKHIISRHQGRLNIESKLGEGSVFTVLLPAAPPEIA
                     LKPAIPEPVTEML"
     gene            243..959
                     /gene="phoU"
                     /locus_tag="VNN98_08390"
     CDS             243..959
                     /gene="phoU"
                     /locus_tag="VNN98_08390"
                     /inference="COORDINATES: protein motif:HMM:TIGR02135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0051049 - regulation of transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate signaling complex protein PhoU"
                     /protein_id="HWM62158.1"
                     /translation="MTEHTVKSFGEQLDALSALVAQMGGLAEAQFAAAIEAISRRDST
                     AAERAVGGDARIDEIQQEIEERALRLLALRQPMAVDLRETLAAIKTAAELERIGDLAK
                     NIAKRALVLNREPPIRLTQSLARMGKAAQNQLKQVLDAFSSRNAEEAETVWNRDGEID
                     EIYNSLFRELLTYMMEDPRTIGLCTHLLFVAKNIERCGDHCTNIAEVVYHMVRAGHLA
                     NNRPKADTTSETSVPYETHA"
     gene            956..1672
                     /gene="phoB"
                     /locus_tag="VNN98_08395"
     CDS             956..1672
                     /gene="phoB"
                     /locus_tag="VNN98_08395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020486556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA];
                     GO_process: GO:0006796 - phosphate-containing compound
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate regulon transcriptional regulator
                     PhoB"
                     /protein_id="HWM62159.1"
                     /translation="MSKPTVLVAEDESALVTLLRYNLEREGYRVLEARDGEEAMLVAA
                     EEQPDLVVLDWMLPQLSGIEVCRRLRGRQETRNVPIIMLTARGEESDRIRGLDTGADD
                     YLTKPFSMTELLARLRAVLRRIRPSLAEDVVAVGDIEMDRAAHRVRRAGTEVHLGPTE
                     YRLLDHLIQHPGRVFSREQLLDAVWGSDVYVEARTVDVHVGRLRKALNIEGAVDPIRT
                     VRSAGYSLDAATVGATTSAA"
     gene            complement(1788..2264)
                     /locus_tag="VNN98_08400"
     CDS             complement(1788..2264)
                     /locus_tag="VNN98_08400"
                     /EC_number="1.11.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004278946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004602 - glutathione peroxidase activity
                     [Evidence IEA];
                     GO_function: GO:0043295 - glutathione binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione peroxidase"
                     /protein_id="HWM62160.1"
                     /translation="MTIYKYTAATLAGEEVGLESWRGRVLLIVNTASACGFTPQYAGL
                     EALYQKLEPQGLTVLGFPCNQFGAQEPGTEAEIGAFCQKNYGVTFPMFAKVDVKGANA
                     HQLFQYLTQAKPGILGTEAIKWNFTKFLIDRDGEPVARYAPQTKPEDLEEPIRKLL"
     gene            complement(2459..2923)
                     /locus_tag="VNN98_08405"
     CDS             complement(2459..2923)
                     /locus_tag="VNN98_08405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020044562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GcrA family cell cycle regulator"
                     /protein_id="HWM62161.1"
                     /translation="MTQANWSDDRVEQLKTLWTEGLSASQIARALGGVTRNAVIGKVH
                     RLGLAGRASPSRSERPRLPMAPKLPSVRSHVPAAPVVEEDPLQLEDGSHATVLTISDR
                     MCRWPIGDPAASEFHFCGHNPKAGSPYCEAHARKAYQPQQARRTDNKGRMTG"
     gene            3204..>4278
                     /locus_tag="VNN98_08410"
     CDS             3204..>4278
                     /locus_tag="VNN98_08410"
                     /inference="COORDINATES: protein motif:HMM:NF002325.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate aminotransferase family protein"
                     /protein_id="HWM62162.1"
                     /translation="MFPALLPTYNRTDVAFVRGEGSYLFAEDGKRYLDLGAGIAVAAF
                     GHANPRLVAALTAQAGKLWHTSNLYRVPGQESLSKKLVENTFADTAFFTNSGTEAIEL
                     AIKMARRYQFVSGHPERFHIVSFEGAFHGRTYAAINAGGNEKYLEGFGPKMPGFDQVP
                     FGDLEAVNKVIGPETAALIIEPLQGEGGVRMVTPDFLRALRKLCDDKGLLLIFDEIQT
                     GLGRTGKFFAYDWLGIIPDIMTVAKALGGGFPVGAVLATAEAAKGMTVGTHGTTYGGN
                     PLAMAVGNEAIDMILEPGFLDHVNKIANYMHQQLGALVAGHPDVFNSVRGQGLMIGLK
                     MKTDAPAFIAAARANGLVVLPAGD"
BASE COUNT          764 a         1389 c         1367 g          758 t
ORIGIN      
        1 ggggcaccgg ccttggcctg gcgatcgtca agcacatcat cagccgccac cagggccggc
       61 tcaatatcga gagcaagctg ggggagggca gtgtctttac cgtcctgctg cccgccgcac
      121 ccccggaaat cgccctaaaa ccagctatcc ccgagcctgt cacggaaatg ttataaaaca
      181 gtcgcatagg agtggcgtga accgcctagc taaggttcgc gtcctgaatg gaaagccgcg
      241 cgatgaccga acataccgtc aagtccttcg gggaacagtt ggacgccctg tccgcgctgg
      301 tggcgcagat gggcggcctg gccgaagccc agttcgcggc ggccatcgaa gctatttccc
      361 ggcgcgacag cacggcggcg gaacgcgccg tgggcggtga cgcccgcatc gacgagattc
      421 agcaggaaat cgaggagcgc gctttgcggc tgttggccct gcgccagccc atggcggtgg
      481 acctgcgcga gaccctggcc gcgatcaaga ccgcggcgga gctggagcgc atcggcgatc
      541 tggccaagaa tatcgccaag cgcgccttgg tgttgaaccg cgaaccgccc atccgcctca
      601 cccagtcgct ggcccgcatg ggcaaggcgg cgcagaacca gctcaagcag gtgctggacg
      661 ctttctccag ccgcaatgcc gaagaagccg agacggtgtg gaaccgcgac ggcgagatcg
      721 acgaaatcta caacagcctg ttccgcgaac tgctgaccta tatgatggaa gatccgcgca
      781 ccatcggcct gtgcacccac ctgttgttcg tggccaagaa tatcgaacgc tgcggtgacc
      841 attgcaccaa tatcgccgag gtcgtgtacc atatggtgcg cgccggccat ctcgccaaca
      901 accgccccaa ggcggatacc accagcgaaa catccgtccc ctacgagacc cacgcatgag
      961 caaacccacc gtcctggtcg ccgaagacga aagcgcgctg gtgactttgc tgcgctacaa
     1021 tctggaacgc gaaggctacc gggtgctgga agcccgcgac ggcgaggaag ccatgctggt
     1081 cgccgccgag gaacagcccg acctggtggt gctggactgg atgctgccgc aactgtcggg
     1141 catcgaggtc tgccgccgcc tgcgcggccg tcaggaaacc cgcaacgtcc ccatcatcat
     1201 gctgacggcg cgcggcgaag aatccgaccg catccgcggc ctcgacaccg gcgccgacga
     1261 ttatctgacc aagcccttct ccatgaccga gttgctggcc cggctgcgcg ccgtgctgcg
     1321 ccgtatccgc cccagcctgg ccgaagacgt ggtcgcggtg ggcgatatcg aaatggaccg
     1381 cgccgcccac cgggtgcgcc gcgccgggac ggaagtgcat ctgggcccca ccgaataccg
     1441 cttgctcgac catctgatcc agcatcccgg ccgggtgttc agccgcgagc agctgctgga
     1501 cgcggtgtgg ggcagcgatg tctatgtcga ggcgcgcacc gtggacgtgc atgtcgggcg
     1561 gttgcgcaag gccctgaaca tcgaaggcgc cgtcgatcct attcgcacgg tgcgttcggc
     1621 gggatattca ctggatgcgg cgactgtcgg cgccacgaca tcggccgcat aaacccgccc
     1681 ttgtcatggc ccgtctctac gctgtcgcta gggactatgc gggccatcca tacggttggc
     1741 agggttatgg atggcccgga caagccgggc catgacgaaa tggtggctta gagaagcttc
     1801 ctgatcggct cttccagatc ttccggctta gtttgaggcg cataacgcgc caccggctcg
     1861 ccgtcgcggt cgatcaggaa tttggtgaaa ttccatttta tcgcctcggt gcccagaatg
     1921 cccggcttgg cctgggtgag atactggaac agctggtgcg cgttcgcgcc cttgacgtcc
     1981 accttggcga acatgggaaa cgtcacgccg tagtttttct ggcagaaggc gccgatctcc
     2041 gcctccgtgc cgggctcctg ggcgccgaac tggttgcagg gaaagcccag caccgtcagg
     2101 ccctgcggct ccagcttttg gtacagcgct tccagcccgg catattgcgg ggtgaagccg
     2161 caggcgctgg cggtgttgac gatcagcagc acgcggccgc gccagctctc cagcccgact
     2221 tcttcgcccg ccaaggtggc ggcggtgtat ttgtagatgg tcatggcggg gatgctgcca
     2281 cgacaattgc gacgggcgct agtgtcctga acaggaagtt cgcaccaata atgtcatccg
     2341 ccgtgaatgc ggcggaccca ggtgaaaccc tgcatcgccg ctgcatgtgc cacctgggtg
     2401 gcccgcattc gcgggccatg acactgttgt ttgaatgcgg ccagcttctg attgggcgct
     2461 agccggtcat cctacctttg ttatccgtcc ggcgcgcctg ttgcggctgg taggccttgc
     2521 gggcatgggc ttcgcaatag ggcgagcccg ccttgggatt gtggccgcag aagtggaatt
     2581 ccgacgccgc cggatcgccg atcggccagc ggcacatgcg gtcgctgatg gtcagcaccg
     2641 tggcgtggct gccgtcttcc agctgcagcg gatcttcctc caccaccggg gcggcgggga
     2701 catggctgcg gacgctggga agcttgggcg ccatgggcag gcgcgggcgt tcgctgcggg
     2761 acgggctggc gcggcccgcc aggcccagcc tatggacctt gccgatcacc gcgttgcggg
     2821 tgacgccgcc caaggcgcgg gcgatctggc tggccgagag gccctcggtc cataatgtct
     2881 tgagctgctc gacccggtca tccgaccaat ttgcctgtgt catggctatc gctcctggct
     2941 accagggcag gttcggttaa ccccccggtt actagataca gtatccttgg cccggcgccg
     3001 cacaagcgtt gcggtactgt caccagtcct tgtccacatg aatccgcgcc cctccgcccg
     3061 cggtcccgga ggcgccggaa agggcgcata ggagccatgc ccctcaccgg cggggttgtc
     3121 ggaacgtcac ggaaagcaga taaacaggga atcccagcct cgatttgtat ttttatttca
     3181 atcccaccag aggagtccca tccgtgttcc ctgctttgct tcccacctat aaccggacgg
     3241 atgtcgcctt cgtccgcggc gagggctcgt accttttcgc cgaggatggc aagcgatacc
     3301 tggacctggg agcgggcatc gcggttgccg cctttggcca cgccaacccg cgcctggtgg
     3361 cggccctgac cgcgcaggcg ggcaagctgt ggcacacctc caatctctac cgggtgccgg
     3421 gccaggaaag cctgtcgaaa aagctggtcg agaacacctt cgccgacacc gccttcttca
     3481 ccaattcggg caccgaggcg atcgaactcg ccatcaagat ggcgcggcgc taccagttcg
     3541 tcagcggcca tcccgaacgc ttccatatcg tcagcttcga gggcgccttt cacggccgca
     3601 cctatgctgc gatcaatgcc ggcggcaatg aaaaatacct ggaaggcttc ggccccaaga
     3661 tgccgggctt cgaccaggta ccgtttggcg atctggaggc ggtgaataaa gtcatcgggc
     3721 ctgagaccgc cgccctgatc atcgagccgc tgcaaggcga gggcggcgtg cgcatggtga
     3781 cgccggactt cctgcgcgcc ctgcgcaaat tgtgcgacga caagggcctg ctgctgatct
     3841 ttgacgagat ccagacgggc ctgggccgca ccggcaagtt cttcgcttat gactggctgg
     3901 gcatcatccc cgacatcatg accgtggcca aggcgctggg cggcggcttt cccgtcggcg
     3961 cggtgctggc cactgccgag gccgccaagg gcatgaccgt gggcacccac ggcaccacct
     4021 atggcggcaa cccgctggcc atggcggtgg gcaacgaagc catcgacatg atcctggagc
     4081 ccggcttcct cgatcacgtc aacaaaatcg ccaattacat gcatcagcag ctcggcgcgc
     4141 tggtggcggg ccatcccgat gtgtttaaca gtgtgcgcgg ccagggcctg atgatcgggc
     4201 tgaagatgaa gaccgatgct cccgccttca tcgccgccgc gcgggccaac ggcttggtgg
     4261 tgctgccggc gggcgata
//
LOCUS       DATMDK010000435         4374 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1823208,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000435 DATMDK010000000
VERSION     DATMDK010000435.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 4374)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4374)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4374
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1823208"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1468)
                     /gene="topA"
                     /locus_tag="VNN98_08415"
     CDS             complement(<1..1468)
                     /gene="topA"
                     /locus_tag="VNN98_08415"
                     /EC_number="5.6.2.1"
                     /inference="COORDINATES: protein motif:HMM:TIGR01051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003917 - DNA topoisomerase type I (single
                     strand cut, ATP-independent) activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA];
                     GO_process: GO:0006265 - DNA topological change [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type I DNA topoisomerase"
                     /protein_id="HWM62163.1"
                     /translation="MNVLIVESPGKVKAINKYLGADYKVLASFGHIRDLPSKDGSVKP
                     DDDFSMTWDVDARAASKIKDIAAAMKGADKLILATDPDREGEAISWHILEVLKDRKVL
                     GKIPVERVVFNAVTKSAILEAIQHPRELNQELVDAYLARRALDYLFGFTLSPVLWRKL
                     PGARSAGRVQSVALRLVVEREQEIEAFRAQEYWSIDTDLAASSGNFAARLIQLDGKKI
                     EKMSLTNEAEANRAVAAISAQKFAVGSVEAKPVKRNPSPPFITSTLQQEASRKLGFNA
                     KRTMQIAQGLYEGVEIGGDVTGLITYMRTDGVTMVPEAVNEAREVIGKKYGPRHVPSS
                     ARVYVSKAKNAQEAHEAVRPTSFARTPEDMARYIDGDAAKLYELIWKRAVASQMESAE
                     QERTTVDVISADKQIVLRATGTVTLFDGFLTLYLEGQDDETDEDGSKLPKVAAGDKTE
                     VENVTPAQHFTEPPPRYSEASLVKRLEELGIGRPSTYAS"
     gene            complement(1868..2434)
                     /locus_tag="VNN98_08420"
     CDS             complement(1868..2434)
                     /locus_tag="VNN98_08420"
                     /inference="COORDINATES: protein motif:HMM:NF038013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetate uptake transporter"
                     /protein_id="HWM62164.1"
                     /translation="MADTANPAPLGLMGFGLTTVLLSSVNAGLLPAGGEPVVIPLAMA
                     FGGTAQIIAGIMEFKTGNVFGATAFTSYGAFWWWFALLVLLGGNHILDLSGAGSAIGV
                     CLLLWGVFTLGLWVSTFRLSRLLFGIFLTLWIAFFLLGGGAVLGNPMLHQAGGWVGLL
                     CGALAMYGSFAIVTNATYGREVVPIGSR"
     gene            complement(2482..3576)
                     /gene="dprA"
                     /locus_tag="VNN98_08425"
     CDS             complement(2482..3576)
                     /gene="dprA"
                     /locus_tag="VNN98_08425"
                     /inference="COORDINATES: protein motif:HMM:TIGR00732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009294 - DNA-mediated transformation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-processing protein DprA"
                     /protein_id="HWM62165.1"
                     /translation="MLSDSERRAWLRLARTENVGPVTFHNLIARFGSASAALEELPRL
                     AKRGGGKNFVLPDEGDCDREFEALAKLGGRMIASCEADYPRGLKALEAPPPLISVLGH
                     PHLLQKEMVAIVGARNASALARKFADILSRELGFAGLVVVSGLARGIDAAAHEAALAV
                     GTAAVVAGGVDIVYPPENEKLYAAIKNQGVIVSEMRLGEAPQARHFPRRNRIISGLAR
                     GVVVVEAAEKSGSLITAQCALEQGREIFAVPGSPLDPRARGANRLIREGATLTESAED
                     ILSVLAPILGGGFGEPETQAPSPAFAALEAEADRIRARVEEALGPAPVEIDELIRQIG
                     APAAAVLTVILELELAGRCARQPGNRVCWL"
     gene            complement(3566..4210)
                     /gene="plsY"
                     /locus_tag="VNN98_08430"
     CDS             complement(3566..4210)
                     /gene="plsY"
                     /locus_tag="VNN98_08430"
                     /EC_number="2.3.1.15"
                     /inference="COORDINATES: protein motif:HMM:TIGR00023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0008374 - O-acyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006654 - phosphatidic acid biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate 1-O-acyltransferase PlsY"
                     /protein_id="HWM62166.1"
                     /translation="MTGREKAGIVAAMAAGISFHFGLALALGYLLGTIPFGLFFTWAS
                     GAGDVRKIGSGNIGATNVLRSGKRWAAAATLLCDAAKGAAAVLLARHFLGHDAEVFAA
                     LGAVLGHLFPVWLRFKGGKGVATFLGVCFALYWPVGLLVAATWLGAALVWRISSLSAL
                     IAIALSSAYFLLLHQDFYAALALILSALITFMHRDNIRRLLRGTEPRIGAKRAQ"
     gene            complement(4260..>4374)
                     /locus_tag="VNN98_08435"
     CDS             complement(4260..>4374)
                     /locus_tag="VNN98_08435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012253152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="IS110 family transposase"
                     /protein_id="HWM62167.1"
                     /translation="RLVAAGKPKMLAIIAVARKLLTILNAILRDKNPWQNA"
BASE COUNT          838 a         1390 c         1369 g          777 t
ORIGIN      
        1 tcgaggcata ggtcgagggc cggccgatgc ccaattcctc cagccgcttg accaggctgg
       61 cttcggaata gcgcggcggc ggctcggtga aatgctgcgc cggggtgacg ttttcgacct
      121 cggtcttgtc gccggcggcc accttgggca gcttggagcc gtcctcatcc gtctcgtcgt
      181 cctggccttc caagtacaaa gtaagaaagc cgtcgaacaa ggtcacggtg ccggtggcgc
      241 gcaggacgat ctgcttgtcg gcggagatca catccaccgt ggtgcgttcc tgctcagccg
      301 attccatctg gctggcgacg gcgcgcttcc agatcagttc gtacaatttg gcggcatcgc
      361 catcgatgta gcgcgccatg tcctcaggcg tgcgggcgaa gctggtgggg cgcaccgctt
      421 catgggcttc ctgggcgttc ttggccttgc tgacatagac gcgggccgat gacgggacat
      481 ggcgcgggcc gtatttcttg ccgataacct cgcgggcttc gttgaccgct tcgggcacca
      541 tggtgacgcc atcggtccgc atataggtga tcaggccggt gacgtcgccg ccgatctcga
      601 caccttcata caggccttgt gcgatctgca tggtgcgctt ggcgttgaag cccagcttgc
      661 gcgaggcttc ctgctgcagg gtcgaagtaa taaagggcgg cgaggggttg cgcttgaccg
      721 gcttggcctc gacgctgccc acggcgaatt tctgcgcact gatcgcggcc acggcgcggt
      781 tcgcctcggc ctcgttcgtc agcgacattt tttcgatctt tttgccgtcc agctggatca
      841 ggcgggcggc gaaattgccc gatgacgcgg ccaggtcggt gtcgatgctc caatattcct
      901 gcgcccggaa ggcttcgatt tcctgttcgc gctccaccac caggcgcaga gccacgctct
      961 gcacccggcc cgccgagcgc gcacccggca gtttgcgcca caacaccggc gaaagcgtaa
     1021 agccgaacag atagtccagg gcccggcgcg ccagataggc gtccaccagt tcctgattca
     1081 attcgcgcgg atgctggatg gcttccagga tcgcggattt ggtgacggcg ttgaacacca
     1141 cccgctcgac cgggatcttg cccaacacct tgcggtcctt gagcacttcc aatatgtgcc
     1201 agctgatggc ctcgccctcg cggtcggggt cggtggccag aatcagcttg tcggcgccct
     1261 tcatggcggc cgcgatgtcc ttgatcttgg aggcggcgcg ggcgtcgaca tcccaggtca
     1321 tggaaaaatc gtcgtccggt tttaccgagc cgtccttgga gggcaggtcg cgaatatgcc
     1381 cgaagctggc cagcacctta taatcggcgc ccagatactt attgatggct ttgaccttgc
     1441 cgggggactc gacgatcagg acattcatct aggaaacgga acctaatttg gggtgagaga
     1501 ggcatatctg gggtcgggcg gtcgatctgc aaagggggca gccggtgggg tcggccaaac
     1561 ggggcgggac actggtcgaa gccgcggccg cctgtcaacg caggtgaagc ggagaaatgt
     1621 aaccggtaat tgtatttgtt cgataatatg ctgttgtatg taaccatagg ttgttaattc
     1681 atggctcgct tcctatggtt aagcatcgaa tccttacgaa atcatgatgc tatggtcgca
     1741 ccaaagcccg atccggacgg caaaacgcgc cgcctgaaca gatttccgtc atgaaatcag
     1801 tctcttacac atccagtgcg aaaaaagccg gcgcccaggg ccaaaagacc atgggcgtgc
     1861 agatctccta gcggctgccg atcggcacca cttcccggcc ataggtggcg ttggtgacga
     1921 tggcgaagct gccatacatg gccaaggcgc cgcagagcag gcccacccag ccgcccgcct
     1981 gatgcagcat cggattgccc agcaccgccc cgccgcccag caggaagaag gcgatccaca
     2041 gggtcaggaa gatgccgaac agcagccgcg acaaacggaa agtcgaaacc cacagcccca
     2101 gggtgaacac gccccacaac agcaggcaca caccgatggc gctgcctgcg cccgaaagat
     2161 cgaggatgtg attgccgccc agcagcacca gcaacgcgaa ccaccaccaa aaagctccat
     2221 agctggtgaa ggcggtggcg ccgaagacat tgccggtctt gaactccata atgccggcga
     2281 tgatctgcgc cgtgccgccg aaggccatcg ccaagggtat caccaccggc tcgccgcccg
     2341 cgggcaacag ccccgcattg acgctgctca aaagcacggt ggtgagcccg aagcccatca
     2401 gccccagcgg agcggggttt gcggtgtctg ccattgaatg cctcccaatt tttgtttttg
     2461 tgaaaacaaa ctagccgtct tttaaagcca gcacacccga ttcccgggct ggcgggcgca
     2521 gcgtccggcc aactccagtt ccaggatcac ggtcagcacg gcggcggctg gggcgccgat
     2581 ctggcggatc agttcgtcga tctccaccgg ggcggggccc agcgcttctt cgactcgtgc
     2641 gcggatgcgg tcggcttccg cttccaacgc ggcgaaggcg ggcgagggcg cttgtgtttc
     2701 cggttcgcca aagccgccgc ccaatatggg cgccagcact gacaaaatgt cttccgcgct
     2761 ttcggtcagg gtggcgcctt cgcggatcag ccggttggcg ccgcgcgccc gcgggtccag
     2821 cggcgagccc ggtaccgcga aaatctcacg cccttgttcc agggcgcatt gggcagtgat
     2881 cagcgaaccg gatttttccg ccgcctccac caccaccacg ccgcgcgcca ggccggagat
     2941 gatgcggttg cggcggggga agtggcgggc ctggggcgct tcgcccaggc gcatttccga
     3001 aacgatcacg ccctggttct tgatcgcggc atagagtttt tcattctcgg gcggatagac
     3061 gatgtcgacg ccgccagcca cgacggcggc agtgcccacc gccagcgccg cttcatgggc
     3121 ggcggcgtca atgccgcgcg ccaggcccga caccaccacc agcccggcaa agcccagctc
     3181 gcgcgacaat atatccgcga atttgcgggc cagggcgctg gcattgcgcg cgcccactat
     3241 ggcgaccatt tctttctgca gcagatgagg atggcccagc acactgatca agggcggtgg
     3301 cgcttccaac gccttaaggc cgcgcggata atccgcctcg caagaggcga tcatgcggcc
     3361 gcccagcttt gccagcgctt cgaattcgcg gtcgcaatca ccttcatccg gaagcacgaa
     3421 atttttgccg ccgccccgtt tcgccaggcg cggcagttct tccagcgccg ctgaggccga
     3481 gccgaagcga gcgatcaggt tgtgaaaggt gacggggccg acattttccg tgcgcgccag
     3541 ccggagccaa gcgcggcgtt cgctatcact gagcacgctt ggccccaata cgcggttcgg
     3601 tgccgcgcag cagccggcgg atattgtcgc gatgcatgaa agtgatcagc gccgacagga
     3661 tcagcgccag cgctgcatag aaatcttgat gcagcagcag gaaataggcg gaagacagcg
     3721 cgatggcgat cagtgccgac aaggacgaga tgcgccacac cagcgccgcg cccagccagg
     3781 tcgccgccac caacaggccg accggccaat acagcgcaaa gcacacgccc aggaatgtcg
     3841 ccacgccttt gccgcccttg aagcgcagcc agaccggaaa cagatgtccc agcacggcgc
     3901 ccaacgcagc gaaaacctcc gcatcgtgac ccaggaaatg gcgcgccagc agcaccgccg
     3961 ccgcgccctt ggccgcgtcg cacaacaagg tggccgcggc cgcccaacgc ttgccgctgc
     4021 gcagcacatt ggtggcgccg atattgccag agccgatctt gcgcacatcg cccgcgcctg
     4081 atgcccaagt gaaaaacagg ccgaaaggga tggtgccgag cagatagccc agcgccaggg
     4141 ccagcccgaa atgaaaagaa atccccgccg ccatggcggc gacgatgcca gccttttctc
     4201 gacctgtcat ccccggcgag cgatgcgcag catcgcgagg gaagcgactg tcttatgtgt
     4261 caagcgtttt gccatgggtt tttgtctctg aggatggcgt tgaggatggt caggagcttt
     4321 ctggccacgg cgatgatggc gagcattttg ggttttccgg cggcgacgag gcgg
//
LOCUS       DATMDK010000436         2053 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2486911,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000436 DATMDK010000000
VERSION     DATMDK010000436.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2053)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2053)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2053
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2486911"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(153..881)
                     /locus_tag="VNN98_08440"
     CDS             complement(153..881)
                     /locus_tag="VNN98_08440"
                     /inference="COORDINATES: protein motif:HMM:NF016236.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VacJ family lipoprotein"
                     /protein_id="HWM62168.1"
                     /translation="MKISLPVISALALSLVLGACSTPSPESLAQNDPWEKTNRDIFDF
                     DVRLDHAVARPIAKGYRAAVPEPVRDGIHNALSNLNSPVVLANDVLQGDGDKAVDTAG
                     RIVINSTVGLGGLIDVASKIGIPGHDNDFGITLGKNNIAEGSYLVLPFAGPLPPRDLL
                     GVAVDQAFDPLTYVRFHGKDTWMVVRFGIGILDARASTLDAVETIERSSIDFYATTRN
                     LYRQSRNAKINGGKTGATDDLPNL"
     gene            complement(1196..1936)
                     /locus_tag="VNN98_08445"
     CDS             complement(1196..1936)
                     /locus_tag="VNN98_08445"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HWM62169.1"
                     /translation="MNRIAMITGAGSGVGRAVAQALAHEGWQLALVGRKQDTLEETAK
                     GLAGDHLIAPADVGDPAAVKAVFARIKEKFARLDMLFNNAGMGTPAIPIEELSFAQWQ
                     AIVGVNLTGAFLCTQEAIRMMKAQDPRGGRIINNGSISADRPRPHSAPYTATKHAITG
                     LTKSTILDGRPFDITAGQIDIGNAATEMTQRMTEGVLQPDGSKAVEPRMDVRHVAEAV
                     AYMAGLPLEANVPFMTVMATKMPLFGRG"
BASE COUNT          382 a          624 c          662 g          385 t
ORIGIN      
        1 aatcgctggt accacggcat gatgggcgac aagcccgaag accatggcag cgcgccggcg
       61 ccggcggaat agaaacttgt catgcccggt ccgcgctacg cgcggccgga gtacgggaat
      121 gacaagagcg aggcgtcaac aacgcgttca gatcacagat tcggcagatc gtccgtggcg
      181 ccggtcttgc cgccattgat tttggcgttg cgactctggc gatacaggtt gcgggtcgtc
      241 gcataaaaat cgatggacga gcgttcgatg gtctccaccg cgtccagggt cgaggcgcgg
      301 gcgtccagga tgccgatgcc gaaacgcacc accatccagg tgtccttgcc atggaagcgg
      361 acataggtga ggggatcgaa agcctggtct acggccacac ccagcaggtc gcggggcggc
      421 agcgggccgg cgaagggcag caccagatag gagccctcgg cgatattgtt cttgcccagg
      481 gtgatgccga aatcattgtc gtggccggga atgccgatct tgctggcgac atcgatcagc
      541 ccgcccaggc caacggtgga attgatcacg atgcggcccg cggtatcgac ggccttgtcg
      601 ccatcgccct gcagcacatc attggccagc accaccggag aattcaggtt gctcagggca
      661 ttgtggatgc cgtcacgcac cggttcgggc accgcggcgc gatagccctt ggcgatgggg
      721 cgggcaaccg catggtccag ccgcacgtcg aagtcgaaga tgtcccggtt ggtcttttcc
      781 caggggtcat tctgggcaag cgattccggg ctgggggtgc tgcacgcgcc caggaccaag
      841 ctaagagcaa gagccgagat gaccggaaga gagattttca tgaccaccaa ataccaggaa
      901 tcaaaataaa ataacgttac cgccgagtcc tataacgctc aatatcggta ttcgtaccgc
      961 gctgcacaag gggccggctg attccttccc ctgcggcgga ctgccccgcc aatcccattc
     1021 ttggacgcat aaatccgcac tgccttggtg gtcatacggg ggcggttcgc gagcggatca
     1081 gtcacgaggc cgtggcggat ttgctacagg gcgagacgga ccgagggtgc caagggccga
     1141 ccccgggggg cggcttttcg agacaatcac aaaagttacg gcaggccggc cgccctcatc
     1201 ccctgccgaa cagcggcatc ttggttgcca tgacggtcat gaacggcacg ttagcctcca
     1261 gcggcaggcc tgccatatag gccaccgcct ccgccacatg gcgcacgtcc atgcggggct
     1321 ccaccgcctt gctgccatcg ggttgcagca cgccctcggt catgcgctgg gtcatttcgg
     1381 tggcggcatt gccgatatca atctgtcccg ccgtgatgtc gaatgggcgc ccatccagga
     1441 tggtggattt ggtcaggccg gtaatggcgt gcttggtggc ggtgtagggc gcgctgtgcg
     1501 ggcgcggccg gtcagcgctg atcgagccgt tattgatgat gcgcccgccg cgggggtctt
     1561 gcgccttcat catgcggatc gcctcctggg tgcagagaaa ggcgccggtg agattgacgc
     1621 ccacgatagc ctgccattgc gcaaagctca gctcttcaat cgggatggcg ggggtgccca
     1681 tgccggcatt gttgaacagc atgtccaggc gggcgaattt ttccttgatc cgggcgaaga
     1741 cggccttcac ggccgccgga tcgccgacat cggcgggcgc tatcaaatga tcgccggcca
     1801 ggcctttggc cgtctcctca agcgtgtcct gtttgcggcc caccagcgcc agctgccagc
     1861 cttcgtgcgc gagtgcctgg gccacggccc gtcccacgcc gctgcccgcg ccggtgatca
     1921 ttgcaattct gttcattttt tcctcacgga caggggttgg acgggaacgc agcttaccgg
     1981 ctgacgctta taaggaaaaa ttcccgattc ggcgcaagag ggtcacattg cctttatccg
     2041 gcccggcatt tcc
//
LOCUS       DATMDK010000437         2916 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_427001,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000437 DATMDK010000000
VERSION     DATMDK010000437.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2916)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2916)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2916
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_427001"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..923
                     /gene="dgoD"
                     /locus_tag="VNN98_08450"
     CDS             <1..923
                     /gene="dgoD"
                     /locus_tag="VNN98_08450"
                     /EC_number="4.2.1.6"
                     /inference="COORDINATES: protein motif:HMM:NF010624.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008869 - galactonate dehydratase activity
                     [Evidence IEA];
                     GO_process: GO:0009063 - amino acid catabolic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="galactonate dehydratase"
                     /protein_id="HWM62170.1"
                     /translation="AIHMSALAGIDQALWDIKGKVLNQPVHALLGGPLRHKMRVYSWI
                     GGDRPQDIVAGAREVAAKGFTAIKMLGCEELAWLDSNAKLDAVIARVAALRDAMGPDF
                     GIAVDFHGRVHRPMAKQLAKELDPYRLMFIEEPVLSEHVEALKEIANHTATPIALGER
                     LFSRWDFKKILSDGLVDIIQPDPSHAGGITETKKIAAMAECYDVALALHCPLGPIALA
                     ACLQLDAVCYNAVIQEQSLGIHYNKSNDLLDYITDPSVFAYADGHVAIPTGPGLGITI
                     NEEAVKRGAAAGHRWRPPLWRHQDGSFAEW"
     gene            925..2226
                     /locus_tag="VNN98_08455"
     CDS             925..2226
                     /locus_tag="VNN98_08455"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HWM62171.1"
                     /translation="MTQAQMTTLADKPTRHRYLIMLMIFVCVAITFLDRSNISITAPA
                     MRKDLGFDTVHMGWILSAFGWTYAFCQIPSGWLVDRIRPRYFYPLILILWSVATACLG
                     LAGSFVALFALRVLIGALEAPSYMINNMVVTSWFPDRERAGAIGFYTSAQFLGLAFAQ
                     PLLLWLITAHGWRAVFFTTGIGGAAWGLVWLYCYRAPRASRANTAELELIETGGGIVD
                     LGTADAGKQARKLNWADLGTVFKYRKLWGVYIGQFAVTSCQWFFLTWFPTYLITFRHL
                     SMLKSPLYIALPFVAAFFGTQLSGFVSDRILRRGYSLGTARKTPIICGLLLSSSIVGA
                     NFVDRPEYVIAFMCLAFFANGMASIGWSLISSVAPRRLIGLTGGTFNFISNLSGIATP
                     LVIAYLAKGGNFAPGLTYIATVSVMGALAYILMIGKLERVE"
     gene            complement(2227..>2916)
                     /locus_tag="VNN98_08460"
     CDS             complement(2227..>2916)
                     /locus_tag="VNN98_08460"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM62172.1"
                     /translation="TLKAFFVRRGGEHGEAGYDTFKTKAANLSALEEARNARAFCADA
                     HALFTAALSNQGSLMSFVDARSTDIGNICVESRPVPLALARAEIKPAPALVKIADSRL
                     ADNRPADVAVGGVPAHSLPAIPYRHEESAAPPPPTASRAVDREEDRDAAQDEEDDARP
                     TYANADEQDAPRPRYYQIRSRPDRDYENRDDQDQGYYPPPRAAYGPPPGWRDYPAPRY
                     GWYPRDDYYGR"
BASE COUNT          481 a          914 c          924 g          597 t
ORIGIN      
        1 ccgccattca tatgagcgcg ctggcgggca tcgaccaggc gttgtgggac atcaagggca
       61 aggtgctgaa ccaaccggtg catgcgctgt tgggcgggcc gctgcgccac aaaatgcggg
      121 tctatagctg gatcggcggc gaccggccgc aggatatcgt ggcgggcgcg cgcgaggtcg
      181 cggccaaggg cttcaccgcc atcaagatgc tgggatgcga agaactggcc tggctggaca
      241 gcaacgccaa gctcgacgca gtgatcgcgc gggttgcggc gctgcgcgac gcaatgggac
      301 cggacttcgg cattgcggtg gattttcacg gccgggtgca tcgtcccatg gccaagcagt
      361 tggccaaaga gcttgatccc taccggttga tgttcatcga ggaaccggtg ctcagcgaac
      421 atgtcgaggc gttgaaagag atcgccaatc ataccgccac ccccatcgcc ttgggcgagc
      481 ggctgttctc gcgctgggac ttcaagaaaa ttctcagcga tgggttggtg gacatcatcc
      541 agcccgatcc ctcccatgcc ggcggcatta ccgagaccaa gaaaatcgcg gccatggcgg
      601 aatgctacga cgtggcgctg gcgctgcatt gcccgctggg accgatcgcg ctggccgcct
      661 gcctgcagct ggatgcggtc tgctacaatg ccgtgatcca ggaacagagc ctgggaatcc
      721 actacaacaa atcgaacgat ctgctggact acatcaccga tccgtcggta ttcgcctatg
      781 ccgatggcca tgtcgcaatc cctacaggtc cgggacttgg catcacgatc aatgaagagg
      841 cggtgaaacg cggcgcagca gccggccatc gctggcgccc gcctttgtgg cggcatcagg
      901 atggctcttt cgcggagtgg tgagatgaca caggcccaga tgacaacttt ggccgacaag
      961 cccacgcgcc atcgctatct gatcatgctg atgatctttg tctgcgtggc cataaccttt
     1021 ctggaccgca gcaacatctc catcaccgcg ccggccatgc gcaaggattt gggtttcgat
     1081 accgtgcata tgggctggat cctgtcggcc ttcggctgga cctatgcctt ttgccagatt
     1141 cccagcggtt ggctggtgga ccgtatccgc ccgcgttatt tctatcctct tatcctgatc
     1201 ctgtggtcgg tggcgaccgc gtgtctgggc cttgccggca gctttgtcgc cctcttcgcc
     1261 ctgcgcgtgc tgatcggcgc gctggaagcg ccgtcctaca tgatcaacaa tatggtggtg
     1321 acgtcctggt ttccggaccg ggaacgcgcc ggcgccatcg gcttctacac ctccgcccag
     1381 tttctcggcc tggcctttgc ccagccgctt ttgctgtggc tgatcaccgc gcatggctgg
     1441 cgcgcggtgt tcttcaccac cggcatcggc ggggcggcat ggggactggt ctggctctat
     1501 tgctaccgcg cgccgcgcgc gtcgcgggcc aatacggcgg agctggaact gatcgagacg
     1561 ggcggcggga tcgtcgatct gggtactgcc gacgcgggca aacaggcgcg caagctcaac
     1621 tgggccgatc tgggtaccgt gttcaaatac cgcaaattat ggggagtcta tatcggccag
     1681 ttcgcggtca catcgtgtca gtggtttttc ctgacctggt ttcccaccta tctgatcacc
     1741 ttccgccatc tcagcatgct caaatcgccc ctgtatattg cgctgccttt tgtcgccgcg
     1801 tttttcggca cccagctgtc gggctttgtc tccgaccgca tcctgcggcg tggctacagc
     1861 ctgggcaccg cacgcaaaac gccgatcatc tgcgggctgc tgctgtccag ttcgattgtc
     1921 ggcgccaatt ttgtggaccg gccggaatat gtcatcgcct tcatgtgcct ggccttcttc
     1981 gccaatggca tggcgagcat cggctggtcg ctgatctcca gcgtggcgcc gcgccggctg
     2041 atcggcctga ccggcggcac cttcaacttc atctccaacc tgtcgggtat cgccacgccg
     2101 ctggtcatcg cctatctggc caagggcggc aatttcgcgc ccggcctcac ctacatcgcc
     2161 acggtctcgg taatgggcgc gctggcctat atcctgatga tcggcaagct ggaacgggtc
     2221 gagtagctac cgcccgtaat aatcatcgcg cggataccag ccatagcggg gcgcgggata
     2281 gtcgcgccag ccgggcggcg gtccataagc ggcgcgcggc ggcggataat agccctgatc
     2341 ctgatcgtcg cggttctcat agtcccggtc ggggcggctg cggatctggt aatagcgcgg
     2401 gcgcggtgcg tcctgctcat ccgcattggc ataggtggga cgcgcatcgt cctcctcgtc
     2461 ctgcgccgca tcgcggtctt cttcgcggtc caccgccctg gatgcagtgg ggggcggcgg
     2521 cgccgccgac tcttcatgcc ggtaaggaat ggccggcagg ctgtgcgcgg gcaccccgcc
     2581 caccgcgacg tcggcgggcc tgttatcggc aagacgggaa tcggcgattt taacaagggc
     2641 tggtgccggc ttgatctccg cccttgccag ggccagcggc acgggccggg attcgacgca
     2701 gatattgccg atgtcggtgg agcgggcatc gacaaagctc atcaggctgc cttgattgct
     2761 cagcgccgcc gtgaacaggg catgggcatc ggcgcagaag gcccgcgcgt tgcgtgcctc
     2821 ctccagtgcc gacaggttgg cggccttggt cttgaaggtg tcgtaaccgg cttcgccatg
     2881 ttcgccgccg cgccgtacaa agaacgcctt caaggt
//
LOCUS       DATMDK010000438         3193 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2054448,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000438 DATMDK010000000
VERSION     DATMDK010000438.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3193)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3193)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3193
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2054448"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1208
                     /locus_tag="VNN98_08465"
     CDS             <1..1208
                     /locus_tag="VNN98_08465"
                     /inference="COORDINATES: protein motif:HMM:NF024491.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="phospholipase D-like domain-containing protein"
                     /protein_id="HWM62173.1"
                     /translation="RRKRAQDHAPAPAAPDAAPNIMLLSKVSERITQSPLTPGNALTI
                     LEGGDQAYPQMLAAIRGAKHGVAMSSYIFRDDAAGQEFADALIAAAARGVAVRVLLDS
                     VGSGYLYPEIYYRMQRGGVRAARFLHTWLPWRMPFLNMRNHRKLLAVDGALAFTGGIN
                     IGVENSARLSGASQIKDVHFRVQGPAVGVVMDAFARDWSFTTNESLDEDFWWPKLKAE
                     GKIFARGLRSGPDADIYKLEFLLGAALTLAQKRIRIVTPYFLPDPRLQFAIHQAGLRG
                     VTVEIVLPERSNQHLTDWAIRGHLRFFRHIRARIITTPPPFDHTKLCTVDGEWSLIGS
                     SNWDARSFRLNFEFDLETIDPGFTAQLDALIDARIAHGKVLTPDMLAAEPVWKRLRNA
                     AARLLMPYL"
     gene            complement(1188..2345)
                     /locus_tag="VNN98_08470"
     CDS             complement(1188..2345)
                     /locus_tag="VNN98_08470"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HWM62174.1"
                     /translation="MSRASHPDLVHFALAVGGFAIGTTEFATMSLLPYFARDLGISPP
                     TAGHVISAYALGVVLGAPLIAVLAARIARRTLLIGLMLVFALANGLTGLAPSYHWMLL
                     LRFVSGLPHGAYFGVAMLVAASLVPGEKRAQAAARVLMGLTVATIIGVPCATWLGQAI
                     GWRWGFVIVAALSLLTATLVALFAPHQPPQEGASPLRELGALKNRDVLLTLAIGAIGF
                     GGLFTVYTYLADTLLAVTRVKEGLVPLVFAVFGTGMMTGLVVVPRFAHGKLMRTAGWL
                     LLWFAATLALYTFAVGNIWTIMLSVFAIGLGGALGPILQTRLMDVAGEAQTLAAALNH
                     SAFNVANALGPLLGGIAIAQGYGLASTGLVGSGLALAGLAIWAIALKIRHQ"
     gene            2505..>3193
                     /locus_tag="VNN98_08475"
     CDS             2505..>3193
                     /locus_tag="VNN98_08475"
                     /inference="COORDINATES: protein motif:HMM:NF013126.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 3 N-terminal
                     domain-containing protein"
                     /protein_id="HWM62175.1"
                     /translation="MFRKMFLAASIAALATGAGAQTSSKQEADPDKLAAALVKQMTPD
                     ERNLLLHGFFSRPNAINKLPQIGAPFAAGYTPGIARLGIPQLAESDASLGVAWINGRR
                     ARDATALPSGMALAATWDMKIAYAGSAAIAQDARASGLNVLLAGGVDLTREPRNGRNF
                     EYLGEDPLLAGMLAGETIRAIQDQHVMSTVKHFALNAQETQKNNIGVDISEAAARESD
                     LLAFEIAIERG"
BASE COUNT          614 a         1087 c         1013 g          479 t
ORIGIN      
        1 gccggcggaa gcgcgcccag gaccatgccc ctgccccggc cgcgccggat gctgccccca
       61 acatcatgct cctgtccaag gtcagcgaga gaatcacgca gagccccctg accccgggca
      121 atgcattgac catcctggaa ggcggcgacc aggcctatcc gcaaatgctg gcggcgatcc
      181 ggggcgccaa gcatggggtc gccatgagct cctatatttt ccgcgacgac gcggcgggcc
      241 aggaatttgc cgacgcgctg atcgcggcgg ctgcgcgcgg cgtggcggtg cgggtgctgc
      301 tggacagtgt tggctccggt tatctctatc ccgaaatcta ttaccgcatg cagcgcggcg
      361 gcgtgcgagc ggcgcgcttt ctgcacactt ggctgccctg gcgcatgccg ttcctcaaca
      421 tgcgcaatca ccgcaaactg ctggcggtgg acggcgccct ggccttcacc ggcggcatca
      481 atatcggggt ggaaaactcc gcccgcctat cgggggcgag ccagatcaag gacgtgcatt
      541 tccgcgtcca gggcccggcg gtcggcgtcg tgatggacgc cttcgcccgc gactggagct
      601 tcaccaccaa tgaaagcttg gacgaggact tttggtggcc gaaactaaaa gccgagggca
      661 agatattcgc gcgcggcctg cgctccggcc ccgatgccga catctataag ctggaattcc
      721 tgctgggcgc ggcgctcacc ttggcgcaga aacgcatccg catcgtcacg ccctatttcc
      781 tgcccgatcc gcggctgcaa ttcgccatcc accaggcggg gctgcgcggc gtgacggtgg
      841 agatcgtgct gccggaacgc agcaaccagc acctgacgga ctgggcgata cgcggccacc
      901 tgcgtttctt ccgccatatc cgcgcccgta tcatcaccac cccgccgccc ttcgatcaca
      961 ccaagctctg caccgtggac ggggaatggt cgctgatcgg cagttccaac tgggatgcgc
     1021 gcagcttccg gctgaatttc gaattcgacc tggaaaccat cgatcctggg tttacggcgc
     1081 agctcgacgc cctgattgat gccaggatcg cgcacggcaa agtgctgacc cccgacatgc
     1141 tggcggccga gccggtgtgg aagcggctgc gcaacgcggc ggcgcgacta ttgatgccgt
     1201 atctttaacg caatcgccca gatcgccaat cctgccagcg ccaaaccgct gccgaccagc
     1261 ccggtggatg ccaggccgta gccttgcgca atggcgatgc cgcccaacag cggtcccagc
     1321 gcgttcgcga cattgaaggc ggagtgattc agcgccgcgg ctaaggtctg cgcctcgccc
     1381 gccacatcca tcagccgcgt ctgcaggatc ggccccagcg ccccgcccag gccgatggcg
     1441 aaaaccgaca gcatgatggt ccagatattg cccaccgcga acgtgtaaag cgccagggtg
     1501 gcggcgaacc acagcagcag ccatcccgct gtccgcatca gcttgccgtg cgcgaagcgc
     1561 ggcaccacca ccaggcccgt catcatccca gtgccgaaca cggcgaagac cagcggcacc
     1621 aggccttcct ttaccctcgt caccgccagc aaggtgtcgg ccagatacgt atagacggtg
     1681 aacaatccgc cgaagccgat ggcgccgatg gccaaggtca gcagcacgtc gcggttcttg
     1741 agcgcgccaa gttcgcgcag cggactggcg ccttcctgcg gcggctggtg cggcgcgaac
     1801 agcgccacca gggtggcggt cagcagcgac aaggccgcca cgatgacgaa gccccagcgc
     1861 cagccgattg cctgacccag ccaggtggcg caaggcacgc cgatgatggt ggccacggtc
     1921 aggcccatca gcacccgcgc cgccgcctgg gcccgctttt cgccgggcac cagcgaggcc
     1981 gctaccagca tggccacccc gaaataggcg ccatgcggca agccgctgac gaaacgcagc
     2041 agcagcatcc agtgatagga aggcgccagt cccgtcaggc cattggccag ggcgaagacc
     2101 agcatcaagc cgatcaacag agtccgccgg gcgatgcgcg ccgccagcac cgcgatcagc
     2161 ggcgccccca gcaccacgcc aagcgcatag gcgctgatca catgccccgc cgtcggcggg
     2221 ctgatcccca gatcgcgggc gaaatagggc aagagactca tggtggcgaa ttcggtggtg
     2281 ccgatggcga aaccgcccac cgccagggcg aaatgaacca gatcgggatg ggacgcgcgg
     2341 ctcaaagcat gccttgccga aaaagacggt ctaggacgcc acggtcaggg gaacaatgcg
     2401 gccaaaacgc gccgtccaac caagcatcaa aacctgtgca actcaagctt tcacgggccg
     2461 cgggacatgc tagtttcccg ccgctgcggc tgcggggaaa aaccatgttc cggaaaatgt
     2521 ttttggcggc gtcgattgcg gcgctggcaa cgggtgcggg cgcgcagacc tcttccaaac
     2581 aggaggccga tccggacaag ctggccgccg cgctggtgaa acagatgaca ccggatgagc
     2641 gcaatctgct gctgcacggc ttcttctccc gccccaacgc catcaacaag ctgccgcaga
     2701 tcggcgcgcc ctttgctgcc ggctatacgc cggggatcgc gcggctgggg attccgcaac
     2761 tggcggaatc cgacgccagc ctgggcgtgg cctggatcaa cggccggcgt gcccgggacg
     2821 ccaccgccct gccctccggc atggcgctgg cggcgacctg ggatatgaaa atcgcctatg
     2881 ccggcagcgc cgccatcgcc caggacgcac gcgccagcgg gctcaatgtg ctgttggcgg
     2941 gtggcgtgga cctgacgcgc gagccgcgca acggccgcaa ttttgaatat ctgggcgagg
     3001 atccgctgct ggcggggatg ctggccggag aaaccatccg cgccatccag gaccagcatg
     3061 tgatgtccac cgtcaagcat tttgccctga acgcgcagga gacccagaag aacaatatcg
     3121 gggtggacat ttccgaagcc gcggcgcgcg aaagcgattt gctggccttt gagatcgcca
     3181 tcgagcgcgg cga
//
LOCUS       DATMDK010000439         3113 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1824938,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000439 DATMDK010000000
VERSION     DATMDK010000439.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3113)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3113)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3113
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1824938"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..336
                     /locus_tag="VNN98_08480"
     CDS             <1..336
                     /locus_tag="VNN98_08480"
                     /inference="COORDINATES: protein motif:HMM:NF026954.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HpcH/HpaI aldolase/citrate lyase family protein"
                     /protein_id="HWM62176.1"
                     /translation="TVIAARAYGLSVIDGTYNEIGDDTGFAESCAQGRAFGFDGKTLI
                     HPGQIESCNRIFAPSAEDIAQARRIIEAFAQNPHAGAIALDGRMVERLHAQEAARLLA
                     LAAAIESRA"
     gene            336..1430
                     /gene="zapE"
                     /locus_tag="VNN98_08485"
     CDS             336..1430
                     /gene="zapE"
                     /locus_tag="VNN98_08485"
                     /inference="COORDINATES: protein motif:HMM:NF015902.5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein ZapE"
                     /protein_id="HWM62177.1"
                     /translation="MLLAQYRAAVARGELRADAAQENAVLRLNQLAQALVEKRGFSRF
                     GTKPEQPRGLYIWGDVGRGKTLLMDFFFEEAAVAKKRRAHFNRFMVDVHARIHTERQK
                     AGSSDPIPVIARDLAAEARLLCFDEFQVTDVADAMILGRLFDQLFADGVTIVATSNTP
                     PDRLYEGGLNRQLFLPFIAQIKQRLEVVELNGPTDYRLQRISGLKVYLTPLGPEADAA
                     MDAAWERLTDCKHGKPASLVVLGRKVPVPQAAQHVARFDFADLCAQPLAAADFLAVAQ
                     EFHTVLLDHIPLLTPEMRNEARRFILLIDTLYDEGVKLICSAAAPPEALYPAGDGAEA
                     FRRTASRLAEMQSEDYLKRGHGIHGLTASD"
     gene            1435..1833
                     /locus_tag="VNN98_08490"
     CDS             1435..1833
                     /locus_tag="VNN98_08490"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM62178.1"
                     /translation="MLWACAFILVCIGFYRYGLPWFQRFDAANVARIEQQVRDKSDAN
                     AHFRHALDVANEQVEEVQEIKTGAITHYLFEAQVFTTRDEAEEMRAQRVGVVARRFYE
                     ELPAALAGAAERGRMSARERASQRWKRTIH"
     gene            complement(1988..>3113)
                     /locus_tag="VNN98_08495"
     CDS             complement(1988..>3113)
                     /locus_tag="VNN98_08495"
                     /inference="COORDINATES: protein motif:HMM:TIGR01988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0071949 - FAD binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="FAD-dependent monooxygenase"
                     /protein_id="HWM62179.1"
                     /translation="AAAPAQVLDPKFDGRVSALAYASVRMLAALGVWDRLAPHTQPIR
                     EILVTDGKAGRPASPFSLHFDADEVEADSLGHIAENRHIRSSLQDCGARQSNLALVAP
                     QTVKSLTVEAGRAVARLADGEEISAALVIAADGRDSPLRSQMGVPVIGWSYPQTGIVA
                     TVEHEKPHNGVAYEHFLPSGPFAILPMTGNRSSLVWTEAKAKAPALLALDEAGFNDEL
                     ARRFGSHLGKTKSAGPRWSYPLSFHLARDFVRPRFALAGDCAHGIHPIAGQGLNLGLK
                     DAAALAEVLLDAARLGRDIGALDTLKRYERWRRFDSFALAASTDALNRLFSNDIAPLR
                     HLRDLGLGIVDSIGPARRFFMRHAGGDIGKLPRLMKGEAA"
BASE COUNT          581 a         1007 c          989 g          536 t
ORIGIN      
        1 accgtcatcg ccgcccgggc gtatggcctc agcgtgatag acggcaccta taatgagatc
       61 ggcgatgaca caggctttgc cgaaagctgc gcccagggcc gcgccttcgg ttttgacggc
      121 aagaccctga tccatcccgg ccagatcgaa agttgcaacc gcatcttcgc gccatcggcg
      181 gaagacatcg ctcaggcgcg gcggatcatc gaggccttcg cgcagaatcc gcatgccggc
      241 gccatcgccc tggacgggcg catggtcgag cgcctgcatg cgcaagaagc cgcgcgtctg
      301 ctggcactgg ccgccgccat cgaaagccgc gcctgatgct gttggcccag tatcgcgcgg
      361 cggtggccag gggcgaactt cgcgccgatg cggcacagga aaatgcagtg ctcaggctga
      421 accaattggc acaggcgttg gtggaaaagc gcggattctc acggttcggc accaagccgg
      481 agcaacccag gggcctttac atctggggcg atgtcgggcg cggtaagact ttgctgatgg
      541 actttttctt cgaggaagca gcggtggcca aaaagcgccg ggcccatttc aatcgcttca
      601 tggtggatgt gcatgcccgt attcataccg agcggcagaa ggcgggcagc agcgatccca
      661 tcccagtgat cgcccgcgat cttgccgcgg aggcgcgttt gctgtgtttc gacgaattcc
      721 aggtcaccga tgtcgctgac gccatgattt tggggcggct gttcgaccag ctgtttgcgg
      781 acggcgtcac catcgtcgcc accagcaaca ccccgcctga ccggctttat gagggcggct
      841 tgaaccgcca gcttttcctg cccttcatcg cccagatcaa gcagcggctg gaggtggtgg
      901 agctgaatgg acccaccgat taccggctgc agcgcatttc cggattgaaa gtctatctga
      961 cgccattggg gcctgaagcc gacgcggcga tggatgcggc ctgggagcga ttgaccgatt
     1021 gcaaacacgg caagccggca agcctggtgg tgctgggccg caaggtgccg gtgccgcagg
     1081 cagcccagca tgtggcgcgc ttcgactttg ccgatctgtg cgcccagccg ctggcggcgg
     1141 cggattttct ggccgtggca caggaattcc acaccgtgct gctggaccat attccgctgc
     1201 tgacgcccga gatgcgcaac gaggcgcgac gcttcattct gctgatcgac actttatatg
     1261 acgagggagt gaagctgatc tgctccgcgg ccgccccacc cgaggcgcta tatccggcag
     1321 gcgacggcgc tgaagccttc cgccgcaccg cctcgcgcct tgccgagatg caaagcgagg
     1381 attatctgaa acgcggacac ggcattcacg gactgaccgc cagtgattga gaatatgctc
     1441 tgggcctgcg ccttcatcct ggtctgtatc ggtttttacc gctacggcct gccctggttt
     1501 cagcggttcg atgccgccaa tgtcgcgcgc atcgagcagc aggtgcgcga caagtccgac
     1561 gccaacgccc atttccgcca cgccctggac gtggccaatg agcaggtgga agaagtgcag
     1621 gaaataaaga ccggcgccat cacgcattat ctgttcgagg cgcaggtttt caccacccgc
     1681 gacgaggccg aggagatgcg cgcccaacgg gtgggcgtcg tggcgcggcg attctacgaa
     1741 gaattgcccg ccgccctggc cggcgcggcg gagcgcgggc ggatgtcggc gcgcgagcgg
     1801 gcatcgcaaa ggtggaaacg gacgattcat tagtagtccc cccggcgtca tggcccgccg
     1861 gagtgcgggc cacccagttg gggacaagat gtgtgtcaac gaaaagaata tcgaccgact
     1921 atcgaaatcg agttcggtat cacctggatg gcccgcattt gcgggccatg acattggagc
     1981 tatggaacta ggccgcctcg cccttcatca ggcgcgggag cttcccaatg tcaccgcccg
     2041 catggcgcat gaaaaagcgc cgcgcgggac caatggaatc tacgatcccc agtcccagat
     2101 cgcgcaggtg ccgcagcggc gcgatgtcgt tggaaaacag ccggttgagc gcgtcggtgg
     2161 acgccgccag cgcaaacgag tcgaaccgcc gccagcgctc gtagcgcttc aacgtatcca
     2221 gcgccccgat atcccgcccc aggcgcgcgg catccagcaa cacttccgcc agcgcggcgg
     2281 catctttcag ccccaggttc aggccctgac ccgcaatggg atgaatgccg tgggcgcagt
     2341 cccctgccag ggcaaagcgc ggccgcacaa agtcccgcgc cagatgaaac gacaaaggat
     2401 aggaccagcg cggtccggcg gactttgtct ttcccagatg cgaaccgaag cggcgggcca
     2461 actcgtcatt gaaaccggct tcgtccagcg ccagcagcgc gggcgccttg gctttggctt
     2521 ccgtccatac cagcgacgac ctgtttcccg tcatcggcag gatcgcaaac ggacccgagg
     2581 gcaggaaatg ttcataggcc acaccgttgt gcggcttttc gtgctccacc gtggcgacga
     2641 tgccggtttg cggataggac cagccgatca ccggcacccc catctgagaa cgcagcggcg
     2701 agtcgcggcc gtcggcagcg atcaccaggg cagcggaaat ctcttcgcca tccgccaacc
     2761 gcgccaccgc gcggcccgct tctaccgtca gcgatttcac ggtctgcggt gcgaccagcg
     2821 ccagattgga ctgccgcgcg ccgcagtcct gcaggctgct gcggatatgc cggttctccg
     2881 cgatatggcc caggctgtcg gcttccactt catcggcgtc gaaatgcagc gagaagggcg
     2941 aggcgggcct gcctgccttg ccgtcggtga ccaatatctc gcggatgggc tgggtatggg
     3001 gcgccagcct gtcccacacc cccaacgccg ccagcatccg cacactggca taggccaggg
     3061 ccgagacccg gccatcgaat ttcgggtcca gcacctgcgc cggcgctgcc gcg
//
LOCUS       DATMDK010000440         3920 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1117286,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000440 DATMDK010000000
VERSION     DATMDK010000440.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3920)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3920)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3920
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1117286"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..315)
                     /locus_tag="VNN98_08500"
     CDS             complement(<1..315)
                     /locus_tag="VNN98_08500"
                     /EC_number="2.3.3.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008036492.1"
                     /note="catalyzes the formation of 2-isopropylmalate from
                     acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-isopropylmalate synthase"
                     /protein_id="HWM62180.1"
                     /translation="MTTRNTDTTPIQIFDTTLRDGEQSPGAAMTHEEKLQIAELLDEM
                     GVDVIEAGFPISSPGDFKAVQEISKLVKRASVCGLSRAGFKDIDRAGEALKGAFRPRI
                     HTF"
     gene            707..1474
                     /locus_tag="VNN98_08505"
     CDS             707..1474
                     /locus_tag="VNN98_08505"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HWM62181.1"
                     /translation="MIKIVDVTKLYPGTAAPSVRGLSLEIDGGDFLVLIGPSGCGKTT
                     TLGMINRLVEPSAGRVEIEGLPPAASDPVILRRHIGYVFQEAGLFPHMTVAENIAITP
                     RLLGWPKAETQARVSELLALVRLAQAGFALRLPRELSGGQRQRVALARALAARPAIML
                     LDEPFGALDPLTRDEIAEDYRRIHETLGLTTVMVTHDMTEALLLADRIGVMREGRLVQ
                     IGTPRQLLEAPADGFVAAMIDTPKRRARRLAEALHLS"
     gene            1471..3018
                     /locus_tag="VNN98_08510"
     CDS             1471..3018
                     /locus_tag="VNN98_08510"
                     /inference="COORDINATES: protein motif:HMM:NF015995.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease/substrate-binding
                     protein"
                     /protein_id="HWM62182.1"
                     /translation="MNANLREALAVLPEYLSQHVLLSVAALALGVTISLPLAVAAVRW
                     RPLRGAVLTFAGLVQTIPALALLALFYPLLLALSLLSQRLFGVGFRALGFLPALLALT
                     LYSMLPVLRNTVTALVGIDPAIRMAAKGVGMTPSQSLRLVELPLAAPVIMAGIRTAAV
                     WVIGAATLSTPIGQTSLGNYIFTGLQTENWVFVLFGCVAAGAAALVADRLLALAEDGI
                     ARRSSLRVGLAALGLAVVVLASLLPGLGRPQGSLVIGAKNFDEQYILSALIGQRLKAI
                     GTPSTIKADLGSAIAFHALAAGDVDLYVDYSGTVWGNQMHRGDLPGRAPMLAQMKDWM
                     WRTHGIILLGTLGFENAYTFAMRRDLAEALHISSLADLAAVSARLKMGGDFEIFTRPE
                     WRAVIRAYGLSFAVQRQYQPNFLYRAVAGGDVDVISAFSSDGRIAQYDLKILADPKGA
                     LPPYDAMLLLGPTHAHDLALIAALKPLVGAIPLNVMQQANLMVDRDRDKRTPAQAAQW
                     LAAHLMH"
     gene            3150..>3920
                     /locus_tag="VNN98_08515"
     CDS             3150..>3920
                     /locus_tag="VNN98_08515"
                     /inference="COORDINATES: protein motif:HMM:NF012738.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HWM62183.1"
                     /translation="MKILPPVSIEARRLLPSRWDLLAAVLVLGFLVAFADVSRFLVHP
                     LSSISGDYLKLNPIDLPGYALRTSLRMLIALGVSLTFTFTYATWAAKNPRAGTLLVPL
                     LDILQSIPILSFLSVTIVWFLALSPGHILGAELACVFTIFTGQAWNMAFSFYQSLRTV
                     PEELTEAGRMFGLSAWARFWRIEAPFATPSLIWNMMMSMSGGWFFVTISEAISVGKTN
                     IALPGIGSWIAVAIAQKNLPAIFEAIGAMLVVILIYDQL"
BASE COUNT          625 a         1298 c         1213 g          784 t
ORIGIN      
        1 aaacgtgtga atccggggcc ggaacgcacc tttcagcgct tcgccggcac ggtcgatatc
       61 cttgaagccg gcgcgggaca ggccgcaaac cgatgcgcgc ttgacgagct tgctgatctc
      121 ctgcaccgcc ttgaaatcgc cgggcgagga aatgggaaag cccgcctcga tcacatctac
      181 gcccatctcg tccagcaatt cggcgatctg cagcttttct tcatgcgtca tcgcggcgcc
      241 cggcgactgt tcgccgtcgc gcagggtggt atcgaagatt tgaatcgggg tcgtgtcggt
      301 attcctggtg gtcatgacaa tagtccttct gctcgtcgca aaatgcgact tcgatttctt
      361 ctttgcagtt gtcccctaac cggcgatgcg cgggaccatc ccgcgcgacc cgcgactagg
      421 ggctgctaag aagaagaagc gcgtgcgaag aaccgagggg acggggctga atgtcagcgc
      481 gcacgaaatc gcaagcggca atcccgcccc ttgcgatttc aaactgcacg ccttccgtca
      541 ttgaccgttc cgcccgtcga attttacagt gtgttttacc agacaaaggc ctaactagcg
      601 gtaaaaccac tattttttcc cttgtttcag cggttttacg ctgatttcgc gcaccagcgc
      661 aatagcgcgt aaactggccc gtagcgggcg caagcgggat gcgggcttga taaaaatcgt
      721 cgatgttaca aagctttatc ccggcactgc ggcaccgtcg gtgcgcggcc tgtcgcttga
      781 gattgatggc ggcgattttc tggtgctgat cggcccttcg ggctgcggca agactaccac
      841 cctgggcatg atcaaccgcc tggtggaacc cagcgccggc cgggtcgaga ttgagggtct
      901 gcccccggcc gcctccgatc ccgtcatcct gcgccggcat attggctatg tctttcaaga
      961 agctggtctt tttccccata tgaccgtggc ggagaacatc gccatcaccc cccgcctgct
     1021 gggctggccg aaggccgaga cccaggcgcg ggtcagcgaa ttgttggcac tggtgcgcct
     1081 tgcgcaagcg ggtttcgcgc tgcggttgcc acgggagctg tccggcggcc agcgccagcg
     1141 cgtcgccctg gcgcgggcgt tggcggcgcg ccctgccatc atgctgctgg acgagccgtt
     1201 cggcgccctc gatcccctca cccgcgacga gatcgccgaa gactatcgcc gcatccacga
     1261 aacgctgggc ctgaccacgg tgatggtgac ccacgacatg accgaagcct tgctgctggc
     1321 ggaccgcatc ggggtgatgc gcgaaggccg cctggtgcag atcggcacgc cgcggcaatt
     1381 gctggaggcg ccggccgacg gctttgtagc cgcgatgatc gacactccca agcgccgcgc
     1441 ccgccgcctg gccgaagcgc tgcacctgtc atgaacgcca acctgcgcga agcccttgcc
     1501 gtcctgcccg aatatctcag ccagcatgtg ctgctcagcg tcgcagcgct ggcgctgggg
     1561 gtgacgatca gcctgccgct ggcggtggcg gcggtgcgct ggcgccctct gcgcggcgcg
     1621 gtcctgacct ttgccggcct ggtccagacg attccagcgc tggcgttgct ggccctgttc
     1681 tatcccttgc tgctggcgct ttcgctactg agccagcgtt tgttcggcgt cggattccgc
     1741 gccctggggt ttttgccggc gctgctggcg ctgacgctct attcgatgct gccggtgctg
     1801 cgcaacaccg tcaccgccct ggtcgggatc gacccggcca tccgcatggc ggccaagggc
     1861 gtgggcatga cgccgtctca atcgctgcgg ttggtggagc tgccgctggc ggcgcccgtg
     1921 atcatggcgg gcatccgcac cgccgcggtg tgggtgattg gggccgccac cctgtccacc
     1981 cccatcggcc agaccagcct gggcaattac atcttcaccg gcctgcagac cgagaattgg
     2041 gtgttcgtac tgttcggctg cgtcgcggcg ggcgccgccg ccttggtggc ggaccggctg
     2101 ctggcgctgg cggaagacgg catcgcgcgg cgttcgtctt tgcgggtggg actggccgcg
     2161 ctgggcctgg ctgtggtggt gctggccagc ctgctgccgg gactgggacg gccgcaaggc
     2221 agcctggtga tcggcgccaa gaatttcgac gagcaataca tcctcagcgc cctgatcggc
     2281 cagcgcctga aggccatcgg cacaccctcc accatcaaag ccgatctcgg ctccgccatc
     2341 gcctttcacg ccctggcggc gggcgatgtg gacctttatg tcgattattc cggcaccgtc
     2401 tggggcaacc agatgcatcg cggcgacctg cccgggcgcg ccccgatgct ggcgcagatg
     2461 aaagactgga tgtggcgcac tcacggcatc atcctgctgg ggaccctggg cttcgagaac
     2521 gcctatacct tcgccatgcg ccgcgacctc gccgaggcgc tgcacatcag cagcctggcc
     2581 gacctggccg cggtatccgc gcgcctgaaa atgggcggcg attttgaaat cttcacccgc
     2641 cccgaatggc gcgccgtgat ccgcgcctat ggcctgtcct tcgcggtcca gcggcaatat
     2701 cagcccaatt tcctctaccg cgccgtggcg ggcggcgatg tggacgtgat ctcggccttt
     2761 tccagcgatg gccgtattgc gcaatatgac ctgaaaatcc tggccgatcc caaaggcgcc
     2821 ctgccgccct atgacgccat gctgctgctg ggcccgaccc atgcccatga cctggcgttg
     2881 attgcggccc tgaagccgct ggtcggagcg attcccctga acgtcatgca gcaggccaac
     2941 ctgatggtgg accgcgaccg ggacaagcga accccggccc aggccgcgca gtggctggcg
     3001 gcgcatctga tgcattgaca tcggttgcgg acgcgacaat agaaccctca agaatcccca
     3061 agaatctttg gggggtgctg tcacaaagct ttcgcgcaat ttggcaaagt ggtggccgcc
     3121 gtatcgcaaa cccgcaaggc ctgccggaca tgaagatcct gccgcccgtc tcgatcgaag
     3181 cacgccgcct gctgcccagc cgctgggacc tgctggcggc ggttctggtg ctgggctttc
     3241 tggtggcttt tgccgatgtc agccgcttcc tggtgcatcc gctgagttcc atttccggcg
     3301 attatctcaa gctcaacccc atcgacctgc ccggttacgc cttgcgaacc agcctgcgca
     3361 tgctgatcgc cctgggcgtt tcgctgacct tcaccttcac ctatgccacc tgggcggcca
     3421 agaatccccg cgccggcaca ctgctggtgc ccttgctgga cattctgcaa tcgataccca
     3481 tcctgtcctt cctgtcggtc accatcgtct ggtttctggc gctttcgccg ggccatatac
     3541 tgggtgcgga actggcctgc gtcttcacca tcttcaccgg ccaggcctgg aacatggcct
     3601 tcagcttcta tcagagcctg cgcaccgtgc cggaggaact gaccgaagcg ggacgcatgt
     3661 tcggcctgtc ggcctgggcg cgcttctggc gcatcgaggc gcccttcgcc acgccgtcat
     3721 tgatctggaa catgatgatg agcatgtccg gcggctggtt tttcgtgacc atttccgaag
     3781 ccatcagcgt gggcaagacc aacatcgcat tgcccggcat cggctcgtgg atcgcagtcg
     3841 ccatcgccca gaagaatctc cccgccattt tcgaggcgat cggcgccatg ctggtggtga
     3901 tcctgatcta tgaccagctg
//
LOCUS       DATMDK010000441         3090 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2961439,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000441 DATMDK010000000
VERSION     DATMDK010000441.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3090)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3090)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3090
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2961439"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            189..596
                     /gene="cdd"
                     /locus_tag="VNN98_08520"
     CDS             189..596
                     /gene="cdd"
                     /locus_tag="VNN98_08520"
                     /EC_number="3.5.4.5"
                     /inference="COORDINATES: protein motif:HMM:NF004064.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004126 - cytidine deaminase activity
                     [Evidence IEA];
                     GO_process: GO:0008655 - pyrimidine-containing compound
                     salvage [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytidine deaminase"
                     /protein_id="HWM62184.1"
                     /translation="MTIKEMTDLARTMMDRAHAPYSRFHVGSVLRGANGKLYGGCNVE
                     NAAYPQGMCAEATAIGNMVADGETHIAEILVMANGQELVTPCGGCRQRLREFAGDSTP
                     IHICDREGLRRTVTLGELLPLSFGPDHLNISRA"
     gene            598..1929
                     /gene="deoA"
                     /locus_tag="VNN98_08525"
     CDS             598..1929
                     /gene="deoA"
                     /locus_tag="VNN98_08525"
                     /EC_number="2.4.2.4"
                     /inference="COORDINATES: protein motif:HMM:NF004490.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009032 - thymidine phosphorylase activity
                     [Evidence IEA];
                     GO_process: GO:0006139 - nucleobase-containing compound
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thymidine phosphorylase"
                     /protein_id="HWM62185.1"
                     /translation="MLPQEIIRKKRDGAALTDEELGFVVRGICGGGFSEGQVAGFAMA
                     VFFRGMNARERVTFTRAMTASGTVLRWDDLKLGGPVLDKHSTGGVGDKVSIMLAPLVA
                     ACGGFVPMISGRGLGHTGGTLDKLGAIPGYRADPDINTFRRVVQQVGCAIIGQTAELA
                     PADKRLYAVRDVTATVESIPLISASILSKKLAAGLEGLVMDVKTGSGAFMEDPAKARM
                     LAKTLVSIGQGADLPVTALLTDMDEVLGESVGHALEMDEVVFYLTGRARDPRLHEVTL
                     ALAAEMLCLGKLTASLQEGKAKAQASLDSGKAAEVFSHMVAALGGPSDYLEKYAQYTL
                     PAKIVKPFAAPRSGILVGMDCRAVGVAAIGLGGGRRTTSDVIDLTVGFTHFLRVGTKV
                     EAGDLIALVHARNATEADAAIAELQEAVRIGDEAPMVQPVISARITAQTPE"
     gene            complement(2126..>3090)
                     /gene="alc"
                     /locus_tag="VNN98_08530"
     CDS             complement(2126..>3090)
                     /gene="alc"
                     /locus_tag="VNN98_08530"
                     /EC_number="3.5.3.4"
                     /inference="COORDINATES: protein motif:HMM:TIGR02961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004037 - allantoicase activity [Evidence
                     IEA];
                     GO_process: GO:0000256 - allantoin catabolic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="allantoicase"
                     /protein_id="HWM62186.1"
                     /translation="FSKIWVDLAQPRLGSEVVFATDDFFADKARLIDPAPPTFIPGKY
                     DAHGKWMDGWESRRKRVPGHDWCVLKLGRPGLLKGLTIDTSFFTGNYPPACSLEWANS
                     AAQVPGDGDWKPLLANTALKGDSQLSLPVTLNNVVTHLRLHIYPDGGVARLRVWGQVM
                     ADFAPGQRVDMAAMENGGLPMACNDQHFGQVANMLAPGKARDMGDGWETRRRREPGHD
                     WSIIALARPGRIEEILVDTNHFKGNYPDRCFIQGTGETCLAQDALIGQSADWPIILPE
                     QKLSADSEHRFTKEIAAHDPVKFVRLNIIPDGGVARLRLWGKPV"
BASE COUNT          545 a          939 c         1009 g          597 t
ORIGIN      
        1 tgcttgacgc ggtggcgatc cggctgcaag gcgtgagcgt gccggtgatc ggcgcggtgc
       61 cggtgcaatt gattcaggcg ctgccctatc tgctgacggt ggtgttgctg gcagggttga
      121 tcgggcgggc ggtggcgccc aaggcgattg gtgtgccata tgaaaaagaa cattgaagag
      181 gccacaaagt gacgatcaag gagatgaccg atctggcgcg gacgatgatg gaccgcgccc
      241 atgcgcccta ttcgcgcttc catgtcggct cggtgctgcg cggcgccaat ggcaagctct
      301 atggcggctg caatgtcgag aatgccgcct acccgcaagg catgtgcgcc gaagccaccg
      361 ccatcggcaa tatggtggcg gacggcgaga cccacattgc cgaaatcctg gtgatggcca
      421 atggccagga gttggtgacg ccctgcggcg gctgccgcca gcgtctgcgc gaatttgccg
      481 gcgacagcac gccgatccat atctgcgacc gggaaggtct gcgccgcacc gtcactttgg
      541 gcgagttgct gccgctatca ttcggaccgg accatctgaa catctccagg gcctgacatg
      601 ctgccgcagg agatcatccg caaaaagcgc gatggcgccg ccctaacgga tgaagaactc
      661 ggttttgttg tgcgcggcat ttgcggcggc ggcttcagcg agggtcaggt cgcgggtttt
      721 gccatggcgg tgttctttcg tggcatgaat gcgcgcgaac gggttacctt cacccgcgcc
      781 atgaccgcgt cgggcacggt gctgcgctgg gacgatctca agctgggcgg cccggtgctg
      841 gacaaacatt ccaccggcgg agtgggcgac aaagtcagca tcatgctggc gcccctggtg
      901 gcggcttgcg gcggtttcgt gccgatgatc tccggccgcg gcctgggcca taccggcggc
      961 acgctcgaca agctgggcgc cattcccggc tatcgcgctg atccggatat caataccttc
     1021 cgccgcgtgg ttcagcaggt gggatgcgcc atcatcggcc agaccgccga gctggcgccc
     1081 gccgacaagc ggctttatgc agtgcgcgac gtcaccgcca cggtggaatc cattccgctg
     1141 atttcggcct cgatcctgtc caagaaattg gcggcgggtc ttgaaggttt ggtgatggat
     1201 gtgaagacgg gttcgggcgc cttcatggaa gatcccgcca aggcgcgcat gctggccaaa
     1261 accttggtgt cgatcggcca gggcgcggat ctgcccgtta ccgcgcttct gaccgacatg
     1321 gacgaggtgc tgggagaatc ggtcggccat gccttggaga tggacgaggt ggtgttttat
     1381 ttgacgggca gggcgcgcga tccgcgactg cacgaggtca cgctggcgtt ggccgcggag
     1441 atgctgtgtc tggggaaact gacggcgtca ttacaagagg gtaaagcgaa agcacaggca
     1501 tcgctcgaca gcggcaaggc ggctgaggtc ttctcccata tggtggctgc gctcgggggg
     1561 ccgtccgatt atctcgagaa gtatgcgcaa tacacgctgc cggccaaaat cgtcaaacct
     1621 ttcgcggccc ctcgctccgg catcctcgtc gggatggact gccgcgctgt cggcgtggcc
     1681 gctatcgggt tgggcggcgg tcggcgcacg acatccgatg tgatcgacct gactgtgggc
     1741 ttcacgcatt ttctgcgggt cggcaccaag gtggaagccg gcgatctcat cgcactggtt
     1801 catgcccgta atgcaaccga agccgatgct gccatcgcgg aactgcaaga agcggtgcgg
     1861 atcggggacg aggcgccgat ggtgcagccg gtgatatcgg cgcgcattac cgcgcaaacg
     1921 cctgaataga gtcgttttgt tttggctttg tgccgttatt gtcacggccc gggactccgg
     1981 gccgcccagg tgacgccaat cgcagatgtc gaaagttaga tctcagccaa atgcttcgac
     2041 acagggctgt cccacctggg tggcccgcat tcgcgggcca tgacatcctt attacgattc
     2101 ccttgaaccc aaaccggtcc taacgctaaa ccggcttgcc ccaaagacgc agccgagcca
     2161 cgccgccatc gggaatgatg ttgagccgga cgaacttgac cggatcgtgg gcggcgatct
     2221 ctttggtaaa gcgatgctcg ctgtcggcgg agagcttctg ttccggcagg atgatgggcc
     2281 agtccgccga ttgtccgatc agggcgtcct gcgccaggca ggtctcgccg gtcccctgga
     2341 taaagcagcg gtccggataa ttacctttaa agtgattggt atcgaccagg atctcttcga
     2401 tccggccggg ccgcgccagg gcgatgatcg accagtcgtg gcccggctcc cgccgccgcc
     2461 gcgtttccca gccatcgccc atgtcgcgcg ccttgccggg cgccagcata ttggcgacct
     2521 ggccaaaatg ctggtcgttg caggccatgg gcaggccgcc attttccatc gccgccatat
     2581 cgacgcgctg gcccggcgcg aagtccgcca tcacctggcc ccagacgcgc agccgcgcca
     2641 ccccgccatc gggatagatg tgcaaccgca aatgggtgac gacattgttc agcgttaccg
     2701 gcaaactcaa ctggctgtcg cctttcagcg ccgtgttcgc cagcagcggc ttccagtcgc
     2761 catcgccggg aacttgtgcg gcgctgttgg cccattccag cgaacaggcg ggcgggtaat
     2821 tgccggtgaa gaagctggtg tcgatggtca gccccttcaa caggcctggt ctgccgagct
     2881 tcagcacgca ccagtcatgg cccggcacgc gcttgcgccg gctttcccat ccgtccatcc
     2941 atttgccatg cgcgtcatat ttgccgggaa tgaatgtcgg cggcgccggg tctatcagcc
     3001 gcgccttgtc ggcgaaaaaa tcatccgtgg cgaagacgac ttccgagccc agccgcggtt
     3061 gggccagatc cacccagatt ttcgagaagt
//
LOCUS       DATMDK010000442         2100 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_3183164,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000442 DATMDK010000000
VERSION     DATMDK010000442.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2100)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2100)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2100
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3183164"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1326)
                     /locus_tag="VNN98_08535"
     CDS             complement(<1..1326)
                     /locus_tag="VNN98_08535"
                     /inference="COORDINATES: protein motif:HMM:NF025152.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4175 family protein"
                     /protein_id="HWM62187.1"
                     /translation="MPILSPRTASQTGWPTNALDRRVALARAILAIERVLPRLWPAFG
                     FIGFYFALALTGIFTFIAWPLQALLLAAAITASALSLYDGFEDFTWPRSLDAARRLER
                     DSGLAHRPISERDDVLVGEDPFAKTLWALHRARALPGKFRLGLPRTDIAARDPQGLRW
                     YLLIALAVGIVLARGDTGARLISAFDSGAGAAASLDAWIDPPPYTGLPLTSLRIGDDG
                     VIRVPQGSVLNLRVHGAPRTPGLAAGSNAAPRFTGEDGEYSSNVILSTDARVRVQVGG
                     HAIGKWNIQAVVDTPPVIALTAKPSRTEQLATKFAFKSSDDYGIASVRAVLMPLKTSG
                     GGHGKPLVVELPLPESSAKQIGQTSYVDLTSNPYAGLMVEGRLEARDAIGQKGVSAPF
                     TFQLPARVFTDPLARALIEQRQHLATSDTAGRHVVLLTLDALSIDPERFY"
     gene            complement(1277..>2100)
                     /gene="lysA"
                     /locus_tag="VNN98_08540"
     CDS             complement(1277..>2100)
                     /gene="lysA"
                     /locus_tag="VNN98_08540"
                     /EC_number="4.1.1.20"
                     /inference="COORDINATES: protein motif:HMM:TIGR01048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008836 - diaminopimelate decarboxylase
                     activity [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="diaminopimelate decarboxylase"
                     /protein_id="HWM62188.1"
                     /translation="NPDVDAKTHAKITTGTAESKFGIPFSRAREAYAQAANLAHIEIV
                     GIDVHIGSQITDLEPFETAFTLAAELVTTLRADGHTITRLDLGGGLGVPYENSNMPPP
                     DPSAYGAMVARVTKDLGCTLSFEPGRLIAANAGVLVSRVIYVKRGEAKTFAIIDAGMN
                     DLIRPAMYDAHHEIAAVVEPAVGSPRPRYDVVGPVCETSDLFAADRPLPELKSGDLVA
                     ILSAGAYGAVMASDYNARPAAPEVLVSGEQWGIVRPRESYADLIAKDRIPDWLAD"
BASE COUNT          380 a          669 c          713 g          338 t
ORIGIN      
        1 atagaaacgc tcgggatcga tgctgagcgc gtccagggtc agcagcacca catgccgccc
       61 cgcggtatcc gatgtcgcca gatgctggcg ctgttcgatc aaggcgcggg ccaagggatc
      121 ggtgaagacg cgggcgggaa gctggaaggt gaacggcgcg ctcacgccct tctggccgat
      181 ggcgtcgcgc gcttccagac ggccttcgac catcagtccg gcatagggat tggaagtgag
      241 atcgacatag ctggtctggc caatttgctt ggcggaggat tcgggcagcg gcaattccac
      301 caccagtggt ttcccgtggc cgcccccaga ggttttcagc ggcatcagca cggcgcggac
      361 actggcgatg ccgtaatcgt cgctgctctt gaaggcgaat ttggtggcca gctgctcggt
      421 gcgcgaaggc ttggcggtca gcgcgatcac cggcggcgtg tccaccaccg cctggatgtt
      481 ccatttgccg atggcatggc cgcccacctg cacccgcacc cgcgcatcgg tggacagaat
      541 gacattgctg gaatattcgc cgtcttcgcc agtgaagcgc ggcgcggcat tgctgccggc
      601 agccaggccc ggggtgcgcg gcgcgccgtg aacccgcaag ttcagcaccg agccttgcgg
      661 cacgcggatc acgccgtcat cgccgatccg caaggaggtc agcggcaggc cggtataggg
      721 cgggggatcg atccaagcat ccagcgacgc ggcggcgccc gcgccgctgt caaaggcgct
      781 gatcagccgc gcgccggtat cgccgcgcgc cagcacgatc cccaccgcca gcgcgatcag
      841 cagataccag cgcaggccct gcggatcgcg ggccgcgata tcggtgcgcg gcaggcccag
      901 acggaatttg ccgggcaggg cgcgggcccg gtgcagcgcc cataaggtct tggcgaaagg
      961 atcctcgccc accagcacat cgtcgcgctc ggagatggga cggtgcgcca acccgctgtc
     1021 gcgttccagc cgccgtgccg catccaggct gcgcggccag gtgaaatctt cgaagccatc
     1081 gtaaagcgac aaagccgagg cggtgatggc ggcggccagc agcaacgcct gtaacggcca
     1141 ggcgatgaaa gtgaagatgc cggtcagcgc cagagcaaag taaaagccga tgaaaccaaa
     1201 agccggccac agccgcggca gcacgcgctc gatcgccaat atcgcgcgcg ccagcgcgac
     1261 tctgcgatcc agcgcgttag tcggccagcc agtctgggat gcggtccttg gcgataagat
     1321 cggcataact ctctcggggg cgtacgatgc cccattgctc gcccgacacc aagacttccg
     1381 gggcggcggg ccgcgcattg taatcgctgg ccatcaccgc gccataggcg cccgccgaca
     1441 ggattgccac aagatcgccg cttttcagtt ccggcagcgg ccggtctgcg gcaaagagat
     1501 cggaggtttc gcacaccggc cccaccacat cgtagcgggg gcgcggggaa cccaccgcgg
     1561 gttccacaac cgcggcgatc tcgtgatggg cgtcatacat ggcgggacgg atcagatcgt
     1621 tcatgcccgc gtcgatgatc gcgaaggtct tggcctcgcc gcgtttgaca tagatcacgc
     1681 ggctcaccag cacgccggca ttggcggcga tcagccggcc cggctcgaag gacagggtgc
     1741 agccaaggtc cttggtcacc cgcgccacca tcgcgccata ggcgcttgga tcgggcggcg
     1801 gcatgttgct gttttcgtac ggtacgccca ggccgccacc caggtctagg cgggtaatgg
     1861 tatggccatc ggcgcgcagg gtggtcacca gttcggcggc cagagtgaag gcggtttcaa
     1921 agggttccag atcggtaatc tggctgccga tatgcacgtc gatgcccacg atctcgatat
     1981 gggcaaggtt ggcggcctgg gcgtaggcct cacgggcgcg gctgaacgga atgccgaact
     2041 tggattccgc cgtgccggtg gtgattttgg catgggtctt ggcgtccacg tcaggattga
//
LOCUS       DATMDK010000443         2836 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_682583,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000443 DATMDK010000000
VERSION     DATMDK010000443.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2836)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2836)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2836
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_682583"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..696)
                     /locus_tag="VNN98_08545"
     CDS             complement(<1..696)
                     /locus_tag="VNN98_08545"
                     /inference="COORDINATES: protein motif:HMM:NF012738.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HWM62189.1"
                     /translation="MTALSHWAQTGLRAQRNRAPVRFPRVKLRRAAPLLGLAVPSALL
                     GAWYIATAAHWVPEQILPAPATVLEAFAALVRNGDLQNNLAVSLSRVAYGFGAGTIAG
                     LLFGAGMGFSDPFARLVRPTFLIIAQIPILAWLPFFMLLLGIGEALKVVLVAKAVFTP
                     ITLATSTGIRGVPQSYLELARILQLSRWRTLTRVVLPAALPQLFSGFRYGLTHAWLAL
                     VAVELLASYEGIGY"
     gene            complement(693..1715)
                     /locus_tag="VNN98_08550"
     CDS             complement(693..1715)
                     /locus_tag="VNN98_08550"
                     /inference="COORDINATES: protein motif:HMM:NF020650.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HWM62190.1"
                     /translation="MTLTPALARAEAPPPVIRIGVAAEGLGGRQYAYRLSLDVVRAQG
                     LLEKEFAASGTKIQWQYFRAAGPAVSEALASHQVDFVFHGDLPSVVVRSTGIKTRYLL
                     PLYARSNIYVAVPVKSQIQKLTDLKGKVTSSFRGTATQLVAARVLSSVGLSERDLRFI
                     NLDTAAANAALATGQVDAAFVMFNSFGLKDQNLIRYVFSSNWQPRFSAVGGLLVTDEF
                     AARYPQSVDRFVNAVVRGAWFAGQPQNREAVFAIWAKSGIPQNYFEREYKGQDLRVVL
                     SPLTDDFVVGKYKSATADALRFGLIRKPVDLTGWFDRGPVDRALAALQLEHFWVQADV
                     DGKPKA"
     gene            complement(1753..2502)
                     /locus_tag="VNN98_08555"
     CDS             complement(1753..2502)
                     /locus_tag="VNN98_08555"
                     /EC_number="7.6.2.14"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HWM62191.1"
                     /translation="MESVAVRSLGKSYPVAGGAVDALRHLDLSISRGECVTLLGPSGC
                     GKSTLLRVIAGLVKDYDGEVIVEGKAITGTGAERGMVFQDHRLFPWLTALDNVRIALD
                     NSPLGVRERTEQAVEHLALVGLQGFEHAYPGQLSGGMAQRVAIARALVSRPRLLLLDE
                     PFGALDAITRAHMQGELARILERENITTIFVTHDVDEAIYLGDRVVVMARRPGRIRTQ
                     FPVEIERPRRRTDPAFNLLKEQILGFLEQDH"
BASE COUNT          597 a          923 c          847 g          469 t
ORIGIN      
        1 atagccgatg ccctcataag aggcgagcag ttccaccgcc accaaagcca accatgcatg
       61 ggtgaggcca taacggaatc ccgagaacaa ttgcggcaaa gcggcgggca acacgacacg
      121 ggtcagggtc cgccatctgg agagttggag aatccgcgcc agttccagat aggactgcgg
      181 cacgccgcga atgccggtag aggtcgccaa ggtgatgggg gtgaacaccg ccttggccac
      241 caacaccact ttcaacgctt cgccgatgcc cagcagcagc atgaagaagg gcaaccaggc
      301 caggattgga atctgggcga tgatcagaaa ggtgggacgt accagccgcg cgaacggatc
      361 ggaaaaaccc atgcccgcgc cgaacagcag tcccgctatt gtacccgcgc caaagccgta
      421 agcgacgcgg ctgagggaca ccgcaagatt gttctgcaaa tcgccgttgc ggaccagggc
      481 agcaaaggct tccagcaccg tggccggcgc cggcagaatc tgttccggca cccaatgcgc
      541 cgccgtcgcg atataccagg cgcccagaag cgccgacggc accgccaggc ccagcagtgg
      601 cgcggcacgg cgcaacttta cccgggggaa ccgcactggc gcacgattgc gctgcgcccg
      661 caacccggtc tgcgcccaat ggctgagagc ggtcatgctt tgggtttccc gtccacgtca
      721 gcctgaaccc agaaatgttc cagctgcagc gccgccaggg cgcgatccac cggtccgcga
      781 tcgaaccagc ccgtgaggtc caccggcttg cggatcaggc cgaagcgcag cgcatcggcg
      841 gtggcggatt tatattttcc gaccacgaaa tcatcggtca gcgggctcag caccacccgc
      901 agatcctgcc ctttatattc gcgctcgaaa taattttgcg gaatgccgga cttggcccag
      961 atggcaaaca ccgcctcgcg gttctggggc tggccggcga accaggcccc tcgcaccacc
     1021 gcattgacga aacggtccac gctttgggga tatcgggcgg cgaattcgtc ggtcaccaga
     1081 agcccgccca cggcactgaa gcgcggctgc caattggagg aaaagacata acggatcagg
     1141 ttttgatcct tcagtccgaa actgttgaac atcacaaagg ccgcatccac ctggccggtg
     1201 gccaacgcgg cattggcggc ggcggtgtcg agattgatga agcgcagatc gcgttcgctg
     1261 agcccgacgc tggacagcac ccgtgccgcg accagctggg tggcggtgcc gcggaagctg
     1321 gacgtcacct tgcccttgag atcggtcagt ttctgaatct gggatttgac cggcaccgcg
     1381 acatagatat tgctgcgggc ataaagcggc agcagatagc gcgtcttgat cccggtcgac
     1441 cgcaccacca ccgatggcag gtcgccgtga aagacgaaat ccacctgatg gctggccagc
     1501 gcctcgctca ccgccgggcc ggcggcgcgg aaatattgcc actgaatctt ggtgccggaa
     1561 gcggcgaact ccttttccaa cagaccctgg gcccgcacca catccagcga cagacggtaa
     1621 gcatattggc gcccgcccag cccttcggca gccacaccga tgcggatgac gggtggtggc
     1681 gcttcggccc gcgccagcgc tggcgtcaac gtcaaagcaa gacccagtag aagcggtttc
     1741 cagcggcgca tctcaatgat cctgttccag gaagcccagg atctgctctt tcagcagatt
     1801 gaaggcggga tcggtgcggc gccgcggccg ttcgatctcc actggaaact gggtgcggat
     1861 gcgccctggc cgccgcgcca tcaccaccac ccggtcgccc agatagatcg cctcgtccac
     1921 gtcatgggtg acgaagatcg tggtgatatt ctcgcgctcc agtatccgtg ccaattcccc
     1981 ttgcatgtgc gcgcgggtga tggcgtccaa tgccccgaac ggctcatcca gcagcagcag
     2041 gcgaggacgg ctcaccagcg cgcgggcaat cgccacccgc tgcgccatgc cgccggacaa
     2101 ttggccggga taggcgtgct caaaaccctg cagccccacc agcgccagat gctccaccgc
     2161 ctgttcggtg cgctcgcgta cgcccagcgg gctgttgtcc agtgcgatgc ggacattgtc
     2221 caacgcggtc agccagggaa acaggcgatg atcctgaaac accataccgc gttccgcgcc
     2281 ggtgccggtg atggctttgc cctcgacgat cacctcgccg tcataatcct tcaccagccc
     2341 cgcgatcacc cgcagcaatg tcgatttgcc gcaaccgctg gggcccagca aggtgacgca
     2401 ctcgccgcgg ctgatcgaaa gatcgagatg gcgcagcgca tccaccgcgc cacccgccac
     2461 cggataggat tttcccagag acctgaccgc caccgattcc atcgtcaact cctatccgtg
     2521 cgtcctgcgc aacaggccca tgcaggcaat gcgggtttaa tgtctattga ctcgatagag
     2581 tatctatagt tggaataacc acgccaagca acagctggca tgccggttcc gcgaggaacc
     2641 ttggaaattt ttggaggacc caaatgagtg cagtcgcgtc caaggcccag tcgaaaattg
     2701 tggtccggcc atccacgccc gtgatcggcg ccgaaatcga aaatgtcgat ctcagcaaac
     2761 cgctgtcgtc tgcggaagtt gacgacattc accaggcgct gctgcagtgg aaggtgctgt
     2821 tcttccgcga ccagga
//
LOCUS       DATMDK010000444         2208 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2962255,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000444 DATMDK010000000
VERSION     DATMDK010000444.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2208)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2208)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2208
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2962255"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1636)
                     /locus_tag="VNN98_08560"
     CDS             complement(<1..1636)
                     /locus_tag="VNN98_08560"
                     /inference="COORDINATES: protein motif:HMM:TIGR00757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004540 - RNA nuclease activity [Evidence
                     IEA];
                     GO_process: GO:0006401 - RNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Rne/Rng family ribonuclease"
                     /protein_id="HWM62192.1"
                     /translation="MTKRMLIDANHPEETRVVILDGSKVEEFDFEAASRRPLKGNIYL
                     AKVTRVEPSLQAAFVEYGGNRQGFLAFAEIHPDYYQIPVADRQALLAEQEAEARRRSE
                     DDIESFEITGPKSDAAAEEEDEEDEADSGEETVMAPLVPLDAAPEAESDEAEAHSETP
                     DGEQEEVFVNHGGAPVRREGEPAHDEEDEDEVSENKPDAAAEALSDYHGDTDVAAAEA
                     VEENEGEIQPVSPDEAAATNEEMANEENEGAIEPVTAEGGEAQALQAGRPPQKWVRKK
                     HYKIQEVIKRRQIILVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTPRGGGISRKIT
                     NAADRKRLKSAAQGLELPEGMGLIIRTAGENRTRLEIRRDYDYLLRLWDTIREKTLSS
                     NAPACVHEEGDLIKRVIRDLYNTDVQDVVVEGEQGFRNAKDFMRMLMPSHAKFVHQYK
                     DTVPLFQRMHIEAQLDSMFSPTVTLKSGGYIVINQTEALVSIDVNSGRATREHSIEET
                     ARKTNLEAASEVGRQLRLRDLAGLIVIDFIDMEESRN"
BASE COUNT          345 a          660 c          707 g          496 t
ORIGIN      
        1 cgttgcggct ttcttccatg tcgatgaagt cgatgacgat cagccccgcc aggtcgcgca
       61 ggcgcagctg gcggccgact tcggaggcgg cttccagatt ggtcttgcgc gcggtttcct
      121 cgatggaatg ttcgcgggtg gcgcgccctg aattcacgtc gatcgagacc agcgcctcgg
      181 tctggttgat gacgatatag ccgcccgact tcaaggtgac ggtgggcgag aacatcgagt
      241 ccagctgggc ttcgatatgc atgcgctgaa acagcggcac ggtgtccttg tactggtgga
      301 cgaatttggc atggctgggc atcagcatgc gcatgaagtc cttggcgttg cggaagccct
      361 gttcgccttc caccaccacg tcctgcacat cggtattgta gaggtcgcgg atgacgcgct
      421 tgatcaggtc gccttcctca tggacgcagg ccggcgcgtt ggaggacagg gtcttttcgc
      481 ggatcgtgtc ccacaggcgc agcagatagt catagtcgcg ccgtatctcc agccgggtgc
      541 ggttttcgcc cgcggtgcgg atgatcaggc ccatgccttc gggcagttcc agcccctggg
      601 cggcgctttt caggcgcttg cgatctgcgg cgttggtgat cttgcgcgaa atgccgccgc
      661 cgcgcggcgt gttgggcatc agcacgcaat agcggccggc cagcgacaga taggtggtga
      721 gggcggcgcc cttgttgccg cgttcttcct tgaccacctg caccaggatg atctggcggc
      781 gcttgatgac ttcttgaatc ttgtaatgct tcttgcgcac ccacttctgg ggcgggcggc
      841 cggcttgcag cgcctgggcc tcgccgcctt cggcggttac cggctcgatg gcgccttcat
      901 tctcttcatt ggccatctct tcattggtcg cggcggcctc atccggggaa acgggctgga
      961 tttcgccttc attttcttcc accgcttcgg cggcggcaac gtccgtatcg ccgtgatagt
     1021 cgctcagcgc ttcggcggcg gcatccggct tgttttcgga aacctcgtct tcgtcttcct
     1081 cgtcatgcgc aggctcgccc tcgcggcgaa ccggcgcccc gccgtgattg acgaacactt
     1141 cttcctgttc gccgtctggg gtttcggaat gggcttcggc ctcgtcgctt tcggcttccg
     1201 gggcggcgtc cagcggcacc agcggcgcca ttacggtctc ttcgccgctg tcggcctcgt
     1261 cttcttcgtc ttcctcctcg gcggcggcat cggatttggg gccggtgatt tcgaaagact
     1321 cgatatcgtc ttccgaacgg cggcgggctt cggcttcctg ctcggccagc aaggcctgcc
     1381 ggtcggccac ggggatctgg taataatcgg gatggatttc ggcgaaggcc aggaagccct
     1441 ggcgattgcc gccatattcg acaaaggcag cctgcagcga cggttcaacc cgcgtcacct
     1501 tggcaagata gatgttgccc ttgagcggcc gccgcgaggc agcctcgaaa tcaaattcct
     1561 cgaccttgga accgtcgaga atgaccacgc gggtctcttc cgggtggttg gcgtcgataa
     1621 gcatgcgctt ggtcatgaaa gtctccggcg cgcgcgcgat tgcgtccggc ggcactgtgt
     1681 gcggcggaca agttggggcg gcgcgaattg ttggtggaaa ggacgcgcgc aaacccgtcc
     1741 gtcgaaacgg cctgttgact cataaagtcg ggggccggga cagcgtcgga agggagcgca
     1801 aatttgacag tcattgctac ttcagggccc accggtccga tgaaggactt ggggccaaag
     1861 ggattacctg atgggccgtt gggctcgcgt tcgtcgcggg gcatgccggg ccttgtcagg
     1921 ggcggcgcgg cagccgcgag aatcgctagg cgctgccgga cgcacttttt gtagggtgcc
     1981 tgctgggttt caacaagcga ttaatgggca gatttgtgac gggggctcac gatttataca
     2041 tttgtcaata taatcagtat cttacctagg tcttggtcca tagcctcaac aaattataac
     2101 gcaccgcctc cagccggacc cggttccccc agttcatctt cagcccttcc agcgccgcca
     2161 cctcgttcag ttcatagagc tgggtgcgca ggaattcctc ggggatca
//
LOCUS       DATMDK010000445         2611 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1118846,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000445 DATMDK010000000
VERSION     DATMDK010000445.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2611)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2611)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2611
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1118846"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..564
                     /locus_tag="VNN98_08565"
     CDS             <1..564
                     /locus_tag="VNN98_08565"
                     /inference="COORDINATES: protein motif:HMM:NF016777.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HWM62193.1"
                     /translation="FLGVRPMLQDLADPDWILQPGLAPALNAIAAGGLVFDALILAHQ
                     LPAITELAARHPQLAIVLDHAAKPRLGDADAMAAWARRIEALAALPNVTCKVSGLLTE
                     LQPGGSKDDIARAIGVLFDHFGAGRLIWGSDWPVLTLAGQYQDWFDLAREAVAIKDSS
                     AVRSVMGGNAVRIYRPDKSKLGRHIRA"
     gene            625..>2611
                     /locus_tag="VNN98_08570"
     CDS             625..>2611
                     /locus_tag="VNN98_08570"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM62194.1"
                     /translation="MKRRWTLAILLGLAVVLLLLLWIARVQFAAEVARAYFRQHGIES
                     SVEIGALGLSSASARFALGPPEAPDISADRIELHFDPLSWIPRVVEVRLVNPVVRARL
                     GADGKLTLGSLQDWIDSLNRQQGKSRFVSDDLAVSLTGLRLLLATPGGALEVAGDAKL
                     VKNLPVSLALRAQPTRMAYRGTDVNLRAANLAFDNRAGTLAVQFSGAVKNTALDAQAL
                     DARFDAQGFKWSTDKGLTLAMSDARLQVAAASVTAGQVVTTPKLDVIAHNVTATSEGR
                     FDADIAANGSAGFDAVLAPLRAADPALAGAIRQNLSRLAMTFAGHIERHAGIIRFALT
                     KPLLVTGAKGGVLRVPALSLSGASDSMTAALNASLSGPGLPAASLTMRKLMWSGGGFT
                     SDVTFATRFNFAMLRGADIAANGNVSWQGGRYAFTPNGCARTVLAGFHPGASDLAKDV
                     RAAICAIGSRPLVTGEGASWKLSGQMRDGAADLPLGTVHAEKLAARLDFEGQGAPLKG
                     LANITAGQVSDRAASQRFKPLLGSGTAALAGGVWRGRFAMTDMKGNALGEASYLHTMA
                     TGAGTAHIDAPHIVFAPNHQQPADLSPLLVGLRSAEGNAAFAGDINWTRQAITSQGKL
                     SIATLDFMTVLGKAHAVKSEIAFTSLLPPATASGQGLT"
BASE COUNT          434 a          840 c          856 g          481 t
ORIGIN      
        1 ttcctggggg tgcggcccat gctgcaggat ttggccgatc cggactggat tctgcagcct
       61 gggctggcgc cggccttgaa cgcaatcgcc gctggagggt tggtgttcga cgctttgatc
      121 ctcgcccatc aactgccggc aatcaccgag ctggcggcgc gccatccgca attggccatc
      181 gtattggatc atgcggccaa gccgcgtctg ggcgacgccg atgcgatggc ggcctgggcg
      241 cgcagaatcg aagcgcttgc cgcgctcccc aacgtcacct gcaaggtcag cgggttgttg
      301 accgaactgc aaccaggcgg cagcaaagac gatatcgccc gcgccatcgg ggtgctgttc
      361 gatcattttg gcgccggccg cctgatatgg ggcagcgact ggccggtact gactttggcc
      421 ggacagtatc aggactggtt cgacttggcg cgcgaagccg tcgccatcaa ggattccagt
      481 gccgtccgct ccgtgatggg cggcaatgcc gtgcgcattt atcggccaga taagtcaaaa
      541 ttggggcgcc atatccgcgc ctgatttggt cgcaaactgc acaaacccgc gctagattgc
      601 ttgcggggtg gtggagtgtt gcgattgaaa cggcgttgga cgctagcgat tttgcttggg
      661 ctggcagtgg tgctgctgct gctgctttgg atcgcgcgcg tccagttcgc ggctgaggtc
      721 gctcgcgcct atttccgcca gcatgggata gaatcctcgg tggagatcgg ggcgctgggc
      781 ctgtcaagcg cctcggcccg ctttgccctg gggccgccgg aggccccgga catttccgcc
      841 gaccgcatcg aactgcattt cgatcccctc agctggattc cgcgcgtggt ggaagtgcga
      901 ttggtgaatc cagtggtgcg ggcgcggctg ggtgcggacg gcaagctgac cctagggtcg
      961 ctgcaggatt ggatcgactc tctgaaccgc cagcaaggca agtcgcgctt tgtcagcgat
     1021 gatctggccg tgtcgctcac gggcctgcgt ctgctgctgg cgacgccggg cggcgcgctg
     1081 gaggtagctg gcgatgccaa gctggtaaaa aacctgccgg tatcgctggc gctgcgggca
     1141 cagcccaccc gcatggccta tcggggcacg gatgtgaact tgcgcgccgc caatctggcg
     1201 ttcgacaacc gcgccggaac gcttgcggtc caattttccg gtgcggtgaa aaacaccgcg
     1261 ctcgatgctc aagctttgga tgcccgcttc gatgcccaag ggttcaaatg gtccacggat
     1321 aaagggctga cgctcgccat gtccgatgcc cgcctgcagg tcgcagcggc gtcagtcaca
     1381 gccggacagg tcgtcaccac acccaaactg gatgtcatcg cccacaatgt cacggccaca
     1441 tcggaaggca ggtttgacgc ggatatcgct gccaacggta gcgccggttt cgatgccgtg
     1501 ctggcgccgc tgcgcgccgc cgatccggcg ttggcaggcg ccatccggca aaacctttca
     1561 cgcctggcca tgacatttgc cggtcatatc gagcggcacg ccggcatcat ccgtttcgct
     1621 ttgaccaagc ctctgctggt gacgggcgcc aagggcggcg tcttgcgcgt tccggcgctg
     1681 agcttgtccg gtgcgtccga cagcatgacg gcggcgttga acgcgtcgtt aagcgggccg
     1741 ggcctgcccg ccgccagcct gacgatgcgc aagctgatgt ggagcggcgg cggtttcacc
     1801 agtgacgtca ccttcgctac ccgtttcaat ttcgccatgt tgcgcggcgc cgatatcgcc
     1861 gccaacggca atgtgtcctg gcaaggcggc cgctacgcct tcacccccaa cggttgtgcc
     1921 cgcaccgttc tggcgggttt tcatcccggc gccagcgact tggcgaaaga cgtgcgtgcc
     1981 gcaatctgcg ccataggcag ccggccgctg gttacgggcg aaggagcgag ctggaaactg
     2041 tccggccaga tgcgggacgg cgccgccgac ctgccgctgg gcactgtaca tgccgagaaa
     2101 ctcgccgccc gcctggattt tgaaggccag ggcgcaccgc tcaagggtct ggccaacatc
     2161 accgcgggac aagtctcgga tcgcgccgcc agccaacgct tcaagccact gctgggcagc
     2221 ggcaccgcgg cgctggcggg cggcgtctgg cgcggccgct ttgccatgac ggacatgaag
     2281 ggcaatgcgc tgggcgaggc aagctatctg cacaccatgg ccaccggcgc cgggaccgcg
     2341 catatcgatg cgccgcatat cgtattcgcg ccgaaccatc agcagcccgc cgatttgtcg
     2401 ccgctgctgg tggggctgcg cagcgccgaa ggcaacgccg ccttcgccgg tgacatcaac
     2461 tggacgcggc aggccatcac cagccaaggc aaactatcca tcgccacgct ggatttcatg
     2521 acggtactgg gcaaggccca tgcggtgaaa agcgagatcg ccttcacctc tctgttgccg
     2581 cccgccaccg cgtccggcca aggcctcacc a
//
LOCUS       DATMDK010000446         3491 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2717534,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000446 DATMDK010000000
VERSION     DATMDK010000446.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3491)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3491)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3491
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2717534"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..302
                     /locus_tag="VNN98_08575"
     CDS             <1..302
                     /locus_tag="VNN98_08575"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM62195.1"
                     /translation="FSAKLDPSLNFDLLIGDKTKDARKVWDGKESRALYKQTVEAGDR
                     SARQAAFDRLNAAFLADAPAIVLFNSRRIGGVRANVYGYKPWPAAQQRLWNVGIQ"
     gene            299..1243
                     /locus_tag="VNN98_08580"
     CDS             299..1243
                     /locus_tag="VNN98_08580"
                     /inference="COORDINATES: protein motif:HMM:NF012738.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HWM62196.1"
                     /translation="MIAYIFRRLLLTIPTLLLVSVIVFGLIRLIPGDPAEVMMGPDAD
                     PASIASLHHQMGLDEPLPVQFIAWAGRTLHGDLGVSIATGEPVVRLIVTRFQLTAAIV
                     LVSVLLATLIAVSLGMIAAWRRNSSLDLAVVGGATIVLAVPSFWLGLVLLLVFGLKLG
                     WLPVVGYVPFSDGVGAALLFLILPIITLTITESGVLTRMMRASAIDVLNQEYVTHARA
                     KGLPERAVLARHVFPNAFAPTLTLVGLSLGHLLGGIAVIETVFTLPGLGRLMVDSVLA
                     RDYPVVQGCLLFTAVIYVAVNLAVDMLYPIFDPRVTAQ"
     gene            1240..2061
                     /locus_tag="VNN98_08585"
     CDS             1240..2061
                     /locus_tag="VNN98_08585"
                     /inference="COORDINATES: protein motif:HMM:NF012738.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HWM62197.1"
                     /translation="MTRFRHLHWNALLGLALVGWLLATILLGAFWTPYDPIAIDLAHP
                     FTPPSAAHWLGSDQFGRDVLSRAMLGARISFSIALGTVALVIALGTMLGLCAGFLRGW
                     TDRVLMTVCDAVLAFPGILLALALIAVLGSNKSSIVIALSIAYLPSVTRVVRSAALSI
                     RERDYIEASRVAGDTQLYTIMRHVLPNALPAVMVLATSLFGWAVLSESALSFLGVGVP
                     PPAPTWGNMLSDARPYMEEANWLSLVPGFCIMLTLLGVNLLGDALRDYLDPRGRQ"
     gene            2058..>3491
                     /locus_tag="VNN98_08590"
     CDS             2058..>3491
                     /locus_tag="VNN98_08590"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HWM62198.1"
                     /translation="MTRTPLLDIANLCVETASRDGAPGRVLLQDFSLDILPGEFVSVV
                     GESGSGKTMAARAILDLLPPGTRRAGGSIRLSGRELTTLSARQMRQVRGGEVGMVFQE
                     PMVSLNPALTIGRQLEEGLALHRDYNRAERRDRIIEMLRRVRISEPAKRLAAYPHEFS
                     GGMRQRIMLASVMLLKPKLLVADEPTTALDMLSQRDVMEAMTDLARDEGVAVLLITHD
                     LRLVARYTQRMVVVEKGRLVEKGETAQVLRAPSDPYTRKLIDSLPQFQAGKADRGAER
                     APLLCVENASLCYEGRAGWLFGGAPKPVVHEVSLTVGVGETVALVGASGSGKTTLGRA
                     VLGLKALSGGAIKFDGLDIARMNAADMRKFRRAAQLVFQDPFSSLDPRLKIGEVVGAP
                     LRHESISAFARRLRVETVLSEVGLPGFADQFAHQISGGQRQRVAIARAIVSWPRLVVA
                     DEPVSALDATIQRQVLSLLQKLQDQYGF"
BASE COUNT          503 a         1094 c         1175 g          719 t
ORIGIN      
        1 ccttttccgc caagctggat ccgtcgctca acttcgatct tctgatcggc gacaagacca
       61 aggatgcgcg caaggtgtgg gacggcaagg aatcgcgggc gctctacaag caaacggtgg
      121 aggctggcga tcggagcgcg cgtcaggccg ccttcgaccg cctgaacgct gcctttctgg
      181 cggacgcgcc ggccatcgtg ctgttcaatt cgcggcgcat cggcggggtg cgcgccaatg
      241 tatacggcta caaaccctgg cccgcggcac agcagcgtct gtggaatgtg gggattcaat
      301 gatcgcctat attttccgcc gccttctgct gaccatcccg accttgctgc tggtgagtgt
      361 cattgttttc ggactcatcc gcctgatccc gggcgatccg gcggaagtga tgatggggcc
      421 ggacgcggac cccgcgtcca ttgcgagttt gcatcaccag atgggcctgg acgaaccgct
      481 gcccgtgcag ttcatcgcct gggccggccg cacattgcat ggcgatctgg gcgtctccat
      541 cgccacgggc gaaccggtgg tgcggctgat cgtgacgcgg tttcagctga ccgccgccat
      601 tgtgctggtt tcggtattgc tggcgacctt gatcgccgtt tcgctgggga tgatcgcagc
      661 ctggcggcgt aacagcagcc tcgatcttgc ggtggtgggc ggggcgacga ttgttctggc
      721 ggtgccgagc ttctggcttg gcctggtcct gctgctggtt tttggtctca agctgggctg
      781 gctgccggtg gtgggttatg tgccgttttc cgacggcgtc ggcgccgcac tgctgtttct
      841 cattctgccc atcattacgc tcaccatcac ggagagcggc gtgctcacgc gcatgatgcg
      901 cgccagcgcc atcgacgttc tgaaccagga atatgtcacc catgcccgcg ccaaggggct
      961 gccggaacgc gccgtgctgg cgcggcatgt cttccccaac gccttcgcgc cgaccctgac
     1021 tttggtggga ctttcgctgg gccatctgct gggcggcatc gcggtgatcg aaacggtgtt
     1081 caccttgccg ggtctggggc ggctgatggt cgattccgtt ctggcgcgcg attatccggt
     1141 ggtgcaggga tgtctgctat tcaccgcggt catctatgtc gccgtgaatc tggcggttga
     1201 catgctgtac cccattttcg atccccgggt gacggcgcaa tgacccggtt tcgccacctg
     1261 cattggaacg ccctgctggg tcttgcgctg gtggggtggc tgctggcgac catcctgctg
     1321 ggcgcattct ggacgcccta cgatcctatc gcgatcgacc tggcgcatcc cttcacgccg
     1381 ccgtccgccg cgcattggct gggatcggac cagttcggcc gcgatgtgtt gagccgtgcc
     1441 atgctgggcg cgcgcatttc cttttcgatc gcgctgggca ccgtcgcgct ggtcatcgca
     1501 ctgggcacga tgctgggact ttgcgccggt ttcctgcgcg gctggaccga tcgcgtcctc
     1561 atgacggtct gcgacgccgt cctggccttt cccggcattc tcctggcgct ggcgctgatc
     1621 gcagtgctgg ggtcgaacaa atccagcatc gtcatcgcct tgtcgatcgc ctatctgcct
     1681 tcggtgacgc gggtggtgcg cagcgccgct ttgtccattc gcgaacgcga ttatatcgag
     1741 gcctcgcgcg tggccggcga cacgcagctc tacaccatca tgcgtcatgt gctgcccaat
     1801 gccttgcccg ccgtgatggt gctggcgaca agcctgttcg gctgggccgt gctgtcggaa
     1861 agcgcgctca gttttctggg ggtcggcgtg ccgccgcctg cgcccacctg gggcaacatg
     1921 ttgtccgatg cacggcccta catggaagag gcgaactggc tgagcctggt gccgggcttt
     1981 tgcatcatgt tgaccctgct gggcgtgaac ctgctgggcg atgccctgcg cgactatctg
     2041 gatccgcggg ggcggcaatg acgcgcacgc cgcttctgga catcgccaat ctttgcgtcg
     2101 aaaccgcgtc ccgtgacggc gcacccggcc gtgtcctgct gcaggacttc tccctggata
     2161 tcctgccggg ggaattcgtc tcggtggtgg gcgaatccgg cagcggaaaa accatggcgg
     2221 cgcgcgccat tctggatctg ctgccgccgg gtacgcgccg cgccggcggc agtatccggc
     2281 tttccgggcg cgaactcacc acgctgtccg cccgccagat gcgccaagtg cgcggcggcg
     2341 aagtcggtat ggtgttccag gaacccatgg tctcgctcaa tccggcgctc accatcgggc
     2401 gccagctcga ggaaggcctg gcgcttcatc gcgactataa ccgggccgaa cgccgcgacc
     2461 gcatcatcga aatgctgcgg cgggtgcgga tcagcgagcc ggcaaagcgg ctcgccgcct
     2521 acccccatga gttttccggc ggcatgcgcc agcgcatcat gctggcctcg gtgatgctgc
     2581 tgaagccgaa acttctggtc gccgatgaac ccaccacagc gctggatatg ctgagccagc
     2641 gcgatgtgat ggaggcgatg accgatctgg cccgggacga gggcgtggcg gtgctgctga
     2701 tcacccatga tctgaggctg gtggcccggt acacccagcg catggtggtg gtggaaaagg
     2761 gcaggctggt ggagaagggc gaaaccgccc aggttctgcg ggcgccgtcc gatccctata
     2821 cccgcaagct gatcgactcg ctgccgcagt tccaggctgg caaggcggac cggggcgccg
     2881 agcgggcgcc gctgctttgc gtggaaaacg catcgctctg ctatgagggc cgcgccggct
     2941 ggctgttcgg cggcgccccc aagccggtcg tgcatgaggt cagcctgacg gtgggcgtgg
     3001 gcgagacggt tgcgctggtc ggggccagcg gctcgggcaa gaccacgctg ggccgggcgg
     3061 tgctgggact caaggcgttg tcgggcggtg cgatcaaatt cgacggcctt gatattgcgc
     3121 gaatgaacgc ggccgacatg aggaaattcc gccgcgcggc gcagctggtg ttccaggatc
     3181 ctttctcctc gctcgatccg cggctgaaaa tcggcgaggt cgtcggcgct ccgctgcgcc
     3241 atgagtcgat ttccgctttt gcgcgcaggc tccgggtgga gactgtgttg tccgaagtgg
     3301 gcctgccggg ttttgcagat cagttcgcgc accagatttc cggcggacag cgccagcgcg
     3361 tggcgattgc gcgcgccatt gtctcctggc cgcggctcgt ggtggccgat gagcccgtgt
     3421 cggcactgga tgcgacaatc cagcgccaag tgctctcact gcttcaaaag ctgcaggatc
     3481 aatacggttt t
//
LOCUS       DATMDK010000447         2361 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2963056,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000447 DATMDK010000000
VERSION     DATMDK010000447.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2361)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2361)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2361
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2963056"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1074
                     /locus_tag="VNN98_08595"
     CDS             <1..1074
                     /locus_tag="VNN98_08595"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing sensor histidine kinase"
                     /protein_id="HWM62199.1"
                     /translation="RALFAGELAFRDSGRVIAVLFDAANLVPARAALVPAGQAPLAAV
                     VPGWPVAVTTQMDETGALQSWTGPLYLFVILGPALAGGWLAALFVGAFERQARASRAI
                     RALKSTRPIEAKLMVRLANAERGAMEALRAKSEFIAHMSHELRTPLNAVIGFSEIIAE
                     EFFGPTGHPKYSEYARDISNAGRQLHAKIGDILEFANIEAGRYPLTEEAVELAALAQA
                     CVEDQQGRAFSRRISLSLAFGEPGLVRADAGAVRHILANLLANALAYTAEGGIVRADV
                     RFEESAGILTLSDSGRGFTRREASVAGKPFERFDRPGTVTGAGLGLAIAMELARRMGG
                     AMRLAGGPGEIKGAVMELRLPRL"
     gene            1134..>2361
                     /locus_tag="VNN98_08600"
     CDS             1134..>2361
                     /locus_tag="VNN98_08600"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM62200.1"
                     /translation="MLRGFAALAVIFTALMPIAPAAAQAPVYQVISNDPNGLEVRFHG
                     LPLRGVHADDNQNALSIDFQQPVDGAVFDRLSGDLPQWISMAYANFDNGVIRSPRPVT
                     FLTRSEPDGFSLRIVPRGPPPQQFAQAQAGPPPPMRGNYGPQQQLYPAPAPYVPPQAA
                     YAGFHTYGEYAQLRAYEAQELAIRRGDPMWQLAYGRAAMQSESGLGLRNETNWYHGGD
                     LMIATDLDAKLSFAPGIALVGDAKWTDVSGKNVRLAGGTIADTSKDLVTGAAGFAFEL
                     GRDSELRLEALEGNHVTGGKLGLYSGTPTGFGYVDVNFHQPYVDTPTAVDNRADTDNA
                     SLGFTGQLGYGLWASAAGHYTRYGVHGDSEVARTAGWDANLRWNADTWGGLLAGISYD
                     GHGEYRINYDTRTGTAP"
BASE COUNT          395 a          821 c          750 g          395 t
ORIGIN      
        1 cgcgcactgt ttgccggtga actcgctttt cgcgacagcg gacgggtgat cgcggtgctg
       61 ttcgatgccg caaacctggt gcccgcccgc gccgcgctgg tgcctgcagg ccaggctccc
      121 cttgccgcag tggtccccgg ctggcctgtg gcggtgacca cccaaatgga tgaaacgggc
      181 gcgctgcaaa gctggaccgg accgctctat ctcttcgtca tcctgggccc ggcgctggct
      241 ggcggctggc tggccgcttt gttcgtgggc gccttcgagc gccaggcgcg ggcctcgcgc
      301 gccataaggg cgctcaaatc cacccgcccc atcgaagcca agctgatggt acggctggcc
      361 aatgccgaac gcggcgcgat ggaggcgcta cgcgccaaat ccgaattcat cgcccatatg
      421 agccacgaat tgcgcacacc gctcaatgca gtgatcggtt tttccgaaat catcgccgag
      481 gaattcttcg gtcccaccgg ccatcccaaa tacagcgaat atgcccgcga catcagcaat
      541 gcggggcgcc agctgcacgc caagatcggc gacatactgg aattcgccaa tatcgaagcg
      601 ggccgctatc ccctgaccga ggaagcggtg gagcttgccg ccctggcgca agcctgcgtg
      661 gaagatcagc aaggccgcgc tttttcccgc cgcatctcgc tcagcctggc tttcggcgag
      721 ccgggcctgg tgcgcgccga cgccggcgcg gtgcgccaca tcctggccaa cctgctggcc
      781 aatgccctcg cctataccgc cgagggcggc atcgtgcgcg ccgatgtccg cttcgaagag
      841 agcgcgggca tactcacctt gagcgacagc ggccggggct ttacgcgccg agaggcgtct
      901 gtagcgggca aacccttcga gcgcttcgac cggcccggca cggtgaccgg cgccggcctg
      961 ggcctggcca tcgccatgga attggcacgg cgcatgggcg gggcgatgcg gctggccggc
     1021 ggccccggcg agatcaaggg cgcggtgatg gaattgaggc taccccggct atgagcgacg
     1081 tttacgcctt gttaaccatg gttaaccaag ctgctccgca gaagggaact gcgatgcttc
     1141 gggggtttgc cgcgctggcc gtgatattca cggccctgat gcctatcgcg cccgccgcgg
     1201 cccaggcgcc cgtctatcag gtcatcagca acgatcccaa cggtctggaa gtgcgtttcc
     1261 acggcctgcc gctgcgcggc gtccatgccg acgacaatca gaacgcgctc tccatcgatt
     1321 tccagcagcc ggtggacggg gcggtgttcg accgtctgtc gggcgacctg ccgcaatgga
     1381 tttccatggc ctatgccaat ttcgacaatg gcgtgatccg cagcccccgt cccgtcactt
     1441 tcctgacccg gagcgagccc gacggctttt cgctgcgcat cgtgccgcgc ggtccgccgc
     1501 cgcaacaatt tgcccaggcc caggccggcc cgccgccgcc gatgcgcggc aactatggcc
     1561 cgcagcagca gctttatccc gcgcccgcgc cctatgtgcc gccccaggcg gcctatgccg
     1621 gtttccacac ttacggcgaa tacgcccagt tgcgcgccta tgaagcgcag gaactggcga
     1681 tccgccgcgg cgatcccatg tggcagctgg cctatggccg cgccgctatg caaagcgaat
     1741 ccggcctggg cctgcgcaac gagaccaact ggtatcatgg cggcgatctg atgatcgcca
     1801 ccgacctgga cgccaagctc agcttcgccc ccggcatcgc cttggtcggc gacgccaaat
     1861 ggaccgacgt cagcggcaag aatgtgcgcc tggccggcgg caccattgcc gacacctcca
     1921 aggatctggt caccggcgcg gcgggctttg ccttcgagct ggggcgcgac agcgaattgc
     1981 ggcttgaggc cttggaaggc aatcacgtca ccggtggcaa gctcgggctt tattccggca
     2041 cgcccaccgg cttcggctat gtcgatgtga acttccacca gccctatgtc gacacgccca
     2101 ccgcggtgga caaccgcgcc gacaccgaca atgccagcct tgggtttacc ggacagctcg
     2161 gctacggact gtgggccagc gcggcggggc attacacccg ctatggcgtg catggcgact
     2221 ccgaagtggc gcgcaccgcc ggctgggatg cgaacctgcg ctggaatgcc gacacctggg
     2281 gcgggctgct ggccggcatc tcttacgacg ggcacggcga ataccgcatc aactacgaca
     2341 cccgcaccgg cacggcaccc a
//
LOCUS       DATMDK010000448         3627 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1586573,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000448 DATMDK010000000
VERSION     DATMDK010000448.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3627)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3627)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3627
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1586573"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..703)
                     /locus_tag="VNN98_08605"
     CDS             complement(<1..703)
                     /locus_tag="VNN98_08605"
                     /inference="COORDINATES: protein motif:HMM:NF015684.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LptF/LptG family permease"
                     /protein_id="HWM62201.1"
                     /translation="MSQEGARAVYLAPWGLYTRYMLGAYLRHIVMVTGALMTIALTID
                     LWPQVPLFSGDPLHVVWSLVRLTCLRLPDLLPPFIPFATFLGVAWSESAFTESRERLL
                     IWNSGRSPLFCLIPALLTGLVMGAALFALDAWLRPAAIHVQIAERLGREGIRLDRSQS
                     GGNHWIALPDGLLRAEIEYGPPLKLHNVTVYKLDSDGHLAEVDTASVAQPQAKDRWLL
                     EDGHYWRADSTDRGAV"
     gene            complement(700..2019)
                     /locus_tag="VNN98_08610"
     CDS             complement(700..2019)
                     /locus_tag="VNN98_08610"
                     /inference="COORDINATES: protein motif:HMM:NF015684.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LptF/LptG family permease"
                     /protein_id="HWM62202.1"
                     /translation="MTASLPVPRTTLSVTLANFLRGDYARGFFVRIASQALAVIILIE
                     AIFLAEHFTWVFRDAVRHEADLSGIALVLACTSTEIFDLALAIAVLMAAYLALLRMRE
                     NQELLVLFASGLGPYQLGALVVIVALAGQMVGTIGSGVVDPLSRYAQRSILFSSELRS
                     LKKGVAKNEFYYFPSYVAYAMDHVAGGAPPPRAPGVVPVIDASRDVPAANHDRTLFVY
                     QQTGPHTSRVVTSAQARLDGPDRSGKIVLNLNDFTSHTFADAHPLVGENGAARAGPVK
                     CATCVDTPKDGPPIIMKVRDMSQLMMVDQLLPFTARSSNTDEQTVFEQLFVPDYQTGA
                     SRAAQMQLLAERFSRSLLSFLAPLVALLGVALTNRLTNWFALPLCCLALMSVNLLCEW
                     VITQVGPLSVAGALLPVLLLYGGIAYAAFTLIVWRHTDFVRPQLARS"
     gene            complement(2016..2732)
                     /gene="lptB"
                     /locus_tag="VNN98_08615"
     CDS             complement(2016..2732)
                     /gene="lptB"
                     /locus_tag="VNN98_08615"
                     /EC_number="7.5.2.5"
                     /inference="COORDINATES: protein motif:HMM:TIGR04406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009898 - cytoplasmic side of plasma
                     membrane [Evidence IEA];
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0015221 - lipopolysaccharide transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015920 - lipopolysaccharide transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter ATP-binding protein"
                     /protein_id="HWM62203.1"
                     /translation="MLSAQHLVKSFAGRRVIEDVTLQLARGEVVGLLGPNGAGKTTTF
                     QMLTGMITPDAGAIAMDGHNVTTMPFYDRARFGIAYLPQAPFVPRSLTVEQNITLVLE
                     ARHPGASARKAKMAELFEEFRLEDVRGKRVGELSGGQRRRCEIAITLACEPSFAMLDE
                     PFAGVDPHATEEIGQMIHHLADRGIGVLITDHKARELLGIVHRAYVIESGRVLAEGDV
                     AEIIADQDVRRVYLGEEFRL"
     gene            3113..>3627
                     /locus_tag="VNN98_08620"
     CDS             3113..>3627
                     /locus_tag="VNN98_08620"
                     /inference="COORDINATES: protein motif:HMM:NF012382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HWM62204.1"
                     /translation="MTTHSAAAEQKAILAESDLPERKSVVDDFAGYRALRRRIEDLEN
                     SGQSLPFFEPRDGVSHSVIRRSEKSLISFSGYNYLGLSGHPAVTAAAKNAIDKYGTSA
                     SASRIVAGQIELHGELERKLASFLGTEDALIFISGYLTNVSVISHLLARPDAVIYDSG
                     AHNSIITGARLS"
BASE COUNT          735 a         1141 c         1149 g          602 t
ORIGIN      
        1 gcaccgcgcc gcgatcggtg gaatcggcgc gccagtagtg gccgtcttcc agcagccagc
       61 ggtccttggc ctgcggctgc gccactgacg ccgtgtccac ctcggccaga tggccgtcgc
      121 tgtccagctt gtagacggtg acattgtgca gcttcagcgg cgggccatat tcgatctcgg
      181 cccgcagcaa gccgtccggc aaggcgatcc agtgattgcc gccgctttgg ctgcggtcca
      241 ggcggatgcc ttcgcggccc aaccgctcgg cgatctgcac atggatcgcc gcaggcctga
      301 gccaggcatc caacgcaaac agggccgcgc ccatcaccag ccccgtcagc agcgccggga
      361 tcaggcaaaa caagggcgag cggccgctgt tccagatcag caggcgctcg cgcgattcgg
      421 taaaggcgct ttcgctccac gccacgccca ggaaggtggc gaagggaatg aagggcggca
      481 gcaggtcggg cagccgcagg caggtcagcc gcacaaggct ccacacaaca tgcagcggat
      541 cgccgctgaa cagcggcacc tgcggccaca gatcgatggt cagcgcgatg gtcatcagcg
      601 cgcccgtcac catcacgata tggcgcagat acgcgcccag catgtagcgc gtataaagcc
      661 cccatggcgc gagatagacg gcgcgggcgc cttcctggct catgagcgcg ccagttgcgg
      721 ccgcacgaaa tcggtgtggc gccacacgat cagggtgaag gcggcataag cgatgccgcc
      781 atagagcagc agcaccggca gcagcgcgcc cgccacgctg agcgggccga cctgggtgat
      841 gacccattcg cacagcagat tcaccgacat cagcgccagg cagcagagcg gcagcgcgaa
      901 ccagttggtc aaccggttgg tcagagccac gcccagcagc gccaccagcg gcgccaagaa
      961 agacagcagg ctgcgggaga aacgctcggc cagcaattgc atctgcgccg cacgggacgc
     1021 acctgtctgg taatccggca cgaacagctg ctcgaagacg gtctgctcgt cggtattgct
     1081 gctgcgcgct gtgaagggca aaagctgatc caccatcatc aactgggaca tgtcgcgcac
     1141 tttcatgatg atgggcggcc catctttcgg cgtgtccaca caggtggcgc atttgaccgg
     1201 accggcacgg gccgcgccat tttcgccgac caggggatgg gcgtcggcga aagtgtgcga
     1261 ggtaaaatcg ttgaggttca gcacgatctt gccgctgcgg tcgggaccgt ccagccttgc
     1321 ctgcgcggag gtcaccaccc gcgacgtgtg gggtccggtc tgctgataga cgaacaaagt
     1381 acggtcgtga ttcgcagcag gcacgtcgcg gctggcgtca atcaccggca ccacgcccgg
     1441 ggcgcgcggc ggcggcgcgc caccggccac atgatccatg gcgtaggcga cataggaggg
     1501 aaaataataa aactcattct tggcaacgcc cttcttcagc gagcgcagtt ccgaactgaa
     1561 caggatggag cgctgggcat agcgcgacag gggatccacc acgcccgagc cgatggtgcc
     1621 caccatctgt cccgccagcg ccacgatcac caccagcgcg cccagttgat aagggcccag
     1681 gccagaggcg aacagcacaa gcagttcctg attctcgcgc atcctgagca gagcaagata
     1741 ggccgccatc agaaccgcga tggccagcgc cagatcgaat atctcggttg aggtacaggc
     1801 caacaccagc gcgatgcccg acagatcggc ttcatggcgc acagcgtcgc ggaacaccca
     1861 agtgaaatgc tcggccagga agatggcctc gatcaaaatg atcaccgcca gcgcctggga
     1921 ggcgatgcgg acaaagaagc cgcgcgcgta atcgccgcgc aggaaattgg ccaaggtcac
     1981 actgagcgtg gtgcggggca ccggtaaaga cgcggtcaaa gccggaattc ctcgcccaga
     2041 tagacgcggc gcacatcctg gtcggcgatg atttccgcga cgtcgccttc cgccagcacc
     2101 cggccgcttt cgatcacgta ggcgcggtgc acgatgccca gcagctcgcg cgccttatgg
     2161 tcggtgatca atacaccgat gccgcggtct gcgagatgat ggatcatctg gccgatctcc
     2221 tcggtggcgt gcggatccac gccggcaaag ggctcgtcca gcatggcgaa gctgggctcg
     2281 caggccagcg tgatggcgat ctcgcagcgg cggcgctggc cgccggacaa ttcgcccacg
     2341 cgtttgccgc gcacatcttc caggcggaac tcttcaaaca actcggccat ctttgccttg
     2401 cgcgcggatg caccagggtg acgggcttcc agcaccagcg tgatgttctg ttccaccgtc
     2461 aagctgcgtg gcacgaaggg cgcctggggc agataggcga tgccgaagcg ggcgcggtcg
     2521 taaaacggca tggtggtaac gttgtgcccg tccatggcga tggcaccggc atcgggcgtg
     2581 atcatgccgg tcagcatctg gaaggtggtg gtcttgcccg cgccgttggg accgagcagg
     2641 ccgaccacct cgccgcgcgc aagctgcaag gtgacgtctt caatcacccg gcgcccggcg
     2701 aaagatttca ccagatgctg cgcagaaagc ataccttgct cttcaaatct gtgagatgtc
     2761 gcgcccatgt cgtaagccgg cccgagtcgg ctcggcagcg cttttggccc ttgtcaggat
     2821 actatgacgc aggttttggt ctgtataggc gcggcacgga accggcaccg ccttgaagaa
     2881 atgctaccga ttgttacgta gggggtcgcg cgaaacgggg aaataccggc ttttaggtct
     2941 agccttccct gaatagagtg aagtttttca aggcccaacg acgcgatttt tgagggcaaa
     3001 tatagggact taccgtgacg gcgaaggttg tggcataacg atttccggtt atgctccgtt
     3061 gatgcggcct tggggtcgtg gggcgaattc tagagattag caccgagggg caatgacgac
     3121 ccattctgcg gccgccgaac aaaaggccat tttggccgaa agtgatctgc ccgagcgcaa
     3181 aagcgtcgtt gacgattttg ccggctatcg tgcgctgcgc cgccggatcg aagatctgga
     3241 gaatagcggc cagagcctgc ctttcttcga gccccgcgat ggcgtcagcc acagcgtcat
     3301 ccgccgcagc gaaaagagcc tgatcagctt ttccggatac aactatctgg gcctcagcgg
     3361 ccatcctgcc gtgaccgcgg ccgccaaaaa cgccatcgac aaatacggca ccagcgcttc
     3421 ggccagccgc atcgtggcgg ggcagatcga actgcatggc gaattggagc gcaagctcgc
     3481 cagcttcctg gggaccgagg acgcgctgat cttcatcagc ggctatctca ccaatgtcag
     3541 cgtgatctcg catctgctgg cccgtcctga tgccgtgatc tatgactccg gcgcccataa
     3601 cagcatcatc accggcgcgc gcctgtc
//
LOCUS       DATMDK010000449         2088 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_194992,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000449 DATMDK010000000
VERSION     DATMDK010000449.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2088)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2088)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2088
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_194992"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1413)
                     /locus_tag="VNN98_08625"
     CDS             complement(<1..1413)
                     /locus_tag="VNN98_08625"
                     /inference="COORDINATES: protein motif:HMM:NF014044.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF87 domain-containing protein"
                     /protein_id="HWM62205.1"
                     /translation="MTLHIERPTARPAAPPFRERRGLPAAPPIRLAHIVSVSGSHAVA
                     MLERQDAIANEARVQIGALIKIVTPTSAVMGVVSGISAPMPAAEGEPQSLGLIEINLA
                     GEVVPDHNRRLTFRRGVSSLPTLGDPVLLADKHDLTRVYAPPQAASIKIGSLFQEPSV
                     PARLLVDDLLAKHFLVVGSTGSGKSSAVTCILQRLLAEHAHAHMLILDIHNEYSAAFG
                     GLVEPINLDNFSLPFWMLDFTEMVAALVSRDAHHDAEVEILSDAVVHAKKRYSESATA
                     RAGALRKSENNLVITVDTPTPFRMSDVMLWLDEQLGRLERTQFLLPYRRLKARIESLA
                     TDQRYNFMFGSLSVRDTMGEVLARLFRVPAEGRPISVIDLSTVPPEILDVVISVISRL
                     AFDLAVWSKGGLPMLLVCEEAHRYAPVDDSKFMPTRQALSRIAKEGRKYGLSLCLVTQ
                     RPCELDATILSQCGTAVVLRL"
     gene            complement(1410..>2088)
                     /locus_tag="VNN98_08630"
     CDS             complement(1410..>2088)
                     /locus_tag="VNN98_08630"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="HAMP domain-containing sensor histidine kinase"
                     /protein_id="HWM62206.1"
                     /translation="RTPLNAIIGFSDLIRTPGATSQAQASEYADHIAHAGRRLLDVVS
                     DVLDMSKLESGSLILDKHPLRIDEVLEIALENSRKLFDAKQQPVDVRLEVGLPEIHGD
                     GKRLRQLFANLLSNASKFTAEKGRILVMAKALKDGSVTIADTGVGMTHEQIVVAVKPF
                     AQVQGYLARTQEGTGLGLPLAMGIVKLHGGSLYLDSQPDAGTTAVVTLPRDAASLAAP
                     AAIGKVA"
BASE COUNT          362 a          653 c          713 g          360 t
ORIGIN      
        1 caggcgcagc accacggcag taccgcattg cgacaggatg gtggcgtcca gctcgcaggg
       61 acgctgcgtc accaggcaca ggctgaggcc gtatttgcgc ccctccttgg cgatgcgcga
      121 caaggcctgg cgggtgggca tgaatttgga atcgtcgacc ggggcgtagc gatgcgcttc
      181 ctcgcacacc agcagcatgg gcaggccccc cttgctccac accgccagat cgaaggccag
      241 gcgcgagatc accgagatca ccacgtccag gatttccggc ggcacggtgg aaagatcgat
      301 caccgagatg gggcggccct cggccggcac gcggaacagc cgcgccagca cttcgcccat
      361 cgtgtcccgc accgacaggc tgccgaacat gaagttgtag cgctggtcgg tggccaggct
      421 ttcgatccgc gccttgagcc ggcgataggg gagcagaaac tgggtgcgtt ccagccggcc
      481 cagctgttcg tccagccaca acatcacgtc cgacatgcgg aaaggggtgg gcgtgtccac
      541 cgtgatcacc agattgtttt ccgatttgcg tagcgccccg gcccgcgccg tggcggattc
      601 gctgtagcgc ttcttggcat gcaccaccgc gtcggagaga atttccactt ccgcatcgtg
      661 atgggcgtcg cggctgacca gcgctgccac catttcggtg aaatccagca tccagaaagg
      721 caggctgaaa ttgtccagat tgatcggctc caccagcccg ccgaaagcgg cggaatattc
      781 attgtggatg tccaggatca gcatatgggc atgggcatgc tccgccagca agcgctgcag
      841 gatgcaggtc accgctgagg acttgcccga gccggtcgaa cccaccacca ggaaatgctt
      901 ggccagcagg tcatccacca acaggcgcgc cggaacgctg ggctcctgga acaggctgcc
      961 gatcttgatg ctggcggcct ggggcggggc atagacacgg gtcagatcat gcttgtcggc
     1021 cagcagtacg ggatcgccca gggtgggcag gctggaaacg ccgcggcgga aagtcagccg
     1081 gcggttgtgg tcgggcacca cttcgcccgc caggttgatc tcgatcaggc ccagcgactg
     1141 gggctcgcct tcggcggcgg gcatgggggc gctgatgccg ctgaccacgc ccattacggc
     1201 gctggtgggc gtgacgatct tgatcagggc gccaatctgc acccgcgctt cattggcgat
     1261 ggcgtcctgg cgctccagca tcgccacggc atggctgccg gagaccgaga cgatatgggc
     1321 cagccggatc ggcggcgcgg cgggcaggcc gcggcgttca cggaagggcg gcgcggcggg
     1381 cctggccgtg ggacgttcga tgtgcagggt cacgcgactt ttccgattgc ggcgggagcg
     1441 gcgaggctgg cggcgtcgcg cggcaaggtg accaccgcgg tggtgccggc gtcaggctgg
     1501 ctgtcgagat agagactgcc gccatgcagc ttgacgatgc ccatcgccag cggtaggccc
     1561 aggccggtgc cttcctgggt gcgggcgaga tagccctgca cctgggcgaa gggtttcacc
     1621 gccaccacga tctgttcatg agtcatgccg acaccggtgt cggcgatggt gacgctgccg
     1681 tccttcagtg ccttggccat caccaggatg cggccctttt cagcggtgaa cttgctggca
     1741 ttggacagaa gattggcgaa cagctgacgc agccgcttgc cgtcgccatg aatttccgga
     1801 agaccgactt ccaggcgcac atccaccggc tgctgcttgg cgtcgaacag cttgcggctg
     1861 ttttccagcg cgatctccag cacttcatcg atccgcagcg gatgcttgtc caggatcagg
     1921 ctgcccgatt ccagcttgga catgtccagc acgtccgaca ccacgtccag cagccggcgt
     1981 ccggcatggg cgatatggtc ggcatattcc gacgcctggg cctggctggt ggcgccgggt
     2041 gtgcggatca ggtcggagaa accgatgatg gcattgagcg gggtgcgc
//
LOCUS       DATMDK010000450         2158 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_893711,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000450 DATMDK010000000
VERSION     DATMDK010000450.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2158)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2158)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2158
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_893711"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1377
                     /gene="trmFO"
                     /locus_tag="VNN98_08635"
     CDS             <1..1377
                     /gene="trmFO"
                     /locus_tag="VNN98_08635"
                     /inference="COORDINATES: protein motif:HMM:NF003739.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methylenetetrahydrofolate--tRNA-(uracil(54)-
                     C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO"
                     /protein_id="HWM62207.1"
                     /translation="CRPAKGPPMAADLHIIGGGLAGSEAAWQAAESGVAVILHEMRPV
                     RGTQAHHTDSLAELVCSNSFRSDDAMNNAVGLLHEEMRRAGSLVMRAADAHKLPAGGA
                     LAVDRHGFSAAVTTALESHPRVTIAREEVTALPPEDWGSVIVATGPLTSPQLGAAIGA
                     ATGQDQLAFFDAIAPIVHRESIDFDIAWFQSRYDRRGPGGGVADYINLPLDEAQYKGF
                     VAALLAGEKTDFKEWEKSTPYFEACLPIEVMAARGEQTLAFGPMKPVGLMDPRNGQRA
                     HAVVQLRQDNRLGTLWNMVGFQTKLKHAEQVRIFRTIPGLQNAQFARLGGLHRNTFIN
                     SPRLLDDQLRLKSRPHLRFAGQVTGVEGYVESAAIGLLAGRFAAAQLLGTAMPPPPPT
                     TAFGALLSHITGGADARTFQPMNVNFGLFPELPKSAKIRGKDRKQAMSARALQDLGAW
                     LGEKAAAE"
     gene            1434..1832
                     /locus_tag="VNN98_08640"
     CDS             1434..1832
                     /locus_tag="VNN98_08640"
                     /inference="COORDINATES: protein motif:HMM:NF014534.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HPF/RaiA family ribosome-associated protein"
                     /protein_id="HWM62208.1"
                     /translation="MDIPFELSFHNLESSDALKDAVRGHVNKLEQFHDHIIGCRVVIE
                     MPHKSQKASGNPPDVHIVVRVPGKEIVVSKELAHNGHKKAATDAYAVLDEAFSVAQKQ
                     LKDYRRVSHGDVKYKSGEPRGTGGPSSIDG"
     gene            complement(1829..>2158)
                     /locus_tag="VNN98_08645"
     CDS             complement(1829..>2158)
                     /locus_tag="VNN98_08645"
                     /inference="COORDINATES: protein motif:HMM:NF012705.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="squalene/phytoene synthase family protein"
                     /protein_id="HWM62209.1"
                     /translation="LLRALPFHNGRHKLYLPLDLLAALHLTPEEFFHLEKADTRLAAA
                     IRQMALKAKDHFLAARRAPKPGAALAAVLPAALVPVYLRKLSVGRDVPIHRRQMALLS
                     AAMRKRL"
BASE COUNT          415 a          696 c          681 g          366 t
ORIGIN      
        1 tgccgacctg ctaaaggccc gcccatggcg gcagatctgc acattatcgg gggcgggctg
       61 gccgggtcgg aagcggcctg gcaagcggcc gaatcgggtg tggcggtgat tctccacgag
      121 atgcgccccg tgcgcggaac ccaggcccac cacaccgatt ccctggcgga gctggtttgc
      181 tccaattcct tccgctccga cgacgccatg aacaatgccg tcggcctgct gcatgaggaa
      241 atgcggcgcg ccggatcact ggtgatgcgc gccgccgatg cccacaagct tcctgcgggc
      301 ggagcgctgg cggtggaccg gcatggtttt tccgccgccg tcaccacggc gctggagtcc
      361 catccgcgcg taacgattgc gcgcgaggaa gttaccgctt tgccgccgga agattggggc
      421 agcgtgattg tcgccaccgg gcccttgacc tcgccgcagc tgggcgccgc gattggcgcc
      481 gccacgggcc aggaccaact ggccttcttc gacgccatcg cgcccatcgt gcaccgcgag
      541 tccatcgact tcgacatcgc ctggttccaa tcgcgctatg acaggcgcgg cccgggcggc
      601 ggcgtggccg attacatcaa cctgccgctg gacgaggccc agtataaagg cttcgtcgcc
      661 gctttgctgg cgggcgagaa gaccgacttc aaggaatggg aaaagtccac gccctatttc
      721 gaagcctgcc ttcccatcga agtgatggcg gcgcgcggcg aacagacttt ggctttcggg
      781 ccgatgaagc cggtggggtt gatggatccg cgcaacggac agcgcgcgca tgccgtggtg
      841 cagctgcgcc aggacaaccg cctcggtact ttgtggaaca tggtgggctt tcagaccaag
      901 ctgaaacatg ccgagcaggt gcgcatcttc cgcaccatac cgggcctaca gaacgcgcaa
      961 ttcgcccgcc tgggcgggtt gcaccgcaac accttcatca attcgccgcg cctgcttgat
     1021 gaccagttgc ggctcaagtc gcgtccccat ctgcgctttg ccggtcaggt gaccggcgtg
     1081 gaaggctatg tcgaaagcgc ggccatcggc cttctggccg gacgcttcgc ggccgcgcaa
     1141 ttgctgggaa cggccatgcc gccaccgccg cccaccacgg ccttcggcgc ccttctgtcc
     1201 cacatcaccg gcggcgccga tgcccgcact ttccagccga tgaatgttaa tttcggattg
     1261 ttcccggaat tgcccaaaag cgccaaaatc cgcggcaaag accgcaagca ggcaatgtcc
     1321 gcgcgggcgc tgcaggatct gggcgcctgg ctgggcgaaa aagccgccgc cgaataggcg
     1381 aaaccgtgta cagttccgca cgttgtcaag ataacagcaa agcggatcaa tccatggata
     1441 tcccttttga actttccttc cacaacctcg aatcctccga tgccctgaaa gacgcggtgc
     1501 gcgggcatgt caacaagctg gaacagtttc acgaccacat catcggctgc cgcgtggtga
     1561 tcgagatgcc gcacaagagc cagaaggcca gcggcaatcc gccggacgtg catatcgtgg
     1621 tgcgggtgcc tggcaaggaa atcgtggtga gcaaggaact ggcgcataac ggccacaaga
     1681 aggccgccac cgatgcctat gccgttctcg acgaggcctt ttccgtggcg cagaagcagc
     1741 tgaaagatta tcgccgcgtc agccatggcg atgtgaaata caaaagcggt gagccacgcg
     1801 gcaccggcgg gcccagcagc atcgacggct agagccgctt tcgcatggcg gcgctgagca
     1861 gcgccatttg ccgccgatga atgggtacat cgcgtccgac gctaagcttg cgcaaataga
     1921 ccggcaccag ggcggcaggc aataccgccg ccagcgcggc gccgggcttg ggcgcccggc
     1981 gtgccgccag aaaatgatcc ttcgccttca gtgccatctg acggatggcg gcggccaggc
     2041 gcgtgtcggc tttctccaga tgaaagaatt cctcaggcgt gaggtgcagc gccgccagaa
     2101 gatcaagcgg caggtacagc ttgtgccgcc cattatggaa cggcagcgcc ctgagcaa
//
LOCUS       DATMDK010000451         3081 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1828558,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000451 DATMDK010000000
VERSION     DATMDK010000451.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3081)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3081)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3081
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1828558"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..605)
                     /locus_tag="VNN98_08650"
     CDS             complement(<1..605)
                     /locus_tag="VNN98_08650"
                     /inference="COORDINATES: protein motif:HMM:NF014458.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM62210.1"
                     /translation="MHDIKAIRDDTSAFVRGLARRGMADAQAVADNLLKKDKALRDLL
                     VRLQNDQARRNEASKLIGQAKAKKDEAGAAALMAEVAGLKDAIQLGEADQRVLEKELR
                     DALAIIPNIPADDVSVGADESANVPVPARAFGTPPGINAPKQHFEIGEALGQMDFERA
                     AKVSGARFVYLKGDLAKLERALGAFMLDSHTGKFGYTEVSPP"
     gene            802..1851
                     /locus_tag="VNN98_08655"
     CDS             802..1851
                     /locus_tag="VNN98_08655"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HWM62211.1"
                     /translation="MTITARIKSTLDALDGWLAQYGRFGSTIVLTAMTVGVAVPLHVL
                     VRLAEGFPVESMAILNLAIEITIVTAPIIFYARDVIAQLRSSRTTMDEMSRRLEISAA
                     QAENANRAKSAFLANMSHELRTPLNAIMGFSEVMKDEHLGPVQNPRYLAYAGDIHASG
                     CYLLGIINDILDLSKIEAGKMSLENAEEFPLCQALEGSLSLCASLGEKFGVRIESRLP
                     PEDVRLLAVERMIRQIMINLVGNAIKFTPAGGSVSLDGGARADGGYAITVRDSGIGMS
                     EEEIAKALTPFGQIENKLTATHNGTGLGLPLAKAMLELHGGVMEINSSPGDGTLITLS
                     FPAYRISIGRKVAAA"
     gene            complement(1848..2648)
                     /gene="tatC"
                     /locus_tag="VNN98_08660"
     CDS             complement(1848..2648)
                     /gene="tatC"
                     /locus_tag="VNN98_08660"
                     /inference="COORDINATES: protein motif:HMM:TIGR00945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_process: GO:0015628 - protein secretion by the type II
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase subunit TatC"
                     /protein_id="HWM62212.1"
                     /translation="MITPSPEDEAALDATKAPLMEHLLELRTRLIWSVVSFGVCFGIS
                     FGFAKQIFEFLTAPLHHATNHMIYTALTEVFFTYVKIGMFGGICLGFPVIAAQIWIFV
                     APGLYRHEKRAFLPFLLWTPVLFTMGAAFVYYIMLPFSIKFFAGYQMPATPDAMGVQL
                     QAKVSDYLDFVMTLMFAFGLTFQLPVLLSLLAKVGIVTAKALREMRRYAIVALFAVAA
                     IFTPPDAISMLSLAVPLVLLYEISILSVVMIERGKAREDAAAKDATPA"
     gene            complement(2645..>3081)
                     /gene="tatB"
                     /locus_tag="VNN98_08665"
     CDS             complement(2645..>3081)
                     /gene="tatB"
                     /locus_tag="VNN98_08665"
                     /inference="COORDINATES: protein motif:HMM:TIGR01410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0015031 - protein transport [Evidence IEA];
                     GO_process: GO:0015628 - protein secretion by the type II
                     secretion system [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="Sec-independent protein translocase protein
                     TatB"
                     /protein_id="HWM62213.1"
                     /translation="ARSMFDLFSWSHIVILLVVALVVVGPKDLPRLMHMAGKWAGKAR
                     AMANEFRKSFDEMARQAELDELRKEIEDLKKNNPVTDLANSMADATAAINNPVGAMMD
                     GAGQTAAETTAPMEGHIEPRSGELEVTDSGQAPAPPAGPVAP"
BASE COUNT          587 a          990 c          932 g          572 t
ORIGIN      
        1 ggcggcgaaa cttcggtgta accgaatttc ccggtatggc tgtccagcat gaacgcaccc
       61 aacgcccgtt ccagtttcgc cagatcgcct ttcagataga cgaagcgcgc acccgacacc
      121 ttggcggcgc gctcgaagtc catctggccc agcgcctcgc cgatctcgaa atgctgtttg
      181 ggagcattga ttcccggtgg cgtgccaaag gcccgcgccg gtaccggcac attggcgctc
      241 tcatccgcgc caactgacac atcgtcagcc ggaatgttcg gaataatcgc caatgcatcg
      301 cgtaattctt tttcgagcac ccgttggtca gcttcgccca actgaatggc gtccttcagt
      361 ccagcgactt cggccatcaa ggccgcggcg cccgcttcgt ccttcttggc cttggcctgg
      421 ccgatcagct tggaggcttc gttgcgccgc gcctggtcgt tctgcagccg caccaataag
      481 tcgcgcaagg ccttgtcttt tttcagcaaa ttgtcggcaa cggcctgcgc atccgccatg
      541 ccccggcgcg ccagcccgcg cacaaaggcg ctggtatcgt cgcgaatagc cttgatgtcg
      601 tgcatggcat tctcctgctc gcccggtcat gccacggcct catgcccggg tcaaaagccg
      661 cttttccgcc aggcccgggt taccaaatcc ctaatttccc agctgcaatt tcgcagcagg
      721 gcgaaaccat gccgcaaccc gggcgcgagt aacattacag cgtattcgtg ggggtatacc
      781 cgggtgaacc ggcgttctgg aatgaccatc accgctcgca tcaagagcac gctcgacgcg
      841 ttggacggct ggctggcgca gtatggccgc ttcggctcga ccatcgtgct gaccgccatg
      901 accgtgggcg tcgccgtgcc gctgcatgtg ctggtgcggc tggcggaggg ctttcccgtc
      961 gaatcgatgg ccattctcaa cctcgccatc gagatcacca tcgtcacggc gccgatcatc
     1021 ttctatgccc gcgatgtgat cgcccagctc cggtcctcgc gcaccaccat ggacgagatg
     1081 tcccgccgcc tggaaatctc cgccgcccag gccgagaacg ccaaccgcgc caagtccgcc
     1141 ttcctggcca atatgagcca tgagctgcgc accccactga acgccatcat gggcttttcg
     1201 gaagtgatga aggacgagca tcttggcccg gtgcaaaatc cgcgctatct cgcctatgcc
     1261 ggcgacatcc atgccagcgg ttgctatttg ttgggcatca tcaacgacat tctcgacctc
     1321 tccaagatcg aggccggcaa gatgtcgctg gagaatgccg aggaatttcc cctatgccag
     1381 gcgctggaag gctcgctctc cctctgcgcc agcctgggcg agaagttcgg cgtccgcatc
     1441 gaaagccggc tgccgccgga agatgtgcgc ctgctggcgg tggagcgcat gatccgccag
     1501 atcatgatca atctggtggg caatgccatc aaattcaccc cggccggcgg cagcgtcagc
     1561 ttggacggcg gcgcccgtgc cgatggcggc tatgccatca cggtgcggga ttccggcatc
     1621 ggcatgagtg aggaagaaat tgccaaggcg ctgacgccgt tcggccagat cgagaacaag
     1681 ctgaccgcca cccataacgg caccggactg ggcttgccgc tggccaaggc gatgctggaa
     1741 ctgcatggcg gggtcatgga gatcaacagt tcgccaggcg acggcacgtt gatcactttg
     1801 agcttcccgg cctatcgcat cagcatcggc cgcaaggtcg ccgccgctta ggccggcgtc
     1861 gcgtctttgg cggcggcatc ttcgcgcgcc ttgccgcgct cgatcatcac cacgctcaga
     1921 atcgaaatct cgtagagcag caccagcggc accgccaggc tgagcatcga gatcgcgtcg
     1981 ggcggggtga agatcgccgc caccgcgaac aaggcgacga tggcgtagcg ccgcatctcg
     2041 cgcagcgcct tggcggtgac gatgccgact ttggccagca gcgacagcag caccggcaac
     2101 tgaaaggtca ggccgaaagc aaacatcaag gtcatcacga aatcgagata atcgctgacc
     2161 ttggcctgaa gctgcacgcc catggcgtcg ggcgtggccg gcatctgata gccggcgaag
     2221 aattttatcg agaagggcag catgatgtaa tagacgaagg ctgcgcccat ggtaaacagc
     2281 accggtgtcc acaacaggaa gggcaggaag gcgcgcttct cgtgccggta aaggccgggc
     2341 gccacgaaaa tccagatctg tgccgcgata acgggaaagc ccaggcagat gccgccgaac
     2401 atgccgatct tgacataggt gaagaacacc tcggtcagcg cggtatagat catgtgattg
     2461 gtagcgtgat gcagcggcgc ggtaaggaat tcgaaaatct gcttggcgaa gccgaaagag
     2521 atgccaaagc agaccccgaa ggacaccacc gaccagatca gccgggtgcg cagctccagc
     2581 aggtgctcca tcagcggcgc tttggtggcg tccagcgccg cctcgtcttc cgggctcggc
     2641 gtgatcacgg cgcgacaggt ccggctggcg gcgcgggggc ctgcccggaa tcggtgactt
     2701 caagctcccc gctgcgcggc tcgatatggc cttccatcgg cgcggtggtt tcggcggccg
     2761 tctggcccgc gccgtccatc atcgcgccca ccggattgtt gatggccgcc gtggcgtcag
     2821 ccatggagtt ggcgagatcg gtgaccggat tgtttttctt caggtcttcg atttccttgc
     2881 gcagctcgtc cagttcggcc tggcgcgcca tctcgtcgaa actcttgcgg aattcattgg
     2941 ccatggcgcg ggccttgccc gcccatttgc ccgccatgtg catcaggcgc ggcaaatcct
     3001 tcggcccgac cacgacaagc gcgacgacga gcaggatgac gatgtgactc cagctgaaca
     3061 ggtcgaacat ggaacgcgcc t
//
LOCUS       DATMDK010000452         2238 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1121668,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000452 DATMDK010000000
VERSION     DATMDK010000452.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2238)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2238)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2238
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1121668"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(172..555)
                     /locus_tag="VNN98_08670"
     CDS             complement(172..555)
                     /locus_tag="VNN98_08670"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM62214.1"
                     /translation="MRAVFLIAALLLGAILVPCGSGALAQGLCVEPPMPLPVDGAGLS
                     ADQMRAAMADARNFIAQSGLYQECLINEVEAAKTQAAAASQPFDPAIETSARAKVEAS
                     QKAQEKAGAAANGAMAAYKNAHLPN"
     gene            complement(690..1388)
                     /locus_tag="VNN98_08675"
     CDS             complement(690..1388)
                     /locus_tag="VNN98_08675"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM62215.1"
                     /translation="MVVLDNNALFGQGSDLKGPRLKLNLGPLVGGIALGAAVLVLGSI
                     LLRGFAENGFRLGSQLAWRYAAFVFFAALVAGPACRVAAYFIPSLTPPEKLSRKLVWG
                     FCVSYGIYLLSVFLPDVIRPSAGASLMVLFGGSVVLVMALTAAPLNLPGGRAIIPANV
                     RRVLLAIASIYFWLCYCLMALARISGPHRPDDFYGLSLCLMVVGLLARYADRWVSHKG
                     AEGAHDSSGAVTAH"
     gene            complement(1471..>2238)
                     /locus_tag="VNN98_08680"
     CDS             complement(1471..>2238)
                     /locus_tag="VNN98_08680"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase"
                     /protein_id="HWM62216.1"
                     /translation="RLDPGLVRARELIAQAWLAAGEADKALESLRELENPPAEMIAAA
                     QAIKAAPRSDAGYVRHLFDQFSADYDDRMIGQLSYAAPQILLDLAQLVMPGRGKLKIL
                     DLGCGTGLAGAAFKPLAARLDGVDLSPAMIEKARARRIYDHLQVADLETALSSPGRQY
                     DLILAADTLVYLGDLKTVFQAAPARLHPDGYFLFTVEKADGDGFELGPKRRWRHSEAY
                     LRHLAGHAGFTVAGLVAAAPRYEANQPVEGFAAALKI"
BASE COUNT          467 a          714 c          705 g          352 t
ORIGIN      
        1 gactccgctt tggtggcgtc gagctgccgc cgttccttcg ggattcgaac cgccgcctcg
       61 cccatgaccg gcatgttacg cgattctcgg ccccggcagg cacggcgcgg cgagggaacc
      121 cgcgcccgga agcgcggcaa aaggaatcag gccaaaagaa atcagaaagg tctagttcgg
      181 gaggtgggcg ttcttatagg ccgccatcgc gccattggcg gcggcgcccg ccttttcctg
      241 cgccttttgg ctggcctcca ccttggcgcg ggcactggtt tcaatcgccg ggtcgaaggg
      301 ctggctggcg gcggcggcct gggtcttggc cgcctccacc tcgtttatca gacactcctg
      361 gtagaggccg gactgggcga taaagttgcg cgcatcggcc atggcggcgc gcatctggtc
      421 ggcggatagg ccggcgccat ccaccggcag cggcatgggc ggctcgacgc aaaggccctg
      481 ggccagcgca ccgctcccgc agggcacaag aatggcgccc agcaacaaag ccgcgatcag
      541 aaaaacagca cgcacgcgcc ggtccttttg aatcaacaag tccgctcaaa ccgcaagtgt
      601 cgcatatcga gcggaacctg cgctaggtgc gcgcgaaacg gtttgggaca gaaacccgcc
      661 gcaaatctga caagaaaatg ccggaaatat cagtgcgctg taacagcgcc ggacgaatcg
      721 tgcgcgcctt cggcgccttt gtgcgaaacc cagcgatcgg cgtagcgggc cagaagccct
      781 accaccatca ggcacaggct gaggccgtaa aaatcatcag gccggtgcgg accggaaatc
      841 cgcgccagcg ccatcaagca gtaacaaagc cagaagtaga tagatgctat ggccagcaag
      901 acgcggcgga cattggcggg aatgatggct cggccgcccg gcaaattcag cggcgcggcg
      961 gtcagcgcca tcaccaggac cacgctgccg ccaaacagca ccatcaaact cgctccggcc
     1021 gatgggcgga tgacgtcggg caggaacacc gacagaagat aaattccgta gctgacacag
     1081 aagccccaga ccagcttgcg gctgagcttt tccggcggcg tcaggctggg gatgaaatag
     1141 gccgccaccc ggcaggccgg ccccgccacc agggcggcga agaacacgaa agcggcatag
     1201 cgccaggcca gctggcttcc caggcgaaaa ccgttctcgg caaagccgcg caacaggatg
     1261 gaacccagca ccagtaccgc ggcgcccagg gcaatgccgc cgaccagcgg cccgagattc
     1321 agtttcaggc gcggaccctt caggtctgaa ccttggccga aaagcgcgtt gttatcgagt
     1381 acgaccatgt tgcgcaaagc ccacttaccc ctcttgtgga aggcaacgca ccatcggacg
     1441 aaaagatgcc ttttgttttc gctacttccg tcaaatttta agggctgcgg cgaacccttc
     1501 aacgggctgg tttgcctcgt agcgtggcgc ggcggccaca agtccagcca ccgtgaaacc
     1561 ggcgtgcccg gcgaggtggc gcaaataggc ctcgctgtgc cgccagcggc gcttggggcc
     1621 gagttcgaat ccgtctccgt ccgccttttc cacggtgaaa agaaaataac catccggatg
     1681 gaggcgggcg ggcgcagctt ggaacaccgt cttcagatca cccagatata cgagcgtgtc
     1741 ggccgccagg atcaggtcat attgccgacc gggtgaagaa agcgctgttt ccaggtcggc
     1801 gacctgaaga tgatcgtaaa tccggcgggc acgggccttt tcgatcatgg cgggcgacag
     1861 gtccaccccg tccagccggg ccgccaacgg cttgaacgcc gccccggcca ggccggtgcc
     1921 gcagcccagg tcgagaatct tcagcttgcc cctgcccggc atcaccaatt gcgccaagtc
     1981 gagcaggatc tgcggcgcgg cataagaaag ttgcccgatc atgcgatcgt cataatcggc
     2041 ggaaaattgg tcgaacaggt gacggacata gccggcgtcg gaacgcggcg ccgctttgat
     2101 ggcctgggcg gcggcaatca tttcggcggg cggattttcc agttcgcgca aactctccag
     2161 cgccttgtcg gcttcccccg ccgcaagcca ggcctgtgcg atcaattcgc gggcgcggac
     2221 aagaccggga tccagcct
//
LOCUS       DATMDK010000453         3019 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2493587,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000453 DATMDK010000000
VERSION     DATMDK010000453.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3019)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3019)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3019
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2493587"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(172..711)
                     /locus_tag="VNN98_08685"
     CDS             complement(172..711)
                     /locus_tag="VNN98_08685"
                     /inference="COORDINATES: protein motif:HMM:NF023696.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3617 domain-containing protein"
                     /protein_id="HWM62217.1"
                     /translation="MNRKLGLIAAALILAPGAALAAHGKPGLWTIPSTMQMANAPKMP
                     PGMAEMMKKRGMNVPVAGQPFTSQMCMTAEEVNADKPPRMTSREINCDTKILSQSASS
                     MKSEVVCHGAMDGVGHSEINWTGNEHYMGSYNFKGTMHGQPNEMSTTYKGDWISADCG
                     AVKPFSAKAMPSTSPPPPR"
     gene            complement(781..1290)
                     /locus_tag="VNN98_08690"
     CDS             complement(781..1290)
                     /locus_tag="VNN98_08690"
                     /inference="COORDINATES: protein motif:HMM:NF023696.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3617 family protein"
                     /protein_id="HWM62218.1"
                     /translation="MRRTLLSILTLLLLATPQAWAAGKAGLWTITTIWQFGMPRVPPA
                     LVALARTQGLKPPVTGQPFIHHMCMTEYEADGSQPLHLNSRDLDCTNRVVSARRTQMV
                     LESICHGPLEGVARAQITWRGNQHFEGTSDFRGKFRGGPTRMSSSFTADWAGDDCRGV
                     RPYIPQNNN"
     gene            1389..2171
                     /locus_tag="VNN98_08695"
     CDS             1389..2171
                     /locus_tag="VNN98_08695"
                     /inference="COORDINATES: protein motif:HMM:NF012334.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HWM62219.1"
                     /translation="MSRPKALITGASTGIGKAYAQRLAKRGYDLVLVARDRTRLEALA
                     AELRSDGAASEVLVADLTQSAQVAQVEQKLEGDPAITFFLNNAGIATVEPQLKTSVET
                     IERLIALNVTAATRLALAAGRAFGARKSGTIVNMASAVAVNPERFNGVYSGSKAFLLA
                     LSQALTRELNANGVTIQTVLPGATRTEIWERAGADVDTVIPPERIMEVGELVDAALKG
                     LELGEHITIPSLPDAQDLADAEAARLKLGPNLSRDHPAARYL"
     gene            complement(2168..>3019)
                     /locus_tag="VNN98_08700"
     CDS             complement(2168..>3019)
                     /locus_tag="VNN98_08700"
                     /inference="COORDINATES: protein motif:HMM:NF016830.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA];
                     GO_process: GO:0008643 - carbohydrate transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate porin"
                     /protein_id="HWM62220.1"
                     /translation="LTLGKFSPTDIFDTNAYAHDPSHDFLNWAMIDAGPWDYAADAWG
                     YSYGGAVEWTVSDWTLRGGLFDLSRIPNGTELTRGFGQYQLDGEVERRFTLSGRDGSI
                     KLLGFASRGRLGDYNDAAALSLVTHKPADIIAVRRGAWKSGISLNLEQGLTDDLGAFA
                     RATLNDGSKEGDEFTDMADSISTGLSLNGESWSRKDDTAGLALESAGISKAAQRFFAA
                     GGLGILIGDGRLDHYNRENVVEAYYAAKLWTGIFATLDYQFIANPAYNADRGPASVLG
                     LRLHGEF"
BASE COUNT          554 a          953 c          949 g          563 t
ORIGIN      
        1 ccagcggatc ggagacataa tcctggaatt cgaccggcat catcttggtc cagatgccgc
       61 cgggtgagcg aaaatcgggg ataccggatt cggtggacat gcccgcgccg gtgaagatca
      121 cggcccggcg cgaaccgcgc agcagcgacg tcagcgccgc aatgtcatca ttcatctggg
      181 cggcggagga ctcgtagacg gcatggcctt tgccgagaag ggcttcacgg cgccgcaatc
      241 ggcgctgatc cagtcgccct tataggtggt gctcatctca ttgggctggc cgtgcatggt
      301 gcccttgaaa ttgtagctgc ccatataatg ctcgttgccc gtccagttga tttccgaatg
      361 gccgacgccg tccatcgcgc catggcacac cacttcggat ttcatcgagg acgcgctctg
      421 gctgaggatt ttggtatcgc aattgatctc gcggctggtc atgcgcggcg gcttgtcggc
      481 attgacctct tcggcggtca tgcacatctg gctggtgaaa ggctggcccg ccaccggcac
      541 attcatgccg cgcttcttca tcatctccgc cattcccggc ggcatcttcg gtgcgttcgc
      601 catctgcatg gtcgagggaa tggtccaaag acccggcttg ccgtgcgcgg ccaaagccgc
      661 gccgggcgcc aggatcaggg cggcggcgat cagtcccaat ttgcgattca tgtcattccc
      721 cacatttttt cccggcacca aatctgacac gaccgccgca cctgtcaatc tgggggccgc
      781 tcagttgttg ttctggggaa tataaggcct gacgccccgg caatcgtcgc ccgcccaatc
      841 ggcggtgaag ctgctgctca tgcgggtggg accgccccgg aatttccccc ggaaatcgga
      901 ggtgccttcg aaatgctgat tgccgcgcca ggtgatctgg gcgcgggcga cgccttccag
      961 cgggccatgg caaatgcttt ccagcaccat ctgcgtgcgc cgcgcgctga ccacgcggtt
     1021 ggtgcagtcc aaatcgcggc tgttgagatg cagcggctgg ctgccgtccg cctcatactc
     1081 ggtcatgcac atgtgatgga tgaagggctg gccggtcacc ggcggcttca ggccctgggt
     1141 tcgcgccagc gctaccagcg ccggcggaac acgcggcata ccgaactgcc aaatggtggt
     1201 gatggtccac aggcccgcct tgcccgcggc ccaggcctgg ggcgtcgcca gcagcaacag
     1261 ggtcaatata gaaagaaggg tgcggcgcat gatgctcttt caaaagttag aatctggcat
     1321 gggacacgcg gcttgaaaag cgccgttatc ggcataactc tccatcgcat tgctttaaca
     1381 ggatcatcat gtccagaccc aaggccctga tcactggcgc gtccaccggt atcggcaaag
     1441 cttacgccca gcggctggcc aagcgcggct atgatctggt gctggtggcg cgcgacagga
     1501 cgcggctgga ggcgctggcc gcggaattgc gcagcgatgg cgcggcgtct gaggtgcttg
     1561 tcgcggatct gacacaaagc gcccaagtag cgcaggtgga acagaagctg gaaggcgatc
     1621 ctgccatcac cttcttcctc aacaatgccg gcatcgccac ggtagaaccg caactcaaga
     1681 cttcggtgga gaccatcgaa aggctgatcg ccctcaacgt cacggcggcg acgcggctgg
     1741 cgctggcggc gggccgcgcc ttcggcgcca ggaaatcggg caccatcgtg aatatggcca
     1801 gcgcggtggc ggtcaatccc gagcgtttca acggcgtcta tagtggctcc aaggccttcc
     1861 tgctggcgct gtcccaggcg cttacccgcg aactgaacgc caatggcgtc accatccaga
     1921 ccgtgctgcc cggcgccacc cgcaccgaaa tatgggagcg cgccggcgca gatgtggaca
     1981 cggtcatacc gccggagcgg atcatggagg tgggcgagtt ggtggacgcg gcgctcaagg
     2041 gcctggagct tggtgagcac atcaccattc cctccctgcc cgatgcgcag gacctggcgg
     2101 acgcagaagc tgcgcggctg aagctgggtc ccaacctgtc gcgcgatcat ccggcggcgc
     2161 gttaccttta gaattcacca tgcaggcgca ggcccagcac cgacgcggga ccgcgatcgg
     2221 cgttataggc gggattggcg atgaactggt aatccagcgt ggcgaagatg ccggtccata
     2281 acttggcggc atagtaggcc tcgaccacat tttcgcgatt ataatgatcc agccgcccgt
     2341 cgccgatcag gatgcccaat ccacccgccg cgaagaagcg ctgcgccgct tttgaaatgc
     2401 ccgcgctctc cagggccagc ccggccgtgt catccttgcg gctccaggat tcgccgttta
     2461 aggacagtcc ggtggagatg ctgtcggcca tgtcggtgaa ctcatcgcct tccttgcttc
     2521 cgtcgttcag ggtggcgcgc gcaaatgcgc ccagatcatc cgtcagccct tgctccaggt
     2581 tcaacgagat gccggatttc caggcgccgc gccgcaccgc gatgatgtcg gcgggcttgt
     2641 gcgtgaccag cgacagcgcc gctgcgtcgt tatagtcgcc gaggcggccg cggctggcga
     2701 agcccagcag tttgatgctg ccgtcacgtc ccgacagcgt gaagcgccgc tccacctcgc
     2761 cgtccaactg gtattgcccg aagccgcgcg tcaattcggt gccgttggga atgcgcgaca
     2821 ggtcgaacag cccgccgcga agcgtccagt cggagacggt ccattccacc gcgccgccat
     2881 aactgtaacc ccaggcatcg gcggcatagt cccagggacc cgcatcgatc attgcccagt
     2941 tgaggaaatc gtgcgacgga tcgtgcgcat aagcattggt gtcgaaaata tcggtgggcg
     3001 agaatttccc caaggtcag
//
LOCUS       DATMDK010000454         2668 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2275276,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000454 DATMDK010000000
VERSION     DATMDK010000454.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2668)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2668)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2668
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2275276"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1169)
                     /locus_tag="VNN98_08705"
     CDS             complement(<1..1169)
                     /locus_tag="VNN98_08705"
                     /inference="COORDINATES: protein motif:HMM:NF019042.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porin"
                     /protein_id="HWM62221.1"
                     /translation="MRKSFASLLLAGTVLSAPAYAAAKKPAPPPPDPRISVLEQQLRD
                     VQQQLAEIKGSQGQNDYSAAVVDLKRSTSSQYADINNRFDAQTRVGLDNGRLTFASAN
                     GAFTLSLRSLIQFDYGYFAQGKNPTGVDLNSGSNFRRAQFGFVGTAWKDWSYNFTYDF
                     GGNGTEKNGYIYYAYLQYDGFGPLHIRGGAIAPFAGIEDATGSGDLLFLERPSVTDIA
                     RNVAGSPGREGIDVFVQGDTYLLSAAYTGKKTTDAATFDEQSAVVTRASWLPVSTSDV
                     KWLVDANLSHVFHLADTAPNAGANFFSFSNGPEVAVDASKTVNTGNIDAKRVTEFGFE
                     SAATYAGLYAQGGWFRFDVERRTAVPDPNFDGWYAALTYSLTGEEHQYDPTTASFR"
     gene            complement(1310..1744)
                     /locus_tag="VNN98_08710"
     CDS             complement(1310..1744)
                     /locus_tag="VNN98_08710"
                     /inference="COORDINATES: protein motif:HMM:NF014173.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Rrf2 family transcriptional regulator"
                     /protein_id="HWM62222.1"
                     /translation="MISQKARYALRALLFLAARGDSIPVQISEIAEREKIPRKFLEAI
                     LLELKKTGIVRSHRGRTGGYSLGKPAKDISFADVLRVTDGPLALSPCVSVMAYRKCDD
                     CFEESVCAIRKALLAARDATAQILESRNLAAAAAQLRRSGAL"
     gene            2022..>2668
                     /locus_tag="VNN98_08715"
     CDS             2022..>2668
                     /locus_tag="VNN98_08715"
                     /inference="COORDINATES: protein motif:HMM:NF013069.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HWM62223.1"
                     /translation="MTWLVKVALDRPYTFIVMALMILIFGPLAAIRTPTDIFPNIGIP
                     VVGVAFTYAGLSPDDMSSRIMTPYERILSTTVNDVEHVESQSMPGIGIAKIYFQPNVD
                     IRLATAQVTSVSQTAIRQMPAGSLPPLILNYSASTVPVLQMAFSSASLSEQQVLDLSQ
                     NFARPRLTTVQGAAVPYSYGGKFRAVQIDLDPSAMQARGLSATDVQNVFVNQNHI"
BASE COUNT          528 a          827 c          803 g          510 t
ORIGIN      
        1 cggaagctgg cggtggtagg atcgtattga tgctcctcgc cggtcagcga ataggtcagc
       61 gccgcgtacc agccatcgaa gttcggatcg ggcaccgcgg tgcgccgctc cacatcgaag
      121 cggaaccagc cgccctgagc atagaggccg gcataggtgg cagcggattc aaagccgaac
      181 tcggtcaccc gcttggcgtc gatattgccg gtgttgacgg tcttgctggc atccaccgcc
      241 acttccggtc cgttggagaa gctgaagaag ttggcgcccg cattgggcgc ggtatccgcc
      301 aggtggaaga catgggacag gttggcatcg accagccact tcacgtcgct ggtggacacg
      361 ggcaaccagg aggcgcgggt aaccaccgcg ctctgctcgt caaaggtggc agcatcggtg
      421 gtcttcttgc cggtataggc agccgacaga agataggtgt cgccctgcac gaaaacatct
      481 atgccctcgc ggccgggcga cccggcgacg ttgcgggcga tgtcggtgac gctgggccgt
      541 tccaggaaca gcaagtcacc agaaccggtg gcgtcctcga tgccggcgaa gggcgcgatc
      601 gcgccgccgc ggatatgcag cggcccaaag ccgtcatact gcagataggc gtaatagata
      661 tagccgttct tttcggtgcc gttgccgccg aagtcgtaag tgaaattgta cgaccagtct
      721 ttccaggccg tgccgacaaa gccgaactgg gcgcggcgga aattggagcc gctgttcaga
      781 tccacgccgg tagggttctt gccttgtgcg aaatagccat agtcgaactg gatcaggctg
      841 cgcagcgaca gggtgaaagc gccattggcg ctggcgaacg tcagccggcc attgtccagt
      901 ccgaccctgg tctgggcgtc gaagcggttg ttgatgtcgg catactggct ggacgtgctg
      961 cgcttcaggt ccaccaccgc ggcgctgtaa tcattctggc cctgcgatcc cttgatctcg
     1021 gccagctgct gctgcacgtc gcgcagctgc tgttccaata cgctgatgcg cggatcgggc
     1081 ggcggcggcg ccggcttttt tgctgccgcg taagcgggcg ctgaaagcac cgtgccggcc
     1141 agaagaagcg aagcaaaaga cttacgcatg caaaccccgt tgaaaatcat cccaccggcc
     1201 tttctgggcg gaccggacac gccattaatt cctctaaatc tctatctagt caatagggat
     1261 taagatattt ctgggaaccc aggaaatgac agcccaaatg caggggaaac tataaagcgc
     1321 ccgaacgccg caattgtgcc gcggcggccg ccaaatttct ggattccagg atttgggcgg
     1381 tggcgtcccg ggccgccagc agggccttgc ggatggcgca gaccgattcc tcgaaacagt
     1441 cgtcgcattt gcgataggcc atgacgctga cgcagggact gagcgccagt ggcccatcgg
     1501 tcacccgcag cacgtcggca aagcttatgt ccttggccgg cttgcccaag gaatagccac
     1561 ccgtgcggcc gcgatggctg cgcacgatgc cggtcttttt cagctccagc aggatggctt
     1621 ccaggaattt gcgcggaatc ttttcgcgtt ccgcaatttc ggagatttgg actggaatgc
     1681 tgtcgccgcg cgcagccaga aacagcaagg cgcgcaatgc atagcgggct ttctgggaga
     1741 tcataacggc aatataccct ataaacccta tggaatatag tctgccagta ccgtccgaga
     1801 gcctgcaatt gcgggacggt aaagccagct gcggcggaag gtgacaaact gttggggccg
     1861 cggcggcagc ggcgatgcga caggttgcga caaccccggc gatgcgcgct cccgatttcc
     1921 cggtataatc ctgataaatt accaacggcc ccgcccctgg cgccccgcaa acctgtcaaa
     1981 gactgtgcga tgactaagac aagattggac aggacaggcc gatgacctgg ctcgtcaagg
     2041 tcgcgctgga ccgaccctat accttcatcg tcatggcctt gatgatcctg atcttcgggc
     2101 ccctggcggc tatccgcacc cccaccgaca tctttcccaa tatcggtatt ccggtggtcg
     2161 gcgtcgcctt cacctatgcc ggcctgtcgc ccgacgacat gagctcgcgc atcatgacac
     2221 cctatgagcg catcctctcc accacggtca atgacgtgga gcatgtcgaa agccagtcca
     2281 tgcccggcat cggcatcgcc aagatttatt tccaacccaa tgtggatatc cgcctggcca
     2341 ccgcccaggt cacatcggtc tcccagaccg ccattcgcca gatgccggcg ggctccctgc
     2401 cgccattgat cctgaactac agcgcctcca ccgtgccggt gctgcagatg gccttttcct
     2461 ccgcctcgct gtccgagcag caggtgctgg acctgtcgca gaatttcgcc cgcccccgcc
     2521 tgaccacggt gcagggcgcc gcggtgccct attcctatgg cggcaagttc agggcggtgc
     2581 agatcgatct ggatcccagc gcgatgcagg cgcgcggcct gtcggccacc gatgtgcaga
     2641 acgtcttcgt caaccagaac catatcat
//
LOCUS       DATMDK010000455         3359 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_896723,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000455 DATMDK010000000
VERSION     DATMDK010000455.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3359)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3359)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3359
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_896723"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            208..1668
                     /locus_tag="VNN98_08720"
     CDS             208..1668
                     /locus_tag="VNN98_08720"
                     /inference="COORDINATES: protein motif:HMM:NF012371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase"
                     /protein_id="HWM62224.1"
                     /translation="MSIPAATQSGEPADGLKRAAPRSVGIDSAEVLAFLEEVEARGLE
                     LHSFMLHRNGAVAAEGWWWPYRPERSYIMHSLAKSFLACAVGLALDEDLLHLDDKVAS
                     FFPEYLPSKVDDRLAAMTVEDLLTMRSGHGEETSGAIWRGIGTSWISEFFNIPLVHPP
                     GTKFVYTSAASYMLSAILFKVTGQTLHAYLKPRLFDPLGISGETWDVGPDGINPGGNG
                     LSCKTADILKLGILHAQRGQWEGKRLLSEAWVLEATRGHDGNNYGYHWVTAPAGDYRA
                     IGLFVQMTMVFPKHGAVIAVTAGIDQSATLLPILYRHFPAAFKNGPITDAAADARLAD
                     RLESVASPQTIVSAPSPLPARISGLTYRTAANPRGITSMRFDFTASRCTFHLSDADGD
                     HAIEMGLNDFIETRASLPGRDLHHGYELKDALVVAGARWRDATTLEMTWIFAQSAFRD
                     TVICRFEGHDVTLDRKVNVNSKALSHPTLKGSAAGG"
     gene            1671..2726
                     /locus_tag="VNN98_08725"
     CDS             1671..2726
                     /locus_tag="VNN98_08725"
                     /inference="COORDINATES: protein motif:HMM:TIGR03243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine N-succinyltransferase"
                     /protein_id="HWM62225.1"
                     /translation="MPSSSQMPLPTRLVRPAAAHDLPQMIALIQSLGSGMTSMPNDAD
                     ALAAKIDRSDQSFAGRAKSDLQYVLVLEDEEGRLLGTSAVYPRIGDSHGFFSYKLTRL
                     VQRSKLLERRTDLELLTLNNDYTGATEVGSLAVAPSQRGAGAGRLMARARYMLIASFP
                     HLFAETVIAEMRGWQDEHSRSPFWDAIGARFFDLSFEEADRLSAVEGVGFIAELMPKH
                     PIYTALLPGAARAAIGKPHRESAKAMAMLLAEDFRYDGHVDVFDGGPQIYIARDKIRT
                     VMDSRPARVGRCGSERPAVSLLLSNSMLERFRVVEIQASVEDGTTILNDRTRRALDVQ
                     TGDMVRVAPGQRARAPA"
     gene            2754..>3359
                     /locus_tag="VNN98_08730"
     CDS             2754..>3359
                     /locus_tag="VNN98_08730"
                     /inference="COORDINATES: protein motif:HMM:NF016289.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HWM62226.1"
                     /translation="MRKSVLLAALLASAPAWAAQAVNSGLAPIGRLSPERTAFRAVYQ
                     ELVETDTTPASGDCSLAANRMAARLRTAGYPDSDLNLYVPPNLPKDGGLIAVLHGSDP
                     SAKPLLLMAHIDVVNVNRTEWKTDPFKLIEDKTYFHARGTTDDKAMAAVWVDGLIRLR
                     QEGFKPRRDIKLLLACGEESGGRIKDAQWLAANHRDWIDAGF"
BASE COUNT          632 a         1086 c         1039 g          602 t
ORIGIN      
        1 ctttcatgac ccacatatta cttgctgcca cgcatccagg cgcccaccac tcaggacggc
       61 aatgctcgaa ggacatcaca tatggttttt tgtgatgtta taatacaaaa tcattgacct
      121 gcacttcggt caaccgtatt caacatcttg gggtgaattt ggcgctgcaa cgtcccggcg
      181 gctcagcaac acaagatcat caggaaaatg agcattcccg ccgcaacaca gtccggggag
      241 ccggccgacg gcctgaagcg ggccgcgccg cgcagcgtgg ggatcgattc cgcagaggta
      301 ttggcgttct tggaagaggt tgaagcgcgc ggcctggagc tgcacagctt catgctgcat
      361 cgcaatggcg ccgttgcggc ggaaggctgg tggtggccct atcgtcccga gcggtcctac
      421 atcatgcact ccctggccaa gagctttctg gcctgcgccg tcggcctcgc tttggatgaa
      481 gacctgctcc atctggacga caaggtcgcc tccttcttcc cggaatattt gccgagcaag
      541 gtcgacgaca ggctggccgc catgacggtg gaggatctgc tcaccatgcg cagcggccat
      601 ggtgaggaaa cctccggcgc gatctggcgc gggatcggaa ccagctggat cagcgagttc
      661 ttcaatatcc cgctcgtcca tccgcccggc accaagttcg tctacaccag cgccgccagc
      721 tatatgctgt cggccatact cttcaaggtc acgggacaga cgctgcatgc ctatctgaaa
      781 ccgcgcctgt tcgatccgct cgggatcagc ggcgaaacct gggacgtggg accggacggc
      841 atcaatccgg gcggcaacgg cctcagctgc aagaccgcgg acattctcaa gcttggcatc
      901 ctgcacgccc agcgcggtca gtgggagggc aagcgcctcc tgtcggaagc ctgggtgctg
      961 gaagcgacgc gcggccatga cggcaacaat tacggctacc actgggtgac ggctccggcc
     1021 ggcgactatc gcgcaatcgg cctgttcgtg cagatgacca tggttttccc caagcacggc
     1081 gcggtgattg ccgtgacggc gggcatcgat caaagcgcga ccctcctgcc catcctctac
     1141 cggcactttc ccgccgcgtt caagaatggg ccgatcacgg atgcggcggc ggacgcgcgc
     1201 ttggcagaca gattggagag cgtggcgtcg ccccaaacaa tcgtttcggc gccgtcaccg
     1261 ctgccggcac ggatctccgg cctcacctac cggaccgcag ccaatccccg gggcatcaca
     1321 tccatgcggt tcgacttcac cgccagccgc tgcacctttc acctcagtga tgccgacggc
     1381 gaccatgcca ttgaaatggg cttgaacgat ttcatcgaaa cgcgtgcgtc cctgccgggg
     1441 cgtgacctgc atcacggcta tgagctgaag gatgccctgg tcgtggccgg cgcgcgctgg
     1501 cgcgatgcga cgaccctgga aatgacctgg atattcgccc agtccgcctt ccgcgacacc
     1561 gtcatttgcc gctttgaggg tcatgacgtc accttggacc gcaaggtcaa cgtcaattcc
     1621 aaggcgctca gccatcccac actcaagggt tcggcagcag gaggctgaaa gtgccgtcgt
     1681 cttcgcaaat gccgttgccg acgaggctgg tccgccccgc ggcggcgcat gatttgccgc
     1741 agatgatcgc gctgatccag tcgctgggca gcggcatgac ctcgatgccc aatgacgccg
     1801 acgccctggc cgccaagatc gaccgttccg atcagagctt cgcgggccgc gcgaagtcgg
     1861 acctgcaata tgtcctggta ctcgaggacg aagaagggcg cctgctgggc acgtcggcgg
     1921 tgtatccccg gatcggtgac agccacggct tcttctccta caagctgacg cgcctggtgc
     1981 agcgctccaa actgctggag cggcgcacgg atctggagct tctcaccctc aacaacgact
     2041 ataccggcgc gacggaagtg ggctcactgg cggtggcgcc ctcgcagcgc ggcgccggcg
     2101 ccggacgtct gatggcgcgg gcgcgctaca tgttgatcgc gtcctttccc catcttttcg
     2161 ccgaaaccgt gatagcggag atgcgcggtt ggcaggatga acattcccgc agtcccttct
     2221 gggacgcaat cggcgcgcgg tttttcgacc tgtccttcga ggaagccgac cggctgagcg
     2281 ccgtggaggg tgtgggcttt atcgcggaat tgatgcccaa gcatccgatc tatacggcgc
     2341 tgcttccggg tgcggcgcgc gcggcaatcg gaaaaccgca ccgcgaaagc gccaaggcga
     2401 tggcgatgct gctggcggag gatttccgct atgacggcca tgtcgatgtc tttgacggtg
     2461 gcccgcagat ctacatcgcg cgcgacaaga ttcgcacagt gatggacagc cgccccgcgc
     2521 gcgtcggcag gtgcggctct gaacggcccg ccgtctcgct gctgctgtcc aatagcatgc
     2581 tggaacgttt ccgggtcgtc gaaattcaag ccagtgtcga ggacgggacc accatcctca
     2641 atgaccggac gcggcgcgct ctcgacgtgc aaaccggaga catggtgcgc gtagcacccg
     2701 ggcagcgggc acgggcgccc gcctgacatc gcaccagaaa cggacagaag accatgcgca
     2761 aaagcgtcct tcttgcagca ctccttgcct ccgccccggc ctgggcagcc caggcggtga
     2821 acagcggcct ggcgccgatc ggcaggctga gccccgagcg gacggccttt cgcgccgtct
     2881 atcaggaact ggtggagacc gacacgaccc cggcctccgg cgattgcagc ctggctgcga
     2941 accgcatggc ggcgcggctc cgaacagccg gttaccccga cagcgatctc aatctttacg
     3001 tcccgccgaa cctccccaag gatggcggcc tgatcgcggt cctgcacggc agcgatcctt
     3061 cggcgaagcc actgctgttg atggctcata tcgatgtggt gaatgtgaac cggacggaat
     3121 ggaaaaccga tcccttcaag ctgatcgagg ataagactta ttttcatgcc cgcggcacca
     3181 ccgacgacaa agcgatggcg gcggtatggg tcgacggcct gatccggctg cgtcaggaag
     3241 gcttcaagcc gcgccgcgac atcaagctgc tgctggcctg cggggaagaa tccggcgggc
     3301 gcatcaagga cgcccaatgg cttgccgcca atcaccgcga ctggatagac gccggcttt
//
LOCUS       DATMDK010000456         2206 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_430375,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000456 DATMDK010000000
VERSION     DATMDK010000456.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2206)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2206)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2206
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_430375"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..215
                     /locus_tag="VNN98_08735"
     CDS             <1..215
                     /locus_tag="VNN98_08735"
                     /EC_number="3.5.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013228.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HWM62227.1"
                     /translation="EIKKNLENAGSSLQNCLKVTVFLADLKDYEAMNAVYRTYDWGSL
                     PPVRTTTAAAGIPGNSLIEIDVIAYI"
     gene            232..1809
                     /locus_tag="VNN98_08740"
     CDS             232..1809
                     /locus_tag="VNN98_08740"
                     /inference="COORDINATES: protein motif:HMM:NF013237.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0019346 - transsulfuration [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PLP-dependent transferase"
                     /protein_id="HWM62228.1"
                     /translation="MGLFGKWSRRDLLKSSGAVAGAIAPLAVASSPVMAQAMPAGSDK
                     DNLFTRIGVRPLINGRGTYTIISGSRSLPEVKQAMFEASHYYVQMDEMMNGIGAELGR
                     LMGAEWGIVTNGAESAICLATIACIAGANVEKCQALPYIKAKDQVIIPKYSRNPYDLG
                     VRMAGVEIVEVETAEELHAKISPRTAMIYVMSGPPAEKGPLSIAALCAVAKEKNIPIL
                     VDAAAEEPLNPNPHLSRGATLVCYSGGKCLRGPQSSGILLGDKSLCKAAYFQAAPHHC
                     YGRALKCSKEESMGLLAAVRQWYKRDHAGEQRMWRGWMQTIENQLKSLPSTSFEYLEP
                     EDLSNKATRLRVKWDANVLKITGSELVAKLDAGSPRILIDPGAGQRPGKMASSVVIMP
                     YMMDPGEDRIIADAIHAALTNPGHYDNPVVPAGTPAAIGGTWAVTIQYLRGQGEQKLT
                     LAQTGGTVSGLHQGELYSGKLKGEVHGDQVELRTVMEVPGNPIHWTFTGTVHGNAISG
                     AANMGEYGPASWTATRI"
     gene            1806..>2206
                     /locus_tag="VNN98_08745"
     CDS             1806..>2206
                     /locus_tag="VNN98_08745"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM62229.1"
                     /translation="MKPLLICSALALLTAGAAAEPLPAYDLLLHGGHVIDARNHIDAV
                     MDIAIKDGHVAKVVQSLSPADAIKTIDVRGMIVTPGLIDLHTHNYNGTGERGSYAGDL
                     SVLPDGFTFRTGVTTVIDAGCAGWRNFEDFK"
BASE COUNT          443 a          676 c          695 g          392 t
ORIGIN      
        1 atgaaatcaa aaagaatctg gaaaatgccg gctcctctct gcagaactgc ctcaaggtca
       61 cggtcttcct cgccgatcta aaggattatg aggccatgaa tgcggtgtat cgcacctatg
      121 attggggttc gctgccgccg gtgcgtacca ccacggccgc cgcaggcatc cccggcaatt
      181 cgctgatcga aatagacgtc atcgcctata tctaggcgcg ggtgagggag catgggcttg
      241 ttcggcaaat ggtcgcggcg cgacctgttg aagtcttcgg gcgcagtggc gggagcgata
      301 gcgccgttgg ccgtggcgtc ttcgccggtc atggcgcaag ccatgccggc cggcagcgac
      361 aaagacaatc tcttcacccg catcggggtc cggccgctga tcaatggccg gggcacctac
      421 accatcatca gcggctcgcg ctcgctgccg gaggtgaagc aggccatgtt cgaagcctcg
      481 cattattacg tccagatgga cgaaatgatg aacggtatcg gcgccgagtt gggcagattg
      541 atgggcgccg aatggggcat cgtcaccaac ggcgctgaat cggcgatctg cctggccacc
      601 atcgcctgca tcgcgggcgc caatgtcgaa aagtgccagg cgctgcctta catcaaggcc
      661 aaggaccagg tgatcatccc caaatattcg cgcaatccct atgacttggg ggtgcgcatg
      721 gccggggtgg agatcgtcga ggttgaaacg gcggaggagt tgcacgccaa aatatcgccc
      781 cgcaccgcca tgatctatgt catgtcgggg ccgccggccg agaaaggccc gctcagcatc
      841 gccgccctgt gcgccgtcgc caaggaaaag aacatcccca tcctggtcga tgctgcggcg
      901 gaggagccgc tcaatcccaa tccgcatctg tcgcgcggcg ccaccctggt ctgctattcc
      961 ggcggcaagt gcctgcgcgg gccgcaatct tcgggtattc tgctgggcga caagagcctg
     1021 tgcaaggcgg cctatttcca ggcggcgccg catcactgtt acggccgcgc cctgaaatgc
     1081 agcaaggaag agtccatggg tctgctggcg gcggtccggc aatggtacaa gcgcgaccat
     1141 gccggcgagc agcgcatgtg gcgcggctgg atgcagacca tcgagaacca gctgaagagc
     1201 ctaccgtcca ccagctttga atatctcgag cccgaggatc tttccaacaa ggccacgcgg
     1261 ctgcgtgtca aatgggacgc caatgtgctg aagatcaccg gctcggaact ggtcgccaag
     1321 ctggatgcgg gaagcccgcg cattctgatc gaccctggcg ccgggcagcg gcccggcaag
     1381 atggcaagtt cggtcgtcat catgccttac atgatggatc ccggtgagga ccgcattatc
     1441 gccgatgcca tccatgcggc gctgacaaat ccgggccatt acgacaaccc cgtggtgccg
     1501 gcgggcaccc ccgccgctat cggcgggacc tgggctgtta caatccagta tctgcgcgga
     1561 cagggcgaac agaaactcac gctggcgcag accggcggaa ctgtctccgg cctgcatcag
     1621 ggtgaactct atagcggcaa gctcaagggt gaggtccatg gcgatcaagt cgaactgcgg
     1681 accgtgatgg aagtgccggg caatcccatt cattggactt tcaccggcac cgtccatggc
     1741 aacgccatat cgggcgcggc gaacatgggt gaatatggtc ccgccagctg gacggcgacc
     1801 cgcatatgaa gccgctgctg atttgcagcg cgctggcgct gctgacagcg ggcgcggcgg
     1861 cagagccgct gcccgcttat gacctgctgc tgcacggcgg ccatgtcatc gatgcgagga
     1921 accacattga cgcggtgatg gacatcgcca tcaaggacgg ccatgtcgcc aaagtggtgc
     1981 aaagtctgtc accggccgac gccatcaaga ccatcgacgt gcgcgggatg attgtcacgc
     2041 ccggcctgat cgacctgcac actcacaatt acaacggcac gggcgagcgc ggctcctatg
     2101 ccggcgatct cagcgtgctg ccggacggct tcactttccg cactggggtc accaccgtga
     2161 tcgatgctgg ctgtgccggc tggcgcaatt tcgaggattt caagga
//
LOCUS       DATMDK010000457         4633 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2721841,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000457 DATMDK010000000
VERSION     DATMDK010000457.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 4633)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4633)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4633
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2721841"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..715)
                     /locus_tag="VNN98_08750"
     CDS             complement(<1..715)
                     /locus_tag="VNN98_08750"
                     /inference="COORDINATES: protein motif:HMM:NF019011.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M81 family metallopeptidase"
                     /protein_id="HWM62230.1"
                     /translation="MTRVFIAGIFHETHSFSGDTTGLDGFVIHRGGEILKRRGDASQV
                     DGFLSVAEREGWEVVPSVIYTGGASGTVDHAVFEQFWAEVKPALDKALAQGLDAIHLS
                     LHGAMVTSGCEDPEGELMLRIRATPGAVKLPVYCVGDLHATLTPKMGNFSDCMIFYRE
                     CPHTDAFDSAVLSSELLARCLKTGVRPKHFVLVTPIVWPPTGTGTRDGPMRALEDAAR
                     RMEKTIPGVLAVNIVGGYAF"
     gene            966..1721
                     /locus_tag="VNN98_08755"
     CDS             966..1721
                     /locus_tag="VNN98_08755"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM62231.1"
                     /translation="MLILKLTIVPLALLVFGIVERLHGPRVAGWLAGFPIVGGPLLVF
                     VTLDHGVQFGSQAALGAYFGLVPWLAFAMTYAFCCRTLGWLWCSIIGFAVWTVVAVIA
                     VMMQGASRWLELLPLAAFLTALFANPRGAASDEEREHVWWGLPARMVAGAGLTIVITQ
                     FAAAMGSRWAGIFATFPIMGSIICISSHLQYGRHAVQEAVAGMSMGLASVGTFCFAVY
                     LLLGMTGMWAAFGLALVISSSAHALTWLLFKKR"
     gene            complement(1733..3025)
                     /locus_tag="VNN98_08760"
     CDS             complement(1733..3025)
                     /locus_tag="VNN98_08760"
                     /inference="COORDINATES: protein motif:HMM:NF012428.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate aminotransferase family protein"
                     /protein_id="HWM62232.1"
                     /translation="MPLSFDRSAQLIAENAKHIAGGVNSNFRIGMAGGPLVFQRGEGA
                     YLIDADGNRLIDYYCGMGAMVLGHSPAGVQQAVKDQVDKGILYAGQSEIEFEAARILC
                     GRIPSAQRIRFGSSGSEVAQAAFRLARAATGRRIILKFEGHYHGWFDNILWSTAPAQN
                     AAGPQEAPILVPGSVGQDPIDAAGLDVIGWNDLARLEVRLAKGDVAGVIMEPAMCNQG
                     AIAPAPGYLEGALAACRKHGSILIFDEVITGFRLGRSGAQARFGVTPDLSIFAKAIAN
                     GFPVAAIVGRADLLDMFVTGGVLHGGTFNSQPVTMAAMVATQLALTPEHYEISSKRGV
                     RLRDGIAGILKDTGIKAQVTGFELMFHVGFGLDAPARNYRDLLQSDKALYVKFAHALL
                     KRGVRVLERGAWFVSSAHDDGVIDATLEAVRGAAKEIK"
     gene            3144..4331
                     /locus_tag="VNN98_08765"
     CDS             3144..4331
                     /locus_tag="VNN98_08765"
                     /inference="COORDINATES: protein motif:HMM:NF012371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase"
                     /protein_id="HWM62233.1"
                     /translation="MRHLSIALLGLLSVSPVFAADYFPPKGEAWATRTPAQEKLDAAK
                     LKAAIDFAVSAELTYPPELAKVADIRDLRISVPLKYAGEAFSTPIGPLKAHAPANGII
                     IRHGYIVAEWGKTHDVDMTFSVTKTFLSSVAGVAFDKGMIKSVGDRVIDYVQPTPDFL
                     LPHNQPITWDNMLRQDSGWIGTMWGKPWWADRPEAGKPWSELAKGPPPVGTAWKYNDV
                     RVNALALALTHLWKRPLPDVLKQYVADPIGMSDAWHWEGYDNSFTEIDGKRIHVVSGG
                     GHWGGGMYISARDQARLGLLGLNKGKWDGKTILSDKWVAMARTPTGPNPGYGFCNWYL
                     NTGKKLYPAAREDSLSYNGDGANIIFVDYQHDMVAVVRWIDGTKMKEFVRLLVDATGE
                     PAP"
     gene            complement(4335..>4633)
                     /locus_tag="VNN98_08770"
     CDS             complement(4335..>4633)
                     /locus_tag="VNN98_08770"
                     /inference="COORDINATES: protein motif:HMM:NF014717.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HWM62234.1"
                     /translation="RRTKEIGIRKAMGASSHDIVRLLLWQFLKPVLWAALIALPLAWW
                     LMQRWLSGYAYHIALGPLPFLGAAALAAIIALVTVIAHAILTARAVPATALRYE"
BASE COUNT          847 a         1499 c         1441 g          846 t
ORIGIN      
        1 aaaaagcata accgccgaca atgttcaccg ccagcacacc gggaatggtc ttttccatcc
       61 gccgcgccgc atcttccagc gcccgcatcg ggccatcgcg ggtgccggtg ccggtgggcg
      121 gccacacgat cggtgtcacc agcacgaaat gtttcggccg cacgccggtc ttgaggcaac
      181 gcgccagcag ctcgctcgat aataccgcgc tgtcgaaggc gtcggtgtgc gggcactcgc
      241 ggtagaagat catgcagtcc gaaaagttgc ccatcttggg cgtcaaggtg gcgtgcaggt
      301 ccccgacgca atagaccggc agtttcacag cgcccggcgt ggcgcggatg cgcaacatca
      361 gctcgccttc cggatcctcg cacccgctgg tgaccatggc gccatgcagc gacagatgga
      421 tggcatccag cccctgcgcc agcgccttgt ccagcgccgg cttcacctcg gcccagaact
      481 gctcgaacac ggcatggtcc accgtgccgg aggcgccgcc ggtgtagatc acgctgggca
      541 ccacctccca gccttcgcgc tcggccaccg aaagaaaacc gtccacctgc gaggcatcgc
      601 cccggcgctt caggatttcc ccgccgcgat ggatgacaaa gccgtccagg ccggtggtgt
      661 cgccagaaaa agaatgggtt tcgtgaaaaa tccccgcaat gaaaaccctg gtcatgccgc
      721 accctttacc cggacaaact ttcggcggtt ttgcccgtcc ccgcaagcgt ttctgcgctg
      781 cacccctccc ccgcgagcga agcgaccggc gggggaggtg gcgtagcagc gcctgcgctg
      841 cgaagccgga gggggtaaat cagaccgatg cgcttataag atcatggcac taacccgttg
      901 tggcaccgtg cgcgcattgg cgcaggagaa ttttttcgtc accatggcgc aagcggggag
      961 ctgatttgct gatcctgaaa ttgaccattg tgccgctggc gttgctggtg ttcggcatcg
     1021 tcgagcggtt gcacgggccg cgcgtagcag gctggctggc aggtttccca atcgtgggcg
     1081 ggcctctgct ggtgtttgtc accctggatc atggcgttca gttcggcagc caggcagcgc
     1141 tgggcgctta tttcgggctg gtgccgtggc tggcctttgc catgacttat gccttctgtt
     1201 gccggaccct gggctggttg tggtgcagca tcatcggttt cgcggtctgg acggtggtgg
     1261 ccgtgatcgc cgtgatgatg cagggcgcct cgcgctggct ggaactattg ccgctggccg
     1321 cgttcctgac ggcgctgttc gccaatccgc gcggtgcggc atcggatgag gagcgcgagc
     1381 atgtctggtg gggtctgcct gcgcgcatgg tggcgggcgc cggcctgacc atcgtgatca
     1441 cccagtttgc cgccgccatg ggcagccgct gggcgggcat cttcgccact tttccgatta
     1501 tgggctcgat catctgcatt tccagccact tgcaatatgg ccgccatgcg gtgcaggagg
     1561 cggtggccgg catgtccatg ggcctggcat cggtggggac cttttgtttt gccgtctatc
     1621 tgctcttggg catgaccggg atgtgggcgg ccttcggtct ggcgctggtg atttcctcca
     1681 gtgcccatgc cctcacctgg ctgctgttca agaagcgcta ggaaatctcc ggttatttta
     1741 tttctttggc cgcgccgcgc accgcttcca aggtcgcgtc gatcacgcca tcgtcatgcg
     1801 cggacgacac gaaccaagcg ccgcgttcca gcactcgcac gccgcgcttc aagagggcat
     1861 gggcgaactt cacatacagt gccttgtcgg attgcagaag gtcgcgataa ttgcgcgccg
     1921 gcgcgtccag gccgaaaccg acatggaaca tcagttcaaa gccggtgacc tgggccttga
     1981 tgcccgtgtc tttcaaaatg cccgcgatac catcgcgcag ccgcacgccc cgcttggacg
     2041 aaatttcata atgttccgga gtcaacgcca gttgcgtcgc caccatcgcc gccatggtca
     2101 cgggctggga attgaatgtg ccgccatgca gcaccccgcc ggtgacgaac atgtccagca
     2161 gatcggcgcg gcccacgatc gccgccaccg gaaagccgtt ggcgatggcc ttggcgaaaa
     2221 tggacagatc gggcgtaacc ccgaaacgcg cctgcgcccc gctgcgtccc aggcggaacc
     2281 cagtgatcac ttcgtcaaat atcagaatgc tgccatgctt gcggcaggcc gccagcgcgc
     2341 cttcgagata gccgggcgca ggcgcaatgg cgccctggtt gcacatggcg ggctccatga
     2401 tcacgcccgc gacatcgccc ttggccagcc gcacttccag ccgcgcgaga tcgttccagc
     2461 cgatcacatc caatccggcg gcatcaatcg ggtcctgccc cacactgccc ggcaccagta
     2521 tgggcgcctc ttgcggcccc gccgcattct gcgccggggc ggtggaccag aggatattgt
     2581 cgaaccagcc gtgataatgg ccttcgaatt tcaggatgat gcggcgcccc gtggcggcgc
     2641 gcgccaggcg gaacgccgcc tgcgccactt ccgaaccgga ggagccgaaa cggatgcgct
     2701 gcgccgacgg aatccgcccg cacagaatcc tggcagcttc aaactcgatc tccgactggc
     2761 ccgcgtacag aatgccctta tcgacctggt ccttgaccgc ctgctgcacg cccgctggcg
     2821 aatggcccag caccatcgca cccatgccgc agtaatagtc gatcagcctg ttgccatcgg
     2881 catcgatcag ataggcgccc tcgccgcgct ggaacaccag cgggccgccc gccatgccga
     2941 tgcggaaatt gctgttgacc ccgcccgcga tatgtttcgc gttttccgcg atcaattgcg
     3001 cggagcgatc gaaagacaat ggcatgaacg atcccctgga ggcttttatt atggggccgt
     3061 tttagcccat ttgcggccgg gaaggcggga aaattgacaa aagctcaccg cccccggaag
     3121 ctcggaaaaa agggcgaaaa accatgcgac atctttctat cgcgctgctg ggcctgctca
     3181 gcgtctcccc cgtcttcgct gccgattatt tcccgcccaa gggcgaggct tgggccaccc
     3241 gcaccccggc gcaggaaaaa ctggacgccg ccaagctgaa ggcggcaatc gatttcgccg
     3301 tctccgccga actgacctat ccgccggagc tggccaaggt ggccgacatt cgcgacctgc
     3361 gtatttcggt gccgctgaaa tatgccggcg aagctttctc cacccccatc ggcccgctca
     3421 aagcgcacgc ccccgccaac ggcatcatca tccgccacgg ctatatcgtg gccgaatggg
     3481 gcaagaccca tgacgtggac atgacttttt ccgtgaccaa gacgtttttg tcatcggtcg
     3541 cgggcgtggc tttcgacaag ggcatgatca aaagcgtggg tgaccgggtg atcgactatg
     3601 tgcagccgac acccgacttc ctgctgccgc acaatcagcc catcacctgg gacaatatgc
     3661 tgcgccaaga ttcaggctgg atcggcacca tgtggggcaa gccctggtgg gcggaccggc
     3721 ccgaagccgg caagccgtgg agcgagctgg ccaagggccc gccgccggtg ggcaccgcct
     3781 ggaaatataa cgacgtgcgg gtgaacgcgc tggcgctggc cctgacccat ttgtggaagc
     3841 ggccgctgcc cgacgtgctc aagcaatatg tggccgatcc catcggcatg tcggatgcgt
     3901 ggcactggga aggctatgac aattcattta cggaaatcga cggcaagcgc atccatgtgg
     3961 tgagcggcgg cggccattgg ggcggcggca tgtatatctc ggcgcgcgac caagcgcggc
     4021 tgggcctttt gggcctcaac aaaggcaagt gggacggcaa aaccattctg tccgataaat
     4081 gggtggcgat ggcgcgcacc cccaccggcc ccaatcccgg ctatggcttc tgcaactggt
     4141 atctcaacac cggcaagaaa ctctatccgg cagcgcgcga ggacagcctt tcctacaacg
     4201 gcgacggcgc caacatcatc ttcgtcgact atcagcacga catggtggcg gtggtgcgct
     4261 ggatcgacgg caccaagatg aaggagttcg tccgcctgct ggtggacgcc accggcgagc
     4321 cggcgccgta atcgctattc gtaacgcagg gcggtggcgg gcacggcccg ggcggtcagg
     4381 attgcgtggg cgataaccgt gaccagcgcg atgatcgcag ccagggccgc cgcgcccagg
     4441 aacggcaacg gccccagtgc gatgtgatag gcatagcccg atagccatcg ctgcatcagc
     4501 caccaggcca gcggcagggc gatcagcgcc gcccatagca cgggcttgag gaactgccac
     4561 aacagaagcc gtacaatgtc gtggctggag gcgcccatcg ccttgcggat gccgatctcc
     4621 ttggtgcggc gct
//
LOCUS       DATMDK010000458         3880 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_900113,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000458 DATMDK010000000
VERSION     DATMDK010000458.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3880)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3880)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3880
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_900113"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..636
                     /locus_tag="VNN98_08775"
     CDS             <1..636
                     /locus_tag="VNN98_08775"
                     /inference="COORDINATES: protein motif:HMM:NF012692.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ROK family protein"
                     /protein_id="HWM62235.1"
                     /translation="RLDLEAVLARPVRLANDANCFALSEASDGAAAGAGTVFGVIAGT
                     GVGGGVVVDGKVLGGAHGIGGEWGHIPLPAPSVEEVTTAPLCYCGKRGCLEVWCSGPG
                     LAADFKRATGRDTTAEEIAASGGAEERAAMDRLIDRFARAMATLVNILDPDVIVLGGG
                     LSNIERLYRDLPPLVEKYGFNLGGPPRIVKNKHGDSSGVRGSAWLWPETDV"
     gene            629..1903
                     /locus_tag="VNN98_08780"
     CDS             629..1903
                     /locus_tag="VNN98_08780"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: protein motif:HMM:NF002751.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003684 - damaged DNA binding [Evidence
                     IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase IV"
                     /protein_id="HWM62236.1"
                     /translation="MFDAWPAFCRECLSDAKADAPCPNCGSTRVVAHPELETLAIAHL
                     DCDAFYAAIEKRDDPSLKDKPLIVGGETRGVVSTCCYIARTFGVRSAMPMFQAKKLCP
                     QAVIVKPRHSHYSQVARQIRTMMEELTPLVEPLSLDEAYLDLSGTQRIHHRSPARTMA
                     ALAARIEREIAITVSIGLSGNKFLAKLASELDKPRGFAVIGLAEAKSFLRDKKIGLMR
                     GAGKVMQARLERDGITTIGQLQDADPKQLANRYGATGLWLHRMANAQDSRRVDPGGEM
                     KTISSETTFNSDLSRLADLESVLWRQAERVSYRAKQYGLGGRTVVLKLKTADFRLKTR
                     SASLEAPTQLADRIFRLAQAALKREADGTRFRLLGVGLSNLAPAAEADPGSLIDPQSD
                     KRAAAERAMDKIRAKFGGEAVGKGRAFKKPRG"
     gene            1952..2416
                     /locus_tag="VNN98_08785"
     CDS             1952..2416
                     /locus_tag="VNN98_08785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017977474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HWM62237.1"
                     /translation="MSVIEARLETLGVTLPTPPMPVASYVPYAISGNLVFLSGQIPIA
                     DGALKYVGKLGVDIPLEAGQAAAQLCAINLLAQLKNACDGDLDRVVRCLRVGVFVNAA
                     PEYGQHPEVANGASDLIAAVFGDAGKHARAAVGVGSLPRGVAVEVDAIFEIK"
     gene            2413..3555
                     /locus_tag="VNN98_08790"
     CDS             2413..3555
                     /locus_tag="VNN98_08790"
                     /inference="COORDINATES: protein motif:HMM:NF016242.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HWM62238.1"
                     /translation="MTAKDSARLITSAAEIGAARWNGLANPQGLAEPHPFMTYEFFAA
                     LEESGSASRETGWQAAHLLTPDGLMPLYLKSHSYGEYVFDQAWAEALERVGGDYYPKL
                     QAAVPFTPVTGRRLLTANDKARETLLKTAAAAVKQIGASSLHITFLTQEEWQAAGRCG
                     YLQRTGQQFHWENRGYKNFDEFLRDLSSAKRKTLRKERASVRDAGVTFDWLTGADITE
                     SHWDQFFDFYRDTGSRKWGTPYLTREFFSRLGQSLSHQTLLIMAKQDGRAIAGALNLF
                     GEGVLFGRNWGAAAYVPFLHFEACYYQAIDFAIACGLKRVEAGAQGEHKLLRGYLPVQ
                     TYSAHLIAHKGLARAVDDFLDAERAAVAENIADLARHAPFKKNRPD"
     gene            complement(3560..>3880)
                     /locus_tag="VNN98_08795"
     CDS             complement(3560..>3880)
                     /locus_tag="VNN98_08795"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM62239.1"
                     /translation="QDDEASLSKDAANKGVVLDIETINWMFVYFPFDWSHYRVTVVAR
                     ARLIDANTGKRIAQAPCQYQSEEKTPPTYDQMLDNKAALLKSMLEAAADSCADKMAKS
                     LYAE"
BASE COUNT          703 a         1218 c         1261 g          698 t
ORIGIN      
        1 cggctggacc tggaggcggt gttggcgcgg ccggtgcggc tggccaatga cgccaattgc
       61 tttgccctgt cggaagccag cgacggcgcc gcagcgggcg cgggcacggt gttcggcgtc
      121 atcgccggca ccggtgtggg cggcggcgtg gtggtggacg gcaaggtgct gggcggcgcc
      181 cacggcatcg gcggcgaatg gggccacatt cccctgcccg cgccttcggt cgaagaagtg
      241 accaccgcgc cactctgcta ctgcggcaag cgcggctgcc tggaagtatg gtgcagcggt
      301 ccaggactcg cggctgattt caaacgcgcc accgggcgcg acacgacggc ggaagaaatc
      361 gcggcatcgg gcggcgcgga ggagcgcgcg gcgatggacc ggctgatcga ccgcttcgcc
      421 cgcgccatgg cgactttggt caacattctc gaccccgatg tgatcgtgct gggcggcggg
      481 ctttccaata tcgagcggct gtaccgcgac ctgccgccgc tggtggaaaa atacggtttc
      541 aacctgggtg ggccgccgcg catcgtgaaa aataagcacg gagattcgag cggcgttcgc
      601 ggatctgcgt ggctgtggcc ggaaacggat gtttgacgct tggcccgcct tctgccgtga
      661 atgcctgagt gatgcgaagg cggacgcacc ctgccccaac tgcggttcaa cccgcgtggt
      721 ggcccatccc gagctcgaaa ccttggccat cgcgcatctg gattgcgacg ccttttatgc
      781 cgccatcgaa aagcgcgacg atccttcgct gaaggacaag ccgctgatcg tgggcggcga
      841 aacccgtggc gtggtctcga cctgctgcta tatcgcgcgc acctttggcg tgcgctccgc
      901 catgcccatg tttcaggcca aaaagctttg ccctcaggcg gtgatcgtca agccgcgcca
      961 ttcccattac agccaggtgg cgcggcagat ccgcaccatg atggaagagc tgacaccgct
     1021 ggtggaaccg ctgtcgctgg atgaagccta tctcgatttg tcgggcaccc agcgcatcca
     1081 tcatcgcagc ccggcccgga ccatggcggc gctggcggcg cgcatcgagc gcgagatcgc
     1141 catcaccgtt tccatcggcc tgtcgggcaa caagttcctg gctaagctgg catccgaatt
     1201 ggacaagccg cgcggttttg ccgtgatcgg cctggcggaa gccaaatcct tcctgcgcga
     1261 caagaagatc gggctgatgc gcggcgcggg caaggtgatg caggcgcggc tggaacgcga
     1321 cggcatcacc accatcggcc agttgcagga tgccgatccc aagcagctgg cgaaccgtta
     1381 cggcgccacc ggactgtggc tgcaccgcat ggccaatgcg caggattccc gccgtgtcga
     1441 tcccggtggc gaaatgaaga ccatctcatc ggaaaccacc ttcaacagcg acctgtcgcg
     1501 gctggcggac ctggaaagcg tgctgtggcg tcaggccgaa cgggtctcgt atcgcgccaa
     1561 gcaatatggc ttgggcgggc gcacggtggt gctgaagctc aagaccgccg atttccgcct
     1621 caagacccgc agcgcctcgc tggaggcgcc cacccaactg gccgaccgca tcttccgcct
     1681 cgcccaagcc gccctgaagc gcgaggccga cggcacccgc tttcgcctgt tgggtgtggg
     1741 gctttccaat cttgcgcccg ccgccgaggc cgaccccggc agcctgatcg atccgcaatc
     1801 cgacaagcgg gcggcggcgg agcgggcgat ggacaagatc cgcgccaaat tcggcggtga
     1861 agcggtcgga aagggccgcg ctttcaaaaa gccgcgcggc tgagtaggct tggcgcctcc
     1921 caacagaggc cctctttcct aggattaaag tatgtctgtc atcgaagccc gtctggaaac
     1981 ccttggcgtc accctgccca cgccgcccat gcccgtcgcc tcctatgtgc cctatgccat
     2041 cagcggcaat ctggtgttcc tgtccggcca gatccccatt gccgatggcg ccttgaaata
     2101 tgtcggcaag ctgggcgtgg acattccgct ggaggcgggc caggccgcgg cgcagctttg
     2161 cgccatcaat ctgctggcgc agctgaagaa tgcctgcgac ggcgatctgg accgggtggt
     2221 gcgctgcctg cgggtgggcg tattcgtcaa cgccgcgccg gaatatggcc agcatcccga
     2281 agtcgccaat ggcgccagcg acctgatcgc agcggtgttc ggcgacgccg gcaagcatgc
     2341 ccgcgccgcg gtgggcgtgg gctcgctgcc gcgcggcgtg gcggtggaag tggacgccat
     2401 tttcgagatc aagtgacggc caaagactct gcacgactta taaccagtgc cgcggaaatc
     2461 ggcgcggcgc gttggaatgg cttggccaac ccgcaaggcc tggccgagcc gcaccctttc
     2521 atgacctatg agttcttcgc cgcgctggaa gagtccggct cggcctcgcg cgagaccggc
     2581 tggcaggcgg cgcatctgct gacgccggac gggttgatgc cactttatct gaaaagccat
     2641 tcctatggcg aatatgtctt cgaccaggcc tgggccgagg cgctggaacg ggtgggcggg
     2701 gattattacc ccaagttgca ggcagcggtg cccttcacgc cggtgacggg ccggcgactg
     2761 ctgactgcca acgacaaggc gcgcgaaaca ttgctgaaga cggcagcggc agcggtcaag
     2821 cagatcggcg cctcgtcgct gcacatcacc tttctcaccc aggaagaatg gcaggcggcg
     2881 ggccggtgcg gttacctgca gcgcacggga cagcaatttc attgggaaaa tcgcggctac
     2941 aaaaatttcg acgagtttct gagagatttg tcgtcggcta agcgcaagac cctgcgcaag
     3001 gaacgcgcca gtgtgcgcga tgccggggtg acattcgact ggctgaccgg cgccgacatc
     3061 acggaaagcc attgggatca gttcttcgat ttctataggg acacgggcag ccgcaaatgg
     3121 ggcacaccct atctcacccg cgaattcttc tcccgcctgg gccaaagcct gtcgcaccag
     3181 accctgctga tcatggccaa gcaggatggc cgcgccatcg ccggcgccct gaaccttttc
     3241 ggcgaaggcg tgctgttcgg ccgcaactgg ggggcggcgg cctatgtacc cttcctgcat
     3301 tttgaggcct gctattacca ggcgatcgat tttgccatcg cgtgcgggct gaaaagagtt
     3361 gaggccggcg cgcaagggga acataaattg ctgcgcggct atctgccggt ccagacctac
     3421 agtgcccatc tgatcgccca taaaggcctg gcgcgggcgg tggatgattt cctggacgcc
     3481 gagcgcgcgg cagtggcgga gaacattgca gacttggcgc ggcatgcgcc gttcaagaag
     3541 aaccgcccgg actgaaccgt tattccgcgt aaagcgattt cgccatcttg tcggcacaac
     3601 tgtcagccgc cgcttccagc atgcttttca acagcgccgc cttgttatca agcatctgat
     3661 cataggtcgg cggtgtcttc tcctcggatt gatactggca tggtgcctgg gcgatgcgct
     3721 tgccggtgtt agcatcaatc aagcgcgccc gtgccacgac cgtgacacga taatgcgacc
     3781 agtcgaaagg aaaatagacg aacatccagt tgatggtttc gatgtccagc acgacgccct
     3841 tattggcggc gtccttggac aagcttgcct cgtcgtcctg
//
LOCUS       DATMDK010000459         3300 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1594210,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000459 DATMDK010000000
VERSION     DATMDK010000459.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3300)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3300)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3300
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1594210"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..445)
                     /locus_tag="VNN98_08800"
     CDS             complement(<1..445)
                     /locus_tag="VNN98_08800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020045053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GatB/YqeY domain-containing protein"
                     /protein_id="HWM62240.1"
                     /translation="MSLRAQLTDAMKEAMKAKDAKRLSTVRLMLAALKDRDIAARSET
                     NKELVGDDDILTLLAKMIKQREESATAFDAGNRPELAANERDEIAIIRTFMPAQMDDA
                     AMQAAVAKTIAEVCAASIKDMGKVMAVLKERYAGQMDLIEAAQTSA"
     gene            659..1774
                     /gene="carA"
                     /locus_tag="VNN98_08805"
     CDS             659..1774
                     /gene="carA"
                     /locus_tag="VNN98_08805"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020045054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005951 - carbamoyl-phosphate synthase
                     complex [Evidence IEA];
                     GO_function: GO:0004088 - carbamoyl-phosphate synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0009220 - pyrimidine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing carbamoyl-phosphate
                     synthase small subunit"
                     /protein_id="HWM62241.1"
                     /translation="MLADGTFFEGTGFGAAGSAIGEVCFNTAMTGYQEILSDPSYAGQ
                     IVAFTFPHIGIVGTNAEDIETVTPAVRGLIVRADAQHPSNYRNLLALDGWLKKHHIPA
                     VAGIDTRALTSLIREKGMPHGVVVNLGDSELDRETLIKQAKSFAGLEGLDLAKDVTAR
                     QMYKWSEMPWAWGEGYKQEGTPTFRVTVIDYGVKRNILRLLTGMGADITVVPASASTE
                     DVMRHKPHGVLLSNGPGDPAATGAYAIPTIKGVIDSGVPVFGICLGHQMLGLTLGAKT
                     KKMAQGHHGANHPVKDLATGKVEIVSMNHGFTVDRDTLPAGVSETHVSLFDQTNCGLR
                     LDGKDVFGVQYHPEASPGPMDSHYLFERFAEAAKKRA"
     gene            complement(1897..2526)
                     /locus_tag="VNN98_08810"
     CDS             complement(1897..2526)
                     /locus_tag="VNN98_08810"
                     /inference="COORDINATES: protein motif:HMM:NF027558.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4893 domain-containing protein"
                     /protein_id="HWM62242.1"
                     /translation="MARSIPMGVRTSRISLALALSLGAVSISSGAFAGWQDQASPADI
                     DRLAQLPQIRDAAIADAQHGDGRGDWHAIPRVMQPQGRAVPANALVGDWHCRQIKLGR
                     MTSYMVYDRWFSCNIRPFNGGLLLQKMNGSQRFVGFLFPENGAWVYLGASSARGEPYH
                     NYSGRSPALGAQVTPDDQIGLLTGIGDNHMRLEMPAVQESLLDVVEFAR"
     gene            complement(2489..3298)
                     /locus_tag="VNN98_08815"
     CDS             complement(2489..3298)
                     /locus_tag="VNN98_08815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008036104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HWM62243.1"
                     /translation="MGVANDHSIAWGIAQMLASQGAEIAFTYQGEAQKKRLGPLAQSI
                     GSAIVLPADVEKDEELDAVFAHLAKQWGAIDFLVHAIAFSDRDELKGRYVDTSRANFA
                     RSLDISCYSFTAVAQRAAKLMSQGGSLVTLTYLGAQRVMPNYNVMGVAKAALEASVRY
                     LAADLGKDGIRVNAISAGPMRTLAGAAVGDARMVFKWNKSHSPLKKTVDLNHVGGAAL
                     YLLSDLAGGVTGEVHFVDAGFNVIGMPPTADLKGWTPLENGQEHPDGRADK"
BASE COUNT          620 a         1035 c         1046 g          599 t
ORIGIN      
        1 ttgccgaggt ctgcgcagcc tcgatcaagt ccatctggcc ggcatagcgc tctttcagaa
       61 ccgccatcac tttgcccatg tccttgatcg aggctgcgca gacctcggca atggtcttag
      121 ccaccgccgc ctgcatcgcc gcatcgtcca tctgggcggg catgaaggtg cggatgatgg
      181 cgatctcgtc gcgctcattg gcggccagtt cggggcggtt gccggcatcg aaggcggtgg
      241 cggattcttc gcgctgcttg atcatcttgg ccagcaaagt gaggatgtcg tcatccccca
      301 ccagttcctt gttggtttcg ctacgggcgg cgatgtcgcg gtccttcagc gccgccagca
      361 tcaggcgcac cgtggacagg cgcttggcgt ccttggcctt catcgcctct ttcatggcgt
      421 cggtcagttg ggcgcgcagg gacatgggat tctctctttt tcgtgggcgg cgaacctagc
      481 gggaatcggt ggataattcc aacccgttga aatcccaaga taagttctgg ttgacgcgcg
      541 gggcccgcct acctattttc gcgcaaatcc gaggcttccc atgaccgacg catcttccgc
      601 ccactccgcc cccgcggaga aggtattttc gcgcgccccc ttttccaaag gaggcttaat
      661 gttggcggac ggcaccttct ttgaaggcac cggcttcggc gcggccggca gcgccatcgg
      721 cgaagtctgc tttaacactg ccatgaccgg ctatcaggag atcctgtccg atccttctta
      781 tgccgggcag atcgtggcct tcacctttcc ccatatcggc atcgtcggca ccaatgccga
      841 agacatcgag acggtgaccc cggcggtgcg cggcctgatc gtgcgcgccg atgcgcagca
      901 tccttccaac tatcgcaacc tgctggcgct ggacggctgg ctgaagaagc accacatccc
      961 ggcggtggcg gggatcgaca cccgcgcctt gacgtcgctg atccgcgaaa aaggcatgcc
     1021 gcatggcgtg gtagtaaatt taggcgacag cgaactggat cgcgaaacac tgatcaagca
     1081 ggccaaatct ttcgcgggcc tggaaggttt ggatctggcc aaggatgtta ccgcgcgcca
     1141 gatgtacaag tggagtgaaa tgccctgggc ttggggcgaa ggctacaagc aggaaggcac
     1201 gcccaccttc cgcgtcaccg tgatcgatta tggcgtgaag cggaacattt tgcgcctgct
     1261 gacgggcatg ggcgccgaca tcaccgtggt gccggccagc gccagcaccg aagacgtcat
     1321 gcgccacaag ccgcatggcg tgctgctgtc caacggcccc ggcgatccgg cggcgacggg
     1381 cgcctatgcc attcccacca tcaagggcgt gatcgacagc ggcgtgccgg tgttcggcat
     1441 ctgcctgggc catcagatgc tgggcctgac gctgggcgcg aagaccaaaa agatggccca
     1501 gggccatcac ggcgccaatc atccggtcaa agacctcgcc accggcaagg tcgagatcgt
     1561 gtcgatgaac cacggcttca cggtggaccg cgacaccttg cccgcgggtg tgagcgagac
     1621 gcatgtgtcg ctattcgacc agaccaattg cggtttacgg ctggacggca aggatgtgtt
     1681 cggcgtgcag tatcaccccg aggcttcgcc cgggccgatg gattcgcact atctgttcga
     1741 gcggtttgcg gaagccgcga agaagcgggc ctagccccct caccctcgcg cgtgcaagca
     1801 cgcgctcttc cctctccccc ctagggggga gagggcaagg aagcgcagcg gtccatagcg
     1861 acagcgtatg gacgggtgag ggggacagcg cagtgattac cgcgcgaact ccacaacatc
     1921 gagcagcgac tcctgcaccg ccggcatctc cagccgcatg tgattgtcgc caatgcccgt
     1981 caacaacccg atctgatcgt cgggcgtgac ctgcgcgccc aaggcgggcg agcggccgga
     2041 gtaattgtgg tacggctcgc cgcgggcgct ggacgcgccc agataaaccc aggcgccgtt
     2101 ttcgggaaac aggaagccga caaagcgctg gctgccgttc atcttctgca acagcaagcc
     2161 gccattgaag gggcggatgt tgcagctgaa ccagcgatca tagaccatgt aggacgtcat
     2221 gcggccgagc ttgatctgac ggcaatgcca gtcaccaacc agggcgttgg ccggaacggc
     2281 gcggccctgg ggctgcatca cgcgcggaat ggcgtgccag tcgccgcggc catcgccatg
     2341 ctgggcgtcg gcgatcgcgg catcgcgaat ctgaggaagc tgcgccagcc ggtcgatatc
     2401 ggcgggggag gcctggtcct gccagccggc aaaggcgcct gaggaaatgg aaacagcgcc
     2461 gagcgaaagc gccagcgcca aagaaattct acttgtccgc acgcccatcg ggatgctcct
     2521 ggccattttc cagtggcgtc caccccttca aatccgcggt cggcggcatg ccgatcacgt
     2581 tgaagccggc gtcgacgaag tgcacttcgc cggtaacacc acctgccagg tcactaagca
     2641 aatacagtgc cgcgccgccg acatggttaa ggtcgacggt tttcttcagc ggcgaatggc
     2701 tcttgttcca tttgaacacc atgcgggcat cgcccaccgc ggcgcccgcc agggtgcgca
     2761 tcgggcccgc cgaaatggcg ttgacccgga tgccgtcctt gccgaggtcg gcggcgagat
     2821 agcggacgga cgcttccagc gccgctttgg ccacgcccat gacattgtaa ttgggcatca
     2881 cccgctgggc gccgagatag gtcaaggtca ccaggctgcc gccctgggac atcagcttgg
     2941 cggcgcgctg ggccacggcg gtgaaggaat agcaggaaat atcgaggctt ctggcgaaat
     3001 tggcgcggga ggtatcgaca tagcggccct tcagctcatc acggtcggaa aaggcgatgg
     3061 catgcaccag aaaatcgatg gcgccccatt gcttggccag atgggcgaac accgcatcca
     3121 gctcttcgtc cttttcgaca tcggccggaa gcacgatggc ggagccgatg gactgggcca
     3181 gcggccccag gcgctttttc tgcgcctcgc cttgataggt aaaggcgatt tcggcaccct
     3241 gggacgccag catctgggcg atgccccagg cgatggaatg gtcgttggcc acgcccatca
//
LOCUS       DATMDK010000460         4559 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1594754,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000460 DATMDK010000000
VERSION     DATMDK010000460.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 4559)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4559)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4559
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1594754"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..721)
                     /locus_tag="VNN98_08820"
     CDS             complement(<1..721)
                     /locus_tag="VNN98_08820"
                     /inference="COORDINATES: protein motif:HMM:NF014790.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HWM62244.1"
                     /translation="MKKVAFDWTDPLLLEASLREEERLVRDSAHSFAQTRLMPLVRDM
                     HRLESFDPALLREMGALGLLGSSLEEFGGVSPVAYGLIAREVEKVDSAFRSSLSVQSS
                     LVMHPIHIFGSKAQREKYLPKLARGEWIGAFGLTESGAGSDPGAMQSRARKSKTGFVL
                     SGSKTWITHAPVADVLVVWAKLDDKIRGFLLERGDKGLTTPKIDGKFSLRASVTGEIA
                     MNDVEIPEDRMLPEAEGLKAPF"
     gene            complement(822..1754)
                     /locus_tag="VNN98_08825"
     CDS             complement(822..1754)
                     /locus_tag="VNN98_08825"
                     /inference="COORDINATES: protein motif:HMM:NF023568.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipase"
                     /protein_id="HWM62245.1"
                     /translation="MLLLSACAPTFAPPGDGHMIPILADDAVMARDGMRLPLRRWEAE
                     TGKPRAVIVALHGMSDYSGAFDMPAKVWAKLGITTLAYDQRGFGRSDNAGLWAGAEAM
                     RADLDDAVMAARARHPGVPVYALGESMGGAVVLTALASSTSPAVDGVILVAPAVWSRG
                     DMPLSYRAALFVAAHLMPGLILSNNAGKAIVRIVPSDNVPMMIALGKDPLFQKRTRAD
                     TLYGLVNLMDEARTAPEHIAATPPILFLYGANDQLIPAKPTQAVITALGEKAVVKRYD
                     HGWHMLLRDLEGETVDRDVADWVIAQGKPVSKAN"
     gene            complement(1780..2301)
                     /locus_tag="VNN98_08830"
     CDS             complement(1780..2301)
                     /locus_tag="VNN98_08830"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM62246.1"
                     /translation="MVEFWIPEESSGEIVAVNQLEAAPVQSAMARWQALRGATRFPGK
                     PDAVLETVPHNAILVRVMDEGGDYEYRSVGEALVAGFGEDFSGRRLSDIIAVTPRFGI
                     GLRMLYEMVRSSGEPLCYRGWVGADMPGALFVYYESAVLPFGQDETKVDHILVVSMLV
                     LRDQAFPAEALRV"
     gene            complement(2322..3569)
                     /locus_tag="VNN98_08835"
     CDS             complement(2322..3569)
                     /locus_tag="VNN98_08835"
                     /inference="COORDINATES: protein motif:HMM:NF019285.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside transporter C-terminal
                     domain-containing protein"
                     /protein_id="HWM62247.1"
                     /translation="MPHLQSALGICAIIALAWALSEDRRIFVWRIVLGTLALQAGVAL
                     LLLKLPMVREGLFRLNGVVTTLSAATGAGTSFIFGYMGGGPAPFTVTHPANMINLAFG
                     ILPLVMVISALSAILWHWRVLPFIVHGLAMVLKRTLGLGGAVGLGAAATVFLGNIEGQ
                     LVIRPYLARLARTELFILMTVGLSVIAGTVFVLYATILRGVLPGALGHLLVASLMSLP
                     AGVLIARIMVPGPAETDLSEQQESVHYRSTMDAMAHGTEDGLRIYLQILAMLIVMTSL
                     MALANGLLGQLPGVHGAPLTLERMLGWLFAPFVWLLGVPWSQAGTAGGLMGIKIILTE
                     LVAYLRLAALPAGALDPRSTQIMVYAMCGFANFASVGILIAGMSALIPERRDEVVSLA
                     LKALVAGTLASGLSGAMIGLLPF"
     gene            3705..>4559
                     /locus_tag="VNN98_08840"
     CDS             3705..>4559
                     /locus_tag="VNN98_08840"
                     /EC_number="2.3.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013884.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyltransferase"
                     /protein_id="HWM62248.1"
                     /translation="MTGKPASSEKTYSSAKIGALAGARAFPPLMVVMFHFSEGHHYSG
                     WRPLDFLATRGYLWVEFFFVLSGFILTHAYWARLKDLLRRPGYVAFLRARLIRLYPLH
                     LFMLLFLLAMVVGLRILAAHGGYLSIFDAKYHQNVGAEGFWLSLLLIQAWNTMNTLTW
                     NGVSWFVSVEFALCLAFPALLWLAEGKLWRGFALIGCGLAGLLALLFTSKHGLDITYH
                     NGVLRGLSDFSIGVGMAVLFRRMKPRDRMPEWLHSVLQLLLLALLAYVVMNTGWSHTR
                     MDIFTVLPL"
BASE COUNT          860 a         1532 c         1374 g          793 t
ORIGIN      
        1 cgaacggggc cttcaacccc tccgcctcgg gcagcatgcg gtcttcgggg atttcgacat
       61 cattcatcgc gatctcaccg gtgacgctgg cgcgcagcga gaacttgccg tcgatcttgg
      121 gcgtggtcag ccccttgtcg ccacgctcca gcaaaaatcc gcgaatcttg tcatccagct
      181 tcgcccatac caccagcaca tcggcgacgg gcgcatgggt gatccaggtc ttcgatcccg
      241 acagtacaaa acccgtcttg cttttgcggg cgcggctttg catcgcgccc ggatcggagc
      301 ccgcgccgct ttccgtcaat ccaaaagcgc cgatccattc gccccgcgcc agcttgggaa
      361 gatatttttc ccgctgcgct ttgctgccga agatatggat agggtgcatc accaggctgg
      421 actgcaccga cagcgacgag cggaaagcgg aatccacctt ttccacttca cgcgcgatca
      481 gcccataagc caccggtgag acgccgccga attcttccaa gctactgccc agcaggccaa
      541 gcgcccccat ctcccgcaac agcgcgggat cgaaactctc caggcggtgc atatcgcgca
      601 ccaggggcat caggcgcgtt tgtgcaaagc tgtgcgcgct gtcgcgtacc agccgttcct
      661 cctcgcgcag cgaggcctcc agcagcaatg gatcggtcca gtcgaaggcg accttcttca
      721 tacccccgcc caatataaaa tggccaaaat aagatcagga tgcaaaatcc accccttggg
      781 aaagcatacc gccatccccg cttccatcaa agaggacggt gtcagttcgc cttcgagaca
      841 ggcttgccct gtgcaatgac ccaatccgcc acgtcccggt ccaccgtttc gccttccagg
      901 tcgcgcagca gcatgtgcca gccatggtca tagcgcttga cgacagcctt ttcgcccagc
      961 gccgtgatca ccgcctgggt cggcttggcg ggaataagct ggtcgttggc accatagaga
     1021 aacaggatcg gcggcgtggc ggcgatatgc tccggtgcag tgcgcgcctc atccatcaga
     1081 ttgacgaggc catacaacgt gtcggcacgg gtgcgcttct ggaacaatgg gtctttcccc
     1141 aacgcgatca tcatcggtac attgtcggac ggcacgatgc gcacgatggc cttgccggca
     1201 ttgttcgaca gaatcagtcc cggcataaga tgggccgcca caaacaaggc ggcgcgatag
     1261 ctgagcggca tgtcgccccg cgaccatacc gccggcgcga ccaggatcac gccgtccacc
     1321 gcgggtgatg tagaagacgc cagcgccgtc agcaccaccg caccgcccat gctttcgccc
     1381 agcgcgtaga ccggcactcc gggatggcgc gcccgtgccg ccatgaccgc gtcatccaga
     1441 tcggcgcgca tcgcctccgc ccccgcccac aggccggcat tgtcgctgcg gccgaaaccg
     1501 cgttggtcat aggcgagtgt ggtgataccc agcttggccc acacttttgc cggcatgtcg
     1561 aaggcgcccg aataatcgct catgccgtgc agcgccacga tcaccgcccg cggcttgccg
     1621 gtctcggcct cccagcgccg cagcggcagc cgcatcccgt cgcgcgccat caccgcgtcg
     1681 tcggccagga tagggatcat atggccgtcc cccggcggcg cgaaggtcgg ggcgcaggcg
     1741 gaaagcagca gcaaaacgca gaccagaggc agccgcacat cacacccgca gcgcttcggc
     1801 cggaaaggcc tgatcgcgca gcaccagcat gctgaccacc aggatgtgat ccacctttgt
     1861 ctcatcttgg ccgaacggca gaacggcgct ctcataatag acgaacagtg cgccgggcat
     1921 gtccgcgccc acccagccgc gatagcagag cggctcgccg ctggagcgca ccatctcata
     1981 aagcattctg agaccgatgc cgaagcgcgg cgtgacggcg atgatgtcgc tgaggcggcg
     2041 gccggagaaa tcctcgccga agcccgccac cagcgcctcg cccacgctgc gatattcata
     2101 gtcgccgccc tcgtccatca cccgcaccag gatggcgttg tgcggaaccg tttccagcac
     2161 ggcgtcaggc ttgcccggaa accgcgttgc gcccctcagc gcctgccagc gcgccatcgc
     2221 gctttgcacc ggcgcggctt ctagctggtt gacggcgaca atttcgcccg aggattcttc
     2281 cgggatccag aattcgacca tcgccggact ctatgtctcc gtcagaaggg cagcaacccg
     2341 atcatggcgc cggacaggcc gctggccagg gtacccgcca ccagcgcctt cagcgccagc
     2401 gacaccacct cgtcgcggcg ttccggaatc aaggcgctca tgcccgcgat caggatgccg
     2461 acactggcga aattggcgaa gccgcacatg gcatagacca tgatctgggt gctgcgcggg
     2521 tccagcgccc ccgccggcaa ggccgccagc cgcagatagg cgaccagctc ggtgaggatt
     2581 atcttgatcc ccatcagccc gcccgccgtg cccgcctggc tccagggcac acccaggagc
     2641 cagacaaagg gcgcgaacag ccagcccagc atccgctcca gggtcagcgg cgcgccgtgt
     2701 acccccggca gttggccgag cagcccattg gccagcgcca ttagcgaagt catgacgatc
     2761 agcatagcca ggatctgcag atagattctc agcccatcct cggtgccatg ggccatcgca
     2821 tccatggtgg agcggtaatg cacgctctcc tgctgttcgc tgaggtcggt ttcggcgggc
     2881 cccggcacca tgatgcgcgc tatcaagaca cccgccggca gcgacatcaa ggaggccacc
     2941 agcagatggc ccagggcacc gggcagcacg ccacgcagaa tggtggcgta gagcacgaac
     3001 acggtgccgg cgatcaccga caggcccacc gtcatcagga tgaacagttc ggtgcgggcc
     3061 agccgcgcca gatagggacg gatcaccaac tggccttcga tattgcccag gaacacggtg
     3121 gcggccgcgc ccaagcccac cgcgccgccc agacccaggg tgcgtttcag caccatcgcc
     3181 aggccgtgca cgatgaaggg cagcacgcgc caatgccaca ggatcgccga cagggcgctg
     3241 atcaccatca ccagcggcag gatgccgaaa gccaggttga tcatgttggc gggatgggtg
     3301 acggtgaacg gcgccgggcc gccgcccata tagccgaaga tgaaactggt gccggcgccg
     3361 gtggcggcgg acagcgtcgt caccaccccg ttcagccgaa acagcccctc gcgaaccatg
     3421 ggcagcttga gaagcagcag cgccacccct gcctgcagag ccaaggtgcc cagcacgatg
     3481 cgccagacga aaatacgccg gtcctcggac agcgcccagg ccagtgcgat gatggcgcaa
     3541 attcccagcg cggattgcag atgcggcaac tatcggcccc cgccaaaacc ttcaatccca
     3601 cgctacacga tttcttcgct cataaaaggc gggcgtccta aaagacgctg ggcggcagga
     3661 cgcgacgggg ctagtgtcgc catggggatg gctcagagac aattgtgacc ggaaaaccgg
     3721 caagttcgga aaagacttat tcttccgcca aaattggggc actggcgggc gcgcgcgcct
     3781 tcccaccgct gatggtggtg atgtttcatt tcagcgaggg gcatcattac agcggctggc
     3841 gcccgctgga ttttctcgcc acccgtggtt atctgtgggt agaatttttc ttcgtcctgt
     3901 cgggtttcat cctgacccat gcctattggg cgcggctgaa ggatctgctg cggcgcccgg
     3961 gctatgtggc gtttctgcgg gcgcggctga tccggctgta tcccctgcat ttgttcatgc
     4021 tgctgtttct gctggcgatg gtggtgggat tgcgcatcct ggccgcccat ggcggctatc
     4081 tgtccatctt cgacgccaaa tatcaccaga atgtcggcgc cgagggtttc tggctcagcc
     4141 tgctcttgat ccaggcctgg aacaccatga acaccctgac ctggaacggc gtctcctggt
     4201 tcgtcagcgt ggagttcgcg ctgtgcctgg cctttccggc gctgctgtgg ctggcagagg
     4261 gaaagttgtg gcgcggcttt gccctgatcg gctgcgggct ggccgggctg ctggcgctgc
     4321 tgttcacctc gaagcatggg ttggacatca cctatcacaa tggcgtgctg cgggggcttt
     4381 ccgatttttc catcggggtg ggcatggcgg tgctgttccg ccgcatgaag ccgcgcgacc
     4441 gaatgccgga atggctccat tcggtgttgc aactgctgct gctggcgcta ctggcctatg
     4501 tggtgatgaa caccggctgg tcgcataccc gcatggacat cttcaccgtg ctgccgctg
//
LOCUS       DATMDK010000461         3312 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1595278,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000461 DATMDK010000000
VERSION     DATMDK010000461.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3312)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3312)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3312
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1595278"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(17..310)
                     /locus_tag="VNN98_08845"
     CDS             complement(17..310)
                     /locus_tag="VNN98_08845"
                     /inference="COORDINATES: protein motif:HMM:NF014389.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YggT family protein"
                     /protein_id="HWM62249.1"
                     /translation="MLNPIAALLIEVLEIYKWVVIAAVIVSWLTAFNVINVHNNFVRT
                     LLRILLALTEPVFRQVRRIIPPMGGLDLSPIVVFVVIWFLQYTIQWASFRYGL"
     gene            complement(414..489)
                     /locus_tag="VNN98_08850"
     tRNA            complement(414..489)
                     /locus_tag="VNN98_08850"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(454..456),aa:Ala,seq:cgc)
     gene            complement(557..1795)
                     /locus_tag="VNN98_08855"
     CDS             complement(557..1795)
                     /locus_tag="VNN98_08855"
                     /inference="COORDINATES: protein motif:HMM:NF019607.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sorbosone dehydrogenase family protein"
                     /protein_id="HWM62250.1"
                     /translation="MTKHRLMIGSLSAALMAAGTASAADHPGQKFQIFPANLAKPYAT
                     PATGNESNPIPRPAGAMPEVPQGFAVSLFADKLTAARWMAVAPNGDVFLAEPSEGGGK
                     ITVLRDSNGDGKADKAFTFVSSGFVYPHGLAFHDGYLYVGDLKGIWRIPYKDGQTVAG
                     APEKVTTKVADLRPRGNHVTRDIAFGPDGGLYLALGSRDNISDFKPGAQVFKINPDGS
                     MSEFASGIRNPVGIAFAPGTNTLYVTTNERDGLGDDLPPDYFTSVKQGGFYGYPYAYT
                     GPHPDPVWGPKDPAKVASSITPDVLFHAHSAPTGLAFYTGANFPAEYKGDAFVSLHGS
                     WNSGNPTGYKVVRVHFVGGKPVNGYENFATGFWNGMGNPGEPAKVWGRPVGLAVAKDG
                     SLLIADDVANAVWRVTYTGK"
     gene            1871..2305
                     /locus_tag="VNN98_08860"
     CDS             1871..2305
                     /locus_tag="VNN98_08860"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM62251.1"
                     /translation="MRLHAPVLVIAALLGAGLTVRAQDAPKAQKAPEHKTTQSKSYIM
                     VDPIYTTIVADNRAAGMLMVGAGLDVPNDALRDEVNRSLPVLRDAYIRNLMTFTANMV
                     RTDAQPDVGLIADRLQAVTDRALNKKGAKVLLAQVAIRVTSK"
     gene            2441..>3312
                     /locus_tag="VNN98_08865"
     CDS             2441..>3312
                     /locus_tag="VNN98_08865"
                     /inference="COORDINATES: protein motif:HMM:NF017076.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CHASE2 domain-containing protein"
                     /protein_id="HWM62252.1"
                     /translation="MDSSKTSMTWSRPLSLWLAPALLLALGTVAILTDSFGIEAGISD
                     RLFDAYQRHAARPFADTAGVPVRVLELPSLDEDSLVKATRTLSAQGAAIIVFAAPLQP
                     GPSPQSLAARLPPGSDAARTALAKLPEPGHDLAAAIADTKAVAPVMLGLAGRQPHIKA
                     RFVYRGTSDPFALVPHFDAAAASPALLETNAAGSAAANLMPDGDGVVRRMPLVFRVGA
                     ALVPGMAAEVLRVAAGKSNITVISNEHNPLSFLAGVGIAALETKNGPIVTDDGGRVRL
                     RYAANAFERLLNPDA"
BASE COUNT          590 a         1079 c         1046 g          597 t
ORIGIN      
        1 gcttacagtc catcgcttac agtccgtagc ggaacgacgc ccactggatc gtgtattgca
       61 ggaaccagat gacgacgaac accacgatgg gcgacagatc cagcccgccc atcggcggaa
      121 tgatgcggcg gacttggcgg aacaccggct cggtcagggc cagcaggatg cgcagcaggg
      181 tgcgcacgaa gttgttgtga acattgatga cgttgaaggc ggtcagccag ctcacgatca
      241 cggccgcgat cacgacccat ttgtagattt ccaggacttc gatcagcagg gcggcgatag
      301 ggttcagcat gactttttca atggcctatc gcttcgctac ttgaggccta taccttgtaa
      361 aggcgggaac tcttttggaa aagcctcaaa tcccggattt ttcggttcgg aaatggtgga
      421 gctgagcgga atcgaaccgc tggcctcctc attgcgaacg aggcgctctc ccaactgagc
      481 tacagccccg aaccgatttt ccggcctcta ccggaggccg gggttttagg gacgggggcc
      541 gggcccgtca atgcccctac ttccctgtat aagtcacccg ccacaccgca ttcgccacat
      601 cgtcggcgat cagcaggctg ccgtccttgg ccaccgccag gcccaccggg cggccccaga
      661 ccttggccgg ctcgcccgga ttgcccatcc cgttccagaa gccggtggcg aaattctcat
      721 agccgttgac cggcttgccg cccacgaaat gcacccgcac caccttgtag ccggtgggat
      781 tgccggagtt ccaagaaccg tgcagcgaga caaaggcatc acccttatat tcggccggga
      841 agttggcgcc ggtgtaaaag gccaagccgg tcggcgcgct gtgggcgtga aacagcacgt
      901 ccggcgtgat ggacgaggcc accttggccg gatccttggg tccccatacc ggatcgggat
      961 gggggccggt ataggcgtaa ggatagccgt agaagccgcc ctgtttgacg ctggtgaaat
     1021 aatccggcgg caggtcatcg cccaatccat cgcgctcatt ggtggtgacg tagagtgtat
     1081 tggtgccggg cgcgaaggcg atgcccaccg gattgcggat gccgctggcg aattcgctca
     1141 tgctgccgtc gggattgatc ttgaagacct gcgcccccgg cttgaagtcg gagatattgt
     1201 cccgcgagcc cagcgccaga tagagcccac catcgggccc gaaggcgatg tcgcgggtga
     1261 cgtggttgcc ccggggacgc aggtccgcga ctttggtggt cactttctcc ggcgcgcccg
     1321 cgacggtctg gccatccttg taggggatgc gccagatgcc tttgaggtcg ccgacataga
     1381 gatagccgtc atggaaggcc aagccatggg gatagacaaa gccggaagag acgaaggtga
     1441 atgccttgtc cgccttgccg tcgccattgc tgtcgcgcag cacggtgatc ttgccgccgc
     1501 cctcgctggg ttcggccaga aagacatcgc cattgggcgc caccgccatc cagcgggcgg
     1561 cggtcagctt gtcggcgaag agggaaacgg cgaacccttg cggaacttcc ggcatggcgc
     1621 cggccgggcg cgggatggga ttggactcgt tgcccgttgc gggagtggca tagggcttgg
     1681 ccagattggc agggaaaatc tggaatttct ggcccggatg gtcggccgcc gaagcggttc
     1741 ccgccgccat aagcgcagcc gaaaggctgc cgatcatcaa tctatgtttg gtcatttgcc
     1801 gctcccgtta aaattcgatt taccaatccg gcgcttactg gccccacgcc acgctgattt
     1861 ggtgttccga atgcgccttc acgctcccgt tcttgttatc gcagccctgc tcggggccgg
     1921 cctgacggtg cgcgcgcagg atgcccccaa agcccaaaaa gcgccagagc acaaaaccac
     1981 ccagtccaag agctacatca tggttgaccc catctacacc accattgtgg cggacaaccg
     2041 cgccgccggg atgctgatgg tgggcgccgg cttggacgtg cccaacgacg ccttaaggga
     2101 cgaggtcaat cgctccctgc cggtgctgcg cgacgcctat atccgcaacc tgatgacctt
     2161 caccgccaac atggtgcgca ccgacgccca gcccgatgtc ggcctgatcg ccgaccggct
     2221 gcaggccgtg acggaccggg ccctgaataa aaaaggcgcc aaggtgctgc tggcccaggt
     2281 cgctatccgc gtcacttcaa agtgaccccc tccgcccttc gcacctgatc ggtgctacgg
     2341 gcacctcccc ctcttgtgcg ctgcgcgcac gatggggagg cgggccagtg tttcgcggtg
     2401 cctagcccat catggttaac gcgaatagtc tgcgccggac atggattctt ccaagacctc
     2461 gatgacctgg tcccggcccc tcagcctatg gctggccccg gcgctgctgt tggcgctggg
     2521 aacggtcgcg atcctgacag acagtttcgg gattgaggcc ggcataagcg accggctgtt
     2581 cgacgcctat cagcgccacg ctgcccgccc ttttgccgat accgccggcg tgcccgtgcg
     2641 ggtgctggag ctgccgtcgc tggacgagga cagtctggtc aaggcgacgc gcaccttgtc
     2701 ggcccagggc gccgcgatca tcgtcttcgc cgcgccgctg cagccaggcc cttcgccgca
     2761 aagcctggcg gcgcgcctgc cgcccggcag cgacgcggcc cgcaccgcgc tggccaaact
     2821 gccggaaccg ggacatgacc tggccgccgc catcgccgac accaaggccg tggcgccggt
     2881 gatgctgggc ctggccggac gccagccgca tatcaaggcg cgcttcgtct atcgcggcac
     2941 cagcgatccc tttgccctgg tgccgcactt tgatgccgcc gccgcctcgc ccgctctgct
     3001 ggaaaccaac gccgccgggt cggccgccgc caacctgatg cctgacggcg acggggtggt
     3061 gcgccgcatg ccgttggtgt ttcgggtcgg cgccgccctg gtgccgggga tggcggccga
     3121 agtgctgaga gtcgccgccg gcaagtccaa catcaccgta atcagcaacg aacataatcc
     3181 tttgagcttc ctcgccgggg tcggcatcgc ggcgctggag acaaaaaatg gcccgattgt
     3241 caccgatgat ggcggccggg tgcggctgcg ctacgccgcc aatgccttcg agcgcctgct
     3301 caatcccgat gc
//
LOCUS       DATMDK010000462         2567 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1595557,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000462 DATMDK010000000
VERSION     DATMDK010000462.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2567)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2567)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2567
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1595557"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..635
                     /locus_tag="VNN98_08870"
     CDS             <1..635
                     /locus_tag="VNN98_08870"
                     /inference="COORDINATES: protein motif:HMM:NF013478.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009425 - bacterial-type flagellum basal
                     body [Evidence IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0006605 - protein targeting [Evidence IEA];
                     GO_process: GO:0044780 - bacterial-type flagellum assembly
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="flagellar biosynthetic protein FliR"
                     /protein_id="HWM62253.1"
                     /translation="LALAIAFALTPQVQANYPAVMPGSTMALFILIAQEVTAGVLVGA
                     MARIIMSALQVAGYLIATQTGLAYAQTIDPTQNTQGAVLGNFMSLLGTVLIFATNLHH
                     LAIGAIAGSYHMLPPGGHLPVGDMAQLVIQLTSSSFALGFQLAAPFLVFGFAVYAGLG
                     VLAKLMPQLQIFFVAVPLNIMCGFLIMLALIGSLMTVFLNYYTTSMAIFL"
     gene            673..1755
                     /gene="flhB"
                     /locus_tag="VNN98_08875"
     CDS             673..1755
                     /gene="flhB"
                     /locus_tag="VNN98_08875"
                     /inference="COORDINATES: protein motif:HMM:TIGR00328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0001539 - cilium or flagellum-dependent
                     cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FlhB"
                     /protein_id="HWM62254.1"
                     /translation="MADDQDKSQQTEEPTAKRLEQAREQGDVVKSTELTAFILLGGGT
                     LAIAMFGKYTAMGVARSLTLFLEEPDTMSVDGPGLLSMLRALLPQLAMALAPFFAVLC
                     IAGLTGHLLQSRPGFSLDKIAPDFSKVSPLAGFKRMFGVEGWMNLLKGLAKMIIVGLA
                     IWTQLWPERGGLEAILNQSTAAVLSDMSRLLFKVLMASLSALGVIGGLDYFWQRMRFM
                     ARNRMSKQEIKEEYRQNEGDPTIKAKIRQLRHERAKKRMMAAVPTATVVIMNPTHFAV
                     ALKYESGKMMAPICVAKGVDALALRIRAVAEENDIPVVENPPLARALHAAIEIDDPVP
                     AEHFKAVAQVIGYVMRLQGKLPARAN"
     gene            2001..>2567
                     /locus_tag="VNN98_08880"
     CDS             2001..>2567
                     /locus_tag="VNN98_08880"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM62255.1"
                     /translation="MSAAAAGVPTGAWRWAALGFVLLALIAAGLTIAAPQVAGLAGYV
                     LLGGIALVAILFLYAVWPRGSRATQDALRVAEAAARANIAWAITGEGGAVLDCNAVYR
                     RMAGVGETETPPPPELALAGEPSAAVLYRLSRDAAEGRAREETFVVIPGLEIVATVRP
                     LSDHQSVWWFTPRLAASTSPQPALSRAAA"
BASE COUNT          438 a          828 c          795 g          506 t
ORIGIN      
        1 tgctggcgct ggccatcgcc ttcgccttga cgccgcaagt ccaggccaat tatccggccg
       61 tcatgcccgg gtccaccatg gccttgttca tcctgatcgc ccaggaagtc accgccggcg
      121 tgctggtagg cgccatggcg cgcatcatca tgagcgcact gcaggtggcc ggttacctga
      181 tcgccaccca gacgggcctg gcctatgccc agaccatcga ccccacccag aatacccaag
      241 gcgccgtgct gggaaatttc atgtcgctgc tgggaacggt gctgattttc gccaccaacc
      301 tgcatcacct ggcgatcggc gccatcgccg gcagctatca catgttgccg ccgggcggcc
      361 atttgccggt gggcgacatg gcccagttgg tgattcagct taccagttcg tccttcgccc
      421 tgggctttca gctggcggcg ccgttcctgg tgttcggctt tgcggtctat gcggggctcg
      481 gcgtgctggc caagctgatg ccgcaattgc agattttctt cgtcgccgtg ccgctcaaca
      541 tcatgtgcgg cttccttatc atgttggcgc tgatcggctc gctgatgacg gtgttcctga
      601 actactacac cacctccatg gcaatctttt tgtgacgcct caaggtgcga agcgataggc
      661 gattaaataa gcatggctga cgaccaggac aaatcccagc agaccgaaga gccgacagca
      721 aaacggctcg aacaggcgcg cgagcagggc gatgtcgtca aatccaccga actcaccgcc
      781 ttcatcctgc tgggcggcgg caccttggcc atcgccatgt tcggcaaata taccgccatg
      841 ggcgtggccc gctcgctgac cctgttcctg gaagagccgg acacgatgag cgtggacggc
      901 ccgggccttc tgtccatgct gcgcgccctg ctgcctcagc ttgccatggc gctggcaccg
      961 ttctttgcgg tgctgtgcat tgccggcctg accggccatc tgctgcaaag ccgtcccggt
     1021 ttttccctcg acaagatcgc gccggatttt tccaaagtat cgcccctggc cggcttcaag
     1081 cgcatgttcg gcgtggaagg ctggatgaat ctgctcaagg ggctggcgaa gatgatcatc
     1141 gtcggcctgg cgatctggac ccagctgtgg ccggagcggg gcgggctgga agccattctc
     1201 aaccaatcca cggcggcggt gctgagcgac atgtcgcgct tgctgttcaa ggtgctgatg
     1261 gcctcgctgt cggcgctggg ggtgatcggt ggcctcgatt atttctggca gcgcatgcgc
     1321 ttcatggcgc gcaaccgcat gtccaagcag gagatcaagg aagaatatcg ccagaatgaa
     1381 ggcgatccca ccatcaaggc caagatccgc cagctgcgcc atgagcgcgc caagaaacgc
     1441 atgatggcgg cggtgcccac cgccacggtg gtgatcatga acccgaccca ctttgccgtg
     1501 gcgctgaaat acgagtccgg caagatgatg gcgccgattt gcgtcgccaa gggcgttgac
     1561 gcgctggcac tgcgcattcg cgccgtggcg gaggaaaacg acattccggt ggtggaaaat
     1621 ccgccgctgg cgcgtgcgct gcacgccgcc attgagatcg acgatccggt gcccgccgaa
     1681 cacttcaagg cggtggccca ggtcatcggt tatgtcatgc ggctgcaagg caaattgccg
     1741 gccagagcca actaaagtcc tcccgcgctg gttgccgggc gcctcgccca agctcggcgc
     1801 gttcgtcgct cgaattgatc cgtgaaggat caattcgttc gccttcggcg aatcgcttct
     1861 cactgttaac tttctgcttg caaaagcctg aacagtgttc gggggcccca aaaatcccat
     1921 aggcaaatca atcccttaac ccttggaaag gattggttaa ccgaatcttg tattgtgcgg
     1981 gcatgagcac cgctaaatct atgtccgcag ccgctgcagg ggtgccaact ggcgcctggc
     2041 gctgggcggc tttgggcttc gtcctgctgg cgctgattgc cgccggcctg accatcgcgg
     2101 cgccgcaagt ggcggggctg gcgggctatg tcctgctcgg cggcatcgcc ttggtcgcca
     2161 tcctgtttct ctacgcggta tggccgcgcg gcagccgcgc cacccaggac gcgctacgcg
     2221 tggccgaagc cgccgccagg gccaatatcg cctgggccat caccggcgaa ggcggcgcgg
     2281 tattggactg caatgctgtc taccgccgca tggcgggcgt tggcgagaca gagaccccgc
     2341 cgccgcccga actggcgctg gcgggcgagc ccagcgcggc ggtgctctac cggctgtcgc
     2401 gcgacgccgc cgaaggccgc gcccgcgaag agacattcgt agtgataccc ggtttggaga
     2461 ttgtcgccac cgtgcgcccc ttgtccgatc accagtcggt ctggtggttc accccgcgcc
     2521 tggctgccag cacttcgccc cagccggcgc tatcacgtgc agctgcc
//
LOCUS       DATMDK010000463         2397 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_3188297,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000463 DATMDK010000000
VERSION     DATMDK010000463.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2397)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2397)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2397
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3188297"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            49..558
                     /locus_tag="VNN98_08885"
     CDS             49..558
                     /locus_tag="VNN98_08885"
                     /inference="COORDINATES: protein motif:HMM:NF024854.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix DNA-binding protein"
                     /protein_id="HWM62256.1"
                     /translation="MTAMTKPQGAEALGSATSVRRHYLETLNLVERLHRQLLDVIKDE
                     LDRRDEREINSVQALLLFNVGDQELTAGELRTRGHYLGSNVSYNLKKLVEGGYIHHER
                     SEADRRSVLVRLTRKGEVVRDMLRELFDRHLGSLEAVGNVGADHLESLNTTLKRLERF
                     WIDQVRFRL"
     gene            703..1350
                     /locus_tag="VNN98_08890"
     CDS             703..1350
                     /locus_tag="VNN98_08890"
                     /inference="COORDINATES: protein motif:HMM:NF018745.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1345 domain-containing protein"
                     /protein_id="HWM62257.1"
                     /translation="MKGLIAILSRHKRFYIALVCGLGTALVAKLLGFDAPLLAGGDIF
                     YLVFLILCGVMIAGETASDLKRRAKNEDEGIVIVLLVTLATVAFFCDAVFTALSKKHG
                     LDIPPLVLAGIGAPLGWMVLHTVMAFHYANIHYFDDPDVEGDEKDLAFPGGGDPGPWD
                     FLYYSFVVGMTAQVSDVQVLTTAMRRATLLHGVASFFFNTVLIAMTVNAAVTLAF"
     gene            complement(1334..2080)
                     /locus_tag="VNN98_08895"
     CDS             complement(1334..2080)
                     /locus_tag="VNN98_08895"
                     /inference="COORDINATES: protein motif:HMM:NF018649.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1295 domain-containing protein"
                     /protein_id="HWM62258.1"
                     /translation="MVFAVTAAVMLWLLSLRLRDVSIVDIFWGPGVAGVVDIAAAVGH
                     AGGPRTSAVLLLVNLWAIRLAAHIWARHKGEDHRYGAMRTKFGRNWWWTSLVQVFLLQ
                     AILIWFIPAPLVAAVLYSRVPMGWLDYLGVAVAACALVFEALADSQLAAFRADPANQG
                     RVLDRGLWGWSRHPNYFGEAAMWWGYFAIGFAASHMWWLLLSPLLITFLLLQVSGVSL
                     MEETMDERRPGYAGYKRRVSAFVPWAKKPK"
     gene            2213..>2397
                     /locus_tag="VNN98_08900"
     CDS             2213..>2397
                     /locus_tag="VNN98_08900"
                     /EC_number="2.3.1.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019052094.1"
                     /note="catalyzes the formation of 5-aminolevulinate from
                     succinyl-CoA and glycine; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-aminolevulinate synthase"
                     /protein_id="HWM62259.1"
                     /translation="MAFSYKSRFQDALSALRREGRYRIFADILRERGAFPQASYKSGQ
                     QASEDGSPVTVWCSNDYL"
BASE COUNT          471 a          750 c          727 g          449 t
ORIGIN      
        1 atctggccgt aacaacaagg tgggccctgc aaaaagtggg gaaagcaaat gacagcgatg
       61 acaaaaccgc agggcgcgga agcgctcggc agtgctactt cggtgcgcag gcattacctc
      121 gagaccctca atctcgtgga gaggttgcat cgtcagcttc tcgatgtgat caaggacgaa
      181 ctggatcgcc gcgacgaacg cgagatcaat tcagttcagg cgttgctgct gttcaatgtc
      241 ggcgaccagg aactgacggc gggcgagttg cgtacgcgcg gccactatct cggttccaat
      301 gtctcctaca atctcaagaa gctggtggaa ggcggttaca tccatcatga acgctccgaa
      361 gccgaccgcc gttcggtact ggtgcgcctg acccgcaagg gcgaagtggt ccgcgacatg
      421 ctgcgcgagc tgttcgaccg ccatctgggc tcgctggaag cggtgggcaa tgttggcgct
      481 gaccatctgg aaagcctgaa tacgaccctc aagcgtctgg aacgcttctg gatcgaccaa
      541 gtgagattcc gcctttaggg acgcttgtct tttgcgccct gagttcgtcg cgcgtgctca
      601 cgggcttcta gcccgctccg cgcgacgctc ctgctcaggt cgcaaaatcc cgcgcgtcgc
      661 gcattggtcc ggtgcgcccc gactcagcta gtatctggcc ccatgaaggg cctgatcgcc
      721 atcctgtcgc gccataagcg tttctatatc gcgctggtct gcgggctggg caccgcccta
      781 gtggcgaagc ttctgggctt tgacgccccg ctgctggccg gcggcgacat cttctatctc
      841 gtctttttga tcctgtgcgg cgtgatgatc gccggcgaga ccgcatccga tctcaagcgt
      901 cgcgccaaaa acgaggacga aggcatcgtc atcgtgctgc tggtcacctt ggccaccgtg
      961 gcgtttttct gcgacgcggt gttcaccgcc ttgagcaaga agcatggact ggatatcccg
     1021 ccgctggtgc tggcagggat cggcgcgccg ctgggctgga tggtgttgca cacggtaatg
     1081 gcgttccatt atgccaacat ccattatttc gacgatccgg acgtcgaggg cgacgagaaa
     1141 gacctggcct tccccggcgg cggcgatccg gggccgtggg attttctcta ttattctttt
     1201 gtggtgggga tgacggcgca ggtttccgac gtgcaggtgc tcaccacggc gatgcgccgc
     1261 gccaccctgc tgcacggcgt ggcgtcgttc tttttcaaca ccgttctcat cgccatgacg
     1321 gtcaacgctg ctgtcacttt ggctttttag cccaaggcac aaaggcgctg acccggcgtt
     1381 tgtagccggc atagccgggg cggcgttcgt ccatcgtctc ttccatcaaa ctgacgccgg
     1441 atacctgcag cagcaggaag gtgatcagca gcggcgacag cagcagccac cacatatggc
     1501 tggcggcgaa accgatggcg aaatagcccc accacatcgc cgcctcgccg aaatagttgg
     1561 gatgacgcga ccagccccac aggccccggt ctagcacccg gccctggttg gcgggatcgg
     1621 cgcggaaggc cgcgagctgg gagtcggcca gggcctcgaa caccagggca caggccgcaa
     1681 ccgcgacccc cagatagtcc agccagccca tcggcacccg gctgtacagc accgccgcca
     1741 ccagcggagc ggggatgaac cagatgagaa tcgcttgcaa caagaacacc tgcaccaggc
     1801 tggtccacca ccagtttcgc ccgaacttgg tccgcatcgc gccatagcgg tgatcttcgc
     1861 ccttatggcg cgcccagata tgggcggcca gcctgatggc ccagagattc accaacaaaa
     1921 gcacagcgga ggtgcgcgga ccgccggcat ggccgaccgc cgcggcgata tccaccaccc
     1981 cggccacacc aggcccccag aagatgtcca cgatactgac gtcgcgcagg cgcagactga
     2041 gcagccacag catgaccgcg gcggtgacgg cgaagaccaa accccaagtc gatggggaga
     2101 gaaggggcag cgaaaatagg ggccaagtca tgtgacaaat tgcgtggaat caaacacttg
     2161 tttcgcgcta tcgtatccca tgcgggcata gacctgtgca aaggcttgag tcatggcgtt
     2221 ttcctataag tccagatttc aggacgcatt gtcggccctc aggcgcgaag gccgctatcg
     2281 gattttcgcc gacattctgc gcgagcgcgg cgcctttccc caagcctctt ataagtccgg
     2341 ccagcaggcg tccgaggacg ggagccccgt caccgtctgg tgctccaacg attacct
//
LOCUS       DATMDK010000464         3941 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1596892,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000464 DATMDK010000000
VERSION     DATMDK010000464.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3941)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3941)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3941
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1596892"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1731
                     /locus_tag="VNN98_08905"
     CDS             <1..1731
                     /locus_tag="VNN98_08905"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015267 - channel activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HWM62260.1"
                     /translation="ITSFTEGSTNSGFPESGSLNGREVWRAAAGADGNFNLLDTDWKW
                     DYYAQYGMANTREQETQTWNNARLALAQDAVVVTAANRGTSGLALGSIACRSTLTAPT
                     NGCSPLSRIGVNGGTQDPAAFQQGLNYVLGTPFRTQRLQEQSTGFNVSGTPLSDWAGP
                     ISVAFGAEWRLESINGFVPTQYNSGWLFGNYLVNKGHYSVAETYLETVVPLMKGLDFN
                     GAYRYTAYSTSGGVSTWKTGLTYSPIDDIKFRVTYSHDIRAPNLNELFAAGTARTNTV
                     AVNNNSITFVQNQTGNPNLSPEAANSLGLGTVITPTMIPGLALSVDYYNITIAHAIGS
                     ITAQNTADLCFVQAIQQYCNNISYTGGGVARPTDTVTPINTILLVPFNFSKQKSEGID
                     FDVTYQMPLEDMDWFGKIPGDLTLHALMTHYMRNYTNDGVNPPTDLAGVNSGTGTPEW
                     VYRMSATYHTDPWTFYVMGRGISAGKYSNEYVICSTGCPVSTLANRTMNYNHIDGAFY
                     LDTTVSYDFDAYGADSQIFLSVKNLFNSDPALVASGPDGNNIPAYPNTNRNLYDYLGR
                     VYRIGLRLKM"
     gene            1811..3451
                     /locus_tag="VNN98_08910"
     CDS             1811..3451
                     /locus_tag="VNN98_08910"
                     /inference="COORDINATES: protein motif:HMM:NF019307.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004180 - carboxypeptidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HWM62261.1"
                     /translation="MTATRKLIALLLSASILSPLPSLALAPPDLKQEAIANVDSHTKL
                     VQVMVDTVFSYGEPGFQEFRTSAYLTDILAKNGFKVTKGVAGIPTAWTATWGEGGPLI
                     AMGSDEDDLRGVSQIPGDPKIEPIVAGAPGHGEGHNSGMPLQIAAALAIKAVMEKHHI
                     KGRLMLWPGIAEELLGTKAFYVRDGLFKGVDACIFTHVSNDFTTSYGPSSNGMVSIEY
                     TFHGRTAHAAGDPWDGRSALDAVELMDVGMNFRREHLPLSTRTHYVISNGGGQPNIVP
                     GLASVWYYFRDHTFDSVKSLFEIGNKTADAAAMMTDTTVEHKLLGTAAPNFGNKPMAE
                     LAQANIEQVGMPKWTADDQAFAKLVQETQQRKVEPLRDKVSPLQPEREERLPTGGGSD
                     DIGDIMWTVPTITIRFPSNIPNMIGHNVTSAMAMATPIAHKGAVAGAKAVAMTVLDLL
                     TTPEELTKAKQYFDTDQQKYDHYKPFVSATDVPAIHVNDDYMRTYRPLMEPYYYDSKK
                     YDSYLDQLGIKFPNPPTAPIRKITPPKSSGDTSSGGGG"
     gene            3513..>3941
                     /locus_tag="VNN98_08915"
     CDS             3513..>3941
                     /locus_tag="VNN98_08915"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM62262.1"
                     /translation="MIASVLRRTASLLLCASMLTPAFAAAPADMKREAAANVDAHAKL
                     VQTMVDMVFSYAEPGFQEYRTSAYLTGILEKNGFKITRGIAGMPTAWTATWGEGGPLI
                     AMGSDEDDLRGLSQVPGSPTIKPLVPGAPGHGEGHNAGVPL"
BASE COUNT          800 a         1276 c         1125 g          740 t
ORIGIN      
        1 atcacttcct tcaccgaagg ttcgaccaat tccggctttc cggagtcggg cagcctgaat
       61 gggcgcgaag tctggcgcgc cgctgccggt gccgacggca atttcaatct gctcgatacc
      121 gattggaagt gggactatta cgcgcaatac ggcatggcca acacgcgcga gcaggaaacc
      181 cagacctgga acaatgcccg cctggccctg gcgcaagacg cggtggtcgt taccgcggcc
      241 aaccgcggta cctccggtct tgcccttggc agcatcgcct gccgttccac cctcactgcg
      301 ccgaccaatg gctgttcgcc cttgtcgcgt atcggcgtca atggcggtac gcaggatccg
      361 gctgccttcc aacaaggcct caactatgtg ctgggcaccc ccttccgcac ccagcggctg
      421 caggaacagt ccaccggctt caacgtttcc ggcacgccgc tctcggactg ggccggtccc
      481 atctcggtgg ccttcggcgc cgaatggcgg ctggaatcga tcaacggctt cgttccgacg
      541 caatataatt cgggctggct gttcggcaat tacctggtga acaagggcca ttattctgtg
      601 gccgagactt atttggaaac cgttgtccca ctgatgaagg gcttggattt caacggcgcc
      661 tatcgctaca ccgcctatag cacgtccggc ggcgtttcga cctggaagac gggcttgacc
      721 tatagcccca tcgacgacat caagttccgc gtcacctatt cgcacgatat tcgcgcgccc
      781 aacctgaacg aattgttcgc ggcgggcacc gcgcgcacca acacggtggc agtgaacaac
      841 aattccatca cctttgtgca gaaccagacc ggcaatccca acttgtcgcc ggaagccgcc
      901 aacagcctgg ggctgggaac ggtgatcaca cccaccatga tccccggcct ggcgctgtct
      961 gtggactatt acaatatcac cattgcgcat gcgatcggtt cgatcacggc gcagaacacc
     1021 gctgacctct gcttcgtgca ggccatccag caatactgca acaacatttc ctatacgggc
     1081 ggcggtgtcg ctcgcccgac cgacacggta acacccatca acaccatcct gctggtgccg
     1141 ttcaacttct ccaagcagaa gtccgaaggc atcgacttcg acgttaccta ccaaatgccg
     1201 ctggaagaca tggattggtt cggcaagatc cccggcgatt tgaccttgca cgccctgatg
     1261 acccactaca tgcgcaacta taccaatgac ggcgtcaatc cgccgacgga tctggcgggc
     1321 gttaatagcg gcaccggcac gccggaatgg gtgtatcgca tgagcgccac ctaccacacc
     1381 gatccctgga ccttctatgt gatgggccgc ggcatcagcg ccggtaaata ttccaacgag
     1441 tatgtcatct gcagcaccgg ctgcccggtc tcaacccttg ccaaccggac catgaactac
     1501 aatcacatcg acggcgcctt ctatctggat accaccgtca gctacgactt cgacgcctat
     1561 ggcgccgaca gccagatatt cctgtcggtg aagaatctgt tcaattccga tccggcgctg
     1621 gttgcttctg gcccggatgg caacaacatc ccggcctatc ccaacaccaa ccgcaatctc
     1681 tatgactatc tgggccgggt gtatcgcatc ggcctgcgcc ttaaaatgta acccgagcct
     1741 tggcctgttc cgcgagaggc ggggcgggcc attttttcag caccgacagc caagaaaatc
     1801 ggagacgatc atgactgcca ccaggaaact catcgccctt ctgctcagcg cgtctatttt
     1861 gtcgccgctg ccgtccttgg cgctggcgcc gccggatttg aagcaggaag ccatcgccaa
     1921 tgtcgacagc cacaccaagc tggtccaggt gatggtggat accgtgttca gctatggcga
     1981 accgggcttc caggaattca ggacgagcgc ctatctcacc gacatcctgg ccaagaacgg
     2041 ctttaaggtc accaagggcg tggcgggcat tcccaccgcc tggaccgcca cctggggcga
     2101 gggcgggccg ctgatcgcca tgggcagcga tgaagacgat ctgcgcgggg tgtcgcagat
     2161 tccgggtgat cccaagatcg aacccatcgt ggcgggcgcg ccgggtcatg gcgaagggca
     2221 caattccggc atgccgctgc agatcgctgc ggcgctggcg atcaaggcgg tgatggaaaa
     2281 gcatcacatc aagggccggc tgatgctgtg gcccggcatc gccgaggaat tgctgggcac
     2341 caaagccttt tatgtgcgcg acggcctgtt caagggggtc gatgcctgca tcttcaccca
     2401 tgtctccaat gacttcacca cctcctatgg ccccagcagc aacggcatgg tgtccatcga
     2461 gtatactttc cacggccgca ccgcccatgc cgcgggcgac ccctgggacg ggcgcagtgc
     2521 gctggacgcg gttgagctga tggatgtggg catgaatttc cgccgcgaac atctgcccct
     2581 gtcgacgcgc acgcattatg tgatcagcaa tggcggcggc cagcccaaca tcgtgccggg
     2641 cctggcctcg gtctggtatt atttccgcga ccacactttt gactcggtca agtccctgtt
     2701 cgagatcggt aacaagaccg ccgatgccgc cgcgatgatg accgacacca cggtcgagca
     2761 taagctgctg ggcaccgccg cgcccaattt cggtaacaaa ccgatggccg aactggccca
     2821 ggccaatatc gaacaggtcg gcatgcccaa atggactgcc gacgaccaag cctttgccaa
     2881 gctggtgcag gagacccagc agcgcaaggt cgagccgctg cgcgacaagg tttcgccgtt
     2941 gcagccggaa cgggaggagc gcctgcctac cggcggcggc tccgacgata tcggcgatat
     3001 catgtggact gtgccgacca tcaccattcg tttcccgtcc aacatcccca acatgatcgg
     3061 gcataatgtg acttcggcca tggcgatggc gaccccgatc gcccacaagg gcgcggtggc
     3121 gggcgccaag gcggtggcga tgacggtgct ggatctgctg accacaccgg aagaactgac
     3181 caaggccaag caatatttcg acaccgacca gcagaagtac gatcattaca agccgttcgt
     3241 gtcggcaacc gacgtgcccg cgatccacgt caatgacgat tacatgcgca cctatcggcc
     3301 gctgatggag ccctattatt acgactccaa gaagtacgac tcctatctcg atcagttggg
     3361 tatcaagttc cccaacccgc cgaccgcgcc aattcgcaag atcacgccac ccaaatcttc
     3421 cggtgacacc agctcgggtg gcggcggttg atgggtggca ggccggcttc gcccagaacg
     3481 aagccggccg catttctttg aggaaaagtt cgatgattgc ttccgtcctg cgccgcaccg
     3541 ccagcctttt gctctgcgcc tccatgctga cgcccgcttt cgcggccgca cccgcggaca
     3601 tgaagcggga ggccgccgcc aatgtggatg cccatgccaa gctggtgcag accatggtgg
     3661 acatggtgtt cagctatgcc gagccgggat tccaggaata caggacgtcg gcttatctca
     3721 ccggcatcct tgagaagaac ggtttcaaga tcacgcgcgg catcgccggc atgcccaccg
     3781 cctggaccgc cacctggggc gagggcggtc cgctgatcgc catgggcagc gacgaagacg
     3841 atctgcgcgg cctgtcacag gtgccgggtt ctcccacgat caagccgctg gtgcccggtg
     3901 cgcccggaca tggcgagggc cataatgcgg gcgtgccgct g
//
LOCUS       DATMDK010000465         6214 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1366697,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000465 DATMDK010000000
VERSION     DATMDK010000465.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 6214)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6214)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6214
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1366697"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..539
                     /locus_tag="VNN98_08920"
     CDS             <1..539
                     /locus_tag="VNN98_08920"
                     /inference="COORDINATES: protein motif:HMM:NF024758.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008233 - peptidase activity [Evidence
                     IEA];
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="serine protease"
                     /protein_id="HWM62263.1"
                     /translation="ARAMAIAQPEIAAAYLPLHARVHLGLDSADGAAVVIAPGIAVTN
                     AHNANLLEPKSVIGTRQDYDLLFFRTPKNAAPQTAAPIIGQGVTAYGQGGDSELRVAH
                     GTVREIKQCAGCTAPAYFVFAGHAGPGFSGGPVLDGSGHLVGITFGYKNEGHERLIYA
                     YDMSRVRVELSASQKRSN"
     gene            652..3387
                     /gene="gyrA"
                     /locus_tag="VNN98_08925"
     CDS             652..3387
                     /gene="gyrA"
                     /locus_tag="VNN98_08925"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: protein motif:HMM:TIGR01063.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003916 - DNA topoisomerase activity
                     [Evidence IEA];
                     GO_function: GO:0003918 - DNA topoisomerase type II
                     (double strand cut, ATP-hydrolyzing) activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006259 - DNA metabolic process [Evidence
                     IEA];
                     GO_process: GO:0006265 - DNA topological change [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA gyrase subunit A"
                     /protein_id="HWM62264.1"
                     /translation="MTDIPDTLNPPDGGNPVQTIAVEDELKRSYLDYAMSVIVQRALP
                     DVRDGLKPVHRRILYSMHENGYDWNKAYRKSARVVGDVIGKYHPHGDQSIYDALVRMA
                     QEFSMRVPLIDGQGNFGSVDGDPPAAMRYTEVRRAKIAHALTEDIDKDTVEFRDNYDG
                     TEREPAVLPSRFPNLLVNGSSGIAVGMATNIPPHNPGEVIDACLAYIDDPSINLERLT
                     EIVPGPDFPTGALLIGKQNARAALARGRGGVLMRARCAVEEIRKDREAIIVTELPYQV
                     NKAMLIERIAELVRDKKIEGISDIRDESDRSGMRMVIELKRDASSEVVLNQLYRFSNL
                     QMSFGVNMLALNDGRPVQMNLKDMLGAFVNFREEVVTRRTKFDLSKARDRGHVLVGLA
                     VAVANIDEVIRLIRAAPDAATARAQLMDRAWPAKDVAPLVALIADPRHRMEAGETIRL
                     SEEQAKAILDLRLQRLTALGRDEINDEAQKLGLAIADYLDILSSRGRVLIMIRDELGA
                     IRDEFATPRKTELIDAETEMEDEALIEREDVAVTVTHNGYIKRTPLAEYRVQGRGGKG
                     RSGMATRDEDFVTSLFVASSHAWLLFFSSTGMAYKLKVWRLPEARIAGKGKAMVNLLP
                     LAQGERITTILALPEDETEWDKLNVVFATKSGDVRRNQLSDFQQVNKNGKIAMKLAPG
                     DGIIGVATCTDADDFLLTSRGGKAIRFPVADVRVFKGRDSTGVRGIKLGASDAVVSLA
                     LLYHSDATSAEARAYLKQASAARRAESGEAEAPVEAEDLSSEEGAEEGVEEATLTPER
                     YAGLGAREQFVLTMSQTGFGKRSSSYEYRVTGRGGSGIVAIGMGKKNSAVIGSFPVED
                     SDDLMLISDAGQTIRVAVSGISIQGRAAQGVTVFRVDEGERVVSVERIADVGEGE"
     gene            3384..3902
                     /gene="coaD"
                     /locus_tag="VNN98_08930"
     CDS             3384..3902
                     /gene="coaD"
                     /locus_tag="VNN98_08930"
                     /EC_number="2.7.7.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017979931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004595 - pantetheine-phosphate
                     adenylyltransferase activity [Evidence IEA];
                     GO_process: GO:0015937 - coenzyme A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pantetheine-phosphate adenylyltransferase"
                     /protein_id="HWM62265.1"
                     /translation="MTAPVKKQRTGLYPGTFDPVTLGHCDIIKRAVKLVDHLVIGVAT
                     NAAKAPLFTLDERVAMVKSEAERLAAGHATIDVVPFSSLLVKFAAQVGASVIIRGLRA
                     VSDFEYEFQMVAMNQRLNTEIETVFLMADPRHQAISSRLVKEIALLGGDITPFTTPAV
                     AAALVKRCKEKT"
     gene            3902..4372
                     /locus_tag="VNN98_08935"
     CDS             3902..4372
                     /locus_tag="VNN98_08935"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: protein motif:HMM:NF012387.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA];
                     GO_process: GO:0000413 - protein peptidyl-prolyl
                     isomerization [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HWM62266.1"
                     /translation="MADYLILDLKDGPVKIKLRADLAPNHVERIKTLANKGFYDGVVF
                     HRVIPGFMAQTGDPTGTGSGGSDLPDLKAEFSGEKHKRGTVSAARSGNPNSANSQFYI
                     CFTDAPWLDRQYSVWGEVTEGMDNVDKIKKGGEHNNGTISGDPDKILKAHIEAE"
     gene            4518..5645
                     /locus_tag="VNN98_08940"
     CDS             4518..5645
                     /locus_tag="VNN98_08940"
                     /EC_number="2.6.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF013227.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DegT/DnrJ/EryC1/StrS family aminotransferase"
                     /protein_id="HWM62267.1"
                     /translation="MADPIPLIDLQAQRRRLGAPLEAAIKAAIEGGQWILGPQVAQFE
                     KDIAAWAGVKHAIACANGTDALLLVLRAWGVGPGDAVFVPAFTFAASAEVVALAGASP
                     VFVDVLSDTFNMDPASLEAAIALVKQEGKVTPKVVMPVDLFGQPADYAALAPIAKSEG
                     LKLFCDTAQGFGGLLDGKRAGAIGDAAATSFFPAKPLGCYGDGGACFTNDDALKHLLL
                     SLRMHGQGEDRYEHVRVGYNSRLDTIQAAILIEKLKIFDDEIEKRNVVAQRYNEAFAG
                     SNRIKTPVVIAGATSTWAQYTLQVTDRAKFQADLKAAGVPTAVYYPIPLSQQRAYAHY
                     PSAPTPVSAALCGHVVSLPMHPYLDETTQNRVIAAVLASAG"
     gene            5807..>6214
                     /locus_tag="VNN98_08945"
     CDS             5807..>6214
                     /locus_tag="VNN98_08945"
                     /inference="COORDINATES: protein motif:HMM:NF021472.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2189 domain-containing protein"
                     /protein_id="HWM62268.1"
                     /translation="MTIRNPIEWSGAQLVSAAHAADAVGRSIDHMRNTAHSPAPAIRH
                     IKNSDVWQSLRQGFSDFEAYRSDVIFLCVIYAVVGLVMARVAFGANLLPLLFPLASGF
                     AIIGPLSAVGLYEMSRRREQGAEVGWANAFDVLK"
BASE COUNT         1160 a         1954 c         2010 g         1090 t
ORIGIN      
        1 gcgcgcgcgc catggcgatt gcgcagcctg agattgccgc cgcttatctg ccgttgcatg
       61 cacgggtgca tctggggctg gacagcgccg acggcgcggc ggtggtgatt gcgcccggta
      121 tcgccgtcac caacgcccat aatgccaacc tgctggaacc caaaagcgtg atcggcacgc
      181 ggcaggatta cgacctgctg ttcttccgca cccccaaaaa cgccgcgccg caaaccgccg
      241 cgcccattat cggccagggc gtcaccgcct atggtcaggg cggcgacagc gaattgcgcg
      301 tcgcccacgg caccgtgcgc gagatcaagc aatgcgcggg ctgcaccgcg ccggcctatt
      361 tcgtctttgc gggacatgcc ggccccggct tttccggcgg accggtgctg gacggttccg
      421 gccacctggt cggcatcacc ttcggctaca agaacgaagg ccatgaaagg ctgatctatg
      481 cctatgacat gagccgggtg cgggtggagc tttccgcttc gcaaaaacgg tcaaattagc
      541 ctttcaaatc agtgtcttat attgggttaa tttgctggtt ttggcagcgc cgaaatgcta
      601 ggaatcacgc ctgttttttc atgcgcatcg aagcgctttt gaggctgcat tttgaccgac
      661 attcccgaca cgctgaaccc gccggacggc ggcaatccgg tccagaccat cgcggtcgaa
      721 gacgagctga agcggtccta cctcgattat gcgatgagcg tgatcgtgca gcgcgcgctg
      781 cccgatgtgc gcgacgggct gaagccggtg catcgccgca tcctctattc gatgcacgag
      841 aacggctacg actggaacaa ggcctatcgc aagtccgccc gcgtggtcgg cgacgtgatc
      901 ggcaagtatc acccgcatgg cgaccagtcg atctatgacg cgttggtgcg tatggcgcag
      961 gaattctcca tgcgcgtgcc gttgatcgac gggcagggca atttcggctc ggtggacggc
     1021 gatccgcccg ccgccatgcg ttacaccgaa gtgcgccgcg ccaagatcgc gcatgcgttg
     1081 accgaggaca tcgacaagga caccgttgaa ttccgcgaca attacgacgg cacggaacgc
     1141 gagcccgcgg tgctgccgtc gcgctttccc aatctgctgg tcaacggctc ctccggcatc
     1201 gcggtgggca tggcgaccaa cattccgccc cacaatccgg gcgaagtgat cgatgcgtgc
     1261 ctggcctata tcgacgaccc ctccatcaac ctggaacggc tgaccgaaat cgtgccgggg
     1321 ccggactttc ccaccggcgc acttctgatc ggcaagcaaa atgcccgtgc cgcgctggcg
     1381 cggggccgcg gcggggtcct gatgcgggcg cgctgcgcgg ttgaggaaat ccgcaaggac
     1441 cgcgaagcca tcatcgtcac cgaactgccc tatcaggtga acaaggcgat gctgatcgag
     1501 cgcatcgccg agctggtgcg cgacaagaag atcgaaggca tctccgatat ccgcgacgag
     1561 agcgatcgtt ccggtatgcg catggtgatc gagctcaagc gcgacgcctc cagcgaagtg
     1621 gtgctgaacc agctttatcg tttctccaat ctgcagatga gcttcggcgt caacatgttg
     1681 gccctgaatg acggccggcc ggtgcagatg aacctgaagg acatgctggg ggcctttgtc
     1741 aatttccgcg aggaagtggt cacccgccgc accaagttcg acctgtccaa agcgcgggac
     1801 cgcggccatg tcttggtcgg cctggccgtg gcggtcgcca atattgacga agtcatccgg
     1861 ctgatccgcg ccgcgccgga cgccgcgacc gcgcgcgcgc aattgatgga ccgcgcctgg
     1921 ccggccaagg acgtcgcgcc gctggtggcg ctgattgccg acccgcgcca tcgcatggaa
     1981 gcgggtgaaa ccatccggct gtccgaggag caggccaagg cgatcctgga cttgcgcctg
     2041 cagcgcctga ccgccctggg ccgggacgaa atcaatgacg aggcgcagaa gctgggcctg
     2101 gcgatcgctg attatctcga catcctgtcg tcgcgcgggc gggtgctgat catgatccgc
     2161 gacgagctgg gggccattcg cgatgaattt gccaccccac gcaagacaga gttgatcgac
     2221 gccgagaccg agatggaaga cgaggcgctg atcgagcgcg aggacgtcgc cgtcaccgtc
     2281 acccataacg gctatatcaa gcgcacgccc ctggccgaat accgggtgca ggggcgcggc
     2341 ggcaagggcc gctcgggcat ggcgacgcgg gacgaggatt tcgtcaccag cctgttcgtg
     2401 gcctccagcc atgcctggct gctgttcttc tcctccaccg gcatggccta caagctcaag
     2461 gtctggcgct tgcccgaagc gcgcatcgcc ggcaagggca aggcgatggt gaacctgttg
     2521 ccgctggcgc aaggcgagcg catcaccacc atcctggcgc tgccggaaga cgaaaccgaa
     2581 tgggacaagc tgaatgtcgt cttcgccacc aagtcgggtg acgtcaggcg caaccagctg
     2641 tcggatttcc agcaggtcaa caagaacggc aagatcgcca tgaagctggc gccgggcgat
     2701 ggcattatcg gcgtcgccac ctgcaccgat gcggatgact tcctgctcac cagccggggc
     2761 ggcaaggcga tccgcttccc ggtcgccgat gtgcgggtct tcaagggccg cgactccacc
     2821 ggcgtgcgcg gcatcaagct gggtgccagc gatgcggtgg tgagcctggc gttgctctat
     2881 cattccgacg ccacctccgc cgaggcccgc gcctatctca agcaggccag cgccgcgcgc
     2941 cgcgccgaaa gcggtgaagc cgaagcgcct gtggaggccg aagacttatc ctctgaagag
     3001 ggggcagagg agggcgtcga agaagccacc ctgacgccgg aacgctatgc gggattgggc
     3061 gcgcgcgaac agttcgtgct caccatgtcg cagaccggct ttggcaagcg cagcagctcc
     3121 tacgaatatc gcgtcaccgg ccgcggcggc tcgggcatcg tcgccatcgg catgggtaag
     3181 aagaacagcg ccgtgatcgg atccttcccg gtggaagact ccgacgacct gatgctgatc
     3241 tctgacgctg gccagaccat tcgcgtcgcg gtgtcgggca tttccattca gggccgcgcc
     3301 gcccaaggcg tcaccgtgtt ccgggtggac gagggcgagc gggtggtgtc ggtggagcgt
     3361 atcgccgatg tcggcgaggg cgaatgaccg cacctgtgaa aaagcagcgc accggtctgt
     3421 atcccggcac cttcgatccc gtcaccctgg gccattgcga catcatcaag cgggccgtga
     3481 agctggtgga tcacctggtg atcggcgtgg ccaccaatgc cgccaaagcg ccgctgttca
     3541 cgctggatga gcgtgtggcg atggtaaagt ccgaggcaga gcggctggcg gcggggcacg
     3601 cgaccatcga cgtggtgccg ttcagttccc tgctggtgaa attcgccgcc caggtcggcg
     3661 cctcggtgat catccgcggc ttgcgggcgg tgtccgactt tgaatatgaa ttccagatgg
     3721 tggcgatgaa ccagcgcctg aacaccgaga tcgagactgt cttcctgatg gccgatccgc
     3781 gccaccaggc gatctcttcg cgattggtca aggaaatcgc tctgttgggc ggcgacataa
     3841 cgcccttcac cacgcccgcg gtcgcggcag ctctcgtcaa acgttgcaag gaaaagacct
     3901 aatggccgac tatctcattc tcgacctcaa agacggaccg gtgaagatca agctgcgcgc
     3961 cgacctggcg cccaatcatg tcgagcgcat caagacgctg gcgaacaagg gcttttatga
     4021 cggggtggtg tttcaccgcg tcattcccgg cttcatggcc cagaccggcg atcccaccgg
     4081 caccggcagc ggcggttcgg atctgcccga cctcaaggcg gaattctcgg gcgagaagca
     4141 taagcgcggc acggtgtcgg cggcgcgcag tggcaatccc aacagcgcca acagccagtt
     4201 ctatatctgc ttcaccgacg cgccctggct ggaccggcaa tattcggtat ggggggaagt
     4261 gaccgaaggc atggacaatg tcgacaagat caagaagggc ggcgagcaca ataacggcac
     4321 catcagcggc gaccccgaca agatcctcaa ggcccatatc gaagccgaat aggagcatcg
     4381 gccaggcgag cgaagtggtc gttagcgaca gcgtagcgcg acgtcggccg tgcgaccatt
     4441 ggaaaagcgc aacaattggt gtgtggcgcc ggcgcgagcc ggtatcctag aaccgtggct
     4501 tgagcgcagg agctgtcgtg gccgatccca ttcccctgat tgatctgcaa gcccagcgcc
     4561 gccgcctggg cgcgccgctg gaggccgcca tcaaggccgc tatcgagggt gggcaatgga
     4621 tcctggggcc gcaggtggcg cagtttgaga aggacatcgc ggcctgggcg ggggtaaaac
     4681 acgccatcgc ctgcgccaac ggcactgatg cgctgctgct ggtgctgcgc gcctggggcg
     4741 taggcccggg tgacgcggtg ttcgtgccgg ccttcacctt cgcggcatcc gcggaagtgg
     4801 tggcgctggc cggcgcctcc cccgtgttcg tggatgtgtt gtccgacacg ttcaacatgg
     4861 acccggccag cctggaagcc gccatcgcgc tagtgaaaca ggagggcaag gtgacgccca
     4921 aggtggtgat gccggtggac ctgttcggcc agcccgccga ttacgcggcg ctggcgccca
     4981 tcgcaaaaag cgaagggctc aaattgttct gcgacacggc gcagggtttc ggcggattgc
     5041 tggacggcaa acgggcgggc gctatcggcg acgcggcggc aaccagtttc tttcctgcca
     5101 agcccttggg ctgttatggc gatggcggcg cctgtttcac caatgacgac gcgctcaagc
     5161 atctgctgct cagcctgcgc atgcacggcc agggcgagga tcgctatgag catgtgcgcg
     5221 tcggttataa ttcccggctg gacaccatcc aggcggcaat cctgatcgag aagctgaaaa
     5281 tcttcgacga cgaaatcgag aagcgcaatg tggtggccca gcgctacaat gaagcgtttg
     5341 cgggatccaa tcgcatcaag acgccggtgg tgatcgcggg cgccacctcg acctgggcgc
     5401 aatacacctt gcaggtgacc gaccgcgcca aattccaggc cgacttgaaa gcggcgggcg
     5461 tgccgacggc ggtctattat ccgatccccc tgtcccagca gcgggcctat gcccactatc
     5521 ccagtgcccc cacaccggtc agcgcggcgc tgtgcggcca tgtcgtgagc ctgccgatgc
     5581 atccctatct ggatgaaacc acgcagaacc gcgtcattgc cgccgttctc gcaagtgcgg
     5641 gataaagttc cgccttccgc gacgtcctgc cgcaggccta tactttcgcc actggtacag
     5701 gtccacgggt tcgccgtgac cgacgtcgcc cttttttcgt gaaccctcat gaaaggaggc
     5761 tgccgccagg ccaaggcgcg ccccgcaaag ctacgggaga gacgccatga ccatccgaaa
     5821 ccctattgag tggagcggcg cgcagctggt ttcagcggcg catgccgccg acgcggtcgg
     5881 gcgctccatc gatcacatgc gcaacacggc gcattcgccc gcccccgcga tccggcacat
     5941 caagaacagc gatgtctggc aatcgctgcg ccagggcttc tccgacttcg aggcctatcg
     6001 cagcgacgtg attttcctct gcgtcatcta tgccgttgtc gggctggtga tggcgcgagt
     6061 ggctttcggc gccaatttgt tgccgctgct gttcccgctg gcgtctggct tcgccatcat
     6121 cgggcctttg tcggcggtgg ggttgtatga aatgagccgg cggcgcgagc aaggcgccga
     6181 ggtcggctgg gccaatgcct tcgacgtgct gaag
//
LOCUS       DATMDK010000466         3471 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1367189,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000466 DATMDK010000000
VERSION     DATMDK010000466.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3471)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3471)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3471
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1367189"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..578)
                     /locus_tag="VNN98_08950"
     CDS             complement(<1..578)
                     /locus_tag="VNN98_08950"
                     /inference="COORDINATES: protein motif:HMM:NF015056.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016811 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds, in linear amides
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetamidase/formamidase family protein"
                     /protein_id="HWM62269.1"
                     /translation="MMRYWGVAAMLLLADGAQAATYTLKATPATVAWGNYDAKAKPVL
                     TIQSGDTVVIDTLITNSPAGLEKNGVAPADVQQSLRDVYDQVKDRGPGGHILTGPIAI
                     AGAAPGDTLEVRIQKIDPAIAYAYNGFRYGVGVLTDDYPYARTKIIPLDRKAGVAHFR
                     PGIDIPMRPFFGSMGVAPPEGFGRYSSVPPTI"
     gene            complement(647..1000)
                     /locus_tag="VNN98_08955"
     CDS             complement(647..1000)
                     /locus_tag="VNN98_08955"
                     /inference="COORDINATES: protein motif:HMM:NF018893.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1428 family protein"
                     /protein_id="HWM62270.1"
                     /translation="MAYVDGFVIPVPAEKLDAYKAQATLCAQVWKEHGALASVECIGD
                     DVPYGTLTSFPRAVQAKEDEIIVFSWIVYESRASRDAVMEKVMADPRLKAMMENHAFD
                     GKRMIFGGFQPFLGL"
     gene            complement(1126..1482)
                     /locus_tag="VNN98_08960"
     CDS             complement(1126..1482)
                     /locus_tag="VNN98_08960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012478908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1428 family protein"
                     /protein_id="HWM62271.1"
                     /translation="MAYVDGYVVAVPKGKLDAYKQMARESETIWKEFGATNFVECVGD
                     DTPYGEVTSFPRAVQAKDDETVIFSWIVYPSKETRDAANKKVMEDPRLKKMMENAPFD
                     GKRMIFGGFQPFLGLN"
     gene            complement(1595..2806)
                     /gene="odhB"
                     /locus_tag="VNN98_08965"
     CDS             complement(1595..2806)
                     /gene="odhB"
                     /locus_tag="VNN98_08965"
                     /EC_number="2.3.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005400412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045252 - oxoglutarate dehydrogenase
                     complex [Evidence IEA];
                     GO_function: GO:0004149 - dihydrolipoyllysine-residue
                     succinyltransferase activity [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate dehydrogenase complex
                     dihydrolipoyllysine-residue succinyltransferase"
                     /protein_id="HWM62272.1"
                     /translation="MTIEIKVPAMGESVTEATISKWFKKEGDAVKRDEPLLELETDKV
                     TVEVPSPADGAIESISAQQGATVQVGALLGAIAEGKAGVAPKAAAPKAEAPKPAPAPV
                     AAPKAESPAMPSAKRIAEETGIALATVAGTGKDGRVTKGDMLSALSARSAAPVAAAPP
                     SPISTGPRHNEAREERVPMTRLRKTIALRLKESQNTAAQLTTFNEVDMTAVMALRTAY
                     KDVFEKKHGVKLGFMGFFTKAVVAALKELPNVNAEIEGDNIVYKNYYDIGVAVSTERG
                     LVVPVVRDADHLSLAAIEKAIMDFGMRARDNKLKLEELQGGTFSITNGGVFGSLMSTP
                     ILNSPQSGILGMHKIQPRPMAIGDKIEIRPMMYLALSYDHRIVDGREAVTFLVKVKDN
                     LEDPQRMLLDI"
     gene            complement(2816..>3471)
                     /locus_tag="VNN98_08970"
     CDS             complement(2816..>3471)
                     /locus_tag="VNN98_08970"
                     /inference="COORDINATES: protein motif:HMM:NF028180.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="2-oxoglutarate dehydrogenase E1 component"
                     /protein_id="HWM62273.1"
                     /translation="HSSARLERYLQLCAQDNMQVCVPTTPANYFHILRRQMHRSFRKP
                     LIVLTPKSLLRHKKCVSFLSDMTPGTSFHRVLRDQAEAVPGATTVQLVPDGEIKRVVL
                     CTGKVYFDLMEEREKRGENRIQILRIEQLYPFPENVLAQELNRFPKAELVWCQEEPRN
                     QGAWNFIKPRIEDTVTKLGGKGSPRYAGRPEYASTAAGLMKQHLAELAAFLNEALSF"
BASE COUNT          625 a         1050 c         1087 g          709 t
ORIGIN      
        1 ttgatggtgg gcggcaccga actgtagcgg ccaaaacctt ccggcggcgc cacgcccatc
       61 gagccgaaga agggccgcat cgggatgtcg atgcccggcc tgaaatgagc cacccccgcc
      121 ttgcgatcca gaggaatgat cttggtgcgg gcataagggt aatcgtcggt caacacgccc
      181 acgccgtagc gaaagccgtt ataggcatag gcaatggccg gatcgatctt ctggatccgc
      241 acttccagcg tgtcgcccgg cgccgcgccc gcgatggcga tggggccggt cagaatgtgg
      301 ccgccgggcc cgcgatcctt tacctggtca tagacgtcgc gcaggctctg ctgcacatcg
      361 gcgggcgcga cgccgttctt ttccagcccg gcgggcgagt tggtgatgag cgtgtcgatg
      421 accacggtgt cgccggactg gatcgtcagc accggcttgg ccttggcatc gtaattgccc
      481 caggccaccg tggcgggcgt cgccttcagc gtataggtcg ctgcctgcgc cccatccgcc
      541 agcagcagca ttgccgcaac gccccaatat cgcatcatga cccagcctcc ctgtctgctc
      601 aagcaaacca tagacgagcg gggcccggga gtcggccagg cgtggcttaa agccccagga
      661 agggctggaa gccgccaaag atcatgcgct tgccgtcgaa agcatggttt tccatcatgg
      721 ctttgagacg cgggtcggcc atgacttttt ccatgacggc atcgcggctg gcgcgggatt
      781 catagacgat ccaggaaaag acgataattt cgtcttcttt ggcctgcacc gcgcggggaa
      841 acgaggtcag ggtgccgtaa ggcacatcgt ctccgataca ttccaccgac gccagcgcgc
      901 cgtgttcttt ccagacctgg gcgcacagcg tggcctgcgc cttgtaggcg tccaactttt
      961 ccgccggcac ggggatcacg aaaccatcga cataagccat gtctgtctcc ttgaggattt
     1021 tcccaaggac gatagaccgg gcatcgcacc gacggcgagg cgaaaataga taggtgtcct
     1081 agccgtccgc actgccgcta cagactactt ctcgcgcctg caggcttagt tcaagcccaa
     1141 aaagggctgg aagccgccga agatcatccg cttgccgtca aagggtgcgt tttccatcat
     1201 ctttttcagc cgcggatctt ccatgacctt cttgttggcc gcgtcgcggg tttccttgga
     1261 tggatagacg atccaggaaa agatcacggt ttcgtcatcc ttggcctgca ccgcgcgggg
     1321 gaatgaggtc acttcgccat agggcgtgtc gtcgccgacg cattccacaa aattcgtggc
     1381 gccgaattcc ttccagatcg tttcggactc ccgcgccatc tgcttgtagg catccagctt
     1441 gcctttggga accgcaacta cataaccgtc aacataggcc atggctctct ccttttggat
     1501 atcaccaaag gacgccagac gcgggatggt tccgacagaa tgcgaaaata aagagacggt
     1561 ctttgagacc ccgtcttagc gaggttccgg gaactcagat gtccagcaac atgcgctgcg
     1621 ggtcttccag attatccttg accttgacca ggaaggtgac cgcctcgcgg ccgtccacga
     1681 tgcggtgatc gtagctcagc gccaggtaca tcatggggcg gatttcgatc ttgtcgccta
     1741 tcgccatggg gcgtggctgg atcttgtgca tgcccaggat gccggactgg ggcgaattca
     1801 ggatcggggt ggacatcagc gagccgaaca cgccgccatt ggtgatggag aaagtgccgc
     1861 cctgcagttc ttccagtttc agcttgttgt cgcgggcgcg catcccgaaa tccatgatgg
     1921 ctttttcgat cgccgccaag gacaggtggt cggcatcgcg caccaccggc accaccaacc
     1981 cgcgctcggt cgaaaccgcg acgccgatgt cgtagtaatt cttgtagacg atattgtcgc
     2041 cttcgatttc ggcgttgacg ttgggcaatt ctttcagcgc cgccaccacc gccttggtga
     2101 agaagcccat aaagcccagc ttgacgccat gcttcttctc gaacacgtcc ttgtaggcgg
     2161 tgcgcagggc catcaccgcc gtcatgtcca cttcgttgaa ggtggtgagc tgggcggcag
     2221 tgttctggga ttccttcagg cgcagcgcaa tggtcttgcg cagccgcgtc atcggcacgc
     2281 gttcctcgcg cgcctcattg tggcgcgggc ccgttgaaat aggagagggg ggggcagcag
     2341 ccaccggcgc cgcggagcgc gccgaaagcg cgctcagcat atcgcccttg gtcacgcggc
     2401 cgtctttgcc ggtgccggca acggtggcga gggcgatacc ggtttcctcg gcaatgcgtt
     2461 tggccgacgg catggccggg gattcggctt tgggagccgc cacaggagcg ggagccggct
     2521 taggtgcttc ggctttcgga gctgcggctt tgggcgccac gccggccttg ccttcggcaa
     2581 tggcgccgag cagcgcgccg acctgcacgg tggcgccctg ctgggcgctg atggattcaa
     2641 tggcaccatc ggcgggcgag ggcacctcca ccgtgacctt gtcagtctcc agttccagca
     2701 agggctcgtc gcgtttcacc gcgtcacctt ccttcttgaa ccatttggag atggtggctt
     2761 cggtgacgga ctcgcccatc gcaggcactt tgatttcaat ggtcatgggg tgctcttaaa
     2821 aggagagggc ttcgttgagg aaggcggcca gttcggccag atgctgtttc atcaggcccg
     2881 ccgcggtgga ggcatattcc ggccgcccgg catagcgcgg gctgcccttg ccgcccagct
     2941 tggtgacggt gtcttcgatg cgcggcttga tgaagttcca ggcgccctga ttgcggggct
     3001 cttcctggca ccagaccagt tcggccttgg gaaagcggtt gagctcctgg gccagtacat
     3061 tttccggaaa gggatagagc tgctcaatgc gcaggatctg gatgcggttc tcgccgcgct
     3121 tctcacgctc ttccatcagg tcgaaataga ccttgcccgt gcacagcacc acacgcttga
     3181 tctcaccatc gggcaccagc tggacggtgg tggcgccggg cacggcttcg gcctggtcgc
     3241 gcagcacgcg atggaacgag gtgcccggcg tcatgtccga caggaagctg acgcactttt
     3301 tatgacgcag cagcgacttg ggcgtcagca cgatcagggg cttcctgaag ctgcgatgca
     3361 tctggcggcg caggatgtgg aagtagttgg ccggcgtggt cggcacacag acctgcatat
     3421 tgtcctgggc gcaaagctgc aggtaacgct ccagccgggc ggaggaatgt t
//
LOCUS       DATMDK010000467         8088 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1368576,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000467 DATMDK010000000
VERSION     DATMDK010000467.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 8088)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8088)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8088
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1368576"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..559)
                     /locus_tag="VNN98_08975"
     CDS             complement(<1..559)
                     /locus_tag="VNN98_08975"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM62274.1"
                     /translation="MKLRILLLALLLAAPAQAAVTKLTVEKTSPMAGGYELLEGHFSG
                     ALDPADKHNALINDIKLAPRNAAGKVEYSATFAIARPLGQMSGVLVYDVPNRGKGAAT
                     AIGDGHVDVVSGWQGDLEEGPGVQLIHVPAAPVTGPALVRFMNMPAGTTTMSVKGGPQ
                     GNQGGRSFDVATASGARLYTDTSDDR"
     gene            complement(625..1464)
                     /locus_tag="VNN98_08980"
     CDS             complement(625..1464)
                     /locus_tag="VNN98_08980"
                     /inference="COORDINATES: protein motif:HMM:NF012472.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HWM62275.1"
                     /translation="MPKTFQIGGEISINRLGFGAMQITGPGVWGPPRDAGEAIGVLKR
                     LPELGVNFVDTADSYGPDVSEQLIAKALHPYDGLLVATKAGFTRSGPHQWRVDCRPEH
                     LIASAHKSRRQLGVDQIGLWQLHRIDSKVPCAEQFGAVKQLLDESVIRHAGLSEVSVA
                     EIKAASQVFRVTTVQNSYNLADRDSDDVVDYCEANGIGFIPYYPLGDGALAQPGGALD
                     KVAKAKGATPGQVALAWLLKRSPVMLPIPGTSKVAHLEENMGAAAISLTDAEFASLDR
                     KRR"
     gene            complement(1474..2928)
                     /locus_tag="VNN98_08985"
     CDS             complement(1474..2928)
                     /locus_tag="VNN98_08985"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HWM62276.1"
                     /translation="MPESGAPKPHFRTIALIVGAAMFMEQLDGTVLATALPSMARELG
                     VSAPSLSIALTSYLISLAIFIPVSGRIADRFGARTVFRTAIIAFILGSIACAQAPSVG
                     FLVAARFFQGVGGALMLPVGRLVLMRSVEKRDLIQATSWVLIPAVIGPILGPPVGGFI
                     VTYLNWRWIFYINVPIGILGVILVSLFIANSRGEVPEKTDYKGIVLSSLSLGLLLFGF
                     ELTSHDGQLYRALSLLAVGAVLGSLYIRHARITRDPILDISLMKIPTYGTSVIAGAIT
                     RVTQGAHPYLLPLMMQLGFGLSASQSGLMTIGTAIGSIIAKPFAPKLLRRFGFRDTLM
                     VNGVFASAGYAICGLFRPGWPLPVMFLVMMTSGFFMSIQFTGYNTIAYDEIAQERMGS
                     ATSFYTTFQQLMLSMGICAGAAALQGAMVLGGHVLPRFADFTAAFWTVALISLSATIW
                     NRRFSHEAGTEISGHTPRTWSTRQVIKEPRGLNS"
     gene            3198..3584
                     /locus_tag="VNN98_08990"
     CDS             3198..3584
                     /locus_tag="VNN98_08990"
                     /inference="COORDINATES: protein motif:HMM:NF039364.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6165 family protein"
                     /protein_id="HWM62277.1"
                     /translation="MSIPHIPTSWGELIDKITILEIKVERLTAEQARANAAKELGLLR
                     EIAGPVLGKGETAMLTARLKALNETLWEIEDCIRDHERSGCFDQAFVELARSVYKRND
                     ERGAVKREINLALGSELVEEKSYKPY"
     gene            complement(3581..5008)
                     /locus_tag="VNN98_08995"
     CDS             complement(3581..5008)
                     /locus_tag="VNN98_08995"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HWM62278.1"
                     /translation="MAQADNPIQGGVVGSAAERIDSGERLLDQGDAARALAAFEQALA
                     FGTDFTALVGRGVALQMLGRDGEALADFEAALRLKPDDIAAIANRGNALQDLGRHAEA
                     LESFDRALALRPGFARVLYSRSNVLQEMNRFNEALAGYGQVLAQDPADVAALNNRGNT
                     FIKMRRHSDALADFDAALALQPDFSYALYNRGRALCESGNIAQGLADFQRAAVIFGKH
                     GTAGAAAPHKARHDAEQQAWLAAAGISTPVTGPLHVEAGARLAGPAINRANGAEAGRA
                     WRQSDPQLVVIDNLLTPEALAALRRFCWESTIWRKSYSRGYLGAFPESGFACPLLAQI
                     AEEFRTVFPDIFGAHPLVYLWAFKYDNRLRGIEVHADQAAVNVNFWIAPDEANLDLDH
                     GGLVVWDKAAPLDWDFAKFNADIPAARDFLERSGARPVTIPHRANRAVIFDSDLFHET
                     DAIAFREGYENRRINCTLLYGFRDA"
     gene            complement(5242..5787)
                     /locus_tag="VNN98_09000"
     CDS             complement(5242..5787)
                     /locus_tag="VNN98_09000"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM62279.1"
                     /translation="MTRQIRATSLALIILAAATAARADNSMPDMPAAPTAPPSQGQAI
                     LAKIQTLYGTWDSPATGITDIFKPFALGTAVLGEEWKGGKQITATVFYVVNGELRADH
                     YCDYLNQPRYTAMPSSDPAMIDLEFREATNLDTHPVHFHSTQWRIVDAQHLIQDWYVV
                     GGKKPVSLVHMEFTKRADNPA"
     gene            complement(5856..6158)
                     /locus_tag="VNN98_09005"
     CDS             complement(5856..6158)
                     /locus_tag="VNN98_09005"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM62280.1"
                     /translation="MKRLICATLALSLLGATAASAQSFHGGFGHGGYSHGGGYGGWHG
                     RGDGGALIGLGVGLFALGAIAAASQHDRNEGRYYDRYDYGPPPPPPPAYYGRGYGY"
     gene            complement(6327..>8088)
                     /locus_tag="VNN98_09010"
     CDS             complement(6327..>8088)
                     /locus_tag="VNN98_09010"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HWM62281.1"
                     /translation="SYFQHGESDTSIKLENMPLSGAPLVGGTATTAGATNNQFSRFNL
                     AQDAVVNSAGQIVCRNTVAQAYGCVPFNPFGGGTVTPGQLAYFDGQNVPGGTTVGPSA
                     IQTQRQEAFSFNVNGSPIEDWAGPVAVALGYEYREEHYSQRADPYSAGVSSSTPATVN
                     EPCTDPFIDCGQTSVGSLGAWNAGNYHNGAGTYHVNEVFLEVGVPLLNDSFWGKADLD
                     VAGRHARYSTAGDANTWKVGVTWDTPIPGVRLRALQSRDIRAPNLSELFSPPQGLNGS
                     INNDFTGVQTQNVRQLNVGNPLLKPEKAQTTEVGLVWQPDFIPGFQASIDYYRIGVKG
                     AIQSLTLQQVEDQCFNGFTAYCAQDQITTANGVNQSAAAPGAAGTANAIQSVSSKAFN
                     AASLLTDGFDLEASYQFDLQDFDVPGSFTLRSLINHTSKFISDTGIIGTQRNTELAGA
                     VGGGGNSQTYNQSGGNVLNWKLQETQSYQNDVWGFNLTERWYSGGVFTPNRNTLVCAP
                     GTCPVPTTQTPTINFDKVDAILYLDVGANWNVSDKTQLYAKVDNAANTRPPDTGLDRS
                     NNTLYDVIGRMYRVGVRFSN"
BASE COUNT         1541 a         2446 c         2625 g         1476 t
ORIGIN      
        1 gccggtcgtc ggaggtgtcg gtgtaaagcc ttgcgccgct ggcggtggcg acatcgaaac
       61 tgcgcccgcc ctggtttccc tgcggcccgc ccttgaccga catggtggtg gtgccggcgg
      121 gcatgttcat gaatcgcacc agggccggtc cggtgacagg cgcggccggg acatggatca
      181 actggacacc cggcccctct tccagatcgc cctgccagcc gctgaccaca tcgacatggc
      241 cgtcgccgat ggcagttgcc gcgcccttgc cgcgattggg aacgtcgtac accagcacgc
      301 cggacatctg gcccagcggc cgggcgatgg cgaaggtggc ggaatattcc actttgcccg
      361 ccgcattgcg cggcgccagc ttgatgtcgt tgatcagggc attgtgcttg tccgccgggt
      421 ccagcgcgcc gctgaaatgg ccttccagca attcatagcc gcccgccatg ggcgaggtct
      481 tttccaccgt cagtttggtg actgcggctt gcgccggcgc cgccagcaac aaggccagca
      541 gaaggatcct gagcttcatg tcccaccctt tttttggggc ggtccggctt tgcccaacgc
      601 cccatatttt gggcggagca tagctcagcg gcgtttgcgg tccaatgagg cgaattccgc
      661 atcggtcagg ctgatagcgg ccgcgcccat attctcttcc agatgcgcca ctttcgaggt
      721 gccgggaatg ggcaacatga cgggcgaacg tttgagcagc caagccaggg ccacctgccc
      781 cggggttgca cccttggcct tggccacctt gtccagggct ccgcccggct gcgccaacgc
      841 accatcgccc agcggataat agggaataaa gccgatgccg ttggcttcgc aatagtccac
      901 cacatcgtcg ctgtcgcgat cggccaggtt gtagctgttc tgcaccgtgg tgacgcggaa
      961 cacctgcgac gccgccttga tctcggctac tgaaacttcc gacaagccgg catggcggat
     1021 cacactttcg tccagaagct gcttgaccgc accgaactgc tcggcgcacg gcaccttgga
     1081 atcgatgcga tgcagctgcc acaacccgat ctgatctacc cccagctggc ggcggctctt
     1141 gtgcgcgctg gcgatcagat gttcggggcg gcaatcgaca cgccattgat gcggcccgct
     1201 acgggtgaag ccggccttgg tggcaaccag cagcccgtca tagggatgca gcgccttggc
     1261 aatcaattgc tcggaaacat cggggccata agagtcggcg gtgtcgacga agttcacgcc
     1321 cagttcgggc aagcgtttca ataccccgat cgcttcgccc gcatcgcgcg gcggacccca
     1381 tacaccgggc ccagtgatct gcatggcgcc gaaacccagc cgattgatcg aaatttcgcc
     1441 gccgatctgg aatgtcttgg gcatgcaaat gtcctaggaa ttgaggccgc gcggctcctt
     1501 gatcacctgg cgggtagacc aggtacgcgg ggtgtggccg ctgatctcgg tgccggcttc
     1561 gtggctgaaa cgccggttcc agatggtggc gctgagcgaa atcagcgcca cggtccagaa
     1621 ggcggcagtg aaatcggcaa agcgtggcag gacatggccg cccagcacca tggcgccctg
     1681 cagcgccgcc gcgccggcgc agatgcccat cgacaacatc agctgctgga aagtggtgta
     1741 gaagctggtg gccgagccca tgcgctcctg cgcgatctcg tcataggcga tggtgttgta
     1801 gccggtgaac tgtatcgaca tgaaaaagcc gctggtcatc atcaccagaa acatcaccgg
     1861 caacggccag ccgggacgaa acagcccgca tatcgcatag ccggcgctgg cgaagacgcc
     1921 gttgaccatc aacgtgtcgc gaaaaccgaa ccgccgcagc agctttggtg cgaagggttt
     1981 ggcgatgatg gagcctatgg ccgtgccgat cgtcatcaat cccgattgcg acgccgacag
     2041 gccgaagccc agctgcatca tcagcggcag cagataggga tgggcgccct gggtaacgcg
     2101 ggtgatggcg cccgcgatca ccgaggtgcc gtaggtggga atcttcatca gcgaaatgtc
     2161 gaggatgggg tcgcgggtaa tgcgcgcgtg gcggatgtaa aggctgccca gcaccgcccc
     2221 caccgccagc aagctcagcg cccgatacag ttgcccgtca tggctggtca gttcgaagcc
     2281 gaacagcaac agccccagcg acaggctgga caggacaata cccttgtagt cggttttctc
     2341 cggcacctcg ccgcgcgaat tggcgatgaa caggctgacc aggatcacgc ccaggatacc
     2401 gataggcacg ttgatgtaga atatccagcg ccagtttaga taggtgacga tgaagccgcc
     2461 caccggcggg cccaggatag gcccgataac ggcggggatc agcacccagg aggtggcctg
     2521 gatcaggtcg cgcttttcca cgctgcgcat caaaaccagc cgccccaccg gcaacatcag
     2581 cgccccgccg acgccctgga agaatcgcgc cgccaccagg aacccgacgc tgggggcctg
     2641 ggcgcaggcg atggagccca ggatgaaagc gatgatggcg gtgcggaaca cggtgcgggc
     2701 gccgaagcgg tcggcgatgc gcccggacac cggaatgaag atcgccaggc tgatcagata
     2761 ggaggtcagg gcgatggaaa ggctgggggc ggaaaccccc aactcgcgcg ccatgctggg
     2821 cagggcggtg gccagcaccg tgccgtccag ctgctccatg aacatggcgg cgccgacgat
     2881 cagggcgatg gtgcgaaaat ggggctttgg ggcgccggat tcgggcatga cccaacccgt
     2941 ttaggctccg catctgccgg gcgcaagggc gcgatttagc gcggaattga gggccatttc
     3001 gctgcttttt gaccctatcg cgacgcgctg gcgaatcagc cgggcgcgcc gggacgtccg
     3061 ttttgggccg ccttgaaacc gatgccggac tggttctggg ccgcggcggc aacccgtgat
     3121 atccctgcgc gaaattatcc ggcacgaaga cgtaagggcg actgggccaa ggtctttgcc
     3181 gaaatgcagg tgccccgatg agcattcctc atatacccac ctcctggggc gaattgatcg
     3241 acaagatcac cattctggag atcaaggttg aacggttgac ggccgaacag gccagggcca
     3301 atgccgccaa ggaactgggc ctgttgcgcg agattgccgg accggtgctg ggcaaaggtg
     3361 agacggcgat gctgacggcg cggctcaagg cgctgaatga aacgctgtgg gagatcgagg
     3421 actgtatccg cgatcacgaa cgctccggct gtttcgacca ggctttcgtg gaactggcgc
     3481 gatcggtcta caagcgcaat gacgagcgcg gcgcggtgaa gcgggaaatc aacctggcgc
     3541 tgggttcgga attggtcgaa gaaaaaagct acaagcccta ttaggcgtca cgaaagccgt
     3601 agagcaaggt gcaattgatc cgccggtttt catagccttc acggaaggcg atcgcgtctg
     3661 tctcgtggaa caggtcagaa tcgaagataa ccgcgcggtt ggcgcgatgg ggaatggtca
     3721 cggggcgcgc acccgaacgc tccaggaagt cgcgcgcggc gggaatgtcg gcgttgaatt
     3781 tggcgaaatc ccagtccagc ggcgcggcct tgtcccacac caccagcccg ccatgatcga
     3841 ggtcgaggtt ggcctcgtcc ggcgcgatcc agaaattcac gttgaccgcc gcctggtcgg
     3901 catggacctc gatgccgcga agccggttgt catatttgaa ggcccacaga tagaccagtg
     3961 gatgtgcgcc gaaaatatct ggaaacacag tgcgaaattc ctcggcaatc tgcgccagca
     4021 gggggcaagc aaagccgctt tccgggaatg cgccgagata gccgcgcgaa tagcttttac
     4081 gccagatggt ggattcccag cagaagcgcc gcagcgcggc caaggcttcc ggcgtcagca
     4141 aattgtcgat caccaccagc tgcggatcgc tttgccgcca ggcgcgcccg gcctctgcgc
     4201 cattggcacg attgatcgcg ggaccggcca ggcgcgcacc ggcttcgaca tgcaatgggc
     4261 cggtcaccgg cgtcgaaata cctgccgccg ccaaccaagc ctgttgttct gcgtcatggc
     4321 gcgctttgtg cggcgccgcg gcgccggcgg taccgtgttt tccgaaaatg accgctgccc
     4381 gctgaaaatc cgccaagccc tgcgcgatgt tgccgctttc gcataaggcc cggccgcgat
     4441 tgtaaagcgc ataggaaaaa tcgggctgca gcgccagggc agcatcgaaa tcggccaacg
     4501 catcgctgtg ccgccgcatc ttaatgaagg tattgccgcg gttgttcagc gccgccacgt
     4561 cggcgggatc ttgcgccagg acttgtccgt agccggccaa cgcctcattg aagcgattca
     4621 tttcctgcag gacattgctg cggctgtaaa ggacccgtgc gaaaccgggc cgcagcgcaa
     4681 gcgcgcggtc aaagctttcc agcgcttcag catggcggcc caggtcctgc agcgcattgc
     4741 cgcgattggc gatggctgcg atgtcatcgg gcttgaggcg cagtgccgcc tcgaaatcgg
     4801 ccaacgcctc gccatctcgg cccagcatct gcagcgccac accccggccg accagggcgg
     4861 tgaaatcagt tccgaaggcc agcgcctgtt cgaacgcggc cagcgcgcgg gcggcatcgc
     4921 cttggtccaa cagccgctcg ccgctatcga tacgttcagc agccgaaccc accacgccgc
     4981 cctggatcgg attgtcggcc tgcgccatga aaagccttca ctttcgtcac ttttatggct
     5041 ggcgacatcg cttggcgcaa gtgcaatgcg ctccttctag cgtggccatt tggataccga
     5101 cttctttgag ttgatgcccg atttatcgcc gcaatgatgg cgagatgcgc aggatcaaac
     5161 tggcgctggg ttccgggctg atcgaagaga agtgctatag gctctaccag caagcccggt
     5221 ttcggcgatg gtcgcggctc ctcaagcggg gttgtcggcg cgcttggtga actccatatg
     5281 taccagcgaa accggcttct tacccccgac aacataccag tcctgaatca gatgctgagc
     5341 atcgacaatc cgccattggg tggagtggaa atgtaccgga tgagtgtcga gattggtggc
     5401 ttcgcgaaac tccaggtcga tcatcgccgg gtcgctcgat ggcatggccg tgtagcgcgg
     5461 ttggttcaga tagtcgcaat aatgatccgc ccgcaactcg ccattcacga catagaacac
     5521 cgtcgccgtg atctgtttgc cgcccttcca ctcttcaccc agcactgccg tccctagggc
     5581 gaacggcttg aatatgtccg tgatgcccgt tgccggcgag tcccaggtcc cgtagagcgt
     5641 ctgaatcttc gccagaatcg cctgaccttg actgggcggc gccgtcgggg ccgccggcat
     5701 gtcgggcatg ctgttgtcgg cgcgggcggc ggtcgccgcg gcgagaatga tcagcgctag
     5761 gcttgtggcg cggatttgtc gtgtcatgag aacctgcaat ttgaaagcta gagaagaagg
     5821 accccggcgg atgccggggc ccttggccgt tctggttagt agccgtagcc gcggccatag
     5881 taagccggcg ggggcggcgg cggagggccg tagtcgtagc ggtcataata gcggccctca
     5941 ttacgatcat gctgggaggc cgccgcaatg gcgcccaggg caaacaggcc gacgcccagg
     6001 ccgatcaagg ctccgccgtc gccgcggccg tgccagccgc cgtatccgcc gccatggctg
     6061 tagccgccat ggccgaatcc gccgtggaaa gactgcgcgg aagcagcggt ggctcccagc
     6121 agcgacaagg caagagtggc gcaaatcaag cgtttcatgg ctttggtcct ttcgtcagcg
     6181 gcgcgaaagc cgcgtcgtta agacagacca tgacggcccg gccatgaacc gggtctgagg
     6241 cgaccattta tctgcggttc atatacgggg ccaaagaaaa agggctcccg ttgccgggag
     6301 cccctgttct tgtccgtgtg tgcttcttag ttcgagaagc gcacgccgac gcggtacatg
     6361 cggccaatca cgtcgtacag cgtgttgttg gagcgatcga ggccggtatc cggcggacgg
     6421 gtattggcgg cattgtcgac cttggcatag agctgggtct tgtcgctcac attccagttt
     6481 gcaccgacgt ccaggtacag gatcgcgtcc accttgtcga agttgatggt gggcgtctgg
     6541 gtggtcggca ccgggcaggt gccgggggcg caaaccagcg tgttgcggtt gggtgtgaac
     6601 acgccgcccg aataccaacg ttccgtcagg ttgaagcccc aaacgtcgtt ctggtagctc
     6661 tgggtttcct gcaacttcca gttcagcacg ttaccgccag actggttgta ggtctggctg
     6721 ttgccgccgc cgccgaccgc accggccagt tcggtgtttc gctgggtacc gatgataccg
     6781 gtgtccgaga tgaacttgct ggtgtggttg atcaacgaac gcagggtgaa gctgccggga
     6841 acatcaaaat cctgcaggtc gaactggtag cttgcttcca ggtcgaagcc gtcggtcagc
     6901 aggctggcgg cattgaacgc cttggacgaa accgactgga tcgcattggc cgtgccagcc
     6961 gcgccgggag cggccgcact ctggttcacc ccgttggccg tggtgatttg atcctgggcg
     7021 cagtaggcgg tgaagccatt gaagcactgg tcttcaacct gctgcagagt cagggactgg
     7081 atcgcgccct tcacaccgat gcggtaatag tcgatcgagg cttggaagcc cggaatgaag
     7141 tccggctgcc acaccaagcc gacttccgtg gtctgcgcct tttccggctt cagcaacggg
     7201 ttaccgacgt tgagctggcg gacgttctgg gtctggaccc cggtgaagtc gttgttgatt
     7261 gagccgttca ggccttgcgg cggcgagaac agttccgaca ggttgggggc gcgaatgtcg
     7321 cgggactgca acgcacgcag gcgaacaccg gggatcggcg tatcccaggt gacacccacc
     7381 ttccaggtat tggcgtcgcc agccgtgctg tagcgcgcat ggcggccggc aacatccagg
     7441 tcggccttgc cccagaagga gtcattgagc aacggaacgc ccacttccag gaacacttcg
     7501 ttcacatggt aggtgccggc gccgttgtga tagttgcccg cgttccaggc gcccagagaa
     7561 ccgaccgaag tctggccgca gtcaatgaat ggatcggtgc aaggttcgtt gacggtggcc
     7621 ggggtcgaag acgagacgcc ggccgaatag ggatcggcac gctggctgta atgttcttcg
     7681 cgatattcgt aacccagagc gaccgcgacc ggaccggccc agtcttcaat cggcgaaccg
     7741 ttgacattga agctgaacgc ttcctggcgc tgggtctgga tggccgacgg gccgacggtg
     7801 gtgccgccgg ggacgttctg gccgtcgaaa taggccagct gaccgggggt cacagtgccg
     7861 ccgccgaagg gattgaaggg cacgcagcca taggcctggg caacagtgtt gcggcaaacg
     7921 atctggccgg cgctgttgac caccgcatcc tgcgccagat tgaagcgcga gaactggttg
     7981 ttggtggcgc ccgccgtggt ggcggtgccg ccgaccagcg gcgcgcccga cagcggcatg
     8041 ttttcgagct tgatgctggt atcggattcg ccgtgctgga agtaggaa
//
LOCUS       DATMDK010000468         3334 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_904897,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000468 DATMDK010000000
VERSION     DATMDK010000468.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3334)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3334)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3334
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_904897"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..157)
                     /locus_tag="VNN98_09015"
     CDS             complement(<1..157)
                     /locus_tag="VNN98_09015"
                     /EC_number="2.6.99.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014605257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0033856 - pyridoxine 5'-phosphate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0008615 - pyridoxine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxine 5'-phosphate synthase"
                     /protein_id="HWM62282.1"
                     /translation="MTKLRLGVNIDHVATVRNARGGDNPDPVRAAILAAGAGADGITA
                     HLREDRRH"
     gene            complement(332..916)
                     /gene="pyrE"
                     /locus_tag="VNN98_09020"
     CDS             complement(332..916)
                     /gene="pyrE"
                     /locus_tag="VNN98_09020"
                     /EC_number="2.4.2.10"
                     /inference="COORDINATES: protein motif:HMM:TIGR01367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004588 - orotate
                     phosphoribosyltransferase activity [Evidence IEA];
                     GO_process: GO:0009220 - pyrimidine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="orotate phosphoribosyltransferase"
                     /protein_id="HWM62283.1"
                     /translation="MNVEQVLNEFKKSGALLEGHFILSSGLHSDKFLQKALVFQDAKR
                     TAKLCKALAAKVKKEVKEEITAIVSPAVGGIVPGYEMGRQMGLPAMYVERVDGEFQLR
                     RNFTLKKGQKVLMVEDIVSTGVSSRECIAAIKKTGAKVVAACCLIDRSGGSAKVGVPL
                     IALAEWKVQAWPADKLPPHLRNKPAVKPGSRGLA"
     gene            complement(1064..2119)
                     /locus_tag="VNN98_09025"
     CDS             complement(1064..2119)
                     /locus_tag="VNN98_09025"
                     /inference="COORDINATES: protein motif:HMM:NF040246.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RelA/SpoT AH/RIS domain-containing protein"
                     /protein_id="HWM62284.1"
                     /translation="MVDLLERGDSAEEVLEHSRLAMYQDQVFCFTPKGSLISLPRGAT
                     PIDFAYAVHTDLGNSAVGAKVNGNHVALHTPLKNGDQVEIIATKDASPSPMWEQFVVT
                     GRARAEIRRFLRHAQRDEHVRFGRKILEKAFADEGRELTDKAVGEVVKKLRLAKAEDV
                     YADVGRGALRGHEVLQAVFPELKRAGKVAKKSKPGEVKPISIRGLTEGISYNLGQCCH
                     PLPGDRIVGINTPGEGLVIHTIDCAELDSAHNMDDWLDVGWGQGASEMGLSVARIQVR
                     VKNAPGSLATVMTAIAANGGNIFNMKVTSRNPLFFEFIVDVEVRDVAHLQNILGALRV
                     SDAVESVDRVREAETVQ"
     gene            complement(2135..3289)
                     /locus_tag="VNN98_09030"
     CDS             complement(2135..3289)
                     /locus_tag="VNN98_09030"
                     /inference="COORDINATES: protein motif:HMM:NF024724.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing protein"
                     /protein_id="HWM62285.1"
                     /translation="MSPPTPVTSAEKPAKPVPAPTPVRGRRRLMRQADLVERVLAYDP
                     TADEALLNKAYVYAMTAHGKQFRASGDPYFAHPLEVAAILTDLKLDVPTIVTALLHDT
                     IEDTLVTYDDLRDKFGEEIANLVDGVTKLSQLEVFSERTKQAENFRKLMLAITSDNRV
                     LLVKLADRLHNMRTLGYIGKPDKRQRIAQEAVDIYAPLAGRIGMQNMREELEDLAFAE
                     LDPEARNSIVTHFARLDMVGGDRVGRIADQIKRRLAEHGMEAWVYGRGKRPFSIWRKL
                     QTKKLSFEQLSDIFGFRVIVGSAADCYAALGIIHTSWQMVPERFKDFISTPKPNGYRS
                     IHTTVIGPEKQRVEIQIRTQEMHDIAERGVAAHWRYREHVPEAGKEDSVT"
BASE COUNT          590 a         1062 c         1023 g          659 t
ORIGIN      
        1 tgtggcggcg gtcttcgcgc agatgcgccg tgatgccgtc ggcgcccgcg cccgctgcca
       61 ggatggcggc ccgcaccgga tcggggttgt ccccgccgcg cgcattgcgc accgtggcga
      121 cgtgatcgat gttgacgccg aggcggagct tggtcacagc gcgcacccct ctcggacatt
      181 aaaaaaggtg tcatggcccg cgaatgcggg ccacccaggt gataccgcgc tgaactcagc
      241 cactttaggg cgatatttca ttctttaacc atcgcgccat acgcccagct gggtggcccg
      301 cattcgcggg ccatgacatg ggagtatact ctcacgccaa ccctctggac cccggtttga
      361 cggcgggttt gttgcgcaga tgcggcggca gcttgtcggc gggccaggcc tgcactttcc
      421 attccgccag cgcgatcaac ggcacgccca ccttggcgct gccgccggag cggtcaatca
      481 gacagcaagc ggcgacaacc ttggcgccgg tcttcttgat cgcggcaatg cattcgcggg
      541 atgagacgcc ggtggagacg atgtcttcca ccatcagcac cttctggcct tttttcaggg
      601 tgaagttgcg gcgcagttgg aactcaccgt ccacccgctc gacatacatg gcgggcaggc
      661 ccatctggcg gcccatctca tagcccggca cgatgccgcc caccgccggt gagacgatgg
      721 cggtgatttc ctctttgact tccttcttca ctttcgcggc cagcgccttg cacaatttgg
      781 cggtgcgctt ggcgtcctgg aacaccagcg ccttctgcag gaacttgtcg gaatgcagcc
      841 cgctggagag gatgaaatgg ccttccagca gggcgccgga ttttttgaat tcgttgagaa
      901 cttgttcgac gttcatactc actccattat accctcccct tgagggaggg tcgaaatttg
      961 cgtcagaaaa tttcggggag gggtcatgca aacaactgac ccctccccga aaaatctccg
     1021 ctgcgctgcg atttttcggc cctccctcaa ggggagggcg aaactactgc actgtctccg
     1081 cctcgcgcac gcggtcaacc gattcgaccg cgtccgatac ccgtagcgcg cccaggatgt
     1141 tctgcaaatg cgccacgtcg cgcacctcga catcgacgat gaattcgaag aacagcggat
     1201 tgcggctggt gaccttcata ttgaagatat tgccgccatt ggcggcgatg gcggtcatca
     1261 ccgtggccag gctgccgggc gcgttcttca cccgcacctg gatgcgcgcc accgacaagc
     1321 ccatctccga agcgccctgg ccccagccca catccagcca gtcgtccatg ttatgggcgc
     1381 tgtccagctc ggcgcagtcg atggtgtgaa tcaccagccc ctcgcccggg gtgttgatgc
     1441 ccacgatgcg gtcgcccggc aggggatggc agcactggcc cagattgtag gaaataccct
     1501 cggtcaggcc gcgaatggag atcggcttga cttcgccggg cttggatttc ttggcgacct
     1561 tgccggcgcg cttgagttcg gggaacaccg cctgcagcac ttcatggccg cgcagcgcgc
     1621 cgcggccgac atcggcatag acatcttccg ccttggccag gcgcagtttc ttgacgactt
     1681 cgcccaccgc cttgtcggtc agttcgcggc cctcatcggc aaaggccttt tccagtatct
     1741 tgcggccgaa gcggacatgc tcgtcacgct gggcatggcg caggaagcgg cggatttcgg
     1801 cccgcgcccg gcccgtgacc acgaactgct cccacatcgg cgaaggcgag gcgtccttgg
     1861 tggcgatgat ctccacctgg tcgccatttt tcaaaggcgt gtgcagggcg acatggttgc
     1921 cgttgacctt ggcgcccacc gcgctgttgc ccaaatcggt atgcaccgca taggcgaagt
     1981 cgatcggcgt cgccccacgc ggcaacgaaa tcagcgaacc cttgggggtg aagcagaaga
     2041 cctgatcctg gtacatcgcc aggcgcgaat gttccagcac ctcttcggcg ctgtcgccgc
     2101 gctccagcaa gtccaccatg tcgcgcagcc agccttaggt gacgctgtct tccttgccgg
     2161 cctcggggac atgttcccga tagcgccaat gagcggcgac gccgcgctcg gcaatgtcgt
     2221 gcatctcctg ggtgcggatc tggatttcca cccgctgctt ttccgggccg atgacggtgg
     2281 tgtggatgct gcgatagccg ttgggctttg gcgtggagat gaaatccttg aagcgctccg
     2341 gcaccatctg ccaactggta tggatgatgc ccagcgccgc atagcaatcc gccgccgaac
     2401 cgacgatgac gcgaaagccg aaaatatcgg acagctgctc gaaggacagt ttcttggtct
     2461 gcagcttgcg ccagatggaa aagggccgct tgccccggcc atagacccag gcctccatgc
     2521 catgctcggc caggcggcgc ttgatctggt cggcgatgcg gcccacccgg tcgccgccca
     2581 ccatgtcgag ccgcgcaaaa tgcgtgacga tggaattgcg cgcctccggg tccagctcgg
     2641 cgaaggccag gtcttccaat tcctcgcgca tgttctgcat gccgatgcgg cccgccagtg
     2701 gggcatagat gtccactgcc tcttgcgcga tacgctggcg cttgtccggc ttgccgatat
     2761 agccaagcgt gcgcatgttg tgcaaccggt cggccagctt caccagcagc acacggttgt
     2821 cgctggtgat ggccagcatc agcttgcgga aattctccgc ctgcttggtg cgttcggaaa
     2881 aaacttccag ctgcgacagc ttggtgacgc cgtccacaag gttggcgatc tcctcgccga
     2941 atttgtcgcg caggtcgtca taagtgacca gcgtgtcctc gatggtgtcg tgcagcagcg
     3001 ccgtgacgat ggtgggcaca tccagcttga ggtcggtgag aatggccgcc acttccagcg
     3061 gatgagcgaa atagggatcg cccgaggcgc ggaactgctt gccatgcgcc gtcatggcat
     3121 agacgtaagc cttgttgagc agggcctcgt cggcggtcgg atcataggcc aacacccgct
     3181 cgaccaggtc ggcctggcgc atcaaccggc ggcggccgcg cacaggtgtg ggcgcaggga
     3241 caggtttggc cggcttttca gccgatgtga caggggttgg cgggctcatc tacccaaata
     3301 taggcagata aactcagaat cagaacctaa tcgg
//
LOCUS       DATMDK010000469         2830 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_905115,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000469 DATMDK010000000
VERSION     DATMDK010000469.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2830)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2830)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2830
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_905115"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..877)
                     /locus_tag="VNN98_09035"
     CDS             complement(<1..877)
                     /locus_tag="VNN98_09035"
                     /inference="COORDINATES: protein motif:HMM:NF020390.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1800 family protein"
                     /protein_id="HWM62286.1"
                     /translation="MRIRLAALALCAAPLALAACATTPAPRASSTPITLAANVSDLAL
                     VNRLSWGETADGRTLSGLSAKAWLEQQLNPSSDDGLPPQVQAQIAAMEISQKSLTELN
                     DEIRDLREQAQAVKGTPGYDAAQKTYQQKLNQLAQEAQTRSLLRDLYSRNQLKEQLTW
                     FWFNHFNVHAQKGEMRTIVGDYEETIRAHALGKFGELLTATALHPAMLQYLDNAQNAV
                     GHINENYAREIMELHTMGVGSGYTQKDVQELARILTGVGVNLSGKPRPFAALARADYR
                     TDVGKGGLFEFIPRRH"
     gene            1047..1394
                     /gene="secG"
                     /locus_tag="VNN98_09040"
     CDS             1047..1394
                     /gene="secG"
                     /locus_tag="VNN98_09040"
                     /inference="COORDINATES: protein motif:HMM:TIGR00810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015450 - protein-transporting ATPase
                     activity [Evidence IEA];
                     GO_process: GO:0043952 - protein transport by the Sec
                     complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecG"
                     /protein_id="HWM62287.1"
                     /translation="MQNLLLVAELIIAVALIIFVLLQRSEGGALGMGGGGSGMGGLFT
                     ARGAADTLTRTTAILAVLFFATCIGLNLLALHGRNETSILDSAPVTPGTSAPAKPALP
                     APLPVGPSVPKPQ"
     gene            1639..>2830
                     /locus_tag="VNN98_09045"
     CDS             1639..>2830
                     /locus_tag="VNN98_09045"
                     /EC_number="6.3.4.2"
                     /inference="COORDINATES: protein motif:HMM:NF003792.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003883 - CTP synthase activity [Evidence
                     IEA];
                     GO_process: GO:0006221 - pyrimidine nucleotide
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0006241 - CTP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CTP synthase"
                     /protein_id="HWM62288.1"
                     /translation="MARLVFITGGVVSSLGKGLASAALGALLQARGYKVRLRKLDPYL
                     NVDPGTMSPFQHGEVYVTDDGAETDLDLGHYERFTGVSARKSDNVTSGRIYSQVIEKE
                     RKGGYLGRTVQVIPHVTDMIKEFVLADTDGLDFLLVEIGGTVGDIEGLPFFEAIRQLH
                     NDLGRGQTAFIHLTLVPFIEAAGELKTKPTQHSVKELRAIGIQPDILLCRASHPIPDD
                     DRKKIGLFCNLAAERVIPAMDLDTIYRVPLAYHDVGLDTQLLKVFGIENAPEPDLSRW
                     NDVVYRVKNPEGEVRIAVVGKYMQVKDSYKSLSEALTHGGLANNVKVHLDWIDSEVFE
                     RDDAASFLENVDGILVPGGFGERGTEGKIGAVRFARERQVPFFGICYGLHMAVIEAAR
                     DLAGL"
BASE COUNT          497 a          879 c          913 g          541 t
ORIGIN      
        1 cgtggcggcg gggaatgaat tcgaacaggc cccccttgcc aacatccgtg cgatagtccg
       61 cccgcgccaa agccgcgaag ggccggggct tgccgctgag attgacgccc accccagtca
      121 ggatgcgcgc cagctcctgc acgtctttct gggtatagcc ggagcccacg cccatggtgt
      181 gcagctccat gatctcgcgg gcgtaattct cgttgatgtg gccgaccgcg ttctgggcat
      241 tgtccagata ttgcagcatc gccggatgca gcgcggtcgc cgtcaagagt tcgccgaact
      301 tgcccagggc atgggcgcgg atggtttctt catagtcgcc gacaatggtg cgcatctccc
      361 ctttctgggc gtggacgttg aaatgattga accagaacca ggtgagctgc tccttgagct
      421 ggttcctgga atacagatcg cgcagcagcg agcgggtctg ggcttcctgc gccagctggt
      481 tcaatttctg ctgataggtc ttctgcgccg cgtcatagcc gggcgtgcct ttcacggcct
      541 gggcctgctc gcgcagatcg cggatctcgt cattgagctc ggtgaggctt ttctggctga
      601 tctccattgc cgcaatctgg gcctggacct gcggcggcag gccgtcatcg ctggatgggt
      661 tcagctgctg ttccagccaa gccttggcgc tgaggccgct cagggtgcgg ccatcggcgg
      721 tttcgcccca gctcagccgg ttgaccaggg caaggtcgga gacattggcc gccagggtga
      781 tgggggtcga ggacgcgcgg ggcgcgggtg tggtggcgca ggcggccaaa gcgagggggg
      841 ccgcgcaaag cgccagggca gcaaggcgga tacgcatgga attccaacgc cggagggccc
      901 ctccgaccta cacagtttct gcgatttttc ggggttcccg caatgaaata tcgtccattc
      961 agtggaactt cccaaagcag gcctgatgct ttaagacccc gcccgggtgg ccaaagatgg
     1021 ctgcccaagg gaaatacgga taccccatgc agaacctgtt gcttgtcgcc gagctgatca
     1081 tcgcggtcgc gctcatcatc tttgtcctgc tgcagcggtc cgaaggcggc gcactgggca
     1141 tgggcggagg cggcagcggc atgggcgggc tgttcaccgc ccgcggcgcg gcggacaccc
     1201 tgacccgcac caccgccatc ctggcggtcc tgttcttcgc cacctgcatc ggactcaacc
     1261 tgctggcgct gcacggccgc aacgagacct cgatccttga ttcggctccc gtgacgcccg
     1321 gcacctcggc gcccgccaag ccggcgcttc ccgcgccgct gccggtcggg ccgtctgtcc
     1381 caaaacccca ataagtgagt cgcggcacgc gaagcgtgtg agcaggtccg gtgggtgagg
     1441 agcgattcgc cgtaaggcga acgtaatggt ccagtggacc atttcgagcg acgaacgccc
     1501 gaagggccgt gcggcagccg aacgggccag cggccaaatg ctcgatttcc ccgcgtaatt
     1561 cgcatagctg ttagcgcgta aaattttttc catctttgcg cttgcgcgcg cgcacctgtt
     1621 tgatgatggt gacctcccat ggcccggtta gtcttcatca ccggcggcgt ggtctcttcc
     1681 cttggaaaag gtctggcgtc cgccgccctc ggcgcgttgc ttcaagcgcg cggttacaag
     1741 gtccgcctgc gcaaactcga cccctatttg aacgtcgacc ccggcaccat gtcgccgttc
     1801 cagcatggcg aggtctatgt caccgatgac ggggcagaga ccgacctgga tctgggccat
     1861 tatgagcgct tcaccggcgt gtcggcgcgc aagtccgaca atgtcacgtc gggccgcatc
     1921 tattcccagg tgatcgagaa ggagcgcaag ggcggctatc tgggccgcac cgtgcaggtg
     1981 atcccccatg tcaccgacat gatcaaggaa ttcgtactgg ccgacaccga cgggctggat
     2041 ttcctgttgg tggaaatcgg cggcacggtg ggcgatatcg aaggcttgcc tttcttcgaa
     2101 gccatccgcc agctgcacaa cgacctggga cgcggccaga ccgcctttat ccatctgacc
     2161 ctggtgccct ttatcgaagc ggcgggcgag ctcaagacca agcccaccca gcacagcgtg
     2221 aaggagctgc gggccatcgg catccagccc gatattctat tgtgccgtgc cagccatccc
     2281 attcccgatg acgaccgcaa gaagatcggg ctgttctgta atttggccgc cgagcgggtg
     2341 atcccggcca tggatctgga caccatctac cgggtgccgc tggcctatca cgatgtcggg
     2401 ctggacaccc agctgctgaa agtgttcggc atcgagaatg cgcccgagcc cgatctgtcg
     2461 cgctggaacg atgtggtcta ccgggtgaag aatccggaag gcgaggtgcg catcgccgtg
     2521 gtcggcaaat atatgcaggt caaggacagc tacaagtcgc tgtccgaggc gctgacccat
     2581 ggcgggctgg ccaacaatgt aaaggtgcat ctggactgga tcgacagcga agtgttcgag
     2641 cgcgacgatg cggcaagctt cctggagaat gtcgacggca tattggtgcc cggcggcttc
     2701 ggcgagcgcg gcaccgaagg caagatcggc gcggtgcgtt tcgcccgcga gcgccaggta
     2761 ccgttcttcg gcatctgcta cggcctgcac atggcagtga tcgaggcggc acgcgacctg
     2821 gccggcctgg
//
LOCUS       DATMDK010000470         2619 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2507788,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000470 DATMDK010000000
VERSION     DATMDK010000470.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2619)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2619)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2619
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2507788"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..451)
                     /locus_tag="VNN98_09050"
     CDS             complement(<1..451)
                     /locus_tag="VNN98_09050"
                     /inference="COORDINATES: protein motif:HMM:NF014667.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SCO family protein"
                     /protein_id="HWM62289.1"
                     /translation="MRITALFFAMLTLLGCSKPAWHMTDISGAMPRLDFRMTANGKPV
                     TGADFRGKVVALYFGYSHCPDVCPTTLANLTDMMTKVSSPDVRVLFVTVDPDRDTDTV
                     LSDYAKAFSPQLVGLRGSANQLANLARAYRVAYTVKKGPAYEVMHSNA"
     gene            590..1180
                     /locus_tag="VNN98_09055"
     CDS             590..1180
                     /locus_tag="VNN98_09055"
                     /inference="COORDINATES: protein motif:HMM:NF016207.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FMN-binding negative transcriptional regulator"
                     /protein_id="HWM62290.1"
                     /translation="MYVPDHFREDRPDVLRGAMRRIGFATLVTQGLEANHLPTLLDGN
                     VLRGHVARANPVWKSGAGEALAIFLGPHAYVSPSWYPSKAETGKAVPTWNYITVHARG
                     AINWIVDGDWLRAHVTALSATHEAGRENPWAIGDAPASYVDGLLRAIVGFELSIAKLE
                     GKWKLSQNHDAADRAGVREGLLRDDHEDLSRLMDGA"
     gene            1177..2061
                     /locus_tag="VNN98_09060"
     CDS             1177..2061
                     /locus_tag="VNN98_09060"
                     /inference="COORDINATES: protein motif:HMM:NF021214.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase assembly protein"
                     /protein_id="HWM62291.1"
                     /translation="MKRAWYGVLLVLGAVLDVVCRLYPADLPVWLPWEFSWPEYLATA
                     LTLGWFVHGLTILPKAEHPPLWRSICFVVGMASFWIVLQTRIDFYAQHMFFVHRAAHF
                     VLHHSGAFLIALGMSGPVLFAGIPNFLKPVVTSRPVRRILAVLQHPVMAPFLFVGLLY
                     FWLIPQIHTRVMLDANLYALMNWTMAINGVMFWSLILDSRAKPPARLSHLVRAALILV
                     IELPQMVLGAILSLSEHDIYPVYTICGRVLDMTALNDQHYGGLIIWLPGTLTSFAAMI
                     VVLVTMRLNEERAERETA"
     gene            2048..2470
                     /locus_tag="VNN98_09065"
     CDS             2048..2470
                     /locus_tag="VNN98_09065"
                     /inference="COORDINATES: protein motif:HMM:NF016221.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016531 - copper chaperone activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="copper chaperone PCu(A)C"
                     /protein_id="HWM62292.1"
                     /translation="MKRLNAIALIAMTSAAQAAPLDVTGAWFRALPGKLPAGGYFTAQ
                     NNTRRDIAIAGASSDACGMLMIHQSRTAGGMSGMDMVDKVSVPAGGKIAFAPGGYRLM
                     CESPTPKMKIGAKVPVVFSLSDGSAVAVAFSVRGANGK"
BASE COUNT          464 a          776 c          869 g          510 t
ORIGIN      
        1 ccgcattgga gtgcatcacc tcataggccg ggcctttctt caccgtatag gcaacgcgat
       61 aggcacgggc gaggttggcg agctggttgg cgctgccgcg caatcccacc agctggggcg
      121 aaaaggcctt ggcatagtcg ctaagcaccg tatcggtgtc gcggtccggg tccacggtga
      181 cgaacaggac ccgcacgtcg gggctactca ccttcgtcat catgtcggtg aggttggcta
      241 gggtggtggg acagacatcg gggcaatggc tgtagccgaa atacagcgcc accaccttgc
      301 cgcggaaatc cgcgcccgtg actggcttgc cgttggcggt catgcggaaa tccagccggg
      361 gcatggcgcc ggaaatatca gtcatgtgcc aggctggttt cgagcagcca agcagggtga
      421 gcattgcgaa aaacagggca gtgatgcgca tggccgcgtc cttatcacgc tgggcgcatg
      481 gcgcacaggc gcatattgta acggtcgcgc cagcaggccc tgcgcgatgg cttcgccatc
      541 gctccgggtt gccggtcgct ccgtgtatcg cggcccgagg aaaccgacca tgtatgtgcc
      601 cgaccatttc cgcgaagacc ggcccgatgt gctgcggggc gccatgcggc gaatcggctt
      661 tgccaccctg gtgacgcagg gtctggaagc caatcacctg cccacgttgc tggatggcaa
      721 tgtgttgcgc ggccatgtcg cccgcgccaa tccggtgtgg aaatccggcg cgggcgaggc
      781 actggcgatc tttctggggc cgcatgccta tgtctcgccc agctggtatc ccagcaaggc
      841 cgagaccggc aaagcggtcc cgacctggaa ctacatcacg gtgcatgcgc gcggggccat
      901 caactggatt gtggacggcg actggctgcg cgcccatgtc actgcgctga gcgccacgca
      961 tgaagcgggg cgcgaaaatc cctgggcgat cggcgacgcg cccgccagct atgtcgatgg
     1021 gttgttgcgc gccattgtcg gcttcgagct gagcattgcc aaactggaag gcaagtggaa
     1081 gctcagccag aaccacgatg ctgctgatcg cgccggggtc cgcgaaggcc tgctgcgcga
     1141 tgaccatgaa gacctgtcgc gtctgatgga cggggcatga aacgggcttg gtatggcgtg
     1201 ctgctggtgc tgggcgcggt gctggatgtc gtctgccgcc tgtatcccgc cgacttgccg
     1261 gtgtggctgc cctgggaatt ttcctggccg gaatatctgg cgacggcgct gaccctgggc
     1321 tggttcgtcc atgggctgac aatattgccc aaggccgaac atccaccgct gtggcgcagc
     1381 atctgtttcg tggttggcat ggccagtttc tggatcgtgc tgcagacccg catcgacttt
     1441 tacgcccagc acatgttctt cgtgcaccgg gcggcgcact ttgtacttca ccattctggc
     1501 gccttcctga tcgcgctggg gatgagcgga ccggtgttgt tcgcgggcat accgaatttc
     1561 ttgaagccgg tggtcacatc gcggccggta cggcgcatcc tggcggtact gcagcatccg
     1621 gtgatggcgc cctttctgtt tgtcgggctg ctttatttct ggctgattcc gcagatccac
     1681 acccgcgtga tgctggatgc caatctgtac gcgttgatga actggaccat ggcgatcaat
     1741 ggcgtgatgt tctggtcgct gattctggat tcgcgtgcca aaccacccgc ccgtctgtcg
     1801 catctggtgc gcgccgccct gatcctggtg atcgaactgc cgcagatggt gctgggcgcc
     1861 attctgtcgc tcagcgagca tgacatctat ccggtctaca ccatctgcgg ccgggtgctg
     1921 gacatgacgg cgctgaatga ccaacattat ggcgggctga tcatctggct gcccggcacc
     1981 ctgaccagct ttgccgccat gatcgtggtg ctggtgacca tgcgtttgaa cgaagagaga
     2041 gcggaacgtg aaacggctta atgcgattgc cttgattgcc atgacgagtg cggcgcaggc
     2101 cgcgccgctg gacgttaccg gtgcctggtt ccgcgccttg ccgggcaagc tgccggcagg
     2161 cggctatttc accgcccaga acaatacacg gcgcgacatc gctatcgccg gggcgtcatc
     2221 ggacgcctgc ggcatgttga tgatccacca atccagaacc gcgggcggga tgagcggtat
     2281 ggacatggtg gacaaggtga gcgtgccggc gggcggcaag attgccttcg cccccggcgg
     2341 ctatcgcctg atgtgcgaga gtcctacgcc caagatgaag atcggggcca aggtgccggt
     2401 ggtgttcagc ctatcagacg gaagcgcggt ggcagtggca ttttccgttc gtggtgcgaa
     2461 cggaaaatag ctgcggcgcg ccgaaggcgc gagagcaggc ccgggacctg cgaaagcaga
     2521 gaaccgcaac ccggatcagg cgacgtccga ccgtccggcg gttttgcgcc agagcggcag
     2581 caaagcgaca aagaaaaccc cgaacgcata gccaagtag
//
LOCUS       DATMDK010000471         2832 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2509359,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000471 DATMDK010000000
VERSION     DATMDK010000471.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2832)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2832)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2832
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2509359"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..292
                     /locus_tag="VNN98_09070"
     CDS             <1..292
                     /locus_tag="VNN98_09070"
                     /inference="COORDINATES: protein motif:HMM:NF012562.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM62293.1"
                     /translation="APKARANALGLKYLAGKKLGDLVDAEARATAQTLFKNGRPVRQI
                     HLAKVDEFHMGALMMHFMLETIIMGRLMGVDPFDQPGVEEGKILARQYLAQK"
     gene            292..2043
                     /gene="mutL"
                     /locus_tag="VNN98_09075"
     CDS             292..2043
                     /gene="mutL"
                     /locus_tag="VNN98_09075"
                     /inference="COORDINATES: protein motif:HMM:TIGR00585.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006298 - mismatch repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA mismatch repair endonuclease MutL"
                     /protein_id="HWM62294.1"
                     /translation="MAIRRLSEGTVNRIAAGEVVERPAAAIKELVENAMDAGATRIDV
                     AASNGGADLLLVEDDGVGMSAGDLTLAIERHATSKLPVTGGEDDLSHIITMGFRGEAL
                     PSIGAVSRLTLASRTADGEAAEIKVDGGRIEGPRPTAFLARGQHGTRAEVRELFYATP
                     ARLKFLKSTRSEDLAITDIVKRLAMARPDIGFTLTLDGRKAIDLPAEPDLMDGRLPRL
                     ARIMGRDFGDNAAAVEAGREGVTLSGYAGLPTYNRANAAMQFLFVNGRPVRDKLLVGA
                     VRGAYADFLARDRHPALALFLDCDPSFVDVNVHPAKTEVRFRDAGLVRGLIVGALKHA
                     LSEAGHRASTTVASSALAAFQRQAPSYAPSSLGLHGAMFETPMSVRMEEPPVEAAPET
                     PLGVARAQLHETYVVAQTADGIVIVDQHAAHERLVYERMKKALANGGVQRQPLLIPEV
                     VDLDPSEVTRLVARAAELAELGLVIEAFGPDAVVVREVPALLGKLDVKGLVRDLADEI
                     AESGNALSLKERLEEVSGTLACHMSVRAGRRLNAEEMNALLREMEATPHSGQCNHGRP
                     TYVELKLADIEKLFGRR"
     gene            complement(2237..>2832)
                     /gene="rsmD"
                     /locus_tag="VNN98_09080"
     CDS             complement(2237..>2832)
                     /gene="rsmD"
                     /locus_tag="VNN98_09080"
                     /EC_number="2.1.1.171"
                     /inference="COORDINATES: protein motif:HMM:TIGR00095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0052913 - 16S rRNA
                     (guanine(966)-N(2))-methyltransferase activity [Evidence
                     IEA];
                     GO_process: GO:0031167 - rRNA methylation [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="16S rRNA (guanine(966)-N(2))-methyltransferase
                     RsmD"
                     /protein_id="HWM62295.1"
                     /translation="ALQRGFMRITGGNLRGRQLVAPRDQSVRPTSDRTRQAIFNMLQH
                     KDFGIGFALEGAAVADLFAGTGALGIEAISHGARWCLLVDDNADSRALQRENVEALGL
                     TGATRIWRRDATDLGPLSPSAGGPFNLVFLDPPYRKGLIPRALQSLKDGTWLADHALL
                     VAETESSEPLEAPGFTAIDEGDYGETRVRFLTQAGEN"
BASE COUNT          482 a          899 c          968 g          483 t
ORIGIN      
        1 cgcgcccaag gcgcgcgcca atgcgctggg cctgaaatat ctcgcgggca aaaagttggg
       61 cgatctggtg gatgcggaag cccgcgccac cgcccagacc ctgttcaaga acggccgtcc
      121 ggtgcgccag attcatctcg ccaaggtgga cgagttccac atgggcgcgc tgatgatgca
      181 cttcatgctg gagaccatca tcatgggccg gttgatgggc gtcgatccgt ttgaccagcc
      241 cggcgtggaa gaaggcaaga tactggcgcg gcagtatctg gctcaaaaat aatggccatc
      301 cggcggcttt ccgaaggcac cgtcaaccgc atcgctgccg gcgaagttgt ggaacggccc
      361 gccgccgcga tcaaggagct ggtggagaat gccatggatg cgggcgccac ccgcatcgac
      421 gtcgccgcct ccaatggcgg cgccgacctg ctgctggtgg aagatgacgg cgtcggcatg
      481 tcagccggcg atctgacctt ggcgatcgaa cgccatgcca cctccaaact gccggtgact
      541 ggcggcgagg acgatctttc gcacatcatc accatgggtt ttcgcggcga ggcgttgccc
      601 tcgatcggtg cggtgtcgcg gctgaccctg gccagccgca cggcagacgg cgaggcggcg
      661 gaaatcaaag tggacggcgg gcggatcgaa ggccccaggc ccacggcctt tctggcacgc
      721 ggccagcacg gcacccgcgc cgaagtgcgc gaattgttct acgccacccc ggcacggctg
      781 aaattcctta aatccacccg ctcggaagat ctggcgatca ccgacatcgt caaacggttg
      841 gcgatggcgc ggcccgatat cggtttcacc ctgacattgg atgggcgcaa agcgattgat
      901 cttcccgccg agcccgacct gatggatggc cggctgccgc gcctggcccg catcatgggc
      961 cgcgatttcg gcgacaatgc cgcagccgtg gaagcgggcc gcgagggcgt gacgctgagc
     1021 ggctatgccg ggcttcccac ctataaccgc gccaatgccg ccatgcagtt cctgttcgtc
     1081 aatggccggc cggtgcgcga caagctgctg gtaggggcgg tgcgcggcgc ctatgccgac
     1141 ttcctggcgc gcgaccgcca tccggcgctg gcgctgttcc tggactgcga tcccagtttc
     1201 gtggacgtga atgtccatcc cgccaagacg gaagtgcgtt tccgcgatgc cgggctggtg
     1261 cgcgggttga ttgtcggcgc cctgaaacac gccttgagcg aggcgggtca tcgcgcttcc
     1321 accacggtgg catcttccgc gctggcggcg ttccagcgcc aggcaccgag ttacgcgccg
     1381 tccagtctcg gcctgcacgg cgccatgttc gagacgccga tgtcggtgcg gatggaagaa
     1441 ccgccggtag aggccgcacc ggaaacccca ttgggcgtcg cccgggcgca attgcacgag
     1501 acctatgtcg tggcccagac cgccgacggc atcgtcatcg tggaccagca tgccgcccat
     1561 gaacggctgg tctatgagcg gatgaaaaaa gccctggcca atggcggggt tcagcgccag
     1621 ccgctgctga ttcccgaagt ggtggatctg gacccctcgg aagtcacccg cctggtggcg
     1681 cgggctgccg agctggccga gctggggctg gtgatcgagg ctttcgggcc cgacgcggtg
     1741 gtggtgcgcg aagtgccggc tctgctgggc aaactggatg tgaagggcct ggtgcgcgac
     1801 ctggccgacg agatcgccga aagcggcaac gctttgtcgc tgaaggagcg gctggaggag
     1861 gtttccggca ccttggcctg ccacatgagc gtgcgggcgg gccgccgcct gaatgccgag
     1921 gagatgaacg ccctgctgcg cgagatggag gcgacgcccc attccggcca gtgcaatcac
     1981 gggcggccga cttatgtcga gctcaaactg gcggatatcg agaagctgtt cggaagacgc
     2041 tgagccaagt ccccctcacc ctcgccgcgc aaatattgcg cggctcttcc ctctcccccg
     2101 atggaggaga gggcaaggga gcgtagcgac cgcgggtgag ggggatgttg ccgctgggct
     2161 ggcgggagaa agtcgtggag attttggcca tggcttcgcc ccgctccaaa gggaaggtcg
     2221 agagggaaag gtgaatttag ttttcgccag cttgggtcaa aaaccgcacc cgggtctcgc
     2281 cgtaatcacc ttcgtcgatc gctgtgaatc ccggtgcttc cagcggctcg gagctctccg
     2341 tttccgccac cagcagcgcg tgatcggcca gccaggtgcc gtccttcagg ctttggagcg
     2401 cgcgcgggat caggcctttg cgatagggcg ggtccaggaa cacaagattg aacggcccgc
     2461 cggcgctggg cgagagcggc cccaggtctg tcgcgtcgcg ccgccagatg cgagtggcgc
     2521 cggtcaggcc cagcgcctcg acattctcgc gttgcagggc gcggctgtcg gcgttgtcat
     2581 ccaccagcag gcaccagcgc gcgccgtggc tgatggcctc gatccccagg gcgccggtgc
     2641 ctgcgaacag gtccgccacc gccgcgcctt ccagcgcaaa gccgatgccg aagtccttgt
     2701 gctgcagcat gttgaagatg gcctggcggg tgcggtcgga ggtgggccgc accgactggt
     2761 cgcggggcgc gaccagttgt cgtcccctca gattaccgcc cgtaattctc ataaaccctc
     2821 tttgcaatgc gg
//
LOCUS       DATMDK010000472         2173 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2737370,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000472 DATMDK010000000
VERSION     DATMDK010000472.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2173)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2173)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2173
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2737370"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..831)
                     /locus_tag="VNN98_09085"
     CDS             complement(<1..831)
                     /locus_tag="VNN98_09085"
                     /EC_number="4.1.3.3"
                     /EC_number="4.2.1.41"
                     /EC_number="4.3.3.7"
                     /inference="COORDINATES: protein motif:HMM:NF012904.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009436 - glyoxylate catabolic process
                     [Evidence IEA];
                     GO_process: GO:0071704 - organic substance metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrodipicolinate synthase family protein"
                     /protein_id="HWM62296.1"
                     /translation="MTHTITRRGALNLMASAAILAAPAAAQSASTAKPMRGVMPIVVT
                     PYRPDAAVDFEDLARQMVFYDKCGCTGAAWPQGNGDILLLSKEERLRGMKVIADACRP
                     TKVASVLGVQGATKAEMLGYARYAETLQPDALIAMPPAAEQSEAGYHDYFAALASLSK
                     RPIFIQTTISGAPNALAPSVELMVQLAREFPHLAYIKEETRPLVARMKAEARQRPPLK
                     SVFGATGGDGWLYELRLGLDGEMTAQGMYGDVMVAIWNLYQSGKREQAADAFSKLLLM
                     K"
     gene            1031..>2173
                     /locus_tag="VNN98_09090"
     CDS             1031..>2173
                     /locus_tag="VNN98_09090"
                     /inference="COORDINATES: protein motif:HMM:NF019581.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HWM62297.1"
                     /translation="MRTRSFLKTQTAAAAFLAWLATPALAQSQSVDTLIAGGTVYDGS
                     EGKPFTGDIAISGDKIVFVGPAGKTKFNAKKTIDAKGMIVSPGFIDGHTHADHFLNDP
                     DAEQRRAPAYITDGVSTVIIGVDGNGVPELKDQFAKYKQQGVGVNMASYVGFGAIRKR
                     VIGDDARAPTGAELATEKNLVAKGMCEGAIGLSAGLFYAPQSFAKTGEVVELAKEAAK
                     RGGIYDTHQRDESSYSIGLIASTKEVLQIGREAGIPVHFSHIKVLGQDVWGKSAEVIK
                     LIEEAKALGQNVTANQYPWLASSTGLDAALVPRWAVDGGYTAMIKRFNDPAQMAKIKT
                     EMTDNLRRRGGPHAILFTGKDKPWTGKYLDEMAKGWKVDPIDAAIRV"
BASE COUNT          429 a          692 c          671 g          381 t
ORIGIN      
        1 cttcatcagc agcaattttg aaaaagcatc cgccgcctgc tcgcgcttgc cgctttgata
       61 cagattccag atcgccacca tgacatcgcc atacatgccc tgagccgtca tctccccgtc
      121 cagccccagg cgcaactcat acaaccatcc gtcgccgccg gtggccccga acacgctttt
      181 gagcggcggc cgctgccggg cctcggcctt catgcgcgcc accagcggcc gcgtctcttc
      241 cttgatatag gccagatggg gaaactcccg cgccagctgc accatcagct ccacgctggg
      301 cgccagcgcg ttcggcgcgc cgctgatcgt ggtctggatg aagatcggcc gcttggacag
      361 gctggccaga gccgcgaagt aatcatgata gcccgcttcg ctctgctcgg cggcgggcgg
      421 catggcgatc agcgcatcgg gctgcaaggt ttcggcatag cgggcatagc ccagcatctc
      481 cgccttggtg gcaccctgga cacccagcac gctggccact ttggtcgggc ggcaggcgtc
      541 ggcgatcact ttcatgcccc gcagccgctc ctccttgctg agcagcagga tgtcgccatt
      601 gccctgcggc caagccgcgc cggtgcagcc gcatttgtcg tagaacacca tctgccgggc
      661 gagatcttca aagtccaccg cggcatccgg cctgtagggc gtgaccacga tgggcatcac
      721 gccgcgcata ggtttcgcag tagaggcgct ttgggcggcg gcgggagcgg ccaatatagc
      781 ggcggaagcc atcaagttca gcgcgccgcg acgggtaatc gtgtgggtca aggttgttcc
      841 ctgctcaact tgtttgcctg tttagcaata gatcgcgccg ctgcccagag agcccgtatt
      901 tcggggttgt ctttgcgtcc gattgcgtct tgccggcgtg gggcgccgcc ttgcctgcct
      961 tattcaattg ccgcatgatc gcgccaacgg gaagccggca cggcgaacag gcacccgcga
     1021 cggggaaaaa atgagaacaa gaagttttct gaaaacgcag acggctgccg ccgcgtttct
     1081 tgcctggctg gcaacgccgg cactggcgca gagccagtcc gtcgacacgc tgatcgccgg
     1141 cggcacggtc tatgacggat cggagggcaa accctttacc ggcgatatcg cgatcagcgg
     1201 cgacaagatc gtgtttgtcg ggcccgcagg taaaacgaaa ttcaacgcca agaagacaat
     1261 cgacgccaag ggcatgatcg tctcgccggg cttcatcgac ggccacaccc atgctgatca
     1321 ttttctcaat gacccggacg cagagcagcg ccgggcgccc gcctatatca ccgacggggt
     1381 cagcacggtc atcatcggcg tcgacggcaa cggcgtgccg gaactgaaag accagttcgc
     1441 caaatacaaa cagcagggcg tcggcgtcaa catggcctct tatgtcggct ttggcgcaat
     1501 ccgcaagcgg gtgatcggcg atgacgcgcg cgcgcccacg ggggccgagt tggcgaccga
     1561 aaagaacctg gtggcaaagg gcatgtgcga aggcgcgatc ggcctctccg ccggcctgtt
     1621 ctatgccccg caaagcttcg ccaagaccgg cgaagtcgtc gagctggcca aggaagccgc
     1681 caagcgcggc ggcatctacg atacccacca gcgcgacgaa tcctcctatt ccatcggtct
     1741 catcgcttcg accaaggaag tgctgcagat cggccgcgaa gcaggaatcc cggtgcattt
     1801 ctcgcacatc aaggtgctgg ggcaggatgt ctggggaaaa tcggccgagg tcatcaagct
     1861 gatcgaggag gccaaggcgt tggggcaaaa cgtcaccgcc aatcaatatc cctggctggc
     1921 ctcgtctacc ggcctggacg cagcgctggt gccgcgctgg gcggtcgatg gcggttatac
     1981 cgccatgatc aagcggttca acgatcctgc ccagatggcg aagatcaaga cggaaatgac
     2041 ggacaatctg cgtcgccgcg gcgggccgca cgccatcctg tttaccggca aggacaagcc
     2101 ctggacggga aaatatctgg atgagatggc caagggatgg aaggtcgatc ccatcgacgc
     2161 tgccatccgc gtc
//
LOCUS       DATMDK010000473         4644 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1139273,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000473 DATMDK010000000
VERSION     DATMDK010000473.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 4644)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4644)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4644
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1139273"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..212)
                     /locus_tag="VNN98_09095"
     CDS             complement(<1..212)
                     /locus_tag="VNN98_09095"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM62298.1"
                     /translation="MRKHLFLLPLLAVAACGPSDRCEAPPQPQLLSAKNLTLVQKADA
                     MGIPPSQVPQDAVSAPAFDDYVARRN"
     gene            complement(351..773)
                     /gene="rplQ"
                     /locus_tag="VNN98_09100"
     CDS             complement(351..773)
                     /gene="rplQ"
                     /locus_tag="VNN98_09100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004786886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005762 - mitochondrial large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L17"
                     /protein_id="HWM62299.1"
                     /translation="MRHGNQGRKFNRTASHRKAMWGNMTAALIKHEQIKTTLPKAKDL
                     RPVIEKLVTLSRRGPADLHARRQALAQIKDADQVTKLFDVIGPRYAGRPGGYTRVLKA
                     GFRHGDNAPMAIIEFIDRDVGAKGLDSGPVEVSEDANA"
     gene            complement(794..1810)
                     /locus_tag="VNN98_09105"
     CDS             complement(794..1810)
                     /locus_tag="VNN98_09105"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017979463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003899 - DNA-directed 5'-3' RNA
                     polymerase activity [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit alpha"
                     /protein_id="HWM62300.1"
                     /translation="MFQKNWQELIKPGKLKTEGGHDAGRTATITAEPLERGFGLTLGN
                     SLRRVLLSSLQGAAVTAISIEGVLHEFSSIQGVREDVTDIVLNVKMIALRMHAEGPKR
                     VSLRKQGPGEVKAGDIQTSADIEILNPELVLCTLDEKVDFRMELTIASGKGYVPADRN
                     RPEDAPIGLIPVDSLFSPVKKVSYKVENTREGQILDYDKLTLTVETNGAVTPDNAVAY
                     AARILQDQLQVFINFEEPRERAAEEAKPDLAFNPVLLKKVDELELSVRSANCLKNDNI
                     VYIGDLIQKTEAEMLRTPNFGRKSLNEIKAVLAEMGLHLGMEVPGWPPENIEDLAKRY
                     EDQY"
     gene            complement(1919..2326)
                     /gene="rpsK"
                     /locus_tag="VNN98_09110"
     CDS             complement(1919..2326)
                     /gene="rpsK"
                     /locus_tag="VNN98_09110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012397714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S11"
                     /protein_id="HWM62301.1"
                     /translation="MAEDKKAGGKAPRARKKEKKNVVVGVAHVAATFNNTIVTITDPA
                     GNAIAWSSAGMMGFKGSRKSTPYAAQMAAEDAGRKAVEHGMRTLEVEVSGPGSGRESA
                     LRALQAIGLVVTSIRDVTPIPHNGCRPPKRRRV"
     gene            complement(2330..2707)
                     /gene="rpsM"
                     /locus_tag="VNN98_09115"
     CDS             complement(2330..2707)
                     /gene="rpsM"
                     /locus_tag="VNN98_09115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009125149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S13"
                     /protein_id="HWM62302.1"
                     /translation="MARIAGVNIPTQKRVEIGLRYIHGIGPHTAHKIINQLGIDPARR
                     VSDLTESEVIQIREVIDRDFMVEGDLRRDVAMNIKRLMDLGCYRGLRHRKSLPVRGQR
                     THTNARTRKGPAKAIAGKKKVTK"
     gene            complement(2915..3493)
                     /locus_tag="VNN98_09120"
     CDS             complement(2915..3493)
                     /locus_tag="VNN98_09120"
                     /EC_number="2.7.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004970717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0019205 - nucleobase-containing compound
                     kinase activity [Evidence IEA];
                     GO_process: GO:0006139 - nucleobase-containing compound
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate kinase"
                     /protein_id="HWM62303.1"
                     /translation="MNIVLFGPPGAGKGTQSKILTEKRGLPQLSTGDMLRAAIEAGTP
                     LGLACKALMAKGELVSDETVIRIIGERYDQPDCRNGAVFDGFPRTIPQAEALDAMLAE
                     RGRGIDLVLELKVDDAVLLSRVQARIKAGGVLRSDDTPETLAHRLGVYYRNTAPLIDF
                     YRGQGKLKTADGMAPVEAVTAQIAEILDEVPA"
     gene            complement(3490..>4644)
                     /gene="secY"
                     /locus_tag="VNN98_09125"
     CDS             complement(3490..>4644)
                     /gene="secY"
                     /locus_tag="VNN98_09125"
                     /inference="COORDINATES: protein motif:HMM:TIGR00967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015450 - protein-transporting ATPase
                     activity [Evidence IEA];
                     GO_process: GO:0043952 - protein transport by the Sec
                     complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecY"
                     /protein_id="HWM62304.1"
                     /translation="GLLDVFNTLSGGAVGRMAVFALGIMPYISASIIIQLMTTVFPEL
                     EALKKEGEAGRKVLNQYTRYFTVVLAMVQAYGIAMGLEHFGGQSHIVIHPGFFFRIGA
                     VVTLTGGTMLLMWIGEQITSRGVGNGISLIIFAGIVARFPAIIGQTLEQARTGAVNPL
                     LVVFFAGFTVVLVGFIVFMERAQRRLFVTYPKRQVGNKVYGGDSSHLPLKLNVSGVIP
                     PIFASSILLLPTTIASFNAQNLPGWLQTIVTYLSRGQPLYLVMYAALILFFAFFYTSI
                     VFNPEETAENLKKYGGVFPGIRPGKKSAQFIDYTLTRITVIGALYLTIVCLIPELMFY
                     KYNLSFSLGGTSILIVVSVTMDTVAQIQSHLVAQQYEGLLKKSKLRGARR"
BASE COUNT          871 a         1380 c         1478 g          915 t
ORIGIN      
        1 tcattgcggc gggcgacata atcatcaaag gccggcgccg agaccgcatc ctgcggcacc
       61 tgggacggcg gtatgcccat ggcatcggcc ttctgcacca aagtcaggtt tttcgcggac
      121 agcagctggg gctggggcgg cgcctcgcaa cggtcagacg ggccgcaggc ggcaaccgct
      181 agaagcggca gcaggaacaa gtgtttgcgc atgttatgac ctttcgaaag ttccaaatca
      241 aaggtcacaa cgtttcacaa cgaaaaaggg cctcaaggtg caaagcggaa ggccaaacga
      301 aaagggcggc atttctgccg ccctaatcca cattgagagt ttggcgaaaa tcaggcgttg
      361 gcgtcttccg acacttccac gggccccgaa tccaggccct tggcgcccac gtcgcgatcg
      421 atgaactcga tgatcgccat cggggcattg tcgccatggc ggaagccggc cttcaacacg
      481 cgagtgtagc cgccgggacg gccggcatag cgcgggccga tcacgtcgaa cagcttggtc
      541 acctggtcgg catccttgat ctgggccagg gcctgacggc gggcatggag gtccgcaggt
      601 ccacggcgcg acagggtcac cagcttttcg atcaccgggc gaagatcctt ggccttgggc
      661 agcgtggtct tgatctgctc atgcttgatc agcgccgcgg tcatgttgcc ccacatcgcc
      721 ttgcgatgcg aagcggtgcg gttgaacttg cggccttgat taccgtgacg catggcagtg
      781 tctttctaaa agatcagtat tggtcttcgt aacgcttggc gaggtcttcg atattctccg
      841 gcggccagcc gggcacttcc atgcccagat gcaagcccat ttccgcgaga acggctttga
      901 tctcattcag cgacttgcgg ccgaagttcg gggtgcggag catttccgcc tccgtcttct
      961 ggatcaggtc gccgatatag actatattgt cgttcttcag gcagttggcc gaacgcaccg
     1021 acagttccag ctcgtccacc ttcttgagca gcaccggatt gaaagccaga tcgggcttgg
     1081 cttcctcggc ggcacgctcg cgcggctctt cgaaattgat gaagacctgg agctggtcct
     1141 gcaggatgcg cgcggcatag gccacggcat tgtccggcgt gacggcgcca ttggtttcga
     1201 ccgtgagggt cagcttgtca tagtccagaa tctggccctc gcgggtgttc tcgaccttgt
     1261 aggaaacctt cttcaccggg gagaacagcg aatccaccgg gatcaggccg atgggggcgt
     1321 cttcgggacg gttgcggtcg gccgggacat agcccttgcc ggacgcgatg gtgagttcca
     1381 tgcggaaatc caccttctcg tccagggtgc agagcaccag ttcgggattg aggatttcga
     1441 tgtcggcact ggtctggatg tcgccggcct tcacttcgcc cggaccctgc ttgcgcaagg
     1501 atacgcgctt gggaccttcg gcatgcatgc gcagcgcgat catcttcacg ttgagcacga
     1561 tgtcggtgac gtcttcgcgc acgccctgga tggaggagaa ttcgtgcagc acgccttcga
     1621 tggagatggc ggtgacggcg gcgccctgca gcgagctgag cagcacgcgg cgcagggaat
     1681 tgcccagagt caggccgaag ccgcgttcca gcggttcggc ggtgatggtg gcggtgcggc
     1741 ccgcgtcatg accaccttcg gtcttgagct tgccgggctt gatcagttct tgccagttct
     1801 tctgaaacat attgtcctca tcgtgtcccg ggcatgtcgg accatgccca tacgttcgac
     1861 gggttagcgg tatgtccgaa aacttttctc tggtcgctcc ggctctcgcc tacgctcctt
     1921 atacgcggcg gcgcttgggc gggcggcagc cattgtgcgg aatcggcgtc acatcgcgga
     1981 tcgaggtgac gacgaggccg atggcctgca gcgcgcgcag cgccgactcg cggcccgaac
     2041 ccgggccgga aacttccact tccagggtgc gcatgccgtg ctcaaccgcc ttgcggccgg
     2101 cgtcttcggc ggccatctgc gctgcatagg gcgtggactt gcgcgacccc ttgaagccca
     2161 tcatgccggc gctggaccag gcaatcgcat tgcccgccgg atcggtgatg gtaacgatgg
     2221 tgttgttgaa ggtggcggcg acatgcgcca cgccgaccac aacattcttc ttttctttct
     2281 tgcgggcgcg gggggctttg ccgccggcct tcttgtcttc agccatgact tacttggtga
     2341 ctttcttctt gccggcgatc gctttggcag ggcctttgcg ggtacgggcg ttggtgtggg
     2401 tgcgctggcc gcggaccggc aggctcttgc ggtggcgcag gccgcgatag cagcccaggt
     2461 ccatcaggcg cttgatgttc atggcgacgt cgcggcgcag atcgccttca accataaagt
     2521 cgcggtcgat gacttcgcgg atctggatga cctccgattc ggtcaggtcg ctgacccggc
     2581 gggcgggatc gatccccagc tggttgatga tcttatgcgc ggtatgcggc ccgatgccgt
     2641 ggatatagcg aaggccgatt tcgactcgct tctgggtcgg gatattgacg ccggcgatac
     2701 gtgccactgg ggatgtctcc gaaggctgtt aagccattga acttattaac aaaatctttg
     2761 gcggcaaaat cccggccaca tccgggcccg ggcggcctgg aaaaagcccc gaaaacgcgg
     2821 aaatgacagg aaaatctgtc gcgagggcgc ggattatagg aatagacccc ctgtcgtcaa
     2881 tggttagccg ggatttattg ccacagggcc aaaatcaggc tggaacctcg tccaaaatct
     2941 ccgcgatctg ggcggttacg gcctccaccg gggccatgcc gtccgcggtc ttcagcttgc
     3001 cctgcccccg gtagaaatcg atcagcgggg ctgtgttgcg gtaatagacc cccagccggt
     3061 gggccagggt ttccggggtg tcgtccgacc tgagtacgcc gccggccttg atccgagcct
     3121 ggacgcggga aagcagcacg gcatcgtcca ccttgagctc cagcaccagg tcgatcccgc
     3181 ggccgcgctc ggccagcatc gcgtccagcg cctcggcctg cgggatggtg cggggaaagc
     3241 cgtcgaatac cgcgccattc ctgcaatcgg gctggtcata acgctcgccg atgatgcgga
     3301 tcacggtttc gtcggacacc agctcgccct tggccatcag cgccttgcag gccaggccca
     3361 gcggcgtacc cgcctcgatc gcggcgcgca gcatgtcgcc ggtggaaagc tgcggcagac
     3421 cgcgcttttc ggtgagtatc ttggattgcg tgcccttgcc cgcccccggc ggcccgaaca
     3481 gtacaatgtt caccgtcgcg ctccccgcag cttcgatttc ttgagcaggc cttcatattg
     3541 ctgcgccacc agatgactct ggatctgcgc caccgtgtcc atggtgaccg agaccacgat
     3601 caggatcgag gtgccaccca gcgagaagga caggttgtat ttgtagaaca tgagttcggg
     3661 gatcaggcag acgatggtca ggtacagtgc gccgatcacg gtgatgcggg tgagcgtata
     3721 atcgatgaac tgggcgcttt tcttaccggg acgaattccc gggaaaacgc cgccatactt
     3781 tttcagattc tccgccgtct cttccggatt gaagacgatg gaggtgtaga aaaaggcgaa
     3841 gaacaggatc agcgccgcat acatcaccag atagagcggc tggccgcggc tgagataggt
     3901 gacgatggtc tgcagccatc ccggcaggtt ctgggcattg aagctggcga tggtggtggg
     3961 cagcagcagg atcgaagagg cgaagatcgg cgggatcaca cccgacacgt tcagcttcag
     4021 cggcagatgc gaagaatcgc caccatagac cttattgccg acctggcgct tgggataggt
     4081 gacgaacagc cggcgctggg cccgctccat gaagacgatg aagccgacca gcaccacggt
     4141 gaaacccgcg aagaagacga ccaggagcgg attgacggca ccggtgcgcg cctgctccag
     4201 ggtctggccg atgatggcgg gaaaccgcgc cacgatgccg gcgaagatga tcagcgaaat
     4261 gccgttgccg acgccgcggc tggtgatctg ctcgccgatc cacatcagca gcatggtgcc
     4321 gccggtcaag gtgaccaccg cgccgatgcg gaagaaaaag ccgggatgga tgacgatgtg
     4381 actctggccg ccgaaatgct ccagccccat ggcgatgccg taagcctgga ccatggccag
     4441 caccacggtg aaataacggg tgtactggtt gaggaccttg cggcccgcct cgccttcctt
     4501 cttcagcgct tccagttctg gaaacaccgt ggtcatcagc tgaatgatga tggaggccga
     4561 gatatagggc atgatcccca gggcgaatac cgccatgcga ccgactgcgc cacccgacaa
     4621 ggtattgaac acatcgagca atcc
//
LOCUS       DATMDK010000474         2551 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_907589,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000474 DATMDK010000000
VERSION     DATMDK010000474.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2551)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2551)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2551
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_907589"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..195)
                     /locus_tag="VNN98_09130"
     CDS             complement(<1..195)
                     /locus_tag="VNN98_09130"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM62305.1"
                     /translation="MRATVILGFAATLLVAGCGSDPGDRLASGALLGAAGGAVIGGAA
                     GNAGLGAAAGAVAGGVIGAAT"
     gene            complement(349..1680)
                     /locus_tag="VNN98_09135"
     CDS             complement(349..1680)
                     /locus_tag="VNN98_09135"
                     /inference="COORDINATES: protein motif:HMM:NF019222.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1552 domain-containing protein"
                     /protein_id="HWM62306.1"
                     /translation="MPHSTDKPSFVSKAFSRRVVLRGAGCTMALPWLESVNAVAAQSD
                     FPKRFGVVFLGCGINENYWSAEGNGADMKLSKTLSSLEPLKQKINVIDGLYVKALTNQ
                     GIHPAQTGSLLSGEHITKGALIHSGISIDQMIASRVGQDTPQSSIVLACEQPMTGYHE
                     TNFSLAYSSHLSWQTPDSPVPVEVYPSLAWDSLFDNRGSLLNLSVLDRVKDRAQDLSR
                     KISATDRGKLDEYLTSVREVEKRVEIMRKAKDSADDNAKGKNMSAALMERPASGLPED
                     LRQHAKLMCDIIAIAFQTNKSRVASLIISRDLSAMYYPFLDVKEGHHAASHDNSSEGY
                     ERIANFHVSQYAYLASKLDSMKEGNGTVLDNSCLMFMSNMFVGRKHDNSRLPLVLAGG
                     LGGTLQTGRTLNYLQDGEDKRKMCSLYLSLMDRFGVKLDQFGDATTRLERI"
     gene            complement(1692..>2551)
                     /locus_tag="VNN98_09140"
     CDS             complement(1692..>2551)
                     /locus_tag="VNN98_09140"
                     /inference="COORDINATES: protein motif:HMM:NF019256.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF1588 domain-containing protein"
                     /protein_id="HWM62307.1"
                     /translation="ELRQAMFEEPIRFFVDVVRRDRSVLDFIYGDHTFVNPVLAAHYG
                     MPALDVGPNEWLRIDDAHRYGRGGLLPMSVFLTKNAPGLRTSPVKRGNWVVQKVLGIR
                     VPPPPPVVPELPSDESKTDKPIREMLAEHHKNPFCAGCHLRFDSFGLAFEGYGPVGDA
                     RTKDLAGRPIDATATYPGSFEGDGVTGLQTFIREHRQNNFVENLSRKLLAYALNRSLQ
                     LSDESLVDKMKASLLADGYKFRALVETIVVSPQFLNKRLEENAEIKHAALEPANIEQI
                     KAYLRPTSR"
BASE COUNT          483 a          783 c          786 g          499 t
ORIGIN      
        1 ggtggcggcc ccgattacgc cgccggcaac cgcgcctgcc gcagcgccca ggccggcatt
       61 tccggcggcg ccaccaatca ccgcgccgcc agctgcaccc aacaaggcgc cgctggcaag
      121 ccgatcaccc ggatcgctgc cgcaaccggc gaccagcaag gtcgccgcaa aacccaatat
      181 cactgtcgca cgcatatctg gctcccttat cgtgttgagg aaaacgcgtc atgggagccc
      241 gcgttccggc tttgggagat ttgggccaaa aggtggcaaa gcggcggaac catagtcctg
      301 tcctacagga accacagatg ataccgcacg gccttttgcg cttggccttt agatgcgttc
      361 cagccgcgtg gtggcgtcgc cgaactgatc cagcttcacg ccgaaccggt ccatcagcga
      421 cagatacagg ctgcacattt tgcgcttgtc ttcgccatcc tgcaggtagt tcagcgtccg
      481 ccccgtctgc aaggtgccgc ccagcccgcc cgccaacacc agcggcaacc ggctattgtc
      541 gtgcttgcgg ccgacaaaca tgttggacat gaacatcagg cagctattgt ccagcacggt
      601 gccgttgcct tccttcatac tgtccagctt ggaggcgaga taggcgtact ggctgacatg
      661 gaaattggcg atgcgctcat agccttccga ggaattgtcg tggctggcgg catggtggcc
      721 ttccttcacg tccaggaagg gatagtacat cgccgacaaa tcgcgcgaga tgatcagcga
      781 ggccacccgg ctcttgttgg tctggaaggc gatggcgatg atgtcgcaca tcagcttggc
      841 atgctggcgc agatcttccg gcaagccgct ggccgggcgt tccatcaggg cggcggacat
      901 gttcttgccc ttggcattgt cgtcggcgct gtccttggcc ttgcgcatga tctccacgcg
      961 cttttcgacc tcccgcacgc tggtaagata ttcatccagc ttgccgcggt cggtggcgct
     1021 gatcttgcgc gacaggtcct gggcgcggtc cttgacccgg tccagcacac tgagattgag
     1081 caggctgccg cgattgtcga acaggctgtc ccaggccagc gagggataaa cctcgaccgg
     1141 caccggggaa tccggcgtct gccaggacag atgcgaactg taggccagcg aaaaattggt
     1201 ctcgtgatag ccggtcatcg gctgttcgca ggccagcacg atggacgatt gcggcgtgtc
     1261 ctggccgacg cggctggcga tcatctggtc gatactgatg ccggaatgaa tcagcgcgcc
     1321 cttggtgatg tgttcgcccg acagcaggct gccggtctgg gcgggatgga tgccctgatt
     1381 ggtcagcgcc ttcacataca ggccgtcaat gacgttgatc ttctgcttca gcggttccag
     1441 cgacgacagt gtcttgctga gcttcatgtc ggcgccgttg ccttcggcgc tccaataatt
     1501 ctcattgatg ccgcagccca ggaacaccac gccgaaacgc ttggggaaat ccgattgcgc
     1561 ggccacggca ttgaccgatt ccagccaggg cagcgccatg gtgcagccgg ccccgcgcag
     1621 gaccacgcgg cgggaaaagg ccttggaaac gaaagacggc ttgtcggtcg aatgaggcat
     1681 attaattccc tctatctgga agtgggcctg agataggcct tgatctgttc gatattggcg
     1741 ggctcaagcg cggcatgttt gatctcggca ttctcttcaa ggcgcttgtt gaggaactgc
     1801 gggctcacca caatggtctc gaccagcgcg cggaacttgt agccgtcggc cagaagactg
     1861 gctttcatct tgtccaccag cgattcatcg gaaagctgca gcgagcggtt caaggcatag
     1921 gccagcagct tacggctgag attttccacg aagttgttct ggcgatgctc gcggatgaag
     1981 gtctgcaggc ccgtcacgcc gtcgccttca aagctgccgg gataggtggc cgtggcatcg
     2041 atgggccgcc ccgccaagtc cttggtgcgc gcatcgccca ccgggccata gccttcaaaa
     2101 gccaggccga aggaatcgaa ccgcagatgg cagccggcgc agaaaggatt cttgtgatgc
     2161 tcggccagca tctcgcggat gggcttgtcg gtcttggatt catcgctggg cagttccggc
     2221 accaccggtg gcggcggcgg cacgcgaatg ccgagtacct tctgcaccac ccagttgccg
     2281 cgcttcaccg ggctggtgcg caggccgggc gcgttcttgg tcaggaagac cgacatgggc
     2341 aggagcccgc cgcgtccata gcggtgagcg tcatcgatcc gcaaccactc gttcggcccc
     2401 acatcgaggg cgggcatgcc gtagtgcgca gccaggactg gattgacgaa cgtatgatcg
     2461 ccgtagatga aatcgagcac cgagcgatcc cgtcgcacga catcaacgaa gaaacggatc
     2521 ggctcttcaa acatcgcctg gcgcaattcg t
//
LOCUS       DATMDK010000475         2304 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2740692,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000475 DATMDK010000000
VERSION     DATMDK010000475.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2304)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2304)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2304
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2740692"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..702
                     /locus_tag="VNN98_09145"
     CDS             <1..702
                     /locus_tag="VNN98_09145"
                     /inference="COORDINATES: protein motif:HMM:NF012607.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-hydroxyacid dehydrogenase"
                     /protein_id="HWM62308.1"
                     /translation="PVEYARSKGIPVTNTPDVLNDDVADLAIALMIMTARRLVASDTY
                     VRTGKWPACGEYPLAQKASRKRVGILGMGRIGKEIAKRAEAMNNTVAYHTRRPAADVP
                     YQHYANLVELAKDSDFLLVIIPSTPETQKIVSKAVIEALGPSGILVNVARGAVVDEDA
                     LVEALKSGKLGGAGLDVFAHEPQVPPELFAMDNVVLRPHVGSATNETRRAMSQLVLDN
                     LDAKFAGKPLLTEIK"
     gene            complement(802..1521)
                     /locus_tag="VNN98_09150"
     CDS             complement(802..1521)
                     /locus_tag="VNN98_09150"
                     /inference="COORDINATES: protein motif:HMM:NF014582.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ZIP family metal transporter"
                     /protein_id="HWM62309.1"
                     /translation="MTALIVMLIALGACAATMTGGFLSLKLAGRLPLVMGFSAGAVIG
                     VAFFDLAPEALEAGKGLYEPRVLLAIAALGFFLYTVLDRLVARHDCEGQANPTRGMMG
                     AASFSAHSVLDGFALGIAFQASREIGLIVAAAVLAHDFADGLNTVNVVVKNGGTRRFA
                     LRWLAVDAIAPVVGASLSLLVTTGPGLLAILLALFCGFFLHIGASGLLPESHRAYPRP
                     ATTVATLLGAGFLYAVTALVR"
     gene            complement(1552..>2304)
                     /locus_tag="VNN98_09155"
     CDS             complement(1552..>2304)
                     /locus_tag="VNN98_09155"
                     /inference="COORDINATES: protein motif:HMM:NF013961.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglutaminase family protein"
                     /protein_id="HWM62310.1"
                     /translation="WFSIDQPHTHLEVLAESRVTVDAAPERISRDSLAWEDARARLEN
                     PQSDDERDVAQYLFDSPLTKFHSDIAAYGSVSFPPRRPLLAGAMELMNRIHKDFRYDT
                     TVTDVTTPVDRVFEIRAGVCQDLAHVGITAMRAVGLPARYVSGYLLTAPPPGKPRLLG
                     ADASHAWFSVWAPPFGWVDLDPTNDLVVGESHVTASWGRDYGDVAPVAGIILGGHDHV
                     VEVGVDVIPVDQADPQLPHIAPIRIVPEDPAR"
BASE COUNT          470 a          747 c          738 g          349 t
ORIGIN      
        1 ccggtggagt atgcgcgctc caagggcatt ccggtcacca acacgccgga tgtgctcaat
       61 gacgatgtcg ccgatctggc gattgcgctg atgatcatga cggcgcggcg gctggtggcc
      121 tccgatacct atgtgcgcac cggaaaatgg ccggcctgtg gggaatatcc gctggcgcaa
      181 aaggccagcc gcaagcgggt cggcattctg ggcatgggcc gcatcggcaa ggaaatcgcc
      241 aaacgcgccg aggcgatgaa caatacggtg gcctatcaca cccgccgccc ggcggccgac
      301 gtgccctatc aacattatgc caacctggtc gaactggcga aggacagcga cttcctgctg
      361 gtgatcattc cctcgacgcc cgaaacgcag aagatcgtca gcaaggcggt gatcgaggcg
      421 ctgggcccca gcggcattct ggtgaatgtg gcgcgcggcg cggtggtgga cgaggatgcg
      481 ctggtcgaag cgctgaaatc cggcaagctg ggcggcgcgg ggctggatgt gttcgcccac
      541 gaaccgcagg tgccgcccga gttgttcgcc atggacaatg tggtgctgcg accccatgtc
      601 ggcagcgcca caaatgaaac ccgccgcgcc atgagccagc tggtgctgga caatctggat
      661 gcgaaattcg ccggcaagcc gctgctgacg gaaattaagt agttcctctc actgtcattc
      721 ccgcgcaagc gggaatccaa cttcgggcaa ccgagccgaa tagaaagttg gatgcccgct
      781 ttcgcgggca tgacaagaag gctaacgtac cagcgccgtc accgcataaa gaaagcccgc
      841 gcccagcaaa gtcgccaccg tggtggccgg gcgcggatag gcgcggtgac tttccggcag
      901 cagcccgctg gcgccgatgt gcaggaaaaa gccgcagaac aaggccagca aaatcgccag
      961 caggccgggg cccgtcgtga ccagcaggct caggctggcg ccgacgaccg gggcgatggc
     1021 gtccaccgcc aaccagcgca aagcgaaacg tctggtaccg ccattcttca ctaccacatt
     1081 cacggtgtta aggccgtcgg cgaagtcatg cgccagcacg gcggcggcca cgatcaatcc
     1141 gatctcgcgg ctggcctgga aggcgatgcc aagcgcaaaa ccatccagca cgctatgggc
     1201 ggaaaaactc gccgccccca tcatgccgcg cgtgggattg gcctggccct cgcagtcatg
     1261 ccgcgccacc agccggtcca gcacggtgta gagaaagaag cccagcgccg cgatggccag
     1321 caggacgcgc ggttcgtaca ggcccttgcc ggcctccagc gcttcaggcg ccaggtcgaa
     1381 aaaagcgacg ccgattaccg cgccggccga aaagcccatc accagcggca atcgacccgc
     1441 cagcttcaaa gacaagaacc cgccggtcat ggtcgccgcg caggcgccga gcgcgatcag
     1501 catcacgatc aaggcagtca tggaaacagg tccgaaaaag ccgcgccttg cttatcgcgc
     1561 cgggtcttcc gggacaatcc tgatcggggc aatgtggggc aattggggat cggcctggtc
     1621 caccgggatt acgtccacgc ccacttccac cacatggtca tggccgccca ggatgatgcc
     1681 cgccaccggc gccacatcgc cataatcgcg gccccaggag gcggtgacat ggctttcgcc
     1741 caccaccaag tcgttggtgg gatccagatc cacccagccg aagggcgggg cccagacgga
     1801 aaaccaggca tggctggcat cggcgccgag cagccgcggc ttgcccggcg gcggcgccgt
     1861 caacagatag cccgagacat agcgcgccgg caacccgacg gcgcgcatcg ccgtgatgcc
     1921 gacatgggcc aggtcctggc ataccccggc gcgaatctcg aacaccctat ctaccggggt
     1981 ggtgacatcg gtgacggtgg tgtcgtagcg gaaatccttg tggatgcggt tcatcagctc
     2041 catggcaccg gccagcagcg ggcggcgcgg cggaaaactc acactgccat aggcggcgat
     2101 gtcgctgtga aatttggtca ggggcgaatc gaacagatat tgcgccacgt cgcgttcgtc
     2161 gtcgctctgc gggttttcca gcctggcccg cgcatcttcc caggccaggc tgtcgcgcga
     2221 aatccgctcc ggcgcggcgt ccaccgtgac tctgctttcc gccagcactt ccagatgggt
     2281 gtgcggctgg tcgatggaaa acca
//
LOCUS       DATMDK010000476         3056 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_3196355,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000476 DATMDK010000000
VERSION     DATMDK010000476.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3056)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3056)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3056
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3196355"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..890
                     /locus_tag="VNN98_09160"
     CDS             <1..890
                     /locus_tag="VNN98_09160"
                     /EC_number="2.3.1.16"
                     /inference="COORDINATES: protein motif:HMM:TIGR01930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003985 - acetyl-CoA C-acetyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006631 - fatty acid metabolic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="acetyl-CoA C-acyltransferase"
                     /protein_id="HWM62311.1"
                     /translation="GTDIAVGAGVESISLVQMGGINLSHFTEEHLLSVKPALWMTMIE
                     TAEIVAERYGVSRERQDQYALQSQQRTAAAQAAGRYKDEIVALATKMKKLDKVSGAES
                     LIDVTVDHDECNRPDTTLEGLAALKPVHAGGQQVAQGKFITAGNASQFADGASACVLM
                     SGEAAAKKNIKPLGIFKGFAAVGVEPEEMGIGPVLAVPRLLARHGLTVDDIDLWELNE
                     AFASQTLYCMDKLGLDPAKTNVNGGAISIGHPYGMTGARLTGHLLLEGRRRGAKLGVV
                     TMCIGGGMGAAGLFEILSA"
     gene            893..1555
                     /locus_tag="VNN98_09165"
     CDS             893..1555
                     /locus_tag="VNN98_09165"
                     /inference="COORDINATES: protein motif:HMM:NF012415.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CAP domain-containing protein"
                     /protein_id="HWM62312.1"
                     /translation="MTRATFFLLTALVLGACTSLDAVAPSPVVMPDPKTQMGALETRI
                     AILVEEQRHRLDPKAKSLAIDPELSKIARARASDMAAKNYLAHAAPNGDTSASLLMAQ
                     DEQWQGLLGENLAAQHYTKLGGVTVNEFAQRFLDEWLKSPPHRDNMVFASYDHAGVGA
                     AVNGDTVYVAVLFSTDMGLKPRGPAGPANAVTSWESPAAAAATPPPAGDPLRLRGAVG
                     AQ"
     gene            1817..>3056
                     /locus_tag="VNN98_09170"
     CDS             1817..>3056
                     /locus_tag="VNN98_09170"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM62313.1"
                     /translation="MRAELPWNVAGIPPEAREAARAAARREGLSVGEWLTRRILRSFS
                     GMEEDAPMPYESRAPSGAPLDSWGLPPSASSRRDTEEMMARVGRSENESNEAWRRIED
                     QLRGLGRRLDSSERSHGESNRVISRTAQEMNISAREQAQAFDQLGLNVMSLNERLERL
                     ERGAANDGIKEAVKALHQGLSRLADQITATANNSATQVVQLTTNLEQLAGRVGQARVD
                     SEDAAKALDQRIDASERALGERIGSSERTLGERLDNSERTLDARLSATEKTAQFNTNA
                     LDHALEKIEASANQRATDQVENQRRTAAHEESLNRLEDSIARLEMRLPDAEFERRLDG
                     IERSVSGMADRLEQHDPTEKFDASMQALSYRLESLEKDHVDLLAELRTKLRPVEPPAF
                     EAPRPQEAHRYEPPSAFEAPP"
BASE COUNT          589 a         1009 c          980 g          478 t
ORIGIN      
        1 acggcaccga catcgcggtg ggcgcgggcg tggaatccat ctccctggtg cagatgggcg
       61 gtatcaatct cagccatttt accgaagaac atctgttgag cgtcaaaccc gcactgtgga
      121 tgaccatgat cgagaccgcg gagatcgtgg ccgagcgcta cggcgtcagc cgcgagcgcc
      181 aggaccagta tgccttgcag agccagcaac gcaccgccgc ggcgcaagcg gccggcagat
      241 acaaggatga aatcgtcgcc ctggccacca agatgaagaa gctggacaag gtcagcggcg
      301 ccgaaagcct gatcgatgtc acggtggatc atgacgaatg caaccgtccc gacacgaccc
      361 tggaagggtt ggcggcgctg aagccggtgc atgccggcgg ccagcaggtc gcgcaaggca
      421 agttcatcac cgccggcaac gcctcgcagt tcgccgatgg cgcatcggct tgcgtcctga
      481 tgagcgggga ggccgcggca aagaagaaca tcaagccgct ggggatcttc aagggcttcg
      541 cggcggtggg cgtggaaccc gaggaaatgg gtatcggtcc ggtgctggcg gtgccgcggc
      601 tgctggcccg ccacggcctg acagtggacg atatcgacct gtgggaactc aacgaggctt
      661 tcgccagcca gaccctttac tgcatggaca agctcggcct ggaccccgcc aaaaccaatg
      721 tgaatggcgg cgccatctcc attggccatc cctatggcat gaccggggca cgccttaccg
      781 gccatctgtt gcttgagggc cggcggcgcg gcgccaagct gggcgtcgtc accatgtgca
      841 tcggcggcgg catgggcgcg gccggcctgt tcgagatatt gtccgcctga acatgactcg
      901 cgctactttc tttcttttga ccgcattggt gctgggagcc tgcaccagcc tcgatgccgt
      961 ggcgcccagc cccgtcgtca tgccagatcc gaagactcag atgggagcgc tggaaacccg
     1021 catcgccatc ctggtcgagg agcagcgcca ccgtctggac ccgaaagcca aatcgctggc
     1081 gatcgatccg gaactgtcca agatcgcgcg ggctcgtgcc agcgacatgg cggccaagaa
     1141 ttatctcgct catgccgccc ccaatggcga cacctccgct tcgctgctga tggcgcagga
     1201 cgaacagtgg cagggcctgt tgggagaaaa tcttgcagcg cagcattaca ccaagctggg
     1261 cggtgtgacg gtgaatgaat tcgcccagcg cttcttggac gaatggctga aaagcccgcc
     1321 ccaccgcgac aatatggtct tcgccagtta cgaccatgcc ggggtgggcg cggcggtgaa
     1381 tggcgacacg gtctatgtcg cggtgctgtt ttccaccgat atggggctga agccgcgcgg
     1441 ccctgcgggc cccgccaatg ccgtcaccag ctgggaaagc cctgccgccg ccgccgccac
     1501 gcccccgccg gcgggcgatc cgctacggct ccggggcgcc gtcggcgcgc aataatgccc
     1561 cctccggcct tcgctggctc aagagccagc tacggccacc tccccctata caagcgcgct
     1621 aacgcgcgcg ggggaggtcg gtttacttac gcgtctggaa agccgattca cttggaatta
     1681 agctaaccaa ctcaagtatc tgtgtatgac tgatcataga gctgcccgga ccgccggtcg
     1741 tatggtcaac attcctttac actatatctg gcccccggta ctttctatag cgggtgtgcg
     1801 gtgccagtga gtcgaaatgc gcgcagagct tccctggaat gttgccggca tcccgccaga
     1861 agcgcgggag gccgcgcgcg cggctgcccg gcgggaaggc ctgtcggtcg gcgaatggct
     1921 gacccggcgc attttacgca gtttttccgg catggaagag gacgccccca tgccttatga
     1981 gagccgcgcc ccgtccggcg cccccctgga cagctggggt ctgcccccct ccgcttccag
     2041 ccgccgcgac actgaagaaa tgatggcccg ggtcggccgc agcgaaaacg aatcgaacga
     2101 ggcctggcgc cgcatcgagg atcagttgcg cggcctgggc cgccgcctgg attccagcga
     2161 gcgcagccac ggcgaaagca accgcgttat ctcccgcacc gcccaggaga tgaacatctc
     2221 cgcccgcgaa caggcccagg ccttcgacca gcttggcctg aatgtgatgt cgctgaacga
     2281 acggctggag cggctggaac gcggcgccgc caatgacggc atcaaggaag cggtcaaggc
     2341 gctgcatcag ggcctgtccc gcctggccga ccagatcacc gccaccgcta acaattccgc
     2401 cacccaggtg gtgcagctca ccaccaacct ggaacagctg gccgggcgcg tcggtcaggc
     2461 gcgggtggat tccgaagacg ctgccaaggc gctggaccag cgcatcgatg ccagcgagcg
     2521 ggcactgggc gagcgcatcg gcagcagcga gcggacgctg ggtgagcgcc tcgacaatag
     2581 cgagcggacg ctggatgcgc gcctgtccgc caccgagaaa accgcacagt tcaataccaa
     2641 cgccctggac catgcgttgg agaagatcga agcttccgcc aaccagcgcg ccaccgacca
     2701 ggtggagaac cagcgccgca ctgcggcgca tgaggaaagt ctcaaccggc tggaagactc
     2761 catcgccagg ctggaaatgc gcctgcctga cgccgagttc gaacgccgcc tggacggtat
     2821 cgagcgctcg gtcagcggca tggccgaccg gctggagcaa cacgacccca ccgagaaatt
     2881 cgacgcctcg atgcaggcgc tgtcctaccg gctggaatcg ctggagaagg atcacgtcga
     2941 tctgctggcg gaactgcgca ccaagctgcg tcccgtcgag ccgcccgcct ttgaagcgcc
     3001 gcgcccccag gaggcgcacc gctacgagcc accgtccgcc ttcgaggcgc cgccgt
//
LOCUS       DATMDK010000477         2521 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_1142648,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000477 DATMDK010000000
VERSION     DATMDK010000477.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2521)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2521)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2521
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1142648"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            152..1042
                     /gene="miaA"
                     /locus_tag="VNN98_09175"
     CDS             152..1042
                     /gene="miaA"
                     /locus_tag="VNN98_09175"
                     /EC_number="2.5.1.75"
                     /inference="COORDINATES: protein motif:HMM:TIGR00174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0052381 - tRNA dimethylallyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (adenosine(37)-N6)-dimethylallyltransferase
                     MiaA"
                     /protein_id="HWM62314.1"
                     /translation="MKFDAVLIAGPTASGKSHHALALAQEIGGVVINADSMQVYREAP
                     ILTAQPSAQDKARLPHLLYGHVSAREVYSVGRWRSDAITALAEARAMQRTPIFVGGTG
                     LYFTALTDGLADIPPTPPEIRDAARALLDDIGVEALHATLTDRDPLTASRLRPSDPQR
                     VLRAFEVLEATGRPLAEWQSAPAEPVLKDAKFAAFVLDPPRNELRLRIAARFEAMLEA
                     GGLEEARALEGLDPVLPAAKLLGLRPLQTLAAGTLTRAEALDAAITGTRQFAKRQMTW
                     FRHRMPHYIWFDPLVSNLIT"
     gene            1251..>2521
                     /gene="ilvB"
                     /locus_tag="VNN98_09180"
     CDS             1251..>2521
                     /gene="ilvB"
                     /locus_tag="VNN98_09180"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: protein motif:HMM:TIGR00118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005948 - acetolactate synthase complex
                     [Evidence IEA];
                     GO_function: GO:0003984 - acetolactate synthase activity
                     [Evidence IEA];
                     GO_process: GO:0009097 - isoleucine biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0009099 - valine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="biosynthetic-type acetolactate synthase large
                     subunit"
                     /protein_id="HWM62315.1"
                     /translation="MDKDDTLQGAALAAEATPTQMEWAMTGAQMVIRALKDQGVTHIF
                     GYPGGAVLPIYDALFQVEGITHVLVRHEQGAVHAAEGYARSTGKPGVVLVTSGPGATN
                     AVTGLTDALMDSIPLVMLSGQVPTHLIGTDAFQECDTVGITRPCTKHNWLVKDVNELS
                     RVLHEAFQIATTGRPGPVVVDIPKDVQFQSGTYHGPQAVHHRTYKPKTDPDLSAIVKA
                     VEMMAAAERPIIYAGGGIINSGPEAAKLLRELVDLTGFPITSTLMGLGAFPASRQEWL
                     GMLGMHGTWEANHAMHDCDLMICLGARFDDRCTGKVSSFSPGSKKIHLDIDASQINKI
                     VRVDLPIVADAAGGLREMIRFWKAGKHKVQAEPLKAWWKQIDQWRTKKSLSYRNSDSI
                     IKPQYAIDRLYALTKHRDDVFITTEVGQHQM"
BASE COUNT          477 a          804 c          800 g          440 t
ORIGIN      
        1 tgcgtcgctg gcggcgatgg gaagatcgaa ggcgtgatgg ggcgacagga tcgctgccgg
       61 cccgttgtcc aagccgcgaa acaggcctgg ttcggcgccc ttgccgatga cgttgagaac
      121 aaacattgtg caagcccaag agaaggcaaa aatgaaattt gacgccgtcc ttattgcagg
      181 gcccaccgca agcggcaagt cgcaccacgc gctggccttg gcgcaggaga tcggcggcgt
      241 ggtgatcaat gccgattcca tgcaggtcta tcgcgaggcg ccgatcctga cggcgcaacc
      301 gtcggcacag gacaaggcgc ggctgccgca tctgctttat ggccatgtca gcgcgcgcga
      361 agtgtattcg gtggggcgct ggcgcagcga tgccataact gcgctggccg aggcgcgggc
      421 catgcaacgc acgcccatct tcgtgggtgg cacgggcctg tatttcaccg ccctgaccga
      481 cggtctggcc gacattccgc cgacaccgcc cgaaatccgc gatgccgccc gcgctctgct
      541 ggacgatatc ggcgtcgaag ccttgcacgc caccttgacc gaccgtgatc ccttaaccgc
      601 gtcccggctg cgcccctccg atccgcagcg cgtgctgcgc gcctttgaag tgctggaagc
      661 gacggggcgg ccgctggcgg aatggcaaag cgcgccggca gaaccggtac tgaaagacgc
      721 caagttcgcc gcctttgtgt tggatccgcc gcgcaacgaa ttgcggctgc gcatcgccgc
      781 ccggtttgag gcgatgctgg aggcgggcgg gctggaggag gcgcgcgcac tggaggggct
      841 cgaccccgtg ctgccggccg ccaagctgct gggattgcgt ccgctgcaga ctttggccgc
      901 gggaaccctg acccgggccg aagcgctgga tgccgccatc accggcacgc ggcagttcgc
      961 caaacgccag atgacgtggt ttcggcaccg tatgccacat tatatctggt ttgaccctct
     1021 cgttagtaat ttaattacgt aattccagca tatacttgcc tgaaattgct tgacgccgcg
     1081 ccgcagcatc tttagcttcc gccgccatga aagggatgct cgtaattatc cggccgctgg
     1141 ccccgcgaag ctgacgcttc gttggtgggc agagcggcca tgcggacaag gggcggaaac
     1201 gcccctttat ctttggtgcg gttacgagca tgggattgca gggacggacg atggacaagg
     1261 acgacacatt gcaaggcgcg gccctggccg ccgaggcaac cccgactcaa atggagtggg
     1321 cgatgaccgg cgcgcagatg gtgatccgcg ccctcaagga ccagggtgtc acccacatct
     1381 tcggctatcc cggcggcgcg gtgctgccga tctatgacgc gctgttccag gtcgaaggca
     1441 tcacccatgt gctggtgcgc cacgaacaag gcgcagtcca tgccgccgaa ggctatgccc
     1501 gctccaccgg caagcccggc gtggtgctgg tcacctccgg tcctggcgcc accaacgccg
     1561 tcaccggcct gaccgacgcg ttgatggatt ccattcccct ggtgatgctg tcgggccaag
     1621 tgcccaccca tctgatcggc accgacgctt tccaggaatg cgacacggtc ggcatcaccc
     1681 ggccctgcac caagcacaat tggctggtga aggacgtcaa cgaactgtcg cgcgtgctgc
     1741 acgaggcgtt ccagatcgcc accaccggcc gcccaggccc cgtggtagtg gacatcccca
     1801 aggacgtcca gttccagagc ggcacctatc acgggccgca ggccgtgcat caccgcacct
     1861 acaagcccaa gaccgatccc gacctgtcgg cgatcgtcaa ggcggtggag atgatggcgg
     1921 cggccgagcg cccgatcatc tatgccggcg gcggcatcat caattccggc ccggaagcgg
     1981 ccaagctgct gcgcgaactg gtggacctga ccggctttcc catcacctcc accctgatgg
     2041 ggctgggcgc ctttccggcg tcacggcagg aatggctggg gatgctgggt atgcacggta
     2101 cctgggaagc caatcacgcc atgcatgatt gcgacctgat gatctgcctg ggggcgcgct
     2161 ttgacgaccg ctgcaccggc aaggtcagtt ccttttcgcc ggggtcgaaa aagattcact
     2221 tggatatcga tgcctcgcag atcaacaaga tcgtgcgggt ggatttgccc atcgtggccg
     2281 atgctgcagg cggcttgcgc gaaatgatcc gcttctggaa ggccggcaag cacaaggtcc
     2341 aggccgaacc gctgaaagcc tggtggaagc agatcgacca gtggcggacc aagaagtcgc
     2401 tgtcgtaccg caattcggac agcatcatca aaccgcaata cgccatcgac cggctctatg
     2461 ccctgaccaa acatcgcgac gatgttttca tcaccactga ggtgggccag catcagatgt
     2521 g
//
LOCUS       DATMDK010000478         3432 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_2513900,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000478 DATMDK010000000
VERSION     DATMDK010000478.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3432)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3432)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3432
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2513900"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2081
                     /gene="bamA"
                     /locus_tag="VNN98_09185"
     CDS             <1..2081
                     /gene="bamA"
                     /locus_tag="VNN98_09185"
                     /inference="COORDINATES: protein motif:HMM:TIGR03303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamA"
                     /protein_id="HWM62316.1"
                     /translation="DGATGTLTIRVTENPIVNQVVFEGNSKVSDKDLTKEVQIKPRAV
                     FTRAKIQADVQRIIELYRRNGKFAARVDPQIIQRPQNRVDLIFSITDGPTTGVSKINF
                     IGNKIFDSDTLRGQIATEESRWWKFLASNDNYDPDRLSFDRESLRRYYINRGYADFKV
                     LSAVAQLTPDRKSFYINFTVEEGVRYHFGKVVIDSKIRELPAAQLMPSVDIKEGDIYS
                     QEDVQKAIDALTNAAGTKGYAFAQVHPRIKRDPKTRIIDLGFEIEQGPRVYIEKINIS
                     GNTRTLDKIIRRQFRLQEGDAFNRVLIDRSRTRIRGLGFFKQVDVKNVPGSQPDRTNL
                     TVDVTEQSTAALSVGLGYSSTTSLLGEVSYTDSNWFGRGQNLRISLQASYITKQALFS
                     FTEPYFLDRELAAGFDIYETQTNYQQATYQSNTTAGVLRLGFPISEFNSVSLSYTYQI
                     QDVRPYSGAPLDVQLAAGTRHGSIVGFTYAYADLDDIRKPTSGATFSFTQAIAGFGGN
                     LKYLQTGATFGGYTPMFDGAIVSSLTGRFGYITGYGGESVPFEDRFFDGGDTFRGFAL
                     AGIGPRDTVAPSNTGALGGTVRAIGSAQMRFPSLLPESYGVGLSLFTDFGTMGRLDTL
                     GAGRQCTGAQYSGIGTCVKDNLAFRGSAGVSVTWKSPFGPVQIDLGLPYAKTAYDRPQ
                     IIHFSTATGY"
     gene            2083..2664
                     /locus_tag="VNN98_09190"
     CDS             2083..2664
                     /locus_tag="VNN98_09190"
                     /inference="COORDINATES: protein motif:HMM:NF015871.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OmpH family outer membrane protein"
                     /protein_id="HWM62317.1"
                     /translation="MKKTLLALALAGLAISVTPALITPAWADPPQPKIVVIDRAAIMQ
                     FSKVGQDIARQIQAAANQAKADLQGQGKALQAEGRALQQQVAILAPDVKAKRLAAFQA
                     REQSLQGAAQRKDEQLKAAFAQGRAAMENALGPILQQLVKERGANLVLDKQAVVFATQ
                     SGFDVTADAITRLNQKLPAFKINMNAPPPAPKQ"
     gene            2681..>3432
                     /locus_tag="VNN98_09195"
     CDS             2681..>3432
                     /locus_tag="VNN98_09195"
                     /EC_number="2.3.1.191"
                     /inference="COORDINATES: protein motif:HMM:NF002060.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016410 - N-acyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009245 - lipid A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-(3-hydroxymyristoyl)glucosamine
                     N-acyltransferase"
                     /protein_id="HWM62318.1"
                     /translation="MADPRFFENLGPFSLAQICEKSGTPLPAGADGARAFFDLADLAG
                     AGPQHVTFFSGVAILRDVFAGSGAGLCLVPSQPSSAKPRPQAPPGMIVVETASVGRAF
                     AAIARLFYPVHSQPHWQQKQAVSPEARIGKDVELGACVVIGPGAEIGDGTRLGPGTVV
                     GPGVAIGRACEIGANVTISHAYIGDRVTILPGAHIGQPGFGFTSDGEGYLKVPQLGRV
                     IVQDDVEIGAATTIDRGALGDTVIGEGSKLDNL"
BASE COUNT          650 a         1180 c         1013 g          589 t
ORIGIN      
        1 tcgacggcgc caccggcacg ctgaccatcc gcgtcaccga gaatccgatc gtcaaccaag
       61 tggtgttcga gggcaattcc aaggtctccg acaaggacct caccaaggaa gtgcagatca
      121 agccgcgcgc cgtcttcacc cgcgccaaga ttcaagccga tgtgcagcgc atcatcgaac
      181 tgtaccgccg caacggcaag ttcgccgccc gggtggaccc gcagatcatt cagcggccgc
      241 agaaccgcgt cgatttgatc ttctccatca ccgacggtcc caccaccggc gtcagcaaga
      301 tcaatttcat cggcaacaag atattcgaca gcgacacgct gcgcggccag atcgccaccg
      361 aggaaagccg ctggtggaaa tttcttgcca gcaacgacaa ttacgatccc gaccgtctgt
      421 cgttcgaccg cgaatccctg cgccgctatt acatcaatcg cggctatgcc gacttcaagg
      481 tgctgagcgc ggtggcccag ctcacccccg accgcaaaag cttctatatc aacttcacgg
      541 tggaggaggg cgtccgctat catttcggca aggtcgtcat cgactccaag atccgcgaac
      601 tgccggccgc ccagctcatg ccttcggtcg atataaaaga gggcgacatc tattcccagg
      661 aagacgtgca aaaggcgatc gacgccctga ccaacgcggc gggcaccaag ggttacgcct
      721 tcgcgcaagt ccatcctcgc atcaagcgcg atcccaagac caggatcatc gatctgggct
      781 tcgagatcga gcaggggccg cgggtctata tcgagaagat caacatttcg ggcaacaccc
      841 gcaccctgga caagatcatc cgccgccagt tccgcctgca ggaaggcgat gccttcaacc
      901 gcgtgctgat cgaccgctcg cgcacccgta tccgcgggtt ggggttcttc aagcaagtgg
      961 acgtcaagaa tgtgccgggc agccagccgg accgcaccaa cctgacggtg gatgtcaccg
     1021 aacagtccac cgccgcgctg tcggtggggc tgggctattc ctccaccacc tcgctgctgg
     1081 gcgaagtcag ctataccgac tccaactggt tcgggcgcgg ccagaatctg cggatctcgc
     1141 tacaggcttc ctacatcacc aagcaggcgc tgttcagttt caccgaaccc tacttcctgg
     1201 accgcgaact ggcggcgggc ttcgatatct acgaaaccca gaccaattac cagcaggcca
     1261 cctatcagag caacaccacc gcgggggtgc tgcgcttggg ctttcccatt tcggaattca
     1321 attcggtgtc gctgagctac acctaccaga tccaagatgt ccgcccctat tccggtgcgc
     1381 cgctggacgt gcagctggcg gccggtacgc ggcacggctc catcgtaggt ttcacctacg
     1441 cctatgccga cctggacgat attcgcaagc cgacctccgg cgcgaccttc tccttcaccc
     1501 aagccatcgc cggcttcggc ggtaacctga aatacctgca gaccggcgcc accttcggcg
     1561 gctacacccc gatgttcgac ggcgccatcg tctccagcct gaccggccgc ttcggctata
     1621 tcaccggcta tggtggcgag tcggtaccgt tcgaggatcg cttcttcgac ggcggcgaca
     1681 cgttccgcgg cttcgccctg gccggtatcg gcccgcgcga taccgtcgcg cccagcaaca
     1741 ccggcgccct gggcggcacg gtgcgcgcca tcggctcggc gcagatgcgc tttccctccc
     1801 tgctgccgga gagttatggt gtcgggcttt cgctgttcac cgacttcggc accatgggcc
     1861 gtcttgatac gctgggtgcc ggccggcaat gtaccggtgc gcaatattcc ggcatcggca
     1921 cttgcgtgaa agacaatctg gccttccgcg gctcggccgg cgtcagcgtg acctggaaat
     1981 cgcctttcgg cccggtccag atcgacctcg gcctgcctta tgccaaaacc gcctacgaca
     2041 gaccccagat catccacttc agcactgcca caggatacta agatgaaaaa aaccctcctc
     2101 gcgctcgctt tggcgggcct cgcaatctcc gtcaccccgg cgcttatcac cccggcctgg
     2161 gccgatccgc cccagcccaa gatcgtggtg atcgaccgcg cggcaatcat gcagttctcc
     2221 aaggtggggc aggatatcgc ccgccagata caggcggcgg ccaaccaggc caaggccgac
     2281 ctgcagggcc aaggcaaggc actgcaggcc gagggccgcg cgctgcaaca gcaggtggcg
     2341 atcctggccc ccgacgtgaa ggccaagcgc ctggccgcgt tccaggccag ggagcaatcg
     2401 ctgcagggcg ccgcccagcg caaggacgaa cagctcaaag ccgccttcgc ccagggccgg
     2461 gcggcgatgg agaatgcgct gggtccgatc ctgcagcagc tggtcaagga acgcggcgcc
     2521 aatctggtgc tggacaagca ggcggtggtg ttcgccaccc agagcggctt cgacgtcacc
     2581 gccgatgcca tcacccggct gaaccagaag ctgcctgcct tcaagatcaa tatgaacgca
     2641 ccgccgcccg cgcccaagca ataggtccaa ggacgaggcc atggccgacc cccgcttttt
     2701 cgaaaatctc gggccgtttt ccctggcgca gatttgcgaa aagagcggga ccccgctgcc
     2761 agccggggcc gatggcgcgc gcgcattctt cgaccttgcc gatctggcgg gggcggggcc
     2821 ccagcatgtg actttctttt ccggcgtggc catcctgcgc gatgtctttg ccggcagcgg
     2881 cgcgggccta tgtctggtgc cctcgcagcc ttcctcggcc aagccgcgcc cgcaagcgcc
     2941 gcccggcatg atcgtggtgg aaacggcatc ggtcggccgc gccttcgccg ccatcgcgcg
     3001 gctgttctat ccggttcatt cccagccgca ctggcagcag aagcaggcgg tgtcgcctga
     3061 ggcccgcatc ggcaaggatg tcgaactggg cgcgtgcgtg gtgatcgggc ctggggcgga
     3121 aatcggcgat ggcacaaggc tgggccccgg cacagtggtc ggtcccggcg tcgccatcgg
     3181 ccgggcctgc gaaatcggcg ccaatgtcac catcagccat gcctatatcg gcgaccgcgt
     3241 caccatcctg ccgggggccc atatcggcca gccgggattc ggtttcacct ccgatggcga
     3301 aggctatctc aaggtcccgc agctgggccg cgtgatcgtg caggacgatg tcgagatcgg
     3361 cgccgccacc accatcgatc gcggcgcctt gggcgacaca gtaatcggcg aaggcagcaa
     3421 gctcgataat ct
//
LOCUS       DATMDK010000479         4945 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_211301,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000479 DATMDK010000000
VERSION     DATMDK010000479.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 4945)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4945)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4945
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_211301"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            93..383
                     /locus_tag="VNN98_09200"
     CDS             93..383
                     /locus_tag="VNN98_09200"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM62319.1"
                     /translation="MKHLLLLLFSLAGGLTLSGIVANLYRLVAKKPQGRAATWVYYGV
                     MLLAGPSVLVGNATRSFRKKECTSAAYGFALGLAAYWSFMLGLGLVELGLVF"
     gene            complement(524..1288)
                     /locus_tag="VNN98_09205"
     CDS             complement(524..1288)
                     /locus_tag="VNN98_09205"
                     /inference="COORDINATES: protein motif:HMM:NF014605.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PhoH family protein"
                     /protein_id="HWM62320.1"
                     /translation="MAKRSMRSKSRDSAYVQENVHPLFPSRSSHQAKAWTPHDPDGQF
                     RDRKYVKNVRAMSPAQQHFMDSIDAQSVVLALGPAGTGKTYLAIAKAVEALESGKVSR
                     IVLSRPAVEAGESLGFLPGDLQEKLAPYLRPLYDALTERLGTKRLKQMLADGIIEIAP
                     VAYMRGRTLSECFVVIDEAQNCTYTQIKMLLTRLGWRSTMVLTGDPDQTDLLPGISGL
                     SDIASRLEKVPEIPVVRLAEGDIVRHPLVASMLTVL"
     gene            1507..2022
                     /locus_tag="VNN98_09210"
     CDS             1507..2022
                     /locus_tag="VNN98_09210"
                     /inference="COORDINATES: protein motif:HMM:NF025953.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="gamma carbonic anhydrase family protein"
                     /protein_id="HWM62321.1"
                     /translation="MPVYALEDAAPQIAEGCWIAPDAVVIGKVRLLAGANIWFGAVLR
                     GDNDWITIGPDSNVQDHSIIHADAGQPVTIGRGVTIGHRVIVHSAEVGDHSLIGMGAI
                     LLNRARIGSRSLVGAGALVTEGKQFDDGKMILGAPAKAMRDLTPEQISGIETSAAHYV
                     ANAKRYAAKLI"
     gene            complement(2050..2682)
                     /locus_tag="VNN98_09215"
     CDS             complement(2050..2682)
                     /locus_tag="VNN98_09215"
                     /inference="COORDINATES: protein motif:HMM:NF025597.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4339 domain-containing protein"
                     /protein_id="HWM62322.1"
                     /translation="MAIRLSLQNLTALVMAESWTISVGGRVYGPYSLEQMQGFHAENR
                     LADHSLVARAGEEQFHPASEDAELALLFQPAPIEEPVLAEPAPAEPAQPHRFGSRAET
                     DGIPAHFVVIADMKSRSITGLEEEIFTLGPAHRFGPQAWVLSSEASINTIRNTLVQKL
                     GKVDTLFIVDAAHDKAAWFNFGPETDSRIRKMWSRPTEHSGAEKRAVRRA"
     gene            complement(2769..3227)
                     /locus_tag="VNN98_09220"
     CDS             complement(2769..3227)
                     /locus_tag="VNN98_09220"
                     /inference="COORDINATES: protein motif:HMM:NF024879.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine zipper domain-containing protein"
                     /protein_id="HWM62323.1"
                     /translation="MTRIATAALVCLGLGATPAFADACSGRDHTGGTIAGGVLGGLLG
                     AVFTHGNGVGIIGGALLGGLAGNAVSRDMDCEDRPYAARSYDESFHGPAGRRYEWSRG
                     QNHGYIVTNREYYRGPRLCRDFTQVVYRRGREFDRDGTACRRRDGEWEFM"
     gene            complement(3376..4026)
                     /locus_tag="VNN98_09225"
     CDS             complement(3376..4026)
                     /locus_tag="VNN98_09225"
                     /inference="COORDINATES: protein motif:HMM:NF024879.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine zipper domain-containing protein"
                     /protein_id="HWM62324.1"
                     /translation="MTIKNIMFAACAATTLVCNAALAQPGWVPPGNDPAGYYSDSDHG
                     GYYDRDGRYRRVRFPDRRDDRDYGPPPPPPPTYYQQGRYEESCRSGNAVNGTIFGALA
                     GGLIGGFASRGNAGATIGGVVVGGLLGNVIGRDVDCDDQPVAYRVYADSLNGDIGRPY
                     EWRNRGNRGTFTSTREFRRGDRVCREFTETTYRGGETNTRTGVSCREIGTGNWRFD"
     gene            complement(4123..4536)
                     /locus_tag="VNN98_09230"
     CDS             complement(4123..4536)
                     /locus_tag="VNN98_09230"
                     /inference="COORDINATES: protein motif:HMM:NF024609.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4019 domain-containing protein"
                     /protein_id="HWM62325.1"
                     /translation="MFLRSFMVALLLFGAATPAFALPAKKSAITAATPAPDDRARQWL
                     VLVDDKNYAQSWSEAAKTFQSHQKTDAWAANATAARAPLGAVASRGLKSIDLSRDNTA
                     VIRYDTVFAHKAAAIETVTMTFENGSWSVTDYSVD"
     gene            complement(4609..>4945)
                     /locus_tag="VNN98_09235"
     CDS             complement(4609..>4945)
                     /locus_tag="VNN98_09235"
                     /inference="COORDINATES: protein motif:HMM:NF021576.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF2306 domain-containing protein"
                     /protein_id="HWM62326.1"
                     /translation="LGTWLIFFSAKGARNHRAAGYVYLTLMTITSIAALFVHTIMPNG
                     PFLGFSPIHLFVPLTLFGVVGALYYARRHNIKAHRKSMLGVYIGGLLIAGSLTLLPGR
                     IMHTVFFGH"
BASE COUNT          911 a         1481 c         1619 g          934 t
ORIGIN      
        1 ggccgatctc caccaggcca tgccccaggc caaggtgaag gctgctgtcc ttacgctgtt
       61 tcacggcggg aagggttgag cggtcagggg ctatgaaaca tttgctattg ttgttgttct
      121 cgcttgcggg cgggctgacc ttgtccggca tcgtggccaa tctctaccgt ctggtggcca
      181 agaagccgca aggacgcgcc gcgacctggg tctattacgg ggtgatgctg ctggcagggc
      241 ccagcgtgct ggtcggcaac gccacgcgtt cgttccgcaa gaaggaatgc accagcgccg
      301 cctacggctt cgcacttggt ctggcggcct attggtcgtt catgctgggg ctcggcctcg
      361 tagaactcgg cctcgttttt taattacccc ctccggcctt cgcaccggtc gaccgacaaa
      421 aggtccgctg gaccttttgt tttcggtctc cacggtgcta cggccacctc cccctcttgt
      481 gcgttacgcg cacgaagggg aggcgggccg gagtttgtct cgtctaaagt accgtcagca
      541 tcgaggcgac caggggatgg cgcacgatat cgccttccgc cagccgcacc accgggatct
      601 ccggcacttt ttccagccgg gatgcgatat cggacagccc ggaaattccc ggcagcaggt
      661 cggtctggtc gggatcgccg gtcagcacca tggtcgagcg ccagcccagc cgggtgagca
      721 gcatcttgat ctgggtgtag gtgcagttct gcgcctcatc gatcaccaca aaacattcac
      781 tgagagtgcg gccgcgcatg taagccaccg gtgcgatctc gatgatgccg tcggccagca
      841 tttgcttcag ccgcttggtg cccagccttt cggtcagcgc gtcataaagc gggcgcagat
      901 agggcgccag cttctcctga agatcgccgg gcaggaagcc caggctctca cccgcttcca
      961 ccgccggacg cgacagcacg atgcggctga ccttgccgga ttccagcgcc tcgacggcct
     1021 tggcaatggc gagataggtt ttgccggtgc cggcaggccc cagcgcgagc acgacgcttt
     1081 gcgcgtcgat cgagtccata aagtgctgct gggccgggct catcgcccgg acattcttta
     1141 cgtatttgcg gtctcggaat tggccatcgg ggtcgtgcgg cgtccaggct ttggcttggt
     1201 ggctggagcg gcttgggaaa agcggatgca cattctcttg aacataggca gagtcacgcg
     1261 acttcgaacg catggagcgt ttggccataa atactcccga tgtgtgagac tgatgtggaa
     1321 ggtgtgaacg aaggggaggg gctgtccggt gtcccggccc tggattctat tggcgaacgc
     1381 agtgcgaaat gcaccagtgc cttttccccc gtgaataggc gaatcaaacc gcctgtattc
     1441 agggtatcgt tttttgtgga taggtgtgtg aaattctcac aacggaaata atgcggacaa
     1501 aagacgatgc ctgtttacgc cctggaggac gccgcgccgc aaatcgccga aggttgctgg
     1561 atcgcgcccg atgcggtggt gatcggaaaa gttcgcctgc ttgcgggcgc gaacatctgg
     1621 ttcggcgcgg tgctgcgcgg cgataacgac tggatcacaa tcgggccaga ctcgaatgtc
     1681 caggatcata gcatcattca cgccgatgcg ggacagcccg tgaccatcgg gcgcggcgtc
     1741 accatcggcc atcgcgtcat cgtccacagc gccgaggtgg gcgaccattc cctgatcggc
     1801 atgggcgcca tcctgctcaa ccgcgcccgc atcggcagcc gcagtctggt gggcgcgggc
     1861 gcgctggtga cggaaggcaa gcagttcgac gatggcaaga tgatcctggg cgcgccggca
     1921 aaagcgatgc gcgatctcac gccggaacaa atttcaggga tcgagacctc ggcggcacat
     1981 tatgtcgcca atgccaaacg ctacgcagcc aaacttattt aatggtcgct ccggctctcg
     2041 ccgacgctcc taagcccgtc tgacggcgcg cttttcggcg ccgctatgtt ccgtcgggcg
     2101 gctccacatc ttgcggatgc gggagtcggt ctcaggcccg aaattgaacc aggcggcctt
     2161 gtcatgagcg gcgtcgacga tgaacaaggt gtcgaccttg cccagcttct gcaccagggt
     2221 gttgcggatg gtgttgatcg aagcttcgct ggacagcacc caggcctgcg gtccgaaacg
     2281 gtgcgccgga cccagggtga aaatctcttc ttccaggccg gtgatggaac gcgacttcat
     2341 gtcggcaatg acgacgaaat gggctggtat gccatccgtc tcggcgcggc tgccgaagcg
     2401 gtgcggctgg gccggctcgg ccggggctgg ctcggccagc acgggttctt cgatcggggc
     2461 gggctggaac agcagcgcca gttcggcgtc ttcgctggcg ggatgaaatt gctcttcacc
     2521 tgcgcgcgcg accagggagt gatccgccag ccggttctcg gcatggaagc cctgcatctg
     2581 ttccaggctg taggggccgt agacgcggcc gccaacgctg attgtccagg attcggccat
     2641 gaccaacgcg gtgagatttt gcaggctcag cctaatcgcc aatggttacc caatggttgc
     2701 gggcaaggct ggcctcaaac gaaaaccccg ccattgggcg gggttttgct tgaaaagaag
     2761 gttggacgtt acatgaattc ccactcgcca tcccggcggc ggcaggccgt gccgtcacga
     2821 tcgaactcgc ggccccggcg atagaccacc tgggtgaagt cgcggcacag gcgcggcccg
     2881 cgataatatt cccggttggt gacgatatag ccgtggttct ggccccggct ccattcatag
     2941 cggcgcccgg cagggccatg aaagctttcg tcataggagc gcgccgcata aggccggtct
     3001 tcgcaatcca tgtcgcggga aaccgcgttg ccggccaagc cgcccagcag ggcgccgccg
     3061 atgatgccca cgccattgcc gtgggtgaaa accgcgccca gcaggccgcc caacacgcca
     3121 ccggcgatgg tgccgccggt atggtcacgg ccgctgcagg catcggcgaa ggcgggagtc
     3181 gcgcccaggc ccaggcaaac tagggctgcg gtggcgatgc gggtcatcaa aatctcccgt
     3241 gacaacgtga ctggcgaatg gcctggatgc aaaaacgaat gttgcaacaa atagttcccg
     3301 gccgccccta tggccgggtg gataaaggtt cacggctccg gcgcgcgggc gccggagccg
     3361 tgtttcaaat cttgctcagt caaaccgcca gttgcctgtg ccgatttcgc ggcaggacac
     3421 gccggtgcgg gtattggttt cgccgccgcg ataggtggtt tcggtgaatt cgcggcacac
     3481 ccggtcgccg cggcggaatt cgcgggtgga ggtgaaggtg ccgcgattgc cgcgattgcg
     3541 ccattcatag ggacggccga tatcgccgtt caggctgtcg gcatagacgc gataggccac
     3601 gggttggtcg tcgcagtcga catcgcggcc gatgacgttg ccgagcaggc cgcccaccac
     3661 cacaccgccg atcgtggcgc cggcattgcc gcggctggcg aagccgccga tcagcccgcc
     3721 tgccagggca ccgaagatgg tgccgttgac ggcattgccg ctgcggcaac tctcttcata
     3781 gcggccctgc tggtaatagg tgggtggggg cggaggcggc gggccgtaat cgcggtcatc
     3841 gcgccggtcg gggaaacgaa cgcggcgata gcggccgtcg cggtcgtaat agccgccatg
     3901 gtcgctgtcg ctgtaatagc cggcgggatc gttgccgggc ggcacccaac cgggctgggc
     3961 caatgcggcg ttgcaaacca atgtcgtggc cgcacaggcg gcgaacataa tattcttgat
     4021 ggtcatatat ttctcccttg tgttcggcgc tccagccggg gtcgaagact cgctttcttt
     4081 ggctgaacct tatctgaacg gattacggca tcttcggggc ggtcaatcga cggaatagtc
     4141 ggtgaccgac cagctgccat tctcgaaagt catggtgacg gtttctatcg cagccgcctt
     4201 gtgggcgaac accgtgtcgt agcggatgac ggcggtgttg tcccggctga ggtcgatgga
     4261 cttgagcccc cggctggcca ccgcgcccag cggcgcgcgt gcggcagtcg cgttcgcggc
     4321 ccaggcatcg gtcttctggt ggctctggaa ggtctttgcc gcctcgctcc agctctgggc
     4381 gtaattcttg tcgtccacca gcaccagcca ctggcgcgcc cggtcatcgg gggcaggggt
     4441 ggcggcggtg atggcggatt tcttcgcagg caaggcaaag gccggtgttg cagcgccgaa
     4501 caacagcagg gcaaccataa aggagcgcaa gaacatggcg gcctcaaatg ttataattca
     4561 ccgcccaaaa aacgcagcaa aacgaaaacg cggcaagccc ggttgggttc aatggccgaa
     4621 aaacaccgta tgcatgattc gccccggcag cagggtcagg ctgccggcga tcagcaggcc
     4681 gccgatatag acgcccagca tggatttgcg atgcgccttg atattatggc gccgcgcata
     4741 atagagcgcc cccaccaccc cgaacagcgt cagcggcacg aacagatgga tggggctgaa
     4801 gcccaggaac ggcccgttcg gcatgatggt atgcacgaac aaagcggcga tggaggtgat
     4861 ggtcatcaag gtcagataga catagccggc ggcgcggtga ttgcgcgcgc ccttagcgct
     4921 gaagaaaatc agccaggtgc cgagc
//
LOCUS       DATMDK010000480         4789 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_3199489,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000480 DATMDK010000000
VERSION     DATMDK010000480.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 4789)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4789)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4789
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3199489"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..461
                     /locus_tag="VNN98_09240"
     CDS             <1..461
                     /locus_tag="VNN98_09240"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM62327.1"
                     /translation="GATVLVRVSFPVTGGAAPKTVEISRMGADAKTWTAHTVWDAPAD
                     AAVPGHSFYALLDGSDLAQNERVTAGIPTGAAAPGATVPAHALVFGESEAWVYIQTAP
                     HTFLRTKVDTNRPMGDGYFVDNIKAGDKVVVGGAGLLLAHEVNPSTEAGD"
     gene            466..3552
                     /locus_tag="VNN98_09245"
     CDS             466..3552
                     /locus_tag="VNN98_09245"
                     /inference="COORDINATES: protein motif:HMM:NF013069.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HWM62328.1"
                     /translation="MRWLVSLCVRYAGTIATLTLLALLAGLWATRSAPLDVFPDFVPS
                     TVDIQTEAPGFTAQQVEQLVTKPIENAVNGTPGLATMRSESIPGLSLITIQFSDNIDL
                     YNARQGISERLSELGSALPAGVGTPKLSPLTSSTMDLLKIGLLSDKLTPFQLRDQAEW
                     VMKPALLAVPGVAHVILFGGAVREIQIQPDVVRMASYGFTLTDLADAARAALALRGAG
                     FVDMAHQRVLIQTPVPAPDPAAISGAVLAVRGKTPITIGDIAKVTEAPALRSGDALVM
                     GRPGVMLSLASQYGANTLETTRALEVALAGLAPALKAQGITLYPALHRPANFIERALS
                     SLEQSLVIAAILILAILYLFLRDWRSAFITFLAIPLSLLAAVAVLDRMGQTLNTMTLG
                     GFAVALGVLVDDAIIGIENTLRRLGENAKLAQPRSRFDVIRDATLEVRGPVVYATLVV
                     IIVFLPALFSTSVQGKFVGPLALAFILAVLASLGVALTAAPALSALMLKARDHHADSG
                     WIQKMKAWQQRGVGFVYENFRIVMAVLVVLTVAAGALLPFLGGSFMPDFREGHFVMQV
                     SSSTPGASLEEMMAVGERISKDVLALPYVATIEQQIGRASLGEDTWGPHQSEFHVELK
                     ADATIDQNEAEDALRQILARYPGLQSEVVTFLGDRISESLTGETADVAVKIFGDQLDM
                     LDATGQRISQALRGTPGIADLQFKPQSGTPTFALQIQQAALVANGLKMQDVLDAVQAE
                     YTGAKVGQTYAGTRIVDVELLLPEAARNRPELLSSLMIASPFGPVPLSQVARVAPTET
                     RFKIAHDGGQRYVSLTFNVVGRGLQATSQDAQAKVAALKLPPGVYVQFTGAAEAQRAS
                     QNQLLLYTGFAIVLIGMILFICFQWRSNTWLVLVNLPFSLIGAVIAIALMSGGLSVGA
                     MVGLVTVFGVSARNAILLLAHYEHLVEVEGAPWNVETILRGAQERLVPILMTAAVTAL
                     GLMPLAIGLHQPGQEIEGPMAVTVLGGLISSTFLNLVVLPALAERFGGPKRAEAAP"
     gene            3549..>4789
                     /locus_tag="VNN98_09250"
     CDS             3549..>4789
                     /locus_tag="VNN98_09250"
                     /inference="COORDINATES: protein motif:HMM:TIGR01845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux transporter outer membrane subunit"
                     /protein_id="HWM62329.1"
                     /translation="MIRKLLLSSVLAITAAGCASTPPPSLQPGDVPAAFEQKAPVNAP
                     VWPARDWWTNYGDPQLSALMDQAQANNLDIIQAAARLRQADARARQAGAALLPSLGAA
                     GSVNSLYGQTNGTSAHETDYSAGLEASYELDFWGKNRDALDSANAAIRASRADRATVA
                     LTATAGVANTYFQLLSLRERTLVAQANLKSAEDILAVVQRRVSAGYAPNADLLAQRAA
                     LAAQQAAVPVLEQQELEARNALAILLGKPPEGFSVTGDSLGVLAPPAVAPGLPSELLT
                     RRPDIIAAEANLAGAHADLAAARAAFFPTINLTASGGIAYPALAAAIDTLPGLGLAAG
                     IGASLAQTIFDGGKTQGRVDETRAREEELLAAYRAAVIASFSDVENALGNFAHLGAQE
                     AALRDQVVQSEKVLRAAQRKY"
BASE COUNT          797 a         1587 c         1563 g          842 t
ORIGIN      
        1 ccggcgccac ggtgctggtg cgggtgagtt ttcccgtcac cggcggcgca gcaccgaaaa
       61 cggttgagat cagccgcatg ggcgccgacg ccaagacctg gacggcgcat accgtatggg
      121 acgcgcctgc cgatgccgcc gtgccgggcc acagctttta cgccctgctg gacggcagcg
      181 acctagccca gaacgaacgg gtgacggccg gtattcccac cggcgcggcc gcgccgggcg
      241 ccacggttcc cgctcatgcg ctggtattcg gcgaaagcga ggcctgggtc tatatccaga
      301 ccgcgccgca caccttcctg cgcaccaaag tggacaccaa ccggccgatg ggcgacggct
      361 atttcgttga caatatcaag gcgggcgaca aagtcgtggt cggtggcgcc ggattgctgt
      421 tggcccatga agtaaatccc agcaccgaag ccggggactg aggccatgcg ctggcttgtc
      481 agtctttgtg tgcgctatgc cggtaccatt gcgaccctaa ccttgcttgc gctgctggcg
      541 ggcctgtggg cgacacgcag cgcgcccttg gatgtgttcc cggacttcgt gccctccacg
      601 gtggacatcc agaccgaggc gcccggcttt accgcccaac aggtggaaca gctggtcacc
      661 aagccgatcg aaaacgcggt gaacgggaca ccgggcctgg ccaccatgcg ctcggaatcc
      721 attcccggcc tgtcgctgat caccatccag ttcagcgaca atatcgatct ctacaatgcc
      781 cggcagggga tatcggaacg cttgagcgag ttgggcagcg ccttgcccgc cggcgtcggg
      841 acaccgaaat tgtcgccgct cacctccagc accatggacc tgctcaagat cgggctgctg
      901 tcggacaagc tgacgccttt ccagctgcgc gaccaggcgg aatgggtaat gaagcccgct
      961 ctgctggcgg tgcctggtgt cgcccatgtg atcctgttcg gtggcgcagt gcgggaaata
     1021 cagatccagc ccgatgtcgt ccgtatggcc tcctatggct tcaccctaac cgatctggcg
     1081 gacgcggcgc gggctgcgct ggcgctgcgc ggcgcgggct tcgtggatat ggcccatcaa
     1141 cgtgtgctga tccagacacc ggtgccggcg cccgatccgg cagcgatcag cggcgcggtg
     1201 ctggcggtgc gcggcaagac gcccatcacc atcggcgata tcgccaaggt gaccgaagcc
     1261 ccggcgctgc gctcaggcga cgcgctggtg atggggcgtc ccggcgtgat gctgtcgttg
     1321 gccagccagt atggcgccaa caccttggag accacccgcg ccctggaagt ggcgctggcc
     1381 gggctggccc cagccctgaa agcgcaaggc atcaccctct atcccgcgct gcaccggcca
     1441 gccaatttca tcgaacgggc gctgagttcc ctggaacagt cgctggtgat cgccgccatc
     1501 ctgatcctgg cgatacttta tttattcctg cgcgactggc gctcggcctt catcactttc
     1561 ctggccattc ctttgtcgct gctggcggcg gtggctgtgc tggaccggat gggccaaacc
     1621 ttgaacacca tgaccttggg cggcttcgcg gtggcgctgg gcgtgctggt ggacgatgcc
     1681 attatcggca tcgaaaatac cctgcgccgg ctgggcgaga atgccaaact ggcccagccc
     1741 cgttcgcggt tcgacgtcat ccgtgacgcc actttggaag tgcgcggacc ggtggtctat
     1801 gccaccctgg tcgtcatcat cgtattcctg ccggcgctgt tctccaccag cgtgcagggc
     1861 aaattcgtcg ggccgctggc cctggccttc atcctggcgg tgctggcctc gctgggcgtg
     1921 gcgctgaccg ccgcgccggc actgtcggcg ctgatgctca aggcccgcga ccatcatgcc
     1981 gattccggct ggattcaaaa aatgaaggcc tggcagcagc ggggcgtcgg ttttgtctat
     2041 gagaatttcc gcatcgtcat ggcggttctg gtcgtgctga cagtcgcggc cggtgccctg
     2101 ctgccgttcc tgggcggcag cttcatgccc gatttccgcg aaggccattt tgtgatgcag
     2161 gtgtccagtt ccacccccgg cgcctcattg gaagaaatga tggcggtggg cgaacgcatc
     2221 agcaaagacg tgctggcgct gccgtatgtc gccaccatcg agcagcagat cggccgcgcc
     2281 tccctgggcg aggatacttg gggaccgcat cagagcgaat tccatgtcga gctgaaagcc
     2341 gacgccacca tcgaccagaa cgaggccgag gatgcgctgc ggcagatact ggcgcgttac
     2401 cccggcctgc agagcgaagt cgtcaccttc ctgggcgacc ggatcagcga aagcctgacc
     2461 ggcgagaccg ccgacgtcgc ggtgaagata ttcggcgacc agctcgacat gctggacgcc
     2521 accgggcagc gtatttccca ggctttgcgc ggcaccccgg gcatcgccga cctccagttc
     2581 aagccgcaaa gcggcacgcc cactttcgcg ctgcagatcc agcaggcagc cttggtggcc
     2641 aacggactca agatgcagga tgtgttggac gcggtgcagg cggaatatac cggcgccaag
     2701 gtgggccaga cctatgccgg cacccgtatc gtcgatgtcg agctgttgct gccggaagcc
     2761 gcgcgcaacc ggcccgagct tctgtcttcg ctgatgatcg ccagcccttt cggtcccgtg
     2821 ccgctgtcgc aggtggcgcg agtcgcgccc accgaaacgc gcttcaagat cgcccatgat
     2881 ggcgggcagc gctatgtctc gctcaccttc aatgtggtgg gccgcgggct gcaagccacg
     2941 tcgcaggatg cccaggccaa ggtcgcagcc ctgaagctgc cgcccggcgt ctatgtccag
     3001 ttcaccggcg ccgccgaagc gcagcgcgcc tcgcagaacc aactgctgct ctataccggc
     3061 ttcgccatcg tgctgatcgg catgatcctg ttcatctgct ttcagtggcg ctccaacacc
     3121 tggctggtgc tggtcaatct gcccttcagc ctgatcggcg cggtgatcgc cattgccttg
     3181 atgagtggcg gattgtcggt gggcgccatg gtgggcctgg tcaccgtctt cggcgtcagc
     3241 gcccgcaacg ccatcctgct gctggcgcat tacgagcatc tagtggaagt cgaaggcgcg
     3301 ccctggaatg tggaaaccat cctgcgcggg gctcaagaaa gactggtgcc catcctgatg
     3361 accgcggcgg tgaccgcgct gggcttgatg ccgctggcca tcgggttgca ccagcccggg
     3421 caggagatcg aaggaccaat ggcggtgacg gtgctgggcg ggttgatcag ctcgactttc
     3481 ctcaatctgg tggtgctccc ggccttggcc gaacgcttcg gtggaccgaa gcgggcagag
     3541 gccgcgccat gatccgcaag ctgctgctgt ccagcgtcct cgcgatcacc gccgccggct
     3601 gcgccagcac cccgccgccc agcttgcagc cgggcgacgt gccggccgcc tttgagcaga
     3661 aggccccggt caacgcgccg gtctggccgg cgcgtgattg gtggaccaac tacggcgatc
     3721 cgcagctcag cgccctgatg gaccaggccc aggccaataa tctcgacatc attcaggcgg
     3781 cggcccggct gcgccaagcc gatgcgcggg cccgccaggc gggcgcggcc ttgctgccga
     3841 gcttgggcgc cgccggcagc gtcaacagtc tgtacggcca gaccaatggc acctcggccc
     3901 acgaaaccga ttacagcgcg ggactggaag ccagttatga actggatttc tggggcaaga
     3961 accgcgatgc gctggattcg gccaacgccg ctatccgcgc cagccgcgct gaccgcgcca
     4021 ccgtggcgct gaccgccact gcgggcgtcg ccaacaccta ttttcagctt ctgtcgctgc
     4081 gcgagcgtac cctagtggcg caggccaatc tcaaatccgc cgaagacata ttggccgtgg
     4141 tgcagcggcg ggtaagcgcc ggttatgcac caaatgccga cctgctggcc cagcgcgccg
     4201 cgttggcggc gcagcaggcg gcggtgcccg tgctggagca gcaggaactg gaagcgcgca
     4261 atgcgctggc gatcctgctg ggtaagccgc ccgaaggctt cagcgtcacg ggcgacagcc
     4321 tgggcgtgct ggccccgcct gccgtcgcgc caggactgcc atccgaactg ctgacacggc
     4381 ggcccgacat catcgcggcg gaagccaatc tggcgggggc gcatgccgac ttggcggcag
     4441 cgcgcgccgc cttcttcccc accatcaacc tcaccgccag cggcggcatc gcctatccgg
     4501 cgctggctgc ggcgattgac accttgcccg gtctgggctt ggctgccggc atcggcgcca
     4561 gcttggcgca gacgatcttc gacggcggca agacccaggg cagggtggac gaaaccaggg
     4621 cgcgggaaga ggaactgctg gccgcttacc gtgccgcggt gatcgcctct ttctccgatg
     4681 tcgaaaatgc cctgggcaac tttgcccatt tgggggcgca ggaagcggcg ctgcgcgatc
     4741 aggtagtgca atcggaaaaa gtgctgcgcg cggcccagcg caaatacat
//
LOCUS       DATMDK010000481         2020 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_443847,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000481 DATMDK010000000
VERSION     DATMDK010000481.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2020)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2020)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2020
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_443847"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..861
                     /locus_tag="VNN98_09255"
     CDS             <1..861
                     /locus_tag="VNN98_09255"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HWM62330.1"
                     /translation="TAGSALSLPLVTALILAVGWRGAFIVTGLLGIAWALAWWFIYRD
                     PERHRAIAPEQVDALLAQRGAPAPITEGAAVTAKISWLDLFRYRSIWGLMIGLFCLNF
                     AIYFFITWFPSYLLQARGFSLTSLGTLGMVPALMAIVGNWLGGYASDRLLKFGWSPTK
                     ARKTCLVGGMLMASSIGLSAFVDSIAACLALFSLAYSSLSFAGANVWTVGSEIAPTPG
                     HVASIGGLQNFAGNLAGILITTFTGVMLVLTKGSFLIPLAVAGGLCVVGALSYLFIVG
                     KVEPLPVLIR"
     gene            complement(810..1637)
                     /locus_tag="VNN98_09260"
     CDS             complement(810..1637)
                     /locus_tag="VNN98_09260"
                     /inference="COORDINATES: protein motif:HMM:NF013429.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIM barrel protein"
                     /protein_id="HWM62331.1"
                     /translation="MLNFAANLSWMFKEWAFLDRFAAAADADFSHVECLFPYDHTPDD
                     IARQLARNKLKLVLFNAPPGDLSEGERGLASLPDRQDEFRASVETALDYARATGVGRV
                     HLMSGLAAGDPALALATFREAIRFACDAAAGDGIDVMIEPINNRDVPGYLMNDFALAE
                     QLIAELKLPNLKLQFDIYHRQVIHGEVMRGLEMLMPITGHIQISSVSSRHEPMSGALD
                     DFAILRAIDRLGYAGYIGCEYNPAAGTLAGLEWMKRLAGTGQRINTGSGSTFPTMNR"
     gene            complement(1646..>2020)
                     /locus_tag="VNN98_09265"
     CDS             complement(1646..>2020)
                     /locus_tag="VNN98_09265"
                     /inference="COORDINATES: protein motif:HMM:NF036996.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM62332.1"
                     /translation="IWGSGAPVIPVLDVGPALEPALLEKLEGCDALVLALPGGGHVAD
                     SAPAVLEKLAAKMPVVFASRTGAGETLTRSYGYAGGEMDLIRRGLIPAGWLDGRKARV
                     ALAILLSGGASRADIAAFFAGL"
BASE COUNT          343 a          648 c          629 g          400 t
ORIGIN      
        1 acggcgggat cggcgctatc gctgccgttg gtgactgcgc tgatcctggc agtgggctgg
       61 cgcggcgctt tcatcgtcac cggcctcttg ggaatcgcct gggcgctggc ctggtggttc
      121 atctatcgcg atcccgagcg ccatcgcgcc atcgcgccgg aacaagtgga tgccttgctg
      181 gcgcagcgcg gtgcgccggc ccctataact gagggggccg ctgtcacggc caagatttcc
      241 tggctggacc tgtttcgcta tcgctcgatc tggggattga tgatcggatt gttctgcctg
      301 aatttcgcga tctacttctt catcacctgg tttccctcct atctgctgca ggcgcggggc
      361 ttctcgctga cctcgctggg caccttgggc atggtgccgg ccctgatggc gattgtcggc
      421 aactggcttg gcggctatgc ctcggatcgc ttgctcaaat ttggctggag tcccaccaag
      481 gcgcgcaaga cctgcctggt gggcggcatg ttgatggctt cgtccatcgg gctgtctgct
      541 ttcgtggaca gcatcgccgc ctgcctcgct ttgttcagcc tcgcttactc cagcctgtcc
      601 tttgccgggg ccaatgtctg gacggtgggc agcgagatcg cgcccacgcc cggtcatgtc
      661 gcctccatcg gcggcctcca gaatttcgcg ggcaatctgg ccgggatctt gatcaccacc
      721 ttcaccggcg tgatgctggt gttgaccaaa ggctcgttcc tgataccgct ggcagtggcg
      781 ggaggcctct gtgtggtggg cgcgctgtct tatctgttca ttgtcgggaa ggtggagcca
      841 ctgccggtgt tgatccgctg acccgttccc gccagacgct tcatccattc taggcccgcc
      901 aaagtgccgg cggcgggatt gtattcgcag ccgatgtatc cggcataacc cagccggtcg
      961 atggcccgca ggatggcaaa gtcgtccagc gcgccgctca tgggttcatg gcgcgatgac
     1021 acggacgaaa tctggatgtg gccggtgatc ggcatcagca tttccagccc gcgcatcacc
     1081 tcgccgtgaa tgacctggcg atgatagatg tcgaattgca acttcaagtt aggcagcttc
     1141 agttcggcaa tgagctgctc ggccaaggcg aaatcgttca tcagatagcc gggcacatcg
     1201 cggttgttga tgggttcgat cataacatca atcccgtccc cggcggcagc gtcgcaggca
     1261 aatctgatcg cctcccgaaa ggtcgccagc gcgagcgccg gatcgccggc ggccagaccc
     1321 gacatcagat gcacccgccc cacgccggtt gcccgcgcat agtccagcgc ggtttctacc
     1381 gaggcgcgaa actcgtcttg acggtcaggc agcgaggcca agccccgctc accttcggac
     1441 agatcgcccg gaggcgcgtt gaacagaacc agcttgagct tgttgcgggc aagctgccgg
     1501 gcgatgtcgt ccggcgtgtg gtcgtagggg aaaaggcatt ctacatgcga aaagtccgca
     1561 tccgccgcgg cggcaaagcg gtccaggaaa gcccattcct tgaacatcca ggaaagattg
     1621 gcagcgaagt tcagcacagc gtccttcaca atcctgcgaa gaaggcggcg atgtcagccc
     1681 gcgatgcgcc gcccgatagc agaatggcca gcgccactcg cgccttgcgc ccgtccagcc
     1741 agccggcggg gatcaggccg cgccggatca aatccatttc gccgccggca tagccatagg
     1801 aacgggtcag ggtttcgccc gcgccggtgc ggctggcaaa caccaccggc attttggccg
     1861 ccagcttctc cagcaccgcc ggcgcgctgt cggcgacatg gccaccgccg ggcaaggcca
     1921 gcaccagcgc gtcgcagcct tccagttttt ccaatagggc gggctccaaa gccgggccga
     1981 catccagcac cggaatcacg ggcgcaccag atccccaaat
//
LOCUS       DATMDK010000482         4233 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_447787,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000482 DATMDK010000000
VERSION     DATMDK010000482.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 4233)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4233)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4233
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_447787"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..185
                     /locus_tag="VNN98_09270"
     CDS             <1..185
                     /locus_tag="VNN98_09270"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM62333.1"
                     /translation="GNDAKTSAQMANQKADMTTDDVSKLKRKVAYLEWKVLPHHKKRH
                     HHRAPTTTDQPKPNNS"
     gene            complement(386..1444)
                     /locus_tag="VNN98_09275"
     CDS             complement(386..1444)
                     /locus_tag="VNN98_09275"
                     /EC_number="1.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012335.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent alcohol dehydrogenase"
                     /protein_id="HWM62334.1"
                     /translation="MQTKAYAAQSATTPFGPHTIERREPEPKDVSLEILFCGVCHSDL
                     HTARGEWPGTQYPCVPGHEIIGKVTSVGADVSRFKPGQIVGVGCMVDSCRTCAQCHEG
                     LEQYCDGPVGFTGTYNGPVGGGPNTHGGYSAAITVDEHFVLNISHAEKDLAAVAPLLC
                     AGITTWSPLKHWGAGPGKKVGIVGIGGLGHMGVKLSHALGAHTVAFTTSAGKVADAKA
                     LGADEVVVSKDPSQMKEHYNSFDMILDTVAAPHNLDAFTALLKRDGTMALVGAPSTPH
                     PSPAVFNLVFKRRAIAGSLIGGIPETQEMLDFCAKHGITSDVEMIKMQDIEAAYARML
                     KSDVKYRFVIDMASLKST"
     gene            1615..2145
                     /gene="ppa"
                     /locus_tag="VNN98_09280"
     CDS             1615..2145
                     /gene="ppa"
                     /locus_tag="VNN98_09280"
                     /EC_number="3.6.1.1"
                     /inference="COORDINATES: protein motif:HMM:NF002317.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004427 - inorganic diphosphate
                     phosphatase activity [Evidence IEA];
                     GO_process: GO:0006796 - phosphate-containing compound
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic diphosphatase"
                     /protein_id="HWM62335.1"
                     /translation="MRVDQIPVGKNAPDDVNVIIEVPIGGEPIKYELDKASGALVVDR
                     FLYTAMRYPGNYGFIPHTLSGDGDPVDVLIANTRAIAPGAVMSVRPVGVLLMEDNAGM
                     DEKIVAVPSSHISQRFDGISNYSDLPEITVKQIEHFFAHYKDLEPGKWVKIIRWGDAT
                     EAKKMITDGVARAKNA"
     gene            complement(2142..2873)
                     /locus_tag="VNN98_09285"
     CDS             complement(2142..2873)
                     /locus_tag="VNN98_09285"
                     /inference="COORDINATES: protein motif:HMM:NF012452.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase"
                     /protein_id="HWM62336.1"
                     /translation="MTYCLGIVLPAGLVLASDSRSNAGVDQVTRVRKFELFTQPGNRV
                     IAILSAGNLATTQSVTSQLREMLGSGTGDDLYAARSMFEVARIVGDKLRAVIARDGPS
                     VTPYGDPTGSFLVGGQIAGETPRLFQVYSAGNFIEASLRSSFLQIGETKYGKPILDRA
                     LTPDCPLNEAAKLALLSFDATLRSNLSCGPPIDIMRYETDSFSTANMIMLKEDDSYWN
                     TLRNGYGDGLSGLVKMLPPPPDWGA"
     gene            3005..3937
                     /locus_tag="VNN98_09290"
     CDS             3005..3937
                     /locus_tag="VNN98_09290"
                     /EC_number="3.5.1.2"
                     /inference="COORDINATES: protein motif:HMM:NF002133.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004359 - glutaminase activity [Evidence
                     IEA];
                     GO_process: GO:0006541 - glutamine metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutaminase"
                     /protein_id="HWM62337.1"
                     /translation="MDRMDYLDDIVATVHRDMEAHLGRGKVADYIPALARMDPKNFAI
                     AVTTCDGRTAQAGGAHLPFSIQSISKVFTLTLALNKLGANLWDRVGREPSGSRFNSIV
                     QLEAEKGIPRNPLINAGALTITDTLLDGGDPDATIAEILGFMRGLADDPAVVIDDEVA
                     ESEAQTGFRNTSLANFLRANDNLTGPVADVLKVYFHQCALRMNCRQLARAGLFLAHAG
                     QDPINHARVTTPFRTKRINAIMMTCGHYDASGDFACRVGLPGKSGVGGGILAIAPRQA
                     AICVWSPGLNAQGNSLVGAMALERLSSLTGWSVF"
     gene            complement(3995..>4233)
                     /locus_tag="VNN98_09295"
     CDS             complement(3995..>4233)
                     /locus_tag="VNN98_09295"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM62338.1"
                     /translation="FWLFVVAFNLVGLADLILDYYKAVQGGLPALAGQLGATYAIPII
                     YVPVLMITHVAAFYLLARPLPKAVQVLAGDAATS"
BASE COUNT          819 a         1289 c         1341 g          784 t
ORIGIN      
        1 tgggcaacga tgccaagacc tcggcgcaaa tggccaacca gaaggccgat atgaccaccg
       61 acgatgtttc aaagttgaag cgcaaggtcg cctatctgga atggaaagtg ctgccgcacc
      121 acaagaagcg ccatcaccac cgcgcgccca cgaccacgga ccagcccaag ccgaataaca
      181 gctagttcaa gaaaaaaccc cgcgatgcag atcgcggggt ttttccttac tccatggccg
      241 gcctccggcg cattgcgaca gcctatgcgc gccatccaga gccgtagaca cggtatttgt
      301 tgccctggat gggcgggtcg tgaagcttgt cctccggccg cgcttcgcgc ggaccggggg
      361 gcccgcccat ggtgagagat tgaggttagg tgcttttcaa actcgccatg tcgatcacaa
      421 aacgatactt cacgtcgctt ttgagcatgc gcgcataggc tgcctcgatg tcctgcatct
      481 tgatcatctc gacgtccgag gtgatgccgt gcttggcgca gaaatccagc atctcctggg
      541 tctcgggaat accgccgatc agcgagccgg cgatggcgcg gcgcttgaac accaggttga
      601 acaccgcggg cgaggggtgc ggggtggacg gcgcccccac cagcgccatg gtgccgtcgc
      661 gcttgagcaa ggcggtgaag gcatccagat tgtgcggcgc cgccacggtg tcgaggatca
      721 tgtcgaagct gttgtaatgc tccttcatct gggacggatc tttggacacc accacttcat
      781 cggcgcccag cgccttggcg tcggccactt tgccggccga ggtggtgaag gcgacggtgt
      841 gggcgcccaa agcgtggctg agtttcacgc ccatatggcc cagaccgccg attccgacga
      901 tgccgacctt cttgccgggg cccgcgcccc aatgcttgag cggtgaccat gttgtgatac
      961 cggcgcagag cagcggcgcg acggcggcca ggtccttttc cgcatggctg atgttcagca
     1021 cgaaatgctc gtccaccgtg atggcggcgc tgtagccgcc atgggtgttg gggccgccgc
     1081 ccaccgggcc gttataggtg ccggtgaagc cgaccggccc gtcgcaatac tgctccaggc
     1141 cttcgtggca ttgggcacag gtgcggcagc tgtccaccat gcagcccacg cccacgatct
     1201 ggccgggctt gaaacgggag acgtccgcac cgaccgaggt caccttgccg atgatctcat
     1261 ggcccggcac gcaagggtat tgcgtgcccg gccattcacc gcgcgcggtg tgcaagtcgc
     1321 tgtggcagac gccgcagaac aggatttcta gggaaacgtc cttgggttcc ggttcgcggc
     1381 gttcgatagt gtggggtccg aagggcgtgg tggcggactg ggcggcatag gctttggtct
     1441 gcatgcaaac tcctgcaaag gcgggggaat atcctggtgt agataacgcg gaaaccagca
     1501 ttgtgaaggc cgcccgcggc ctttcgtccg gattttagcc gcgcgggttg acgcaaccgg
     1561 gcaataaaat taccaaccgc gcaaccccgc accattttta gtcaggaatg ccccatgcgc
     1621 gtcgatcaga ttccggtcgg gaaaaatgcc cccgacgacg tcaatgtcat tatcgaagtt
     1681 ccgatcggcg gcgagcccat caagtacgaa ctcgacaagg cctctggcgc gctggtggtg
     1741 gaccgttttc tttataccgc catgcgttat ccgggaaatt acggcttcat tccacacacg
     1801 ctgtcgggcg acggcgatcc ggtggacgtg ctgatcgcca acacccgcgc catcgcgccg
     1861 ggcgcggtga tgagcgtacg cccggtgggc gtgctgctga tggaagacaa tgccggcatg
     1921 gacgagaaga tcgtggcggt gccgtcgtcc catatcagcc agcgtttcga cggcatcagc
     1981 aattacagcg acctgccgga aattacggtc aagcagatcg aacacttctt cgcccattac
     2041 aaagatctgg agccgggcaa atgggtcaag atcatccgct ggggcgatgc cacggaagcc
     2101 aagaaaatga tcacagacgg tgttgcgcgc gccaagaacg cctaggcgcc ccagtccggc
     2161 gggggcggca gcatcttgac caggccggat aagccatcgc cataaccgtt gcgcaatgtg
     2221 ttccagtagg aatcgtcttc cttcagcatg atcatgttgg cggtggagaa gctgtcggtt
     2281 tcataacgca tgatgtcaat cggcgggccg caggacaggt tgctgcgcag ggtggcgtcg
     2341 aaggacagca gcgccagctt ggcggcttcg ttcagcggac agtccggcgt cagggcgcgg
     2401 tccaggatcg gcttgccgta tttggtctcg ccgatctgca ggaagctgga gcgcagcgag
     2461 gcttcgatga aattgccggc cgaatagacc tggaacagcc gtggcgtctc acccgcgatc
     2521 tggccgccga ccaaaaagct gccagtggga tcgccatagg gggtcactga ggggccgtct
     2581 cgcgcgatca ccgcgcgcaa tttatcgccc acgatgcggg cgacctcgaa catgctgcgc
     2641 gcggcataga gatcatcgcc ggtgccgctg cccagcattt cgcgcaactg gctggtcacc
     2701 gattgggtgg tggccaggtt gccggccgac aggatggcga tcacccggtt gccgggctgc
     2761 gtaaacagct cgaacttacg cacccttgtg acctgatcca cgcccgcgtt ggagcgtgaa
     2821 tccgaggcca gcaccagccc ggccggcagc actatcccta ggcaataagt catggacgcc
     2881 ccccgtatat tattggccac ctggccggcg attttggaca gggcgggcag gacagtgcaa
     2941 ggtctgcttc gggaaatagt gccggccatt tgtgaaaagg cgtcggcagg aaaggggggg
     3001 cttgatggac cgcatggact atctcgacga tatcgtcgcc acggtccacc gggacatgga
     3061 agcgcatctg ggccggggca aggtggctga ttacattccc gcgctggccc ggatggaccc
     3121 gaagaatttc gccattgccg tcaccacctg cgacggccgc accgcccaag ccggcggcgc
     3181 gcatctgccc ttttccatcc agagcatttc caaggtcttc accctgaccc tggcgctgaa
     3241 caagctgggc gccaatctgt gggaccgggt ggggcgcgaa ccctcgggct cgcgcttcaa
     3301 ttccattgtg caattggagg cggagaaagg catcccgcgc aatccgctga tcaatgccgg
     3361 ggcattgacg atcaccgaca ccttgctgga tggcggcgat cctgatgcga ccatcgccga
     3421 gattttgggc ttcatgcgcg gcctggcgga cgatcccgcc gtcgtgatcg acgatgaagt
     3481 ggcggagtcc gaggcccaga ccggctttcg caacaccagc ctggccaatt tcctgcgcgc
     3541 caacgacaat ctcaccggcc cggtggcgga tgtgctcaag gtctattttc atcaatgcgc
     3601 cctgcggatg aattgccggc agctggcacg cgccggcctg ttcctggccc atgccggaca
     3661 agaccccatc aatcatgccc gggtgaccac gccgttccgc accaagcgca tcaatgcgat
     3721 catgatgacc tgcgggcact atgatgcgtc gggtgacttt gcatgccgcg tcggcctgcc
     3781 gggcaagagc ggcgtgggcg gcggcattct cgccattgcg ccgcgccagg ctgcgatctg
     3841 cgtctggtcg cccggcctca atgcccaggg caattccctg gtcggcgcca tggcgctgga
     3901 acggttgtca tcgctgacgg gatggtcagt gttctgatgt caccttgccg cctgcttcgc
     3961 tgaaggcttc gccatggtgc gtgtctcacc cgatctaaga tgtggccgca tcgccggcga
     4021 gaacctgcac cgccttgggt agaggacgcg ccagcaaata gaatgccgcg acgtgcgtaa
     4081 tcatcagcac gggcacgtag atgatcggga tcgcatatgt ggcacccaac tgccctgcca
     4141 gcgcaggaag gccgccctgg acggctttgt aatagtcgag gatgagatcg gctaatccta
     4201 caagattgaa ggcgacgacg aacaaccaga aga
//
LOCUS       DATMDK010000483         2381 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_448202,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000483 DATMDK010000000
VERSION     DATMDK010000483.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2381)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2381)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2381
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_448202"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2140
                     /locus_tag="VNN98_09300"
     CDS             <1..2140
                     /locus_tag="VNN98_09300"
                     /inference="COORDINATES: protein motif:HMM:NF012670.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM62339.1"
                     /translation="DAILPIDALGFRRGAGALKTLLAENGLADHPLFAQAKARGIKAL
                     SGHAESIDVTNDVNGGPSGVGVATAAGKAAFWDMAGAKDTPKIIALEGEFAMTEGHAQ
                     ELKTQALALQVGKRLRVILSDNNAGIDDVLLGGVVPKQFTGYDLIEQWTSYGWNVLTV
                     ADGGDYGQITAAFEAMEKGDPADKRPMIAIAKTIKGYWPAASNGNLSETVKQIVSYQS
                     HPYGQKMNSDYFVALAGTFEARYGVEFEGIRKGAVTDERERLIQFKTNIDKVMSVFER
                     NGLGDWLADRLVTLGDGVKDDRPVHFTAKGDPFQDERLRVANLPKEPIKVTATNRLSG
                     ATKEVSVSLFRKAGEAAGARRAISEIIKWMNYVTDNRFITLAADLSESINVEHGSPWG
                     HYDPVANPLGTRVKAAIQEAGNVSTAIGLVSQSASIDPKQFSGVWALSGTYGAFTPLM
                     YTPARVWSQQNQDSRFRMGVLHILAGHSGPETAADGRTHFGIFATQVWKLFPRGQVIH
                     LNFWDYNDVAPGYFAAAEIAARDPKVGIIVIEVARPDNPVADRSGFADKDPLAAAKGL
                     YVIRDFAPDKPKQGYVIVQGASSSVNLVKILPRLEQAGINVKIVSAISEELFDRQPEA
                     YRRAVLPPEALYDAMVVSTGTRRVWPVQGLGPLTDAYSLTSDWDNQWLTGGLEGEVIR
                     EAHLDPESIFKGIERFAAERGKRISLPALT"
     gene            2144..>2381
                     /locus_tag="VNN98_09305"
     CDS             2144..>2381
                     /locus_tag="VNN98_09305"
                     /EC_number="3.5.1.1"
                     /inference="COORDINATES: protein motif:HMM:NF012913.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="asparaginase domain-containing protein"
                     /protein_id="HWM62340.1"
                     /translation="MTKQKIHLLTTGGTIAMQATAQGAGLGAPPPFREMLERALPDIE
                     VTVRPVLSKSSASFAFADIAAIAGAAQDAAGHGAG"
BASE COUNT          457 a          724 c          781 g          419 t
ORIGIN      
        1 agacgcgatc ttgccgatcg acgcgctggg ctttcgccgc ggcgccggtg cgctaaagac
       61 cttgttggcg gaaaatggcc tggccgatca tcccttgttc gcccaggcca aggcgcgcgg
      121 gatcaaggcg ctgtccggcc atgccgaaag catcgacgtc accaatgacg tgaatggcgg
      181 accgtcgggc gtgggtgtcg ccaccgcggc gggcaaggcg gcgttctggg acatggcggg
      241 cgccaaggac acgcccaaga tcatcgccct ggaaggcgaa ttcgccatga ctgaaggtca
      301 tgcgcaggaa ctcaagaccc aggccctggc gctgcaggtc ggcaaacggt tgcgtgtcat
      361 cctgtccgac aacaatgccg gcatcgacga tgtgctgctg ggcggcgtcg ttcccaagca
      421 attcaccggt tatgatctga tcgagcagtg gacgtcctac ggctggaacg tcttgacggt
      481 ggcggatggc ggcgactatg gccagatcac cgccgctttc gaggcgatgg agaagggtga
      541 tcccgccgac aagcggccga tgatcgccat cgccaaaaca atcaagggtt attggccggc
      601 ggcgtccaac ggaaatctgt cggagaccgt caagcagatc gtcagctacc agagccatcc
      661 ttatggccaa aaaatgaact ccgattattt cgtcgccctg gcgggtacct tcgaggcgcg
      721 ctacggcgtg gaatttgaag gcatccgcaa gggggcggtg acggacgaac gcgagcggct
      781 gattcagttc aagaccaaca tcgacaaggt gatgtcggtg ttcgagcgca acggtctggg
      841 cgactggctg gccgatcggc tggtgaccct gggcgatggc gtcaaggatg atcgcccggt
      901 gcattttacc gccaagggcg atcccttcca ggatgagcgg ctgcgcgtcg ccaatcttcc
      961 caaggagccc atcaaggtca cggcgaccaa ccgcctgtcc ggcgccacca aggaggtttc
     1021 ggtttccctg ttccgcaaag ctggggaagc ggcgggcgcg cgccgcgcca tttccgaaat
     1081 catcaaatgg atgaattacg tcaccgacaa tcgctttatc accttggcgg ccgacttgtc
     1141 ggaatccatc aatgtcgaac atggcagtcc gtggggccat tacgatccgg tggcgaaccc
     1201 gctgggaacg cgggtcaagg cggcgatcca ggaagccggc aatgtctcga ccgccatcgg
     1261 cctggtcagc cagagcgcca gcatcgatcc caaacaattc tccggggtgt gggcgctgag
     1321 cggcacctat ggcgccttca cacccctgat gtacacgccg gcccgggtgt ggagtcagca
     1381 gaaccaggac agccgctttc gcatgggcgt gctgcatatc ctggcggggc attccgggcc
     1441 ggaaaccgcg gcggacgggc gcacccattt cggcattttc gccacccaag tgtggaagct
     1501 gtttccgcgc ggccaagtta ttcacttgaa cttctgggac tataatgatg tcgcgccggg
     1561 ctatttcgcg gccgccgaga ttgccgcccg cgatcccaag gtggggatca tcgtgatcga
     1621 ggtggcgcgt ccggacaatc cggtggcgga ccgcagcggg tttgccgaca aggatccgct
     1681 ggcggccgcc aaggggcttt atgtcatccg cgacttcgcg ccggacaagc ccaaacaggg
     1741 ctatgtcatc gtgcaaggcg ccagttcctc ggtcaatcta gtgaaaatcc tgccgcggct
     1801 ggagcaggcc gggatcaatg tgaaaatcgt ctctgcgatc agcgaggaat tgttcgaccg
     1861 ccagccggaa gcctaccgcc gcgcggtcct gccgcccgag gcgctttacg acgccatggt
     1921 ggtgagcacg ggaacgcgcc gggtatggcc ggtgcagggc ctggggccgc tgacggatgc
     1981 ctattcgctc acctcggact gggacaatca gtggctcacg ggtgggcttg agggcgaggt
     2041 gatcagggaa gcccatctgg atccggagtc gatctttaag gggatcgagc gttttgcggc
     2101 cgagcgcggc aagcggatat cgctgccggc actgacctag ggaatgacca aacagaaaat
     2161 tcatcttttg accaccggcg gcaccatcgc catgcaggcg acggcgcagg gcgcgggctt
     2221 gggcgcgccg ccgcccttcc gcgaaatgct ggaacgcgcc ctgccggata tcgaagttac
     2281 cgtccgcccg gtcctgtcaa aatccagcgc cagctttgcc tttgccgaca tcgccgccat
     2341 cgccggcgcc gcccaggacg cggccgggca tggcgccggc g
//
LOCUS       DATMDK010000484         2615 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_217788,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000484 DATMDK010000000
VERSION     DATMDK010000484.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2615)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2615)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2615
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_217788"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1477
                     /locus_tag="VNN98_09310"
     CDS             <1..1477
                     /locus_tag="VNN98_09310"
                     /inference="COORDINATES: protein motif:HMM:NF024753.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="PQQ-binding-like beta-propeller repeat protein"
                     /protein_id="HWM62341.1"
                     /translation="PLLKPDPKDWLTYSGQYHAQRHSLLGQITAANVARLQARWVYHM
                     TGQKDLEATPIVANGVMYISQYNRIDAIDARSGNIIWQYQRQPVATGAQRGTGFWNNK
                     LYVTANDKHLLALDARNGSVLWDVAVHDGLQLAGQAPLIAHGKLIVSGNQPHGYIQGY
                     DADTGKYLWTWSPIPAADDPQLASWGGQKPDGMPIWVSGSYDPELNLIYYGTGQPEPQ
                     WAGEGRKGDNLYSDSIVALDPGTGKLKWWYQNTPHDTHDYDSLEMPVLVDAPWKGKPR
                     KLLLQANRNGFYYILDRTDGEFLQATQFVRRVDWLKGWDDKGRPIPDPAHDPSVKGTT
                     TCPSTAGATNWPSPTYDPKLHLFYFVAQEGCGINIRDTARNYAGTGYLESPDEGKSWQ
                     LFTRALDAFTGKKVWDYEQVTSHHYGPGLMSTAGGVVFSPEEFGQFTALDSKTGKVLW
                     HFNTGDVITAAPVSYSVDGKQYVAIISSSNVFAFGLPGGAK"
     gene            1474..2343
                     /locus_tag="VNN98_09315"
     CDS             1474..2343
                     /locus_tag="VNN98_09315"
                     /inference="COORDINATES: protein motif:HMM:NF012264.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HWM62342.1"
                     /translation="MRRLVLIAAFAAAASAAQAQTANPYTNNAAAIEEGRGLYNNTCT
                     GCHGANGAAGEIGPGLAIPGRSYGRNSDAQIFDAIQHGIPATVMPAHQSKLSDDQIWK
                     ITAYVKGLRGTAIDAPSPGNVANGEAIFWGKGDCGSCHMLGGKGSIIGPDLSNLASLR
                     KTNSIIDALTKDKHRVYGPGGAQPHALVPLPTWPVVRITMADGKTVRGVLRNEDSFSL
                     QMIGLDQQLHLFERARLKAVVYEPGSLMPTDYDKRLSKGEFDDLLAFLTRQGNPPQAD
                     KPQVRMPGGRDPD"
     gene            2343..>2615
                     /locus_tag="VNN98_09320"
     CDS             2343..>2615
                     /locus_tag="VNN98_09320"
                     /inference="COORDINATES: protein motif:HMM:NF021778.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-propeller fold lactonase family protein"
                     /protein_id="HWM62343.1"
                     /translation="MRTFKLLLLALLMAPLPASAAHYIMYVGAYTAGTSKGIYAWKFD
                     SKDGSLSSLGLMAESPQAAHLWIAPNHKTLYTVNWETAGGVSAYHID"
BASE COUNT          522 a          841 c          804 g          448 t
ORIGIN      
        1 tcccttgcta aagcccgatc ccaaggactg gctgacctat tccggccagt atcacgccca
       61 gcgccattcg ctgctgggcc agatcactgc cgccaatgtc gcgcgcctgc aggccaggtg
      121 ggtctatcac atgaccgggc agaaggatct ggaagcaacc cccatcgtcg ccaacggcgt
      181 gatgtatatt tcccagtata accgtatcga cgccatcgac gcgcgcagcg gcaacatcat
      241 ctggcagtac cagcgccagc ccgtcgccac cggcgcgcag cgcggcaccg gcttctggaa
      301 taacaagctg tatgtgacgg ccaacgacaa gcatctgctg gcgctggacg cgcgcaacgg
      361 cagcgtgctg tgggatgtgg cggtgcatga cggcctgcaa ttggcggggc aggcgccact
      421 gatcgcgcac ggcaagctga tcgtcagcgg caaccaaccc catggctaca tccaaggcta
      481 tgacgccgac accggtaaat atctctggac ctggtcgccg attccggccg ccgacgatcc
      541 gcagctggca agctggggcg ggcagaagcc ggacgggatg ccgatctggg tatcgggctc
      601 ctacgatccc gaactgaacc tgatttacta cggcaccggc cagcccgagc cgcaatgggc
      661 gggcgaaggg cgcaagggcg acaatctcta cagcgactcc atcgtggcgc tggatcccgg
      721 caccggcaaa ttgaaatggt ggtaccagaa cacgccgcac gacacccacg actacgactc
      781 gctggaaatg ccggtgctgg tggacgcgcc gtggaagggt aagccgcgca agctgttgct
      841 gcaggccaac cgtaacggct tttattatat tctcgaccgc accgacggcg agttcctcca
      901 ggccacccag ttcgtcagac gcgtggattg gctgaagggc tgggacgaca agggccgccc
      961 cattcccgat ccggcgcacg atccgtcagt gaaggggacc accacttgtc cttcgacggc
     1021 gggcgccacc aactggccgt cgcccaccta tgatcccaag ctgcacctgt tctatttcgt
     1081 ggcccaggaa ggctgcggca tcaatatccg cgacactgcc cgcaattatg ccggcaccgg
     1141 ctatctggaa agcccggacg agggcaagag ctggcagctt ttcacccgcg ccctggacgc
     1201 cttcaccggc aagaaagtgt gggactatga acaagtcact tcgcaccatt acgggccggg
     1261 actgatgtcc accgccggtg gtgttgtctt cagtccggag gagttcggcc agttcaccgc
     1321 cctcgattcc aaaaccggca aggtgctatg gcacttcaat accggcgatg tgatcactgc
     1381 cgcacccgtc agctacagcg tggacggcaa gcaatatgtc gccatcatct ccagcagcaa
     1441 tgtcttcgcc tttggtttgc cgggaggtgc gaaatgaggc gccttgttct gatcgcggct
     1501 ttcgccgccg ccgcgtccgc ggcgcaggcg caaacggcca atccctatac caacaatgcc
     1561 gcggcgatcg aggaaggccg cgggctgtat aacaacacct gcaccggctg ccatggcgcc
     1621 aatggcgcgg cgggtgagat cggtcccggc ctggcgattc ccggccgctc ctatggccgc
     1681 aacagtgacg cgcagatttt cgacgccatc cagcacggta ttcccgccac ggtgatgccg
     1741 gcgcatcaaa gcaagctgag cgacgaccag atctggaaga tcaccgccta tgtgaagggc
     1801 ctgcgcggaa cggcgatcga cgcgccgtca cccggcaatg tcgccaatgg cgaagcgatt
     1861 ttctggggca agggcgattg cggctcctgc cacatgctgg ggggcaaggg cagcatcatc
     1921 ggccccgatc tctccaatct ggcgagcctg cgcaagacca attccatcat cgacgccctg
     1981 accaaggaca aacaccgggt ctacggtccg ggcggggcgc agccgcatgc gctggtgccg
     2041 ctgccgacct ggccggtggt gcggatcacc atggctgacg gcaagacggt gcgcggcgtg
     2101 ctgcgcaacg aggacagttt ttcgctgcag atgatcgggc tggaccagca gcttcatttg
     2161 ttcgagcgcg ccaggctgaa ggcggtggtc tatgagccgg gaagcctgat gcccaccgac
     2221 tatgacaagc ggctgagcaa gggcgagttc gacgatctgc tggccttcct cacccgccag
     2281 ggcaatccgc cccaggctga caaaccacag gtccggatgc cgggcggacg ggatcccgac
     2341 tgatgcgcac tttcaagctc ctgttgcttg ccctgctgat ggcgccgcta ccggcctcgg
     2401 cggcgcatta cataatgtat gtcggggcct atacggcggg cacctccaag ggcatctatg
     2461 cctggaaatt cgacagcaag gacggcagcc tttcgtccct ggggctgatg gcggaatcgc
     2521 cgcaagcggc gcatctgtgg atcgcgccca accacaagac gctttacacg gtgaattggg
     2581 aaaccgccgg cggtgtcagt gcctatcaca tcgat
//
LOCUS       DATMDK010000485         2823 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_220006,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000485 DATMDK010000000
VERSION     DATMDK010000485.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2823)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2823)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2823
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_220006"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..738
                     /locus_tag="VNN98_09325"
     CDS             <1..738
                     /locus_tag="VNN98_09325"
                     /inference="COORDINATES: protein motif:HMM:NF012700.4"
                     /note="This protein performs the mismatch recognition step
                     during the DNA repair process; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA mismatch repair protein MutS"
                     /protein_id="HWM62344.1"
                     /translation="GPNMGGKSTYLRQTALIVILAQMGSFVPAEAAHIGVVDRLFSRV
                     GAGDDLAAGRSTFMVEMVETAAILNQATAKSLVILDEIGRGTATYDGLAIAWAAAEHL
                     HETNKSRALFATHYHEMVALSERLTSMACYTMKVREWNDSIIFLHEVTAGVADRSYGI
                     HVAKLAGLPQMVVSRAEEVLKALEEGREGHKPLARIDDLPLFGASAPVPKTSAVEDAL
                     KTIEPDALSPKEALEILYSLKKKLPSP"
     gene            899..1372
                     /locus_tag="VNN98_09330"
     CDS             899..1372
                     /locus_tag="VNN98_09330"
                     /inference="COORDINATES: protein motif:HMM:NF012791.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HWM62345.1"
                     /translation="MSSPASRTPRKFLVVIDKTPECRVALRFATRRAQHTGGRVTLMC
                     AATPPDFQQWRGVEEIMRDEAHAEAEGMLHEAAKLVNDLSGLLPELVIPYGLTTECLG
                     QLLKEDKDISILVLASGTAKEGPGPLVSMFGKGVQAIPVTIVPGNFTDEQIDALA"
     gene            1524..1709
                     /locus_tag="VNN98_09335"
     CDS             1524..1709
                     /locus_tag="VNN98_09335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003497428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin transmembrane helix small protein"
                     /protein_id="HWM62346.1"
                     /translation="MKILVAVAVGLVFLVLCLGLYTLWKGGDTARTWSNKLMRIRILA
                     QAIAIVIIMAALYFSQR"
     gene            1766..>2823
                     /gene="leuC"
                     /locus_tag="VNN98_09340"
     CDS             1766..>2823
                     /gene="leuC"
                     /locus_tag="VNN98_09340"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008035642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009316 - 3-isopropylmalate dehydratase
                     complex [Evidence IEA];
                     GO_function: GO:0003861 - 3-isopropylmalate dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0009098 - leucine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase large subunit"
                     /protein_id="HWM62347.1"
                     /translation="MAKTLYDKIWDAHLVDAPPGETPVLYIDRHLVHEVTSPQAFEGL
                     RLAGRKVRRPELTLAVADHNVPTKDRDQGIIEPESRLQVETLEKNAKDFGVEYFPMSD
                     IRQGIVHIIGPEQGWTLPGTTIVCGDSHTSTHGAFGALAFGIGTSEVEHVLATQTLRA
                     QHSKNMRVMVNGKLPEGVTAKDIALAVIAKIGTAGGTGYVIEYAGGAIRALSMEGRMT
                     LCNLTIEGGARAGLIAVDDVTLDYVRGRPRAPKAAAWEGAAMYWKTLQSDADAKFDAE
                     VTLDARDIVPMVTWGTSPEQALPITANVPDPAAMVDAHKREAAERALAYMGLTANMKI
                     TDIKVDHVFIGSCTNGRI"
BASE COUNT          545 a          895 c          898 g          485 t
ORIGIN      
        1 ggcccgaaca tgggcggcaa gtctacgtat ttgcggcaaa ccgcgctcat cgtgatcctg
       61 gcccagatgg gctcgttcgt tccggcggag gcggcgcata tcggcgtggt ggaccggctc
      121 ttctcccgcg tcggcgcggg cgatgacctg gcggcggggc gcagcacgtt catggtggag
      181 atggtggaga ccgccgcgat cctgaatcag gccacggcga agagccttgt tattctggat
      241 gaaatcgggc gcggcaccgc cacttatgac ggcctcgcca tcgcctgggc ggcggcggaa
      301 catctgcatg aaaccaacaa aagccgggcg ctgttcgcca cccattatca cgagatggtg
      361 gctttgagcg aaaggctgac ctccatggcc tgctacacca tgaaagtgcg ggaatggaat
      421 gacagcatca tcttcctgca tgaagtgact gcgggtgtcg ccgaccgttc ctacggcatc
      481 catgtcgcca agctggcggg cctgccgcaa atggtggtga gccgcgcgga agaagtgctc
      541 aaggcgctgg aagagggccg cgaaggccac aagcccctgg cccggatcga cgacctgccg
      601 ctttttggcg ccagcgcgcc ggtgcccaag accagcgcgg tggaagatgc gctgaaaacg
      661 attgagcctg acgccctgtc gccgaaagag gcgctggaga ttctttacag cctgaaaaag
      721 aaactaccct ccccttgagg gagggtcgaa atttgcgaag cgaatttcgg ggcggggtcc
      781 gactccgcac cttccaaccc ctccccgaag ccgacttcgc gcttgtcgcg cgaattcacc
      841 ttcgaccctc cctcaagggg agggtgaaat gctgtggctg atacggtagc ctgcctccat
      901 gagcagccct gcctcccgca cgccgcgcaa attcctggtc gtgatcgaca agaccccgga
      961 atgccgggtg gcattgcgct ttgccacccg ccgggcccag cataccggcg gccgcgtcac
     1021 cctgatgtgc gccgccaccc cgcccgactt ccagcaatgg cgcggcgtgg aggagatcat
     1081 gcgcgatgag gcccatgccg aggccgaagg catgctgcac gaagccgcca agctggtgaa
     1141 cgatctgtcg ggcctgctgc cggaactggt gatcccttac gggttgacca ccgaatgcct
     1201 gggccagttg ctgaaagagg acaaggacat ctccatcctg gtgctggctt cgggcaccgc
     1261 caaggaaggc cccggcccgc tggtctccat gttcggcaaa ggagtgcagg cgattccggt
     1321 cacgattgtt cccggaaact tcaccgacga acagattgac gcgttggcct aattgtccga
     1381 acgcccgcga agcggacctg ccgctcgctc aagctcgcgg cgttcgccgc tttcgcaggt
     1441 ccaccggacc tgctcacgct tcgcgccgca gttcatggtg gcccgcattt gcgggccatg
     1501 acaaccgggc gtaaaacccc gccatgaaga tccttgtcgc cgtcgccgtc ggattggtgt
     1561 tcctggtctt gtgcctgggg ctctataccc tgtggaaggg cggcgacacg gcgcgcacat
     1621 ggtcgaataa actgatgcga atcaggatat tagcccaggc catcgccatc gtgatcatta
     1681 tggcggcgct gtatttttcg cagcgttgat caaagacccc gcggcttata tgtaagccgc
     1741 ccgaacaccc gaaaagaaca agaccatggc caagacgctg tacgacaaga tctgggacgc
     1801 gcatctggtg gacgccccgc cgggcgagac ccccgtgctc tatatcgacc ggcatctggt
     1861 gcatgaagtc accagccccc aggcgtttga gggcctgcgg ctggcgggcc gcaaagtgcg
     1921 ccgccccgaa ctgaccctgg cggtggccga ccataacgtg ccgaccaagg accgggacca
     1981 gggcatcatc gagccggagt cccggctgca ggtcgagacc ctggaaaaga acgccaagga
     2041 tttcggcgtc gaatacttcc ccatgagcga tatccgtcag ggcatcgtgc atatcattgg
     2101 gccggaacag ggctggaccc tgccgggcac caccatcgtc tgcggcgaca gccacacgtc
     2161 tacccatggc gcctttggcg cgctggcctt cggcatcggc acctcggaag tcgagcatgt
     2221 gctggcgacc cagaccctgc gcgcccagca ttccaagaac atgcgggtca tggtgaacgg
     2281 caagctgccc gagggcgtca ccgccaagga cattgcgctc gccgtgatcg ccaagatcgg
     2341 caccgccggc ggcaccggct atgtcattga atatgccggt ggggccatcc gcgcgctgtc
     2401 gatggaaggc cgtatgacct tgtgcaacct gaccatcgaa ggcggcgccc gtgccgggct
     2461 cattgcggtc gatgacgtga cgctggatta cgttcggggc cggccgcgcg cgcccaaggc
     2521 agcggcctgg gaaggcgcgg cgatgtattg gaagaccttg cagtccgacg cggatgccaa
     2581 gttcgacgcc gaagtgacat tggatgcgcg cgatatcgtg ccgatggtga cctggggcac
     2641 gtccccggaa caggcgctgc ccatcaccgc caatgtgccc gacccggcgg cgatggtcga
     2701 cgcgcacaag cgcgaagcgg cggaacgggc gctggcctat atgggcctga ccgccaacat
     2761 gaagatcacc gacatcaagg tggatcacgt tttcattggc tcctgcacca atggccggat
     2821 cga
//
LOCUS       DATMDK010000486         2054 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_454678,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000486 DATMDK010000000
VERSION     DATMDK010000486.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 2054)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2054)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2054
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_454678"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..743)
                     /gene="cysT"
                     /locus_tag="VNN98_09345"
     CDS             complement(<1..743)
                     /gene="cysT"
                     /locus_tag="VNN98_09345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016655420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0015419 - ABC-type sulfate transporter
                     activity [Evidence IEA];
                     GO_process: GO:0008272 - sulfate transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate ABC transporter permease subunit CysT"
                     /protein_id="HWM62348.1"
                     /translation="MSAIGLKLFLPGFRSQHVLPGFRLSLGFTLFYLTSLVLVPLLAL
                     VIRPVELGFGGFWAAISTPRVLASLRLSFGMALAAAAIDSVFGMIIAWVLARYRFPGK
                     GLLDAVIDLPFALPTAVAGIALSTLYAPTGWIGSVLAQHGIRIAYTPWGVLVAMILIG
                     LPFTVRTLQPVLSELGLEVEEVAATLGATRLQTIARIVFPPLLPAILTGAAMAFARGV
                     GEYGSIIFIAGNIPAVSEIAPLLIVTKLE"
     gene            complement(828..1817)
                     /locus_tag="VNN98_09350"
     CDS             complement(828..1817)
                     /locus_tag="VNN98_09350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005094350.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate ABC transporter substrate-binding
                     protein"
                     /protein_id="HWM62349.1"
                     /translation="MKRALSLLVAAGVFAATTAQADVTLLNASYDPTRELYKDLGAAF
                     AAQYKADKVTINTSNGGSGAQARAVIDGLPADVLTLALAADIDAVSKNAGILPADWQK
                     RLPDNSTPYTSTIVFLVRKGNPWKIKDWNDLVKPGIQVVTPNPKTSGGARWAYLGAWA
                     YAEKAPGGNAEKAKAFVGNLYKHVPVLDTGARGATVTFTKRGIGDVLLSWENEAHLAL
                     KETPGEYEIVYPSRSILAEPPVALVDKNVDKHKTRAAAEAFLKFLYTPAAQEIEAKDF
                     YRPRNQEIAAKYKSQFPTIPLATIDGDFGGWAKAQATHFGDGGVFDQIYQPGK"
     gene            complement(1828..>2054)
                     /locus_tag="VNN98_09355"
     CDS             complement(1828..>2054)
                     /locus_tag="VNN98_09355"
                     /inference="COORDINATES: protein motif:HMM:NF019042.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="porin"
                     /protein_id="HWM62350.1"
                     /translation="RYSDINLDYLPLAAAASGGIAGGKQDVWTVGLNWYPTNGIRFAL
                     DYDNISVNHINAPATDITASAIALRTQVSL"
BASE COUNT          414 a          613 c          666 g          361 t
ORIGIN      
        1 tgttccagct tggtgacgat cagcagcggg gcgatctcgc tgaccgccgg aatgttgccg
       61 gcaataaaga tgatggagcc gtactcgccc acgccgcggg cgaaggccat ggccgcgccg
      121 gtcaggatgg ccggcagcaa gggcggaaat acgatccggg cgatggtctg cagccgcgtc
      181 gcacccaggg tggcggcgac ctcttcgact tccaggccca attcactaag caccggctgc
      241 aaggtgcgca ccgtgaacgg caggccgatg aggatcatcg ccaccagcac gccccagggg
      301 gtgtaagcga tgcgaatgcc atgctgcgcc agcaccgatc caatccaccc tgtcggtgca
      361 taaagggtgg acagtgcgat gcccgccacc gccgtcggca aggcgaaagg cagatcgatc
      421 accgcatcga gcaggccctt gccgggaaag cgataacgcg ccagcaccca ggcgatgatc
      481 atgccgaaca ccgaatcgat cgccgccgcc gccagcgcca tgccgaagga caagcgcaac
      541 gatgccagca cgcgcggggt ggagatcgcc gcccagaagc ctccaaagcc cagttcgacc
      601 gggcggatca ccagcgccag cagcggcacc agcaccaggg atgtcaggta gaacagcgtg
      661 aagcccagcg acaggcgaaa gcccggcagc acatgctggg acctgaagcc aggcagaaag
      721 agtttcaagc cgatcgcgct catggtgtct ttaaaagaaa ctccgcaggc cggctttgga
      781 gccggcctgc ggaaagttgg ggggaagttt caaggatcag atttgcgtca tttgcccggc
      841 tggtagattt gatcgaacac accgccatcg ccgaaatggg tggcctgcgc cttggcccag
      901 ccgccgaaat caccgtcgat ggtggccagc gggatggtgg ggaactggct tttatacttg
      961 gcggcaattt cctggttgcg gggacgatag aaatctttcg cctcgatctc ctgcgccgcc
     1021 ggcgtgtaga gaaatttcag gaaggcctcc gcggcggcgc gggtcttgtg cttgtcgaca
     1081 ttcttgtcca ccagcgccac cggcggctcg gccaggatgg agcgcgaggg ataaacgatc
     1141 tcatactcgc cgggggtttc cttgagcgcc agatgagcct cattctccca ggacagcagc
     1201 acatcgccga taccgcgttt ggtgaaggtg acggtggcgc cgcgcgcgcc ggtatccagc
     1261 accggcacat gcttgtagag attgccgaca aaggccttgg ccttttccgc attgccgccc
     1321 ggcgcttttt cggcataggc ccaggccccc agataggccc agcgcgcacc gcccgacgtt
     1381 ttgggattgg gcgtcaccac ctggatgccc ggcttcacca gatcgttcca gtccttgatc
     1441 ttccagggat tgcccttgcg caccaggaaa acgatggtcg aggtgtaagg cgtggaattg
     1501 tccggcaggc gtttctgcca atcggcgggc agaatgccgg cattcttgga taccgcgtcg
     1561 atatcggcgg ccaaagcaag cgtcagaaca tcggccggaa gcccatcgat cacggcgcgc
     1621 gcctgagcgc ccgagccgcc attggaggtg ttgattgtca ccttatcggc cttgtactgg
     1681 gcggcgaagg cggcgccgag gtctttgtat aattcgcgag tgggatcata gctggcgttc
     1741 agcaaggtga cgtcagcctg cgccgttgtg gcggcgaaaa caccggccgc gaccagaagg
     1801 gaaagcgcgc gtttcataat atgctcctta cagggaaact tgagtgcgca gcgcgatggc
     1861 gctggcggta atgtcggtgg cgggcgcatt gatgtggttg accgaaatat tgtcgtaatc
     1921 cagcgcgaag cgaatgccgt tggtcgggta ccagttcagg cccaccgtcc agacatcttg
     1981 tttgccgccg gcgattccgc ctgacgccgc agcggcaaga ggcaggtaat ccaggttgat
     2041 gtcgctgtag cgcg
//
LOCUS       DATMDK010000487         3251 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Rhizomicrobium sp. isolate SMAG_U13406 k141_457176,
            whole genome shotgun sequence.
ACCESSION   DATMDK010000487 DATMDK010000000
VERSION     DATMDK010000487.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37942812
            Sequence Read Archive: SRR7975446
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Rhizomicrobium sp. (soil metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Micropepsales;
            Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 3251)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3251)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 15:03:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 9
            tRNAs                             :: 7
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3251
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_457176"
                     /isolate="SMAG_U13406"
                     /isolation_source="soil"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.7291 N 123.6419 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..466)
                     /locus_tag="VNN98_09360"
     CDS             complement(<1..466)
                     /locus_tag="VNN98_09360"
                     /inference="COORDINATES: protein motif:HMM:NF012264.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HWM62351.1"
                     /translation="MRKLLVAAALAALSLPAQAADKYVNFEAVGRVILSGEYQSVLGD
                     CEGCHGKNLAGGVTLMTPFGKLVTPNITSDKDTGIGNYSAEDFRQAMKAGIAPGGKLL
                     YHAMPYPAYARMRDGDIAALWAYLRTVKPVRNSVNVNQLSFPFNLRFMMRGWN"
     gene            complement(463..2226)
                     /locus_tag="VNN98_09365"
     CDS             complement(463..2226)
                     /locus_tag="VNN98_09365"
                     /inference="COORDINATES: protein motif:HMM:NF017050.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GMC family oxidoreductase"
                     /protein_id="HWM62352.1"
                     /translation="MAKLLPRKDAVIIGLGWTGSIMAQQLTDAGLNVVAIERGPWRDT
                     ATDFNIAYMQDELRYAVRKDLFLQPHVEAMTMRNDMRQTALPMRDYGSFLPGHGVGGA
                     GVHWNGQTWRFWDSDFSIRTHLTQRYGAAKLKNLQLQDWGVTWNEIEHSFDTFEYLCG
                     VSGKAGNLKGRLQPGGNVFESPRSREYPNPPLKMPYTSTLFAQKMTELGYHPFPLPSS
                     NLSQAYVNPLGIRMGQCSYCGFCERFGCGNYSKASAQTTILPVLMKKPNFELRTECEV
                     LKVNLMPDGKMAKSVTYIGADGVEYEQPGDVVLICAYGLMNVRLMMLSKIGTQYDPAT
                     GKGTLGRNYCYQTSAGARMMFEGKHFNPFIGAGALGQVVDDFNGDAFDHSKLDFVGGA
                     GVACNVSNGRPIGNRPTLPGSPRWGAKWKQATVDGYNNSMGIGSQGSSYPVRENYLDL
                     DPTYTDRHGRPLLRITFDFPDNDVAMSNYMSDQMEKMVRPFNAKFAAVSRLKKGWNSV
                     PYQSTHNTGGAVMGGDPKTSAVNKYLQSWDVPNVFVIGASAFAHNAGMNPTGTVGALA
                     FWAADAITTQYLKSPGALVPA"
     gene            complement(2228..2959)
                     /locus_tag="VNN98_09370"
     CDS             complement(2228..2959)
                     /locus_tag="VNN98_09370"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF025004.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gluconate 2-dehydrogenase subunit 3 family
                     protein"
                     /protein_id="HWM62353.1"
                     /translation="MEHSSRALSRRRLLASVAAMPILAASADGRSISGTLPWSPFAGE
                     PPRPVNPLGWYFFTPGEAAAVEAIVDRLIPADHLSPGGKDCGCAIFIDRQLAGSFGQS
                     SRLYTGGPFMPGLATQGYQGDLTPAGRYRLGLRALNDHTNTAYKKDFRALTGEQQDAV
                     LAGLDGGKITLKLRPGFNTKQFFELVLQNTMEGFFADPLYGGNKNMASWKMIGFPGAR
                     YDYRDHIGKHNQPYPLGPVSIYGEA"
     gene            complement(3039..>3251)
                     /locus_tag="VNN98_09375"
     CDS             complement(3039..>3251)
                     /locus_tag="VNN98_09375"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HWM62354.1"
                     /translation="DQTDCSGSSYRPPRSGLSPAFGEPLLATIVPQKSHGSQGFFMDI
                     QTLAQLRGMLCFAAATWPLADPGAAI"
BASE COUNT          632 a          980 c         1011 g          628 t
ORIGIN      
        1 ggttccagcc gcgcatcatg aaacgcaggt tgaaggggaa gctcagctgg ttgacgttga
       61 cgctgttcct caccggcttg acggtgcgca ggtaggccca caacgccgcg atgtcgccgt
      121 cgcgcatgcg ggcataagcg ggataaggca tggcgtgata gagcagcttg ccgcccggcg
      181 cgatgcccgc cttcatcgcc tggcggaagt cctcagcgct gtagttgccg atgccggtgt
      241 ccttgtcaga ggtgatgttg ggcgtcacca gtttgccgaa cggcgtcatc agggtgacgc
      301 cgcccgccag gttcttgccg tgacagcctt cgcagtcccc cagcacggat tgatactcgc
      361 ctgaaaggat gacgcgacca acagcctcga aatttacata tttgtctgcc gcctgcgcgg
      421 gcaatgacaa cgcggcaagc gcagcggcaa caagaagttt cctcatgcgg gcaccagcgc
      481 gccgggactc ttgagatatt gggtggtgat ggcgtccgcc gcccagaagg ccaacgctcc
      541 caccgtgccg gtggggttca tcccggcatt gtgggcgaag gccgacgcgc cgatcacgaa
      601 cacattgggc acgtcccagc tctgcagata cttgttcacc gcgctggtct tgggatcgcc
      661 ccccatcacg gcgccgccgg tattatgcgt gctttgatag ggcaccgaat tccagccctt
      721 tttgagccgc gacaccgccg caaatttggc gttgaagggc cgcaccatct tctccatctg
      781 gtccgacata tagttcgaca tggcgacgtc gttgtcgggg aagtcgaagg taatgcgcag
      841 cagcggcctt ccgtgccggt cggtataggt ggggtcgagg tcgagataat tctcccgcac
      901 cggataggac gagccctgcg agccgatacc catcgaattg ttgtagccgt ccaccgtcgc
      961 ctgtttccat ttggcgcccc agcgcgggct gcccggcaaa gtcgggcggt tgccgatcgg
     1021 ccgcccgttg gagacgttgc aggcgacgcc cgcgccgccc acgaaatcca gcttggaatg
     1081 atcgaaagca tcgccgttga aatcatcaac gacctggccc agcgcgcccg ccccgataaa
     1141 ggggttgaaa tgcttaccct cgaacatcat gcgcgcgccg gcgctggtct ggtagcaata
     1201 attgcggccc aaggtgccct tgccggtcgc cggatcgtat tgggtgccga tcttggaaag
     1261 catcatcagg cgcacattca tcagcccata ggcgcagatc agcaccacgt cgcccggctg
     1321 ttcatattcc acgccatcgg cgccaatata ggtgacgctc ttggccatct tgccgtcggg
     1381 cataagattg accttgagca cctcgcattc ggtgcgaagc tcgaaattcg gctttttcat
     1441 caagaccggc aggatggtgg tctgggcgct ggccttggaa tagttgccgc agccaaagcg
     1501 ttcgcagaag ccgcaatagc tgcattgtcc catccgtatg cccagcggat tgacataggc
     1561 ttgcgacaga ttggaggaag gcagcggaaa gggatgataa cccaactccg tcatcttctg
     1621 cgcgaacagg gtcgatgtgt agggcatctt gagcggcggg ttgggatatt cgcgggaccg
     1681 cgggctttca aagacattgc cgccgggctg tagccggccc ttgagattgc ccgccttgcc
     1741 ggaaacgccg caaagatact cgaaggtatc gaaactgtgc tcgatctcgt tccaagtcac
     1801 gccccagtcc tgcaattgca gattcttgag cttggccgcg ccataacgct gggtgagatg
     1861 ggtccgaatc gagaaatcgc tgtcccagaa acgccaggtc tggccgttcc agtgcacccc
     1921 ggcaccgccg acgccatggc cgggcaaaaa cgagccataa tcgcgcatcg gcagcgccgt
     1981 ctgtcgcata tcgttgcgca tggtcatggc ttcgacatgg ggctgcagga acagatcctt
     2041 gcgcacggca tagcgcagct cgtcctgcat ataggcgatg ttgaaatcgg tggcggtgtc
     2101 gcgccacggc ccacgctcga tggcgaccac attgaggccc gcgtcggtca actgctgggc
     2161 catgatcgag ccggtccagc ccaggccgat gatcaccgcg tcttttctgg gaagcagctt
     2221 ggccatctta cgcctcccca taaatggaga cggggcctag cggataaggc tggttgtgct
     2281 tgccgatatg gtcgcgatag tcgtagcgcg cgccgggaaa accgatcatc ttccagctgg
     2341 ccatgttctt gttgccgcca tagagcggat cggcaaagaa gccttccatg gtgttctgca
     2401 gcaccagctc gaaaaattgc ttggtgttga agccgggcct cagcttgagc gtgatcttgc
     2461 cgccgtccag cccggccagc accgcgtcct gctgttcccc cgtcagggcg cggaaatctt
     2521 ttttataggc cgtgttggtg tggtcattca gcgcccgcag gcccaaacga tagcgcccgg
     2581 ccggcgtcag gtcgccctga tagccctggg tcgcaagtcc cggcatgaaa ggaccgccgg
     2641 tgtacaggcg gctggattgc ccgaacgaac ctgccagctg gcggtcgatg aagatggcgc
     2701 agccgcaatc cttgccgccc ggcgacaggt gatcggccgg gattagccgg tcgacgatgg
     2761 cttccaccgc tgccgcttca ccgggggtga agaaatacca gcccagcgga ttgacggggc
     2821 gcggcggttc ccccgcgaaa ggcgaccagg gcaaggtgcc cgagatactg cggccgtcag
     2881 cagacgcagc caggatcggc atcgccgcaa cggacgccag caggcggcgg cggctgagcg
     2941 cgcgcgaaga atgttccatc tgtcccctcc ggctgaggca ccggctctca tgattctgtt
     3001 cttgttggcg gcgatcctaa gtgcgagttc cgcgccaatc aaattgccgc gccgggatca
     3061 gcaagaggcc atgttgcggc cgcgaaacag agcatgccgc gcagctgtgc aagtgtctgg
     3121 atatccatga agaaaccttg ggaaccatgg cttttttgcg gaacgatggt ggcaaggagg
     3181 ggttcaccaa aggctgggga caacccactc cttggaggac gatatgacga accagaacaa
     3241 tcagtctggt c
//
